Citrus Sinensis ID: 015673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MTSLRHIRRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQKARV
Secondary Structure (PSIPRED)
ccccHHHHHHcHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHcHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHcc
Coil and Loop (DISEMBL)
MTSLRHIRRLCTattaagssttassiSVSKAKSKlrsefdpdkaldIYSSVSkhyaspvssryaqdLTVRRLAKSKRFSDIETLIEshkndpkitqepyLCNLIRSYgqagmfdhaMRTFdqmdelgtprsvISFNALLFACtrsrlydkvpilfdeipkkynlspdkisyGLLLkshcdsgssdKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRitntyggdpeRLKELIDEMRdaglkpdtiSYNFLMTCYCKNEMMDEAKKVYEGleengcspnattFRTWIYHlcgsgnfdKAYKVFKESVMvhkipdfnTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEelglvpapavgdgqkarv
Flexible Loop (DISEMBL)
mtslrhirrlctattaagssttassisvskaksklrsefdpdKALDIYSsvskhyaspvssryaqdltvrRLAKSKRFSDIEtlieshkndpkitqEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVritntyggdpeRLKELIDEMRDaglkpdtisYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMvhkipdfntvKLLVEGlvkkkkikeakgvirtikkkfppnvlRAWKKVEEelglvpapavgdgqkarv
Low Complexity Region (SEG)
MTSLRHIRRLCtattaagssttassisvskakskLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGvevttvtyttvLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTvkllveglvkkkkikeakgviRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQKARV
Disordered region (IsUnstruct)
******************************************************************LTVRRL*******DIETLI*******KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD*******LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLV*************
Disordered Region (DISOPRED)
*TSLR**RRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQKARV
Disordered Region (DISEMBL)
MTSLRHIRRLCTA************************EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQKARV
Disordered Region (DISPRO)
*TSLRHIRRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQKARV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSLRHIRRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDGQKARV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q9M065	412	Pentatricopeptide repeat-	yes	no	0.955	0.934	0.664	1e-152
Q9ZU67	418	Pentatricopeptide repeat-	no	no	0.977	0.942	0.597	1e-138
Q8LE47	408	Pentatricopeptide repeat-	no	no	0.942	0.931	0.341	8e-57
Q8GW57	397	Pentatricopeptide repeat-	no	no	0.918	0.931	0.335	4e-54
Q9LG23	398	Pentatricopeptide repeat-	no	no	0.885	0.896	0.330	3e-52
Q9LK57	394	Pentatricopeptide repeat-	no	no	0.749	0.766	0.336	7e-51
Q9SAB4	405	Pentatricopeptide repeat-	no	no	0.925	0.920	0.311	9e-48
Q9LK58	551	Pentatricopeptide repeat-	no	no	0.746	0.546	0.324	2e-43
Q8S8P6	624	Pentatricopeptide repeat-	no	no	0.759	0.490	0.282	1e-30
Q9SIC9	918	Pentatricopeptide repeat-	no	no	0.679	0.298	0.312	2e-30

>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1

 Score =  538 bits (1386), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/391 (66%), Positives = 318/391 (81%), Gaps = 6/391 (1%)

Query: 3   SLRHIRRLCTATTAAGSSTTASS---ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV 59
           SLR +RR  +A  AA  +TTA S   ISVSKAKS LR E DPDKAL IY++VS H ASPV
Sbjct: 7   SLRLVRRFASA--AADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPV 64

Query: 60  SSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
           SSRYAQ+LTVRRLAK +RFSDIETLIESHKNDPKI +EP+   LIRSYGQA MF+HAMRT
Sbjct: 65  SSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRT 124

Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPDKISYGLLLKSH 178
           F+QMD+ GTPRS +SFNALL AC  S+ +DKVP LFDEIP++YN + PDKISYG+L+KS+
Sbjct: 125 FEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSY 184

Query: 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
           CDSG+ +KA+E++ +M+ KG+EVTT+ +TT+L+ LYK+G  E A+ LW+EM KKG +LD 
Sbjct: 185 CDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN 244

Query: 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
           AAYNVRI +     PER+KELI+EM   GLKPDTISYN+LMT YC+  M+DEAKKVYEGL
Sbjct: 245 AAYNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGL 304

Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
           E N C+PNA TFRT I+HLC S  +++ Y +FK+SV +HKIPDFNT+K LV GLV+ KK 
Sbjct: 305 EGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKR 364

Query: 359 KEAKGVIRTIKKKFPPNVLRAWKKVEEELGL 389
            +AKG+IRT+KKKFPP+ L AWKK+EEELGL
Sbjct: 365 DDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/405 (59%), Positives = 303/405 (74%), Gaps = 11/405 (2%)

Query: 4   LRHIRRLCTATTAAGSSTTA--SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS 61
           LR +RR  TAT    S TTA   +I++SKAKSKLR   DPDKAL IY SVS +  SP+SS
Sbjct: 8   LRFLRRFSTAT-GIDSQTTAYPGAITMSKAKSKLRKVQDPDKALAIYKSVSNNSTSPLSS 66

Query: 62  RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFD 121
           RYA +LTV+RLAKS+RFSDIE LIESHKN+PKI  E +L  LIRSYG+A MFDHAM+ F+
Sbjct: 67  RYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFE 126

Query: 122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY-NLSPDKISYGLLLKSHCD 180
           +MD+LGTPR+V+SFNALL AC  S L+++VP LFDE P++Y N++PDKISYG+L+KS+CD
Sbjct: 127 EMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCD 186

Query: 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
           SG  +KA+E++ +ME KGVEVT + +TT+L  LYK G  +EAE LW EM  KG DLD   
Sbjct: 187 SGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTV 246

Query: 241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
           YNVR+ N     PER+KEL++EM   GLKPDT+SYN+LMT YC   MM EAKKVYEGLE+
Sbjct: 247 YNVRLMNAAKESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLEQ 306

Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360
               PNA TFRT I+HLC +G +D+   VFK+S +VHKIPDF T K L EGLVK  ++++
Sbjct: 307 ----PNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMED 362

Query: 361 AKGVIRTIKKKFPPNVLRAWKKVEEELGLVP---APAVGDGQKAR 402
           A+GV R +KKKFPP ++  WKK+EE+LGL     A AV    + R
Sbjct: 363 ARGVARIVKKKFPPRLVTEWKKLEEKLGLYSKGNAAAVSSSSQTR 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2

 Score =  221 bits (563), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 224/387 (57%), Gaps = 7/387 (1%)

Query: 6   HIRRLCTATT--AAGSSTTASSISVSKAK-SKLRSEFDPDKALDIYSSVSKHYASPVSSR 62
            IR L +A+T  +  S T  +S   SKA  S L+SE DPD+ L+I  + S      +  R
Sbjct: 22  QIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRI-DR 80

Query: 63  YAQDLTVRRLAKSKRFSDIETLIESH-KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFD 121
            A    V  LA+ K FS +  L++   +N P +  E +  + I  Y QA M DH++R F 
Sbjct: 81  IAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFR 140

Query: 122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181
            +++    R+V S NALLFAC  ++ Y +   ++ E+PK Y + PD  +Y  ++K  C+S
Sbjct: 141 DLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCES 200

Query: 182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY 241
           GS+  +  ++ EME KG++  + ++  +++  Y +  ++E  ++ + M+ +GV++ V+ Y
Sbjct: 201 GSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRGVNIGVSTY 260

Query: 242 NVRITNTYGGDPER-LKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
           N+RI +       +  K L+D M  AG+KP+T++Y+ L+  +C  +  +EAKK+++ +  
Sbjct: 261 NIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVN 320

Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360
            GC P++  + T IY+LC  G+F+ A  + KES+  + +P F+ +K LV GL K  K++E
Sbjct: 321 RGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEE 380

Query: 361 AKGVIRTIKKKFPPNVLRAWKKVEEEL 387
           AK +I  +K+KF  NV   W +VE  L
Sbjct: 381 AKELIGQVKEKFTRNV-ELWNEVEAAL 406

May be involved in translation through its association with polysomes. Could bind RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2

 Score =  212 bits (539), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 208/388 (53%), Gaps = 18/388 (4%)

Query: 1   MTSLRHIRRLC-----TATTAAGSSTTASSISVSK-----AKSKLRSEFDPDKALDIYSS 50
           M SLRHIRR C      AT  A  ST ++ I   K     A  KL+SE DP+K  +++ +
Sbjct: 1   MLSLRHIRRFCHFPSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKA 60

Query: 51  VSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA 110
            + +    + +R+A + TV RLA + R   IE L+E  K  P+  +E ++  +I  YG+A
Sbjct: 61  NATNRLV-IENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKA 119

Query: 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170
           GM   A+ TF  MD  G  RSV SFNA L   + +     +     + P KY +  D +S
Sbjct: 120 GMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVS 179

Query: 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230
           + + +KS C+ G  D A   + EME  G+    VTYTT+++ LYK         LW+ M 
Sbjct: 180 FNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMV 239

Query: 231 KKGVDLDVAAYNVRI----TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE 286
            KG   ++  +NVRI          D   L  L+ +++   ++PD+I+YN ++  +    
Sbjct: 240 LKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQ---VEPDSITYNMVIKGFFLAR 296

Query: 287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK 346
             D A++VY  +   G  PN   ++T I++LC +GNFD AY + K+ +     P+ +TV+
Sbjct: 297 FPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDTVE 356

Query: 347 LLVEGLVKKKKIKEAKGVIRTIKKKFPP 374
           +L++GLVKK ++ +AK ++  + ++ PP
Sbjct: 357 MLLKGLVKKGQLDQAKSIMELVHRRVPP 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 213/372 (57%), Gaps = 15/372 (4%)

Query: 7   IRRLCTATTAAGSSTTASSISVSKAKSKLRS----EFDPDKALDIYSSV--SKHYASPVS 60
           IRR  +A T   S  TA + ++S  +  L S    E +P + ++ +     S+ + + ++
Sbjct: 17  IRRFSSAATVV-SEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIA 75

Query: 61  SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF 120
                D TVRRL  +KR   +E ++E  K    +++E +   +I  YG+AGMF++A + F
Sbjct: 76  ---VYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVF 132

Query: 121 DQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180
           ++M      RSV+SFNALL A   S+ +D V  LF+E+P K ++ PD +SY  L+K+ C+
Sbjct: 133 EEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCE 192

Query: 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
             S  +A+ LL+E+ENKG++   VT+ T+L   Y +G  E  E +W++M +K V +D+  
Sbjct: 193 KDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRT 252

Query: 241 YNVRITNTYGGDPERLKELID---EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297
           YN R+      +  + KEL++   E++ +GLKPD  S+N ++        MDEA+  Y+ 
Sbjct: 253 YNARLLGL--ANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKE 310

Query: 298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357
           + ++G  P+  TF   +  +C +G+F+ A ++FKE+     +    T++ LV+ LVK  K
Sbjct: 311 IVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSK 370

Query: 358 IKEAKGVIRTIK 369
            +EA+ +++  K
Sbjct: 371 REEAEEIVKIAK 382

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1

 Score =  201 bits (512), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 175/303 (57%), Gaps = 1/303 (0%)

Query: 68  TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127
           TVRRLA +K+F  +E ++E     P +++E ++  +I  YG+ GMF++A + FD+M E  
Sbjct: 77  TVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERN 136

Query: 128 TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187
             R+ +SFNALL AC  S+ +D V  +F E+P K ++ PD  SY  L+K  C  GS  +A
Sbjct: 137 CKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEA 196

Query: 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247
           + L++E+ENKG++   +T+  +L+  Y +G  EE E++W+ M +K V  D+ +YN R+  
Sbjct: 197 VALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLG 256

Query: 248 -TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
                  E +  L D+++   LKPD  ++  ++  +     +DEA   Y+ +E+NGC P 
Sbjct: 257 LAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPL 316

Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
              F + +  +C +G+ + AY++ KE      + D   ++ +V+ LVK  K  EA+ ++ 
Sbjct: 317 KFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVE 376

Query: 367 TIK 369
             K
Sbjct: 377 LAK 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1

 Score =  191 bits (485), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 209/382 (54%), Gaps = 9/382 (2%)

Query: 15  TAAGSSTTASSISVSKAKSK-----LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTV 69
           +++ S  T  S++  + KS+     L+SE +PD+ L+I  S S      V  R    + V
Sbjct: 24  SSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVD-RIIFSVAV 82

Query: 70  RRLAKSKRFSDIETLIESH-KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128
             LA+ K F  +  L++   +N P    E +    I  YG+A M D +++TF  +++   
Sbjct: 83  VTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEI 142

Query: 129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188
           PR+V S NALLFAC  ++ Y +   ++ E+PK Y + PD  +Y  +++  C+SGS+  + 
Sbjct: 143 PRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSY 202

Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248
            ++ EME K ++ T  ++  +++  YK+   +E  ++   M++ GV + VA YN+ I   
Sbjct: 203 SIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCL 262

Query: 249 YG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
                    K LID +    ++P++++Y+ L+  +C  E +DEA  ++E +  NG  P++
Sbjct: 263 CKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDS 322

Query: 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367
             + T I+ LC  G+F+ A  + +ES+  + +P F+ +K LV GL  + K+ EAK +I  
Sbjct: 323 ECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAV 382

Query: 368 IKKKFPPNVLRAWKKVEEELGL 389
           +K+KF  NV   W +VE  L L
Sbjct: 383 VKEKFTRNV-DLWNEVEAALPL 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 166/302 (54%), Gaps = 1/302 (0%)

Query: 69  VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128
           +RRL ++K+FS I+ +++  K    I  E ++  ++  YG +GM +HA + FD+M EL  
Sbjct: 94  IRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNC 153

Query: 129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188
            R+V SFNALL A   S+  D+    F E+P+K  ++PD ++Y  ++K+ C  GS D  L
Sbjct: 154 ERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDIL 213

Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN- 247
            +  E+E  G E   +++ T+L   Y++    E +R+W  M+ K +  ++ +YN R+   
Sbjct: 214 SIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273

Query: 248 TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
           T          LID M+  G+ PD  +YN L+T Y  +  ++E  K Y  ++E G +P+ 
Sbjct: 274 TRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDT 333

Query: 308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT 367
            T+   I  LC  G+ D+A +V +E++    +   N  K +VE L+   KI EA  +++ 
Sbjct: 334 VTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKN 393

Query: 368 IK 369
            K
Sbjct: 394 GK 395

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 41/347 (11%)

Query: 63  YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ 122
           Y  +  +    K + FS +E +++  K D  +  +     L+    + G    A + FD+
Sbjct: 260 YTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDE 319

Query: 123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182
           M E G    V  + +L+    R     +  +LFDE+ +K  LSP   +YG L+   C  G
Sbjct: 320 MRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEK-GLSPSSYTYGALIDGVCKVG 378

Query: 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN 242
               A  L+NEM++KGV +T V + T+++   ++G  +EA  ++  ME+KG   DV   N
Sbjct: 379 EMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCN 438

Query: 243 -------------------------------VRITNTYG-----GDPERLKELIDEMRDA 266
                                          V  TN        G+ E  K L  EM   
Sbjct: 439 TIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSK 498

Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
           G++P+ I+YN ++  YCK   + EA+K+   +E NG  P++ T+ + I+  C + N D+A
Sbjct: 499 GVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEA 558

Query: 327 YKVFKESVMVHKIPDFNTV--KLLVEGLVKKKKIKEAKGVIRTIKKK 371
            ++F E  M  K  D N+V   +++ GL K  K  EA G+   +K+K
Sbjct: 559 MRLFSE--MGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRK 603

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 103 LIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK 161
           +I + G+ GM F    + FD+M   G     I+FN+LL  C+R  L++    LFDE+  +
Sbjct: 309 VIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR 368

Query: 162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE 221
             +  D  SY  LL + C  G  D A E+L +M  K +    V+Y+TV++   K G  +E
Sbjct: 369 -RIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDE 427

Query: 222 AERLWSEMEKKGVDLDVAAYNVRIT-NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMT 280
           A  L+ EM   G+ LD  +YN  ++  T  G  E   +++ EM   G+K D ++YN L+ 
Sbjct: 428 ALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487

Query: 281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP 340
            Y K    DE KKV+  ++     PN  T+ T I      G + +A ++F+E        
Sbjct: 488 GYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRA 547

Query: 341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVL 377
           D      L++ L K   +  A  +I  + K+   PNV+
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVV 585

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
147840633	416	hypothetical protein VITISV_032192 [Viti	0.985	0.954	0.673	1e-157
225430810	414	PREDICTED: pentatricopeptide repeat-cont	0.985	0.958	0.676	1e-156
297798228	411	pentatricopeptide repeat-containing prot	0.955	0.936	0.667	1e-151
156070795	405	unknown [Solanum bulbocastanum]	0.918	0.913	0.664	1e-150
15234493	412	pentatricopeptide repeat-containing prot	0.955	0.934	0.664	1e-150
2632061	428	membrane-associated salt-inducible prote	0.955	0.899	0.664	1e-150
338762831	417	hypothetical protein 111O18.5 [Coffea ca	0.972	0.940	0.621	1e-149
156070779	406	unknown [Petunia integrifolia subsp. inf	0.977	0.970	0.632	1e-144
156070758	427	unknown [Solanum melongena]	0.972	0.918	0.627	1e-142
224094727	396	predicted protein [Populus trichocarpa]	0.940	0.957	0.622	1e-139

>gi|147840633|emb|CAN68320.1| hypothetical protein VITISV_032192 [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/407 (67%), Positives = 333/407 (81%), Gaps = 10/407 (2%)

Query: 4   LRHIRRLCTATTAAGSSTTASS------ISVSKAKSKLRSEFDPDKALDIYSSVSKHYAS 57
           LRH+R L TA  AA +++TA++      ISVS+AKS LRSEFDPD+AL+IYSSVSKHY S
Sbjct: 9   LRHVRHLSTAAAAAAAASTAAASASSSSISVSRAKSILRSEFDPDRALEIYSSVSKHYTS 68

Query: 58  PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM 117
           P++SRYAQDLTV+RLAKS+RF+DIETLIESHKNDPKITQEPYL  LIRSYG AGMF HA+
Sbjct: 69  PLASRYAQDLTVKRLAKSRRFADIETLIESHKNDPKITQEPYLSTLIRSYGIAGMFQHAL 128

Query: 118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS 177
           RTF+QM+ELGTPRS ISFNALL AC +S+L+D+VP  F+EIP++Y + PDKISYG+L+KS
Sbjct: 129 RTFNQMEELGTPRSSISFNALLSACNQSKLFDQVPKFFEEIPRRYGIXPDKISYGILVKS 188

Query: 178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD 237
           +C+SG SDKA+ +L EME KGVE+T VT+TT+L+ LYKQG ++ AE++W EM KKG  LD
Sbjct: 189 YCESGLSDKAISMLKEMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGC-LD 247

Query: 238 VAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG 297
           V AYNV+I   +GGDPE +K LIDEM +AGLKPDTISYN+LMT YCK+ MMDEAKKVY  
Sbjct: 248 VGAYNVKIMFAHGGDPENVKALIDEMSNAGLKPDTISYNYLMTSYCKSGMMDEAKKVYAE 307

Query: 298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK 357
           LEE GC PNA TFRT IY+LC SG+F+  YKVFK+S    KIPDF T++ LVEGLV+KKK
Sbjct: 308 LEETGCHPNAATFRTLIYYLCRSGDFETGYKVFKQSAFRRKIPDFGTLRHLVEGLVQKKK 367

Query: 358 IKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLV---PAPAVGDGQKA 401
            KEAKG+IRT+KK FP N L  W+K+EE+LGL     +PA  D Q+A
Sbjct: 368 TKEAKGLIRTVKKNFPANFLNVWRKLEEDLGLAGVDSSPAADDVQEA 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430810|ref|XP_002271426.1| PREDICTED: pentatricopeptide repeat-containing protein At4g36680, mitochondrial-like [Vitis vinifera]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/405 (67%), Positives = 331/405 (81%), Gaps = 8/405 (1%)

Query: 4   LRHIRRLCTATTAAGSSTTASS----ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV 59
           LRH+R L TA  AA S+  AS+    ISVS+AKS LRSEFDPD+AL+IYSSVSKHY SP+
Sbjct: 9   LRHVRHLSTAAAAAASTAAASASSSSISVSRAKSILRSEFDPDRALEIYSSVSKHYTSPL 68

Query: 60  SSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
           +SRYAQDLTV+RLAKS+RF+DIETLIESHKNDPKITQEPYL  LIRSYG AGMF HA+RT
Sbjct: 69  ASRYAQDLTVKRLAKSRRFADIETLIESHKNDPKITQEPYLSTLIRSYGIAGMFQHALRT 128

Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC 179
           F+QM+ELGTPRS ISFNALL AC +S+L+D+VP  F+EIP++Y + PDKISYG+L+KS+C
Sbjct: 129 FNQMEELGTPRSSISFNALLSACNQSKLFDQVPKFFEEIPRRYGVLPDKISYGILVKSYC 188

Query: 180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA 239
           +SG SDKA+ +L EME KGVE+T VT+TT+L+ LYKQG ++ AE++W EM KKG  LDV 
Sbjct: 189 ESGLSDKAISMLKEMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGC-LDVG 247

Query: 240 AYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299
           AYNV+I   +GGDPE +K LIDEM +AGLKPDTISYN+LMT YCK+ M+DEAKKVY  LE
Sbjct: 248 AYNVKIMFAHGGDPENVKALIDEMSNAGLKPDTISYNYLMTSYCKSGMVDEAKKVYAELE 307

Query: 300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIK 359
           E GC PNA TFRT IY+LC SG+F+  YKVFK+S    KIPDF T++ LVEGLV+KKK K
Sbjct: 308 ETGCHPNAATFRTLIYYLCRSGDFETGYKVFKQSAFRRKIPDFGTLRHLVEGLVQKKKTK 367

Query: 360 EAKGVIRTIKKKFPPNVLRAWKKVEEELGLV---PAPAVGDGQKA 401
           EAKG+IRT+KK FP N L  W+K+EE+LGL     +PA  D Q+A
Sbjct: 368 EAKGLIRTVKKNFPANFLNVWRKLEEDLGLAGVDSSPAADDVQEA 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798228|ref|XP_002866998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312834|gb|EFH43257.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/391 (66%), Positives = 318/391 (81%), Gaps = 6/391 (1%)

Query: 3   SLRHIRRLCTATTAAGSSTTASS---ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV 59
           SLR +RR  +A  AA  +TTA S   ISVSKAKS LR E DPDKAL IY++VS H ASPV
Sbjct: 7   SLRLVRRFASA--AADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPV 64

Query: 60  SSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
           SSRYAQ+LTVRRLAK +RFSDIETLIESHKNDPKI +EP+   LIRSYG+A MFDHAMRT
Sbjct: 65  SSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGRASMFDHAMRT 124

Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPDKISYGLLLKSH 178
           F+QMD+ GTPRS +SFNALL AC  S+ +DKVP LFDEIP++YN + PDKISYG+L+KS+
Sbjct: 125 FEQMDQYGTPRSAVSFNALLNACLHSKKFDKVPQLFDEIPQRYNKIVPDKISYGILIKSY 184

Query: 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
           CDSGS  KA+E++ +M+ KG+EVTT+ +TT+L+ LYK+G  E AE LW+EM KKG +LD 
Sbjct: 185 CDSGSPQKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVAESLWNEMVKKGCELDN 244

Query: 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
           AAYNVRI +     PER+KELI+EM   GLKPDTISYN+LMT YC+  M+DEAKKVYEGL
Sbjct: 245 AAYNVRIMSAQKESPERVKELIEEMSTMGLKPDTISYNYLMTAYCEKGMLDEAKKVYEGL 304

Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
           E N C+PN+ TFRT I+HLC S  +++ Y +FK+SV +HKIPDFNT+K L  GLV+KKKI
Sbjct: 305 EGNNCAPNSATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLAVGLVEKKKI 364

Query: 359 KEAKGVIRTIKKKFPPNVLRAWKKVEEELGL 389
            +AKG+IRT+KKKFPP+ + AWKK+EEELGL
Sbjct: 365 DDAKGLIRTVKKKFPPSFMNAWKKLEEELGL 395

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156070795|gb|ABU45207.1| unknown [Solanum bulbocastanum]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 246/370 (66%), Positives = 308/370 (83%)

Query: 25  SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETL 84
           +IS+SKAKSKL++E DPDKAL+IYSSVS  Y SP+SSRYAQ+ TV+RLAKS RFSDIE  
Sbjct: 30  TISISKAKSKLKAEHDPDKALEIYSSVSDRYVSPLSSRYAQEFTVKRLAKSHRFSDIENF 89

Query: 85  IESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR 144
           +ESHKN PKITQEP+L ++IRSYG AGMFDHA++ + QMD+LGTPRS ISFN LL AC R
Sbjct: 90  LESHKNSPKITQEPFLSSIIRSYGVAGMFDHALKIYHQMDDLGTPRSAISFNVLLSACVR 149

Query: 145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTV 204
           S+LYD+VP LFDEIP KY   PDK+SYG+L++S+C+ GS + A+E L EME KGVE+T+V
Sbjct: 150 SKLYDRVPQLFDEIPVKYGFLPDKVSYGILIRSYCEMGSPEMAMERLKEMEEKGVEITSV 209

Query: 205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMR 264
           T+TT+L+  YK+  ++EAE++W+EM  +G   DV AYNV+I N  GGDPE +K LI+EM 
Sbjct: 210 TFTTILHSFYKKRKSDEAEKVWNEMVNRGCGPDVGAYNVKIMNIQGGDPEGVKALIEEMN 269

Query: 265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFD 324
           DAGLKPDTISYN+LMTCYC+NE++DEA+KVY+ LE+NGC+PNA TFRT I++LC  G F+
Sbjct: 270 DAGLKPDTISYNYLMTCYCRNELIDEAQKVYDDLEKNGCNPNAATFRTLIFYLCKKGRFE 329

Query: 325 KAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE 384
             YKVFKESV V KIPDF+T+K LVEGL KK K+K+AKG+ RT+KKKFPPN+++AW K+E
Sbjct: 330 TGYKVFKESVKVQKIPDFDTLKYLVEGLAKKSKLKDAKGMCRTVKKKFPPNLIKAWTKIE 389

Query: 385 EELGLVPAPA 394
           EELGL  A A
Sbjct: 390 EELGLAKAEA 399

Source: Solanum bulbocastanum

Species: Solanum bulbocastanum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234493|ref|NP_195386.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75181418|sp|Q9M065.1|PP352_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g36680, mitochondrial; Flags: Precursor gi|2464912|emb|CAB16807.1| salt-inducible like protein [Arabidopsis thaliana] gi|7270616|emb|CAB80334.1| salt-inducible like protein [Arabidopsis thaliana] gi|17381286|gb|AAL36061.1| C7A10_680/C7A10_680 [Arabidopsis thaliana] gi|24111267|gb|AAN46757.1| At4g36680/C7A10_680 [Arabidopsis thaliana] gi|332661286|gb|AEE86686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/391 (66%), Positives = 318/391 (81%), Gaps = 6/391 (1%)

Query: 3   SLRHIRRLCTATTAAGSSTTASS---ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV 59
           SLR +RR  +A  AA  +TTA S   ISVSKAKS LR E DPDKAL IY++VS H ASPV
Sbjct: 7   SLRLVRRFASA--AADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPV 64

Query: 60  SSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
           SSRYAQ+LTVRRLAK +RFSDIETLIESHKNDPKI +EP+   LIRSYGQA MF+HAMRT
Sbjct: 65  SSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRT 124

Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPDKISYGLLLKSH 178
           F+QMD+ GTPRS +SFNALL AC  S+ +DKVP LFDEIP++YN + PDKISYG+L+KS+
Sbjct: 125 FEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSY 184

Query: 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
           CDSG+ +KA+E++ +M+ KG+EVTT+ +TT+L+ LYK+G  E A+ LW+EM KKG +LD 
Sbjct: 185 CDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN 244

Query: 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
           AAYNVRI +     PER+KELI+EM   GLKPDTISYN+LMT YC+  M+DEAKKVYEGL
Sbjct: 245 AAYNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGL 304

Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
           E N C+PNA TFRT I+HLC S  +++ Y +FK+SV +HKIPDFNT+K LV GLV+ KK 
Sbjct: 305 EGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKR 364

Query: 359 KEAKGVIRTIKKKFPPNVLRAWKKVEEELGL 389
            +AKG+IRT+KKKFPP+ L AWKK+EEELGL
Sbjct: 365 DDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2632061|emb|CAA05629.1| membrane-associated salt-inducible protein like [Arabidopsis thaliana]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/391 (66%), Positives = 318/391 (81%), Gaps = 6/391 (1%)

Query: 3   SLRHIRRLCTATTAAGSSTTASS---ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV 59
           SLR +RR  +A  AA  +TTA S   ISVSKAKS LR E DPDKAL IY++VS H ASPV
Sbjct: 23  SLRLVRRFASA--AADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPV 80

Query: 60  SSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT 119
           SSRYAQ+LTVRRLAK +RFSDIETLIESHKNDPKI +EP+   LIRSYGQA MF+HAMRT
Sbjct: 81  SSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRT 140

Query: 120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPDKISYGLLLKSH 178
           F+QMD+ GTPRS +SFNALL AC  S+ +DKVP LFDEIP++YN + PDKISYG+L+KS+
Sbjct: 141 FEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSY 200

Query: 179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
           CDSG+ +KA+E++ +M+ KG+EVTT+ +TT+L+ LYK+G  E A+ LW+EM KKG +LD 
Sbjct: 201 CDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN 260

Query: 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL 298
           AAYNVRI +     PER+KELI+EM   GLKPDTISYN+LMT YC+  M+DEAKKVYEGL
Sbjct: 261 AAYNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGL 320

Query: 299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI 358
           E N C+PNA TFRT I+HLC S  +++ Y +FK+SV +HKIPDFNT+K LV GLV+ KK 
Sbjct: 321 EGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKR 380

Query: 359 KEAKGVIRTIKKKFPPNVLRAWKKVEEELGL 389
            +AKG+IRT+KKKFPP+ L AWKK+EEELGL
Sbjct: 381 DDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338762831|gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/404 (62%), Positives = 317/404 (78%), Gaps = 12/404 (2%)

Query: 3   SLRHIRRLCTATT------------AAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSS 50
           +L H R L T+              +  +ST  S+IS S+AKS+LR  +DPDKAL+IYSS
Sbjct: 6   ALHHGRHLSTSAAAAAAAAVEAAGASTATSTKPSTISTSRAKSQLRYVYDPDKALEIYSS 65

Query: 51  VSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA 110
           VS +Y SP+SSRY Q+ TVRRLAKS RFSDIE+ +ESHKNDPKITQEP+L +LIRSYG A
Sbjct: 66  VSPNYTSPLSSRYTQEYTVRRLAKSHRFSDIESFLESHKNDPKITQEPFLSSLIRSYGLA 125

Query: 111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170
           GMFDHA++TF++MD+LGTPRS +SFNALL AC  S+ + + P LFDE+P++Y LSPDK S
Sbjct: 126 GMFDHALKTFNEMDDLGTPRSTVSFNALLSACNSSKNFGRAPELFDEVPQRYGLSPDKFS 185

Query: 171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230
           YG L+K++C+ GS + ALE L EME KG+E+T VT+TT+++  YK+G  EEAER+WSEM 
Sbjct: 186 YGNLIKAYCEMGSPESALERLKEMEEKGIEITAVTFTTIMHSFYKKGKNEEAERVWSEMV 245

Query: 231 KKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDE 290
           K+G  +DV AYNVRI + +G DP+ +K LI+E+  AGLKPDTISYN+LMT YCK+ MMDE
Sbjct: 246 KRGCPIDVGAYNVRIMHIHGEDPDSVKGLIEEISSAGLKPDTISYNYLMTSYCKSGMMDE 305

Query: 291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE 350
           A KVYE LE NGC PNA TFRT I++LC    F+  YKVFKESV VHKIPDFNT+K L+E
Sbjct: 306 AFKVYEDLEGNGCKPNAATFRTLIFYLCKRQRFETGYKVFKESVAVHKIPDFNTLKHLLE 365

Query: 351 GLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPA 394
           GLVK+ K KEAKG+IRT+KKKFPPNV++AW+++++ELGLV   A
Sbjct: 366 GLVKRSKFKEAKGMIRTVKKKFPPNVVKAWERLQKELGLVSVEA 409

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156070779|gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/395 (63%), Positives = 319/395 (80%), Gaps = 1/395 (0%)

Query: 3   SLRHIRRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR 62
           + RH R L T T AA +++T ++IS+SKAKSKL++E DPDK L+IYSSVS  Y SP+SSR
Sbjct: 6   AFRHARHLSTTTAAAATTSTTATISISKAKSKLKAEHDPDKVLEIYSSVSDRYISPLSSR 65

Query: 63  YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ 122
           YAQ+ TV+RLAKS RFSDIE+ +ESHKN  KITQEP+L ++IRSYG AGMFDHA++ +DQ
Sbjct: 66  YAQEYTVKRLAKSHRFSDIESFLESHKNSSKITQEPFLSSIIRSYGIAGMFDHALKIYDQ 125

Query: 123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182
           MD+LGTPRS ISFN LL AC  ++ YD+V  LFDE+P KY   PDK+SYG+L++S+C+ G
Sbjct: 126 MDDLGTPRSAISFNVLLSACVNTKQYDRVRQLFDEMPVKYGFLPDKVSYGILIRSYCEMG 185

Query: 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN 242
             +KA+E L EME KGVE+T +T+TT+L+  YK+G  +EAE++W+EM  KG   DV AYN
Sbjct: 186 LPEKAMERLKEMEEKGVEITAITFTTLLHAFYKKGMGDEAEKVWNEMVNKGCGPDVGAYN 245

Query: 243 VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
           V+I N  GGDPE +K LI+EM +AGLKPDTISYN+LMTCYC+N +MDEA+KVYE LE NG
Sbjct: 246 VKIRNIQGGDPEGVKALIEEMNNAGLKPDTISYNYLMTCYCENGLMDEAQKVYEDLETNG 305

Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
           C+PNA TFR+ I +LC  G F+  YKVFKESV V+K+PDFNT+K LVEGLVK++K+K+AK
Sbjct: 306 CNPNAATFRSLILYLCKKGRFETGYKVFKESVRVNKMPDFNTLKCLVEGLVKREKLKDAK 365

Query: 363 GVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGD 397
           G+ RT+KKKFPPN+++AW K+EEELGL     VGD
Sbjct: 366 GMSRTVKKKFPPNLVKAWAKLEEELGLAKV-EVGD 399

Source: Petunia integrifolia subsp. inflata

Species: Petunia integrifolia

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156070758|gb|ABU45173.1| unknown [Solanum melongena]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/392 (62%), Positives = 310/392 (79%)

Query: 3   SLRHIRRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR 62
           +LR  R L TA  AA  S +A++IS+SKAKSKL++E DPDKAL+IYSSVS  Y SP+SSR
Sbjct: 6   ALRQARHLTTAAAAAAESASAATISISKAKSKLKAEHDPDKALEIYSSVSDRYISPLSSR 65

Query: 63  YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ 122
           YAQ+  V+RLAKS RFSDIE  +ESHKN PKITQEP+L ++IRSYG A MFDHA++ + Q
Sbjct: 66  YAQEYIVKRLAKSHRFSDIENFLESHKNSPKITQEPFLSSIIRSYGVARMFDHALKIYHQ 125

Query: 123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG 182
           MD+LGTPRS ISFN LL AC  S+LYD+V  LFDEIP KY   PDK+SYG+L++S+C+ G
Sbjct: 126 MDDLGTPRSAISFNVLLSACMHSKLYDRVAQLFDEIPVKYGFLPDKVSYGVLIRSYCEMG 185

Query: 183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYN 242
             + A+E   EME KGVE+T V +TT+L+  YK+G ++EAER+W+EM  +G   DV AYN
Sbjct: 186 LPEMAMERFKEMEEKGVEITAVAFTTILHSFYKKGKSDEAERVWNEMVSRGCGPDVGAYN 245

Query: 243 VRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
           V+I N  G  PE +K LI+EM +AGLKPDTISYN+LMTCYCKN++MDEA+KVYE L+ NG
Sbjct: 246 VKIMNIQGSKPEGVKALIEEMSNAGLKPDTISYNYLMTCYCKNQLMDEAQKVYEDLKTNG 305

Query: 303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK 362
           C+PNA TFRT I++LC  G F+  YKVF+ESV VHKIPDF T+K LVEGLVKK + ++AK
Sbjct: 306 CNPNAATFRTLIFYLCKKGRFETGYKVFRESVSVHKIPDFITLKYLVEGLVKKSRWRDAK 365

Query: 363 GVIRTIKKKFPPNVLRAWKKVEEELGLVPAPA 394
           G+ RT+KKKFPPN+++AW K+EE+LGL    A
Sbjct: 366 GMSRTVKKKFPPNLVKAWIKLEEDLGLAKVEA 397

Source: Solanum melongena

Species: Solanum melongena

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094727|ref|XP_002310210.1| predicted protein [Populus trichocarpa] gi|222853113|gb|EEE90660.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/389 (62%), Positives = 307/389 (78%), Gaps = 10/389 (2%)

Query: 2   TSLRHIRRLCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASP-VS 60
           ++LRH+R L         STT   IS++KAKS+LR+E DPDKAL I+SS S + +SP V 
Sbjct: 3   STLRHLRHL---------STTTQKISITKAKSRLRTEHDPDKALAIFSSASSNDSSPPVV 53

Query: 61  SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF 120
           SRYAQDLTVRRLAKS RF+DIE+L+ESHK+DPKI QEP+L +LIRSYG AGMFD A++T+
Sbjct: 54  SRYAQDLTVRRLAKSHRFADIESLMESHKSDPKIKQEPFLSSLIRSYGVAGMFDQALKTY 113

Query: 121 DQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180
            +MD+LGTPRS ISFNALL AC +S+LY KVP+LF+EI +KY + PD +SYG+L+K++C+
Sbjct: 114 QEMDQLGTPRSCISFNALLSACIQSKLYKKVPVLFNEISEKYRVLPDTVSYGMLVKAYCE 173

Query: 181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
            G  +KA+E+L EME KGVEVT +  T VLNCLY +G  +EAER    M ++G +LD   
Sbjct: 174 DGKPEKAIEVLGEMEKKGVEVTAIVCTPVLNCLYSKGKKDEAERFLDGMVERGCELDAVV 233

Query: 241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
           YNV+I+N     PER+KELI+EM   GLKPDTISYN+LMT YC + MM+EAKKVYE    
Sbjct: 234 YNVKISNAVSQGPERVKELIEEMESYGLKPDTISYNYLMTSYCTSGMMEEAKKVYEEFRV 293

Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE 360
           +GC  NA TFRT +++LC SG ++K Y++FK+SV VH+IPDFNT+K LV+GLV+KKKIKE
Sbjct: 294 HGCKANAATFRTLVFNLCKSGEYEKGYEIFKDSVKVHRIPDFNTLKYLVKGLVEKKKIKE 353

Query: 361 AKGVIRTIKKKFPPNVLRAWKKVEEELGL 389
           AKG+IRT+KKKFP N+L AWKKVEE LGL
Sbjct: 354 AKGLIRTMKKKFPLNLLNAWKKVEENLGL 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2115375	412	AT4G36680 [Arabidopsis thalian	0.960	0.939	0.583	3.7e-119
TAIR|locus:2046288	418	AT2G18520 [Arabidopsis thalian	0.903	0.870	0.559	4e-106
TAIR|locus:2036833	408	PPR336 "pentatricopeptide repe	0.870	0.860	0.307	2.9e-48
TAIR|locus:2090034	394	AT3G13160 [Arabidopsis thalian	0.657	0.672	0.345	9.1e-45
TAIR|locus:2012120	398	AT1G55890 [Arabidopsis thalian	0.665	0.673	0.353	3.5e-43
TAIR|locus:2027387	405	AT1G11630 [Arabidopsis thalian	0.875	0.871	0.288	4.2e-40
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.669	0.490	0.323	3.7e-39
TAIR|locus:2016249	397	AT1G80150 "AT1G80150" [Arabido	0.843	0.856	0.293	1e-36
TAIR|locus:2095309	687	AT3G09060 "AT3G09060" [Arabido	0.734	0.430	0.269	2.3e-26
TAIR|locus:2060226	624	AT2G32630 "AT2G32630" [Arabido	0.655	0.423	0.274	1.3e-25

TAIR|locus:2115375 AT4G36680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 227/389 (58%), Positives = 275/389 (70%)

Query:     3 SLRHIRRLCXXXXXXXXXX-XXXXXXXXXXXXXLRSEFDPDKALDIYSSVSKHYASPVSS 61
             SLR +RR                          LR E DPDKAL IY++VS H ASPVSS
Sbjct:     7 SLRLVRRFASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIYANVSDHSASPVSS 66

Query:    62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFD 121
             RYAQ+LTVRRLAK +RFSDIETLIESHKNDPKI +EP+   LIRSYGQA MF+HAMRTF+
Sbjct:    67 RYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFE 126

Query:   122 QMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPDKISYGLLLKSHCD 180
             QMD+ GTPRS +SFNALL AC  S+ +DKVP LFDEIP++YN + PDKISYG+L+KS+CD
Sbjct:   127 QMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCD 186

Query:   181 SGSSDKALELLNEMENKGXXXXXXXXXXXLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA 240
             SG+ +KA+E++ +M+ KG           L+ LYK+G  E A+ LW+EM KKG +LD AA
Sbjct:   187 SGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAA 246

Query:   241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE 300
             YNVRI +     PER+KELI+EM   GLKPDTISYN+LMT YC+  M+DEAKKVYEGLE 
Sbjct:   247 YNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEG 306

Query:   301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTXXXXXXXXXXXXXXXX 360
             N C+PNA TFRT I+HLC S  +++ Y +FK+SV +HKIPDFNT                
Sbjct:   307 NNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDD 366

Query:   361 XXXXXRTIKKKFPPNVLRAWKKVEEELGL 389
                  RT+KKKFPP+ L AWKK+EEELGL
Sbjct:   367 AKGLIRTVKKKFPPSFLNAWKKLEEELGL 395

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2046288 AT2G18520 [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 208/372 (55%), Positives = 257/372 (69%)

Query:    35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI 94
             LR   DPDKAL IY SVS +  SP+SSRYA +LTV+RLAKS+RFSDIE LIESHKN+PKI
Sbjct:    40 LRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKI 99

Query:    95 TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL 154
               E +L  LIRSYG+A MFDHAM+ F++MD+LGTPR+V+SFNALL AC  S L+++VP L
Sbjct:   100 KTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQL 159

Query:   155 FDEIPKKYN-LSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGXXXXXXXXXXXLNCL 213
             FDE P++YN ++PDKISYG+L+KS+CDSG  +KA+E++ +ME KG           L  L
Sbjct:   160 FDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSL 219

Query:   214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTI 273
             YK G  +EAE LW EM  KG DLD   YNVR+ N     PER+KEL++EM   GLKPDT+
Sbjct:   220 YKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAKESPERVKELMEEMSSVGLKPDTV 279

Query:   274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES 333
             SYN+LMT YC   MM EAKKVYEGLE+    PNA TFRT I+HLC +G +D+   VFK+S
Sbjct:   280 SYNYLMTAYCVKGMMSEAKKVYEGLEQ----PNAATFRTLIFHLCINGLYDQGLTVFKKS 335

Query:   334 VMVHKIPDFNTXXXXXXXXXXXXXXXXXXXXXRTIKKKFPPNVLRAWKKVEEELGLVP-- 391
              +VHKIPDF T                     R +KKKFPP ++  WKK+EE+LGL    
Sbjct:   336 AIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKLGLYSKG 395

Query:   392 -APAVGDGQKAR 402
              A AV    + R
Sbjct:   396 NAAAVSSSSQTR 407

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2036833 PPR336 "pentatricopeptide repeat 336" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 109/355 (30%), Positives = 187/355 (52%)

Query:    35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESH-KNDPK 93
             L+SE DPD+ L+I  + S      +  R A    V  LA+ K FS +  L++   +N P 
Sbjct:    54 LKSEKDPDRILEICRAASLTPDCRID-RIAFSAAVENLAEKKHFSAVSNLLDGFIENRPD 112

Query:    94 ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI 153
             +  E +  + I  Y QA M DH++R F  +++    R+V S NALLFAC  ++ Y +   
Sbjct:   113 LKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKR 172

Query:   154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGXXXXXXXXXXXLNCL 213
             ++ E+PK Y + PD  +Y  ++K  C+SGS+  +  ++ EME KG           ++  
Sbjct:   173 VYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGF 232

Query:   214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPER-LKELIDEMRDAGLKPDT 272
             Y +  ++E  ++ + M+ +GV++ V+ YN+RI +       +  K L+D M  AG+KP+T
Sbjct:   233 YAEDKSDEVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNT 292

Query:   273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332
             ++Y+ L+  +C  +  +EAKK+++ +   GC P++  + T IY+LC  G+F+ A  + KE
Sbjct:   293 VTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKE 352

Query:   333 SVMVHKIPDFNTXXXXXXXXXXXXXXXXXXXXXRTIKKKFPPNVLRAWKKVEEEL 387
             S+  + +P F+                        +K+KF  NV   W +VE  L
Sbjct:   353 SMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNV-ELWNEVEAAL 406

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2090034 AT3G13160 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 92/266 (34%), Positives = 152/266 (57%)

Query:    68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG 127
             TVRRLA +K+F  +E ++E     P +++E ++  +I  YG+ GMF++A + FD+M E  
Sbjct:    77 TVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERN 136

Query:   128 TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187
               R+ +SFNALL AC  S+ +D V  +F E+P K ++ PD  SY  L+K  C  GS  +A
Sbjct:   137 CKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEA 196

Query:   188 LELLNEMENKGXXXXXXXXXXXLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN 247
             + L++E+ENKG           L+  Y +G  EE E++W+ M +K V  D+ +YN R+  
Sbjct:   197 VALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLG 256

Query:   248 -TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
                    E +  L D+++   LKPD  ++  ++  +     +DEA   Y+ +E+NGC P 
Sbjct:   257 LAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPL 316

Query:   307 ATTFRTWIYHLCGSGNFDKAYKVFKE 332
                F + +  +C +G+ + AY++ KE
Sbjct:   317 KFVFNSLLPAICKAGDLESAYELCKE 342

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2012120 AT1G55890 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 95/269 (35%), Positives = 154/269 (57%)

Query:    66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDE 125
             D TVRRL  +KR   +E ++E  K    +++E +   +I  YG+AGMF++A + F++M  
Sbjct:    78 DRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPN 137

Query:   126 LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD 185
                 RSV+SFNALL A   S+ +D V  LF+E+P K ++ PD +SY  L+K+ C+  S  
Sbjct:   138 RDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLP 197

Query:   186 KALELLNEMENKGXXXXXXXXXXXLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245
             +A+ LL+E+ENKG           L   Y +G  E  E +W++M +K V +D+  YN R+
Sbjct:   198 EAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARL 257

Query:   246 TNTYG-GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS 304
                      + L  L  E++ +GLKPD  S+N ++        MDEA+  Y+ + ++G  
Sbjct:   258 LGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYR 317

Query:   305 PNATTFRTWIYHLCGSGNFDKAYKVFKES 333
             P+  TF   +  +C +G+F+ A ++FKE+
Sbjct:   318 PDKATFALLLPAMCKAGDFESAIELFKET 346

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027387 AT1G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 103/357 (28%), Positives = 177/357 (49%)

Query:    35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESH-KNDPK 93
             L+SE +PD+ L+I  S S      V  R    + V  LA+ K F  +  L++   +N P 
Sbjct:    49 LKSENNPDRILEICRSTSLSPDYHVD-RIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPD 107

Query:    94 ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI 153
                E +    I  YG+A M D +++TF  +++   PR+V S NALLFAC  ++ Y +   
Sbjct:   108 PKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANR 167

Query:   154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGXXXXXXXXXXXLNCL 213
             ++ E+PK Y + PD  +Y  +++  C+SGS+  +  ++ EME K            ++  
Sbjct:   168 VYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGF 227

Query:   214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPE-RLKELIDEMRDAGLKPDT 272
             YK+   +E  ++   M++ GV + VA YN+ I            K LID +    ++P++
Sbjct:   228 YKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNS 287

Query:   273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332
             ++Y+ L+  +C  E +DEA  ++E +  NG  P++  + T I+ LC  G+F+ A  + +E
Sbjct:   288 VTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRE 347

Query:   333 SVMVHKIPDFNTXXXXXXXXXXXXXXXXXXXXXRTIKKKFPPNVLRAWKKVEEELGL 389
             S+  + +P F+                        +K+KF  NV   W +VE  L L
Sbjct:   348 SMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNV-DLWNEVEAALPL 403

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 88/272 (32%), Positives = 147/272 (54%)

Query:    69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT 128
             +RRL ++K+FS I+ +++  K    I  E ++  ++  YG +GM +HA + FD+M EL  
Sbjct:    94 IRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNC 153

Query:   129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL 188
              R+V SFNALL A   S+  D+    F E+P+K  ++PD ++Y  ++K+ C  GS D  L
Sbjct:   154 ERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDIL 213

Query:   189 ELLNEMENKGXXXXXXXXXXXLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN- 247
              +  E+E  G           L   Y++    E +R+W  M+ K +  ++ +YN R+   
Sbjct:   214 SIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273

Query:   248 TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
             T          LID M+  G+ PD  +YN L+T Y  +  ++E  K Y  ++E G +P+ 
Sbjct:   274 TRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDT 333

Query:   308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI 339
              T+   I  LC  G+ D+A +V +E++  HK+
Sbjct:   334 VTYCMLIPLLCKKGDLDRAVEVSEEAIK-HKL 364

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016249 AT1G80150 "AT1G80150" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 105/358 (29%), Positives = 167/358 (46%)

Query:     1 MTSLRHIRRLCXXXXXXXXXXXXXXXXXXX----------XXXXLRSEFDPDKALDIYSS 50
             M SLRHIRR C                                 L+SE DP+K  +++ +
Sbjct:     1 MLSLRHIRRFCHFPSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKA 60

Query:    51 VSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA 110
              + +    + +R+A + TV RLA + R   IE L+E  K  P+  +E ++  +I  YG+A
Sbjct:    61 NATNRLV-IENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKA 119

Query:   111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS 170
             GM   A+ TF  MD  G  RSV SFNA L   + +     +     + P KY +  D +S
Sbjct:   120 GMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVS 179

Query:   171 YGLLLKSHCDSGSSDKALELLNEMENKGXXXXXXXXXXXLNCLYKQGNAEEAERLWSEME 230
             + + +KS C+ G  D A   + EME  G           ++ LYK         LW+ M 
Sbjct:   180 FNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIGNGLWNLMV 239

Query:   231 KKGVDLDVAAYNVRI----TNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE 286
              KG   ++  +NVRI          D   L  L+ +++   ++PD+I+YN ++  +    
Sbjct:   240 LKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQ---VEPDSITYNMVIKGFFLAR 296

Query:   287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT 344
               D A++VY  +   G  PN   ++T I++LC +GNFD AY + K+ +     P+ +T
Sbjct:   297 FPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPNLDT 354

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 81/301 (26%), Positives = 153/301 (50%)

Query:    35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI 94
             L+SE +P  A  ++ S ++H     S+     + +RRL++++  + +  ++E  ++    
Sbjct:    17 LKSEKNPRAAFALFDSATRHPGYAHSAVVYHHI-LRRLSETRMVNHVSRIVELIRSQECK 75

Query:    95 TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-GTPRSVISFNALLFACTRSRLYDKVPI 153
               E    ++I++YG+  M D A+  F +M E+ G   ++ S+N LL A   ++ + KV  
Sbjct:    76 CDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVES 135

Query:   154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGXXXXXXXXXXXLNCL 213
             LF    +   ++P+  +Y +L+K  C     +KA   L+ M  +G           +N L
Sbjct:   136 LFAYF-ETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDL 194

Query:   214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGG-DPERLKELIDEM-RDAGLKPD 271
              K G  ++A  L+ EM ++GV  DV  YN+ I       D +   EL D +  D+ + P+
Sbjct:   195 AKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPN 254

Query:   272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK 331
               ++N +++   K   +D+  K++E +++N    +  T+ + I+ LC +GN DKA  VF 
Sbjct:   255 VKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFN 314

Query:   332 E 332
             E
Sbjct:   315 E 315

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 74/270 (27%), Positives = 128/270 (47%)

Query:    63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ 122
             Y  +  +    K + FS +E +++  K D  +  +     L+    + G    A + FD+
Sbjct:   260 YTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDE 319

Query:   123 MDELGTPRSVISFNALL-FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS 181
             M E G    V  + +L+ + C +  +  +  +LFDE+ +K  LSP   +YG L+   C  
Sbjct:   320 MRERGIESDVHVYTSLISWNCRKGNM-KRAFLLFDELTEK-GLSPSSYTYGALIDGVCKV 377

Query:   182 GSSDKALELLNEMENKGXXXXXXXXXXXLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY 241
             G    A  L+NEM++KG           ++   ++G  +EA  ++  ME+KG   DV   
Sbjct:   378 GEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTC 437

Query:   242 NVRITNTYGGDP--ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE 299
             N  I + +      +  K+ +  M + G+K  T+SY  L+  YCK   ++EAK+++  + 
Sbjct:   438 NT-IASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMS 496

Query:   300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKV 329
               G  PNA T+   IY  C  G   +A K+
Sbjct:   497 SKGVQPNAITYNVMIYAYCKQGKIKEARKL 526

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M065	PP352_ARATH	No assigned EC number	0.6649	0.9553	0.9344	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__401__AT4G36680.1 annotation not avaliable (411 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-21
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-17
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-12
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	3e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-05
pfam01535	31	pfam01535, PPR, PPR repeat	4e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	4e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 96.1 bits (239), Expect = 3e-21
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 25/217 (11%)

Query: 129 PRSVISFNALLFACTRS----RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS 184
           P  V+ FNAL+ AC +S    R +D   +L +   + + + PD I+ G L+K+  ++G  
Sbjct: 540 PDRVV-FNALISACGQSGAVDRAFD---VLAEMKAETHPIDPDHITVGALMKACANAGQV 595

Query: 185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD--------- 235
           D+A E+   +    ++ T   YT  +N   ++G+ + A  ++ +M+KKGV          
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655

Query: 236 LDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVY 295
           +DVA         + GD ++  E++ + R  G+K  T+SY+ LM      +   +A ++Y
Sbjct: 656 VDVAG--------HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707

Query: 296 EGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332
           E ++     P  +T    I  LC      KA +V  E
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 82.6 bits (204), Expect = 6e-17
 Identities = 51/217 (23%), Positives = 106/217 (48%), Gaps = 3/217 (1%)

Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
           L+++   AG  D A   +  + E     +   +   + +C++   +D    ++D++ KK 
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK- 643

Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA 222
            + PD++ +  L+     +G  DKA E+L +   +G+++ TV+Y++++       N ++A
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

Query: 223 ERLWSEMEKKGVDLDVAAYNVRITNTYGGDP-ERLKELIDEMRDAGLKPDTISYNFLMTC 281
             L+ +++   +   V+  N  IT    G+   +  E++ EM+  GL P+TI+Y+ L+  
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763

Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318
             + +  D    +    +E+G  PN    R  I  LC
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLC 799

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 50/279 (17%)

Query: 101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK 160
           C LI  Y + G  + A   FD M E    ++ +++N++L                     
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSML--------------------- 297

Query: 161 KYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE 220
                     Y L        G S++AL L  EM + GV +   T++ ++    +    E
Sbjct: 298 --------AGYAL-------HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342

Query: 221 EAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPDTISYNFL 278
            A++  + + + G  LD+ A N  + + Y   G  E  + + D M    L    IS+N L
Sbjct: 343 HAKQAHAGLIRTGFPLDIVA-NTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNAL 397

Query: 279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK 338
           +  Y  +    +A +++E +   G +PN  TF   +     SG  ++ +++F+     H+
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457

Query: 339 I-PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV 376
           I P       ++E L ++  + EA  +IR  +  F P V
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYAMIR--RAPFKPTV 494

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC 318
           PD ++YN L+  YCK   ++EA K++  +++ G  PN  T+   I  LC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 1/142 (0%)

Query: 97  EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD 156
           E +   L+   G AG  D A        + G     +S+++L+ AC+ ++ + K   L++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ 216
           +I K   L P   +   L+ + C+     KALE+L+EM+  G+   T+TY+ +L    ++
Sbjct: 709 DI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767

Query: 217 GNAEEAERLWSEMEKKGVDLDV 238
            +A+    L S+ ++ G+  ++
Sbjct: 768 DDADVGLDLLSQAKEDGIKPNL 789

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 7e-11
 Identities = 17/50 (34%), Positives = 32/50 (64%)

Query: 166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK 215
           PD ++Y  L+  +C  G  ++AL+L NEM+ +G++    TY+ +++ L K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 134 SFNALLFACTRSRLYD---KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALEL 190
           +FN L+  C  S+  D   +V  L  E      L  D   Y  L+ +   SG  D   E+
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQE----AGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 191 LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TY 249
            +EM N GVE    T+  +++   + G   +A   +  M  K V  D   +N  I+    
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 250 GGDPERLKELIDEMRDAG--LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
            G  +R  +++ EM+     + PD I+   LM        +D AK+VY+ + E       
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614

Query: 308 TTFRTWIYHLCG-SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
             + T   + C   G++D A  ++ +       PD      LV+       + +A  +++
Sbjct: 615 EVY-TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

Query: 367 TIKKK 371
             +K+
Sbjct: 674 DARKQ 678

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 30/43 (69%)

Query: 203 TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI 245
            VTY T+++   K+G  EEA +L++EM+K+G+  +V  Y++ I
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 66/305 (21%), Positives = 120/305 (39%), Gaps = 45/305 (14%)

Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC------TRSR---------- 146
           L+  Y +AG FD A+  + +M   G    V +F  +L  C       R R          
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217

Query: 147 -------------LYDK------VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA 187
                        +Y K        ++FD +P++     D IS+  ++  + ++G   + 
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEG 272

Query: 188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI-T 246
           LEL   M    V+   +T T+V++     G+      +   + K G  +DV+  N  I  
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332

Query: 247 NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN 306
               G     +++   M       D +S+  +++ Y KN + D+A + Y  +E++  SP+
Sbjct: 333 YLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

Query: 307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIR 366
             T  + +      G+ D   K+ + +     I        L+E   K K I +A  V  
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448

Query: 367 TIKKK 371
            I +K
Sbjct: 449 NIPEK 453

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA 307
           ++YN L+   CK   ++EA ++++ ++E G  P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 60/300 (20%), Positives = 127/300 (42%), Gaps = 27/300 (9%)

Query: 41  PDKALDIYSSVSKHYASPVSSRYAQDLTVRR-LAKSKRFSDIETLIESHKNDPKITQEPY 99
           PDKAL+ Y+ + +   SP       ++T+   L+      D++  ++ H+   +     Y
Sbjct: 370 PDKALETYALMEQDNVSP------DEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423

Query: 100 LC---NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRLYDKVPILF 155
           +     LI  Y +    D A+  F  + E    + VIS+ +++      +R ++ + I F
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL-IFF 478

Query: 156 DEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK 215
            ++     L P+ ++    L +    G+     E+   +   G+         +L+   +
Sbjct: 479 RQM--LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536

Query: 216 QGNAEEAERLWSEMEKKGVDLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTIS 274
            G    A   ++  EK     DV ++N+ +T     G      EL + M ++G+ PD ++
Sbjct: 537 CGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

Query: 275 YNFLMTCYC-KNEMMDEAKKVYEGLEEN-GCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332
           +  L+ C C ++ M+ +  + +  +EE    +PN   +   +  L  +G   +AY    +
Sbjct: 592 FISLL-CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234
           VTY ++++   K G  EEA  L+ EM++KGV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.8 bits (102), Expect = 4e-06
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV 238
           VTY T+++ L K G  EEA  L+ EM+++G++ DV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 46/261 (17%), Positives = 83/261 (31%), Gaps = 5/261 (1%)

Query: 76  KRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISF 135
           K       ++              L   +      G    A+   ++  EL     +   
Sbjct: 2   KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61

Query: 136 NALLFACTRSRL-YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM 194
             LL          ++   L ++  +   L     +   L       G  ++ALELL + 
Sbjct: 62  LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121

Query: 195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS---EMEKKGVDLDVAAYNVRITNTYGG 251
                +         L  LY+ G+ EEA  L+    E++ +  +L  A   +       G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181

Query: 252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR 311
             E   EL+++        D  +   L   Y K    +EA + YE   E     NA    
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALY 240

Query: 312 TWIYHLCGSGNFDKAYKVFKE 332
                L   G +++A +  ++
Sbjct: 241 NLALLLLELGRYEEALEALEK 261

Length = 291

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 175 LKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN-CLYKQGNAEEAERLWSEMEKKG 233
           L++ C  G  ++AL+LL  M+   V V    Y  +   C +K+   EE  R+ S      
Sbjct: 58  LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-VEEGSRVCSR----- 111

Query: 234 VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKP--DTISYNFLMTCYCKNEMMDEA 291
                 +  VR+ N       R  EL+      G  P  D  S+N L+  Y K    DEA
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171

Query: 292 KKVYEGLEENGCSPNATTF 310
             +Y  +   G  P+  TF
Sbjct: 172 LCLYHRMLWAGVRPDVYTF 190

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 131 SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD 180
            V+++N L+    +    ++   LF+E+ KK  + P+  +Y +L+   C 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGC 303
           ++YN L++ YCK   ++EA ++++ ++E G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.0 bits (95), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYE 296
           GLKPD ++YN L+   C+   +DEA ++ +
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 203 TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV 234
             TY  +L  L K G+ + A  +  EM+  G+
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGL 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.6 bits (94), Expect = 5e-05
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME 230
           KG++   VTY T+++ L + G  +EA  L  EME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 15/175 (8%)

Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
           L+  Y   G    A+  F++M E G     ++F +LL AC+RS +  +    F  + +KY
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619

Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE-- 220
           +++P+   Y  ++     +G   +A   +N+M    +      +  +LN      + E  
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELG 676

Query: 221 --EAERLWSEMEKKGVDLDVAAYNVRITNTYG--GDPERLKELIDEMRDAGLKPD 271
              A+ ++ E++   V      Y + + N Y   G  + +  +   MR+ GL  D
Sbjct: 677 ELAAQHIF-ELDPNSV-----GYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 48/219 (21%), Positives = 102/219 (46%), Gaps = 13/219 (5%)

Query: 85  IESHKNDPKITQEPYLCN-LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT 143
           +ES   +P    + Y+ N ++  + + GM   A R FD+M E    R++ S+  ++    
Sbjct: 149 VESSGFEP----DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLV 200

Query: 144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT 203
            +  Y +   LF E+ +  + +  + ++ ++L++    GS+    +L   +   GV   T
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259

Query: 204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEM 263
                +++   K G+ E+A  ++  M +K     VA  ++       G  E    L  EM
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTT---VAWNSMLAGYALHGYSEEALCLYYEM 316

Query: 264 RDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG 302
           RD+G+  D  +++ ++  + +  +++ AK+ + GL   G
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEME 195
            L PD ++Y  L+   C +G  D+A+ELL+EME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE 332
            G  P+  T+ T I  LC +G  D+A ++  E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC 142
           LI  Y + G  + A++ F++M + G   +V +++ L+   
Sbjct: 9   LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGV 199
           ++Y  L+  +C +G  ++ALEL  EM+ KGV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT 203
           ++Y  L+   C +G  ++ALEL  EM+ +G+E   
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 42/213 (19%)

Query: 103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY 162
           LI  YG  G    A+  F++M   G   + ++F A+L AC  S L ++   +F  + + +
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456

Query: 163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT-YTTVLNCLYKQGNAEE 221
            + P  + Y  +++     G  D+A  ++     K     TV  +  +L       N E 
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK----PTVNMWAALLTACRIHKNLEL 512

Query: 222 AERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC 281
             RL +E                    YG  PE+L                 +Y  L+  
Sbjct: 513 G-RLAAE------------------KLYGMGPEKLN----------------NYVVLLNL 537

Query: 282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI 314
           Y  +    EA KV E L+  G S +     TWI
Sbjct: 538 YNSSGRQAEAAKVVETLKRKGLSMHPAC--TWI 568

Length = 697

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 170 SYGLLLKSHCDSGSSDKALELLNEMENKGVE 200
           +Y  LL +   +G  D AL +L EM+  G++
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASGLK 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
KOG2076	895	consensus RNA polymerase III transcription factor	99.76
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.73
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.73
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.72
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.69
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.65
KOG2003	840	consensus TPR repeat-containing protein [General f	99.65
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.65
KOG1126	638	consensus DNA-binding cell division cycle control	99.64
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG2076	895	consensus RNA polymerase III transcription factor	99.62
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.57
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.56
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.54
PRK12370	553	invasion protein regulator; Provisional	99.53
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.52
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.52
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
PRK12370	553	invasion protein regulator; Provisional	99.51
KOG1129	478	consensus TPR repeat-containing protein [General f	99.47
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.41
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.41
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.39
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.39
PF13041	50	PPR_2: PPR repeat family	99.38
PRK11189	296	lipoprotein NlpI; Provisional	99.38
PF13041	50	PPR_2: PPR repeat family	99.37
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.35
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.35
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.34
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.33
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.33
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.33
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.32
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.29
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.26
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.22
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.21
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.2
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.19
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.19
KOG1125	579	consensus TPR repeat-containing protein [General f	99.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.03
PRK04841	903	transcriptional regulator MalT; Provisional	99.01
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.98
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.98
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.96
KOG1125	579	consensus TPR repeat-containing protein [General f	98.95
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.95
PLN02789	320	farnesyltranstransferase	98.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.93
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.9
PRK15359	144	type III secretion system chaperone protein SscB;	98.89
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.87
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.87
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.87
PRK04841	903	transcriptional regulator MalT; Provisional	98.87
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.83
PLN02789	320	farnesyltranstransferase	98.83
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.83
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.83
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.81
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.79
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.79
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.78
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.77
PF12854	34	PPR_1: PPR repeat	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.74
PF12854	34	PPR_1: PPR repeat	98.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.7
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.67
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.67
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.64
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
PRK15359	144	type III secretion system chaperone protein SscB;	98.59
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.56
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.5
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.48
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.39
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.39
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.36
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.26
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.24
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.24
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.23
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.19
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.19
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.18
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.18
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.17
KOG0553	304	consensus TPR repeat-containing protein [General f	98.17
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.16
PF12688	120	TPR_5: Tetratrico peptide repeat	98.15
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.12
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.11
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.11
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.09
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.06
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.99
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.95
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.93
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.93
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.92
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.91
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.89
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.88
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.84
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.83
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.83
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.79
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.78
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.77
PRK10803	263	tol-pal system protein YbgF; Provisional	97.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.74
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.74
KOG0553	304	consensus TPR repeat-containing protein [General f	97.73
PRK10803	263	tol-pal system protein YbgF; Provisional	97.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.67
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.65
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.64
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.62
PF12688	120	TPR_5: Tetratrico peptide repeat	97.59
KOG1585	308	consensus Protein required for fusion of vesicles	97.58
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.56
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.56
PRK15331	165	chaperone protein SicA; Provisional	97.53
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.52
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.48
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.43
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.31
PF13371	73	TPR_9: Tetratricopeptide repeat	97.3
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.27
PRK15331	165	chaperone protein SicA; Provisional	97.25
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.24
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.22
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.21
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.19
PF13371	73	TPR_9: Tetratricopeptide repeat	97.16
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.16
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.16
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.15
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.15
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.98
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.97
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.96
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.84
PF13428	44	TPR_14: Tetratricopeptide repeat	96.83
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.79
PF13512	142	TPR_18: Tetratricopeptide repeat	96.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.77
PF13512	142	TPR_18: Tetratricopeptide repeat	96.7
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.65
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.56
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.55
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.55
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.41
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.36
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.34
KOG1585	308	consensus Protein required for fusion of vesicles	96.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.29
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.16
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.14
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.12
KOG1258	577	consensus mRNA processing protein [RNA processing	96.06
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.05
KOG4555	175	consensus TPR repeat-containing protein [Function	95.95
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.83
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.77
PF13428	44	TPR_14: Tetratricopeptide repeat	95.68
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.61
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.59
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.58
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.49
PRK11906	458	transcriptional regulator; Provisional	95.48
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.42
KOG4555	175	consensus TPR repeat-containing protein [Function	95.38
PRK11906	458	transcriptional regulator; Provisional	95.15
KOG3941	406	consensus Intermediate in Toll signal transduction	95.13
KOG3941	406	consensus Intermediate in Toll signal transduction	95.13
KOG1258	577	consensus mRNA processing protein [RNA processing	95.07
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.03
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.9
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.89
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.72
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.62
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.54
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.52
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	94.52
PF13431	34	TPR_17: Tetratricopeptide repeat	94.51
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.46
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.41
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.36
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.21
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.14
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.13
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.97
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.63
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.44
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.43
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.24
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.17
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.04
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.84
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.74
PRK11619	644	lytic murein transglycosylase; Provisional	92.68
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	92.61
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.42
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.3
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.14
KOG4234	271	consensus TPR repeat-containing protein [General f	92.14
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.12
PF13929	292	mRNA_stabil: mRNA stabilisation	91.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.77
KOG4570	418	consensus Uncharacterized conserved protein [Funct	91.59
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.56
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.55
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.36
PF13431	34	TPR_17: Tetratricopeptide repeat	91.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.07
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.87
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.66
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.61
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.6
COG3947	361	Response regulator containing CheY-like receiver a	90.32
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.25
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.93
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.71
KOG4234	271	consensus TPR repeat-containing protein [General f	89.71
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.65
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.6
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	89.54
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.18
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.1
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	88.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.42
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.23
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.73
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.41
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.26
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.23
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	87.16
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.11
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	85.61
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	85.6
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.26
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.94
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.89
KOG0687	393	consensus 26S proteasome regulatory complex, subun	84.17
PF13929	292	mRNA_stabil: mRNA stabilisation	84.14
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	83.55
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	82.97
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	82.95
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.61
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	82.6
PRK09687	280	putative lyase; Provisional	82.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.02
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.95
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	81.22
PRK10941	269	hypothetical protein; Provisional	81.06
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.95
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.69
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	80.4
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	80.36
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	80.09

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-56  Score=426.68  Aligned_cols=361  Identities=22%  Similarity=0.302  Sum_probs=346.5

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      |+..+|+.++.+|++.|++++|.++|+.|.+.++.|  +..+|+.++.+|++.|++++|.++|++|...+..|+..+|+.
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p--D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna  512 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA--DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA  512 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            788999999999999999999999999999999655  889999999999999999999999999999899999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh-CCCCCchHHHHHHHHHHHhc
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK-YNLSPDKISYGLLLKSHCDS  181 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  181 (403)
                      +|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .++.||..+|+.++.+|++.
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~  592 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA  592 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999753 47899999999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHH
Q 015673          182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELI  260 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~  260 (403)
                      |++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++ +.|++++|.+++
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673          261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP  340 (403)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (403)
                      ++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.|
T Consensus       673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P  752 (1060)
T PLN03218        673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP  752 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Q 015673          341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVLRAWKKVEEE  386 (403)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~  386 (403)
                      |..+|+.++.+|++.|++++|.+++++|.+. +.|+.. .++.++..
T Consensus       753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~-tynsLIgl  798 (1060)
T PLN03218        753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV-MCRCITGL  798 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence            9999999999999999999999999999874 666644 67777654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-55  Score=420.43  Aligned_cols=373  Identities=17%  Similarity=0.288  Sum_probs=344.6

Q ss_pred             CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCC------------------------------cchhhHHHH
Q 015673           19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV------------------------------SSRYAQDLT   68 (403)
Q Consensus        19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~------------------------------~~~~~~~~l   68 (403)
                      .+..++...+..++..+++.|++++|+++|++|.+.++.+.                              ++..+|+.+
T Consensus       364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L  443 (1060)
T PLN03218        364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML  443 (1060)
T ss_pred             cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence            33445566788888888888888888888888888774321                              466788999


Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                      +.+|++.|+++.|.++|+.|...+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus       444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN--KGVEVTTVTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      ++|.++|+.|.+. |+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|++++|.++|
T Consensus       524 eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        524 AKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999766 9999999999999999999999999999999976  578999999999999999999999999999


Q ss_pred             HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673          227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP  305 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  305 (403)
                      +.|.+.|+.|+..+|+.++.+| +.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCchhHHHHHHHH
Q 015673          306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK-KFPPNVLRAWKKVE  384 (403)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~  384 (403)
                      |..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ +..||.. .|..++
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~-Ty~sLL  761 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-TYSILL  761 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999986 4677765 888899


Q ss_pred             HHhCCCCCC
Q 015673          385 EELGLVPAP  393 (403)
Q Consensus       385 ~~~~~~~~~  393 (403)
                      .+|...++.
T Consensus       762 ~a~~k~G~l  770 (1060)
T PLN03218        762 VASERKDDA  770 (1060)
T ss_pred             HHHHHCCCH
Confidence            988877664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.3e-52  Score=392.72  Aligned_cols=357  Identities=19%  Similarity=0.258  Sum_probs=299.5

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      .|+..+|+.++.++.+.++++.|.+++..|.+.+..|  +..+|+.++..|++.|+++.|.++|++|..    ++..+|+
T Consensus       120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n  193 (697)
T PLN03081        120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP--DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG  193 (697)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence            3556666666666666666666666666666666444  555666666666666666666666666642    4555666


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCC-----------------------------------CCcHHHHHHHHHHHHhcC
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGT-----------------------------------PRSVISFNALLFACTRSR  146 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------------------~~~~~~~~~ll~~~~~~~  146 (403)
                      .++.+|++.|++++|+++|++|.+.|+                                   .||..+|+.|+.+|++.|
T Consensus       194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g  273 (697)
T PLN03081        194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG  273 (697)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence            666666666666666666666655544                                   455556678888899999


Q ss_pred             CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673          147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      ++++|.++|+.|.+     +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus       274 ~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~  348 (697)
T PLN03081        274 DIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH  348 (697)
T ss_pred             CHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence            99999999999854     5889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673          227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP  305 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  305 (403)
                      ..|.+.|+.|+..+++.++..| +.|++++|.++|++|.    .||..+||+||.+|++.|+.++|.++|++|.+.|+.|
T Consensus       349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P  424 (697)
T PLN03081        349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP  424 (697)
T ss_pred             HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999 9999999999999986    4689999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673          306 NATTFRTWIYHLCGSGNFDKAYKVFKESVM-VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE  384 (403)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  384 (403)
                      |..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|.  ..|+.. .|+.|+
T Consensus       425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~-~~~~Ll  501 (697)
T PLN03081        425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVN-MWAALL  501 (697)
T ss_pred             CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHH-HHHHHH
Confidence            999999999999999999999999999986 5899999999999999999999999999998874  566654 899999


Q ss_pred             HHhCCCCCCCCC
Q 015673          385 EELGLVPAPAVG  396 (403)
Q Consensus       385 ~~~~~~~~~~~~  396 (403)
                      .+|..+++.+.|
T Consensus       502 ~a~~~~g~~~~a  513 (697)
T PLN03081        502 TACRIHKNLELG  513 (697)
T ss_pred             HHHHHcCCcHHH
Confidence            999998876544

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-50  Score=391.81  Aligned_cols=366  Identities=17%  Similarity=0.223  Sum_probs=227.9

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      ++..+|+.++.+|.+.|++++|+++|++|...++.|  +..+|+.++.++++.|+++.+.+++..+...+..|+..+|+.
T Consensus       251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P--d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~  328 (857)
T PLN03077        251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP--DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS  328 (857)
T ss_pred             CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence            344555555555555555555555555555555433  444455555555555555555555555544444455555555


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      |+.+|++.|++++|.++|+.|..    ||..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|
T Consensus       329 Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g  403 (857)
T PLN03077        329 LIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLG  403 (857)
T ss_pred             HHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccc
Confidence            55555555555555555555433    44445555555555555555555555555333 45555555555555555555


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK------------------------------  232 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------  232 (403)
                      +++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.                              
T Consensus       404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~  483 (857)
T PLN03077        404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL  483 (857)
T ss_pred             hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555555555544444444444444444444444444444444443221                              


Q ss_pred             CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC------------------------------CCChhcHHHHHHH
Q 015673          233 GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGL------------------------------KPDTISYNFLMTC  281 (403)
Q Consensus       233 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~  281 (403)
                      ++.||..+|+.++.++ ..|+.+.+.+++..+.+.|+                              .||..+||+++.+
T Consensus       484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~  563 (857)
T PLN03077        484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTG  563 (857)
T ss_pred             CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHH
Confidence            1233333333333322 22222222222222222221                              4566778888899


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015673          282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESV-MVHKIPDFNTVKLLVEGLVKKKKIKE  360 (403)
Q Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~  360 (403)
                      |++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++
T Consensus       564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e  643 (857)
T PLN03077        564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE  643 (857)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999 67999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHhCCCCCCCCCCC
Q 015673          361 AKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAPAVGDG  398 (403)
Q Consensus       361 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  398 (403)
                      |.+++++|.  ..|+.. .|.+|+.+|..+++.+.|+.
T Consensus       644 A~~~~~~m~--~~pd~~-~~~aLl~ac~~~~~~e~~e~  678 (857)
T PLN03077        644 AYNFINKMP--ITPDPA-VWGALLNACRIHRHVELGEL  678 (857)
T ss_pred             HHHHHHHCC--CCCCHH-HHHHHHHHHHHcCChHHHHH
Confidence            999999995  677754 99999999999998776543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3e-50  Score=380.25  Aligned_cols=358  Identities=18%  Similarity=0.213  Sum_probs=325.2

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      ...+..+|+.++..+.+.|++++|+++|++|...+. ..++..+|+.++.++.+.++++.+.+++..+...+..|+..++
T Consensus        83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~  161 (697)
T PLN03081         83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM  161 (697)
T ss_pred             CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence            344566899999999999999999999999987652 1247889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-------------
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-------------  167 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------  167 (403)
                      +.++..|++.|+++.|.++|++|.+    ||..+|+.++.+|++.|++++|.++|++|.+. |+.|+             
T Consensus       162 n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~  236 (697)
T PLN03081        162 NRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAG  236 (697)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhc
Confidence            9999999999999999999999976    89999999999999999999999999999765 55555             


Q ss_pred             ----------------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673          168 ----------------------KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       168 ----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                                            ..+|+.++.+|++.|++++|.++|+.|..    +|..+|++++.+|++.|++++|.++
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l  312 (697)
T PLN03081        237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL  312 (697)
T ss_pred             CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence                                  44557778888889999999999998854    5889999999999999999999999


Q ss_pred             HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673          226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS  304 (403)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  304 (403)
                      |++|.+.|+.||..+|+.++.++ ..|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .
T Consensus       313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~  388 (697)
T PLN03081        313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R  388 (697)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence            99999999999999999999999 999999999999999999999999999999999999999999999999987    4


Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCchhHHHHHH
Q 015673          305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK--KFPPNVLRAWKK  382 (403)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~  382 (403)
                      ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+  +..|+.. .|+.
T Consensus       389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-~y~~  467 (697)
T PLN03081        389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-HYAC  467 (697)
T ss_pred             CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-chHh
Confidence            788999999999999999999999999999999999999999999999999999999999999976  4667654 8899


Q ss_pred             HHHHhCCCCCC
Q 015673          383 VEEELGLVPAP  393 (403)
Q Consensus       383 l~~~~~~~~~~  393 (403)
                      |+..++..+..
T Consensus       468 li~~l~r~G~~  478 (697)
T PLN03081        468 MIELLGREGLL  478 (697)
T ss_pred             HHHHHHhcCCH
Confidence            99988887764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4e-49  Score=381.12  Aligned_cols=354  Identities=18%  Similarity=0.164  Sum_probs=229.5

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      |+..+|+.++.+|.+.|++++|+++|++|...++.|  +..+|+.++.+++..+++..+.+++..+...+..++..+++.
T Consensus       150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P--d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~  227 (857)
T PLN03077        150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP--DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA  227 (857)
T ss_pred             CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence            455566666666666666666666666666655444  555556666666666666666666666655555566666666


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      |+.+|++.|+++.|.++|+.|..    ||..+|+.+|.+|++.|++++|+++|.+|.+. |+.||..||+.++.+|++.|
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLG  302 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcC
Confidence            66666666666666666666654    56666666666666666666666666666544 66666666666666666666


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      +.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .||..+|+.++.++ +.|++++|.++|+
T Consensus       303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666664    34566666666666 6666666666666


Q ss_pred             HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673          262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD  341 (403)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (403)
                      +|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.    .+|
T Consensus       379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d  454 (857)
T PLN03077        379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKD  454 (857)
T ss_pred             HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666664    245


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673          342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  392 (403)
                      ..+|+.++.+|++.|+.++|..+|++|.+...||.. ++..++.+|...++
T Consensus       455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~-t~~~lL~a~~~~g~  504 (857)
T PLN03077        455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV-TLIAALSACARIGA  504 (857)
T ss_pred             eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh-HHHHHHHHHhhhch
Confidence            566666666777777777777777777666666654 56666666555444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=3.1e-24  Score=211.99  Aligned_cols=355  Identities=14%  Similarity=0.049  Sum_probs=265.5

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      +.++..+..++..+...|++++|.+.|+++.+..  |. +...+..++..+...|++++|.+.++++.. ..+.+...+.
T Consensus       462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~  537 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PD-FFPAAANLARIDIQEGNPDDAIQRFEKVLT-IDPKNLRAIL  537 (899)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHH
Confidence            3445667777788888888888888888887766  43 344556677777888888888888888764 3445566677


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS  181 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (403)
                      .+...+.+.|++++|...++++.+.+. .+...+..++..+.+.|++++|..+++.+.+  ..+.+...|..+..++...
T Consensus       538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~  614 (899)
T TIGR02917       538 ALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAA  614 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHc
Confidence            788888888888888888888776554 3566777788888888888888888888865  4455677788888888888


Q ss_pred             CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHH
Q 015673          182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELI  260 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~  260 (403)
                      |++++|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...+ ..|++++|..++
T Consensus       615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  692 (899)
T TIGR02917       615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA  692 (899)
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888888887753 3466677788888888888888888888887753 23355555666566 778888888888


Q ss_pred             HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673          261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP  340 (403)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (403)
                      +.+.+.+ +.+...+..+...+...|++++|...|+.+...+  |+..++..+..++.+.|++++|.+.++++.+.. +.
T Consensus       693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~  768 (899)
T TIGR02917       693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN  768 (899)
T ss_pred             HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence            8887764 4456677777888888888888888888888763  455677777888888888888888888888765 66


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCC
Q 015673          341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLV  390 (403)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  390 (403)
                      +...+..+...|...|++++|.+.|+++.+..|++ ...+..+...+...
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~  817 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLEL  817 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhc
Confidence            77888888888888888888888888888755544 44666665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=5.1e-24  Score=210.43  Aligned_cols=352  Identities=11%  Similarity=0.045  Sum_probs=219.9

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..+...+...|++++|+..|+++...+  |. +...+..++..+...|++++|..+++.+.. ..+.+...|..++.
T Consensus       534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~  609 (899)
T TIGR02917       534 RAILALAGLYLRTGNEEEAVAWLEKAAELN--PQ-EIEPALALAQYYLGKGQLKKALAILNEAAD-AAPDSPEAWLMLGR  609 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHH
Confidence            344444445555555555555555554444  22 223344455555555666666666655542 23344455556666


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                      ++...|++++|+..|+.+.+... .+...+..+..++.+.|++++|..+|+++.+  ..+.+..++..++..+...|+++
T Consensus       610 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~  686 (899)
T TIGR02917       610 AQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTE  686 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHH
Confidence            66666666666666666655432 2455555666666666666666666666654  22334556666666666666666


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR  264 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~  264 (403)
                      +|.++++.+.+.+ +.+...+..+..++...|++++|...|+.+...+  |+...+..+...+ ..|++++|.+.++.+.
T Consensus       687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  763 (899)
T TIGR02917       687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWL  763 (899)
T ss_pred             HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6666666666553 3455666666677777777777777777776653  3334444444455 6777777777777776


Q ss_pred             HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 015673          265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT  344 (403)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  344 (403)
                      +.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|+ .+|+..++++.+.. +.++.+
T Consensus       764 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~  839 (899)
T TIGR02917       764 KTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAI  839 (899)
T ss_pred             HhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHH
Confidence            653 3456677777777777788888888888777664 4566777777777777777 77888887777654 445666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673          345 VKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  392 (403)
                      +..+..++...|++++|.+.++++.+..+. ....+..+...+...++
T Consensus       840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~  886 (899)
T TIGR02917       840 LDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR  886 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence            777778888888888888888888875444 34466666666555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=2.4e-23  Score=185.33  Aligned_cols=297  Identities=15%  Similarity=0.103  Sum_probs=141.3

Q ss_pred             hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC---HHHHHHHHHHHhcc
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ---EPYLCNLIRSYGQA  110 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  110 (403)
                      .+...|++++|+..|+++.+.+  |. +..++..++..+...|++++|..+++.+...+..+.   ...+..++..|.+.
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD--PE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC--cc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            3445566666666666666555  32 334455555566666666666666665553221111   12344555556666


Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc---hHHHHHHHHHHHhcCChHHH
Q 015673          111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD---KISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a  187 (403)
                      |++++|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.....+.   ...+..+...+.+.|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            666666666666655322 24455555556666666666666666655443111111   11233444455555555555


Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673          188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~  266 (403)
                      .+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+.......++.+...+ ..|++++|...++.+.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555555432 2233444455555555555555555555555432111122333333333 444444444444444433


Q ss_pred             CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHhCCCC
Q 015673          267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG---SGNFDKAYKVFKESVMVHKI  339 (403)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~  339 (403)
                        .|+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.++++.+++++.+.++.
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  350 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK  350 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence              233333344444444444444444444444433  3444444444433332   23444444444444444333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=1.5e-21  Score=182.21  Aligned_cols=340  Identities=10%  Similarity=-0.037  Sum_probs=270.5

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      .+......++..+.+.|++++|+.+++......  |.+ ...+..++.+....|++++|...++++.. ..|.+...+..
T Consensus        40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P~~~~a~~~  115 (656)
T PRK15174         40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNG-RDLLRRWVISPLASSQPDAVLQVVNKLLA-VNVCQPEDVLL  115 (656)
T ss_pred             ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCCCChHHHHH
Confidence            344556777888999999999999999999988  554 34455667778889999999999999984 45566777888


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      +...+...|++++|+..|+++.+..+ .+...+..+...+...|++++|...++.+...  .+.+...+..+ ..+...|
T Consensus       116 la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g  191 (656)
T PRK15174        116 VASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKS  191 (656)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcC
Confidence            99999999999999999999988653 36778889999999999999999999988653  22233333333 3478899


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHH----HH
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPER----LK  257 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~----a~  257 (403)
                      ++++|...++.+.+....++...+..+..++...|++++|...+++....... +...+..+-..+ ..|++++    |.
T Consensus       192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~  270 (656)
T PRK15174        192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAA  270 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Confidence            99999999999877643344455566678899999999999999999987432 344444444445 8888885    89


Q ss_pred             HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      ..++...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..++++...+
T Consensus       271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998864 3356788899999999999999999999999874 4456677888899999999999999999998765


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                       +.+...+..+..++...|++++|...|++..+..|.
T Consensus       349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence             333344555677899999999999999999875443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=9.3e-22  Score=175.16  Aligned_cols=297  Identities=14%  Similarity=0.099  Sum_probs=243.1

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHH
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS---VISFNALLFACT  143 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~  143 (403)
                      .....+...|++++|...|+++... .+.+...+..+...+...|++++|..+++.+...+..++   ...+..+...|.
T Consensus        40 ~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         40 FKGLNFLLNEQPDKAIDLFIEMLKV-DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            3455677889999999999999853 455667788899999999999999999999987543222   256788899999


Q ss_pred             hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hhhHHHHHHHHHhcCCH
Q 015673          144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT----TVTYTTVLNCLYKQGNA  219 (403)
Q Consensus       144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~  219 (403)
                      +.|++++|..+|+++.+  ..+++..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+...|++
T Consensus       119 ~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  196 (389)
T PRK11788        119 KAGLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL  196 (389)
T ss_pred             HCCCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence            99999999999999976  3445678899999999999999999999999988643322    22456677888999999


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          220 EEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL  298 (403)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  298 (403)
                      ++|...|+++.+... .+...+..+...+ ..|++++|.++++++.+.+......+++.++.+|...|++++|...++.+
T Consensus       197 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        197 DAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999988642 2344555555556 89999999999999987642222456788999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHh
Q 015673          299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK---KKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~  371 (403)
                      .+.  .|+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..+++++.++
T Consensus       276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            887  467677788999999999999999999998875  4888888888887775   56899999999999863

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=3.5e-19  Score=166.46  Aligned_cols=331  Identities=11%  Similarity=0.008  Sum_probs=259.3

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      +.++.+++.---.|....+..-...........++..+.+.|++++|..+++.... ..+.+...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~-~~p~~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL-TAKNGRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH-hCCCchhHHHHHhhhHhhcCCHH
Confidence            34555666555555544433211122333345667788899999999999999985 44455566667778888899999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      +|+..|+++....+. +...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|...++.+
T Consensus        94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174         94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            999999999987653 6778888999999999999999999999852  3445678888999999999999999999988


Q ss_pred             HhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChh
Q 015673          195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTI  273 (403)
Q Consensus       195 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~  273 (403)
                      ..... .+...+..+ ..+...|++++|...++.+.+....++......+...+ ..|++++|...++.+.+.. +.+..
T Consensus       171 ~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~  247 (656)
T PRK15174        171 AQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA  247 (656)
T ss_pred             HHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence            76533 233344333 34788999999999999988764334444444444555 8999999999999999874 33567


Q ss_pred             cHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDE----AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV  349 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (403)
                      .+..+...+...|++++    |...|++..+.. +.+...+..+...+...|++++|+..+++..... +.+...+..+.
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La  325 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            78889999999999986    899999999874 4467789999999999999999999999999876 55677888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      .++.+.|++++|...++++.+..|.
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999875443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-20  Score=161.26  Aligned_cols=350  Identities=16%  Similarity=0.115  Sum_probs=240.0

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH----
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY----   99 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----   99 (403)
                      -..+|..+.+.+...|++++|+.+++.+++..  |. ...+|..+..++...|+.+.|.+.|....+- .|.....    
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~-fida~inla~al~~~~~~~~a~~~~~~alql-nP~l~ca~s~l  190 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PK-FIDAYINLAAALVTQGDLELAVQCFFEALQL-NPDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--ch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-Ccchhhhhcch
Confidence            34678889999999999999999999999988  43 6677778888888888888888888777642 2211122    


Q ss_pred             ------------------------------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC
Q 015673          100 ------------------------------LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD  149 (403)
Q Consensus       100 ------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  149 (403)
                                                    |..|.-.+-..|+...|++.|++..+.++. -..+|..|...|...+.++
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence                                          333333344445555555555555543321 2445555555555556666


Q ss_pred             cHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          150 KVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       150 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      +|...|.+...   ..|+ ...+..+...|...|+++.|+..+++..+. .+.-...|+.|..++-..|++.+|.+.+.+
T Consensus       270 ~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  270 RAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNK  345 (966)
T ss_pred             HHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence            66665555542   2232 344555555566667777777777776664 222356777888888888888888888877


Q ss_pred             HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673          229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN  306 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  306 (403)
                      .+..... .....+.+-..+ ..|.++.|..+|....+-  .|. ...++.|...|-+.|++++|+..|++.+..  .|+
T Consensus       346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~  420 (966)
T KOG4626|consen  346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT  420 (966)
T ss_pred             HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence            7775322 233444444555 777888888888777664  333 346778888888888888888888888865  555


Q ss_pred             -HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          307 -ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       307 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                       ...|+.+...|-..|+.+.|+..+.+.+..+ +.-.+.++.|...|-.+|+..+|+.-++...+ ..||...++..++.
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-lkPDfpdA~cNllh  498 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-LKPDFPDAYCNLLH  498 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc-cCCCCchhhhHHHH
Confidence             4578888888888999999999998888655 33357788889999999999999999999887 77776667766665


Q ss_pred             HhCC
Q 015673          386 ELGL  389 (403)
Q Consensus       386 ~~~~  389 (403)
                      +..+
T Consensus       499 ~lq~  502 (966)
T KOG4626|consen  499 CLQI  502 (966)
T ss_pred             HHHH
Confidence            5544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=9.8e-19  Score=163.87  Aligned_cols=354  Identities=14%  Similarity=0.080  Sum_probs=222.1

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      +......+.+.|++++|+..|++++...  |  +...|..+..+|...|++++|++.++.... ..+.....+..+..+|
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p--~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l~p~~~~a~~~~a~a~  204 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--P--DPVYYSNRAACHNALGDWEKVVEDTTAALE-LDPDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--chHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence            4456788899999999999999999877  5  345678889999999999999999999885 4556677788899999


Q ss_pred             hccCCHHHHHHHHHHHHhCCCC-----------------------------CcHHHHHHHHH------------------
Q 015673          108 GQAGMFDHAMRTFDQMDELGTP-----------------------------RSVISFNALLF------------------  140 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~-----------------------------~~~~~~~~ll~------------------  140 (403)
                      ...|++++|+..|..+...+..                             ++...+..+..                  
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            9999999998766544321100                             00000000000                  


Q ss_pred             ------------HH------HhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 015673          141 ------------AC------TRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEV  201 (403)
Q Consensus       141 ------------~~------~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  201 (403)
                                  ..      ...+++++|...|+...+.....| +...++.+...+...|++++|+..|++..+.. +.
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence                        00      012356667777777665322223 34556667777777777777777777776642 22


Q ss_pred             chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHH
Q 015673          202 TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMT  280 (403)
Q Consensus       202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  280 (403)
                      +...|..+..++...|++++|...|+++.+... .+...+..+-..+ ..|++++|...|++..+.. +.+...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence            345666777777777777777777777766532 2233444444444 6777777777777777653 224555666667


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH---H---HHHHHHHHHHh
Q 015673          281 CYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF---N---TVKLLVEGLVK  354 (403)
Q Consensus       281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~---~~~~l~~~~~~  354 (403)
                      ++.+.|++++|+..|+...+.. +.+...+..+...+...|++++|++.|++.+......+.   .   .+......+..
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            7777777777777777766542 334566667777777777777777777776654311111   0   11111222333


Q ss_pred             cCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          355 KKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      .|++++|.+++++..+. .|+....|..+...+...+
T Consensus       521 ~~~~~eA~~~~~kAl~l-~p~~~~a~~~la~~~~~~g  556 (615)
T TIGR00990       521 KQDFIEAENLCEKALII-DPECDIAVATMAQLLLQQG  556 (615)
T ss_pred             hhhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcc
Confidence            57777777777776653 3444445555555444333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=7.1e-19  Score=164.83  Aligned_cols=338  Identities=11%  Similarity=0.032  Sum_probs=257.0

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC-------
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ-------   96 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------   96 (403)
                      ++..|..+...+...|++++|++.++.+++.+  |. ...++..+..++...|++++|...|..+.......+       
T Consensus       159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~  235 (615)
T TIGR00990       159 DPVYYSNRAACHNALGDWEKVVEDTTAALELD--PD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV  235 (615)
T ss_pred             chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            45678888999999999999999999999988  54 556778899999999999999876654321111000       


Q ss_pred             -------------------------HHHHHHH---------------------------HHHH------hccCCHHHHHH
Q 015673           97 -------------------------EPYLCNL---------------------------IRSY------GQAGMFDHAMR  118 (403)
Q Consensus        97 -------------------------~~~~~~l---------------------------~~~~------~~~~~~~~A~~  118 (403)
                                               ......+                           +...      ...+++++|++
T Consensus       236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~  315 (615)
T TIGR00990       236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR  315 (615)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence                                     0000000                           0000      12357899999


Q ss_pred             HHHHHHhCC-C-CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673          119 TFDQMDELG-T-PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       119 ~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      .|+...+.+ . +.....++.+...+...|++++|+..|++..+.  .+.+...|..+...+...|++++|...|+++.+
T Consensus       316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  393 (615)
T TIGR00990       316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK  393 (615)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999998764 1 224567888888899999999999999999753  233466888999999999999999999999988


Q ss_pred             CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhc
Q 015673          197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTIS  274 (403)
Q Consensus       197 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~  274 (403)
                      .. +.+...|..+..++...|++++|...|++..+..  |+ ...+..+...+ ..|++++|...|+...+.. +.+...
T Consensus       394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~  469 (615)
T TIGR00990       394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDV  469 (615)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHH
Confidence            63 4467889999999999999999999999999874  44 33344444444 8999999999999998763 335778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT------TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLL  348 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  348 (403)
                      ++.+...+...|++++|...|+...+.....+..      .++..+..+...|++++|.+++++.+..+ +.+...+..+
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l  548 (615)
T TIGR00990       470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM  548 (615)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence            8999999999999999999999988763211111      12222233444799999999999988765 4556678899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh
Q 015673          349 VEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      ...+.+.|++++|.+.|++..+.
T Consensus       549 a~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       549 AQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.88  E-value=1.1e-18  Score=173.98  Aligned_cols=333  Identities=10%  Similarity=-0.001  Sum_probs=243.3

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC-CHHHH----------
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT-QEPYL----------  100 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----------  100 (403)
                      ...+...|++++|+..|+++++.+  |. +..++..+...+.+.|++++|+..|++........ ....+          
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~--P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN--PK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            556677899999999999999987  54 56677888999999999999999999987533222 11111          


Q ss_pred             --HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH-----
Q 015673          101 --CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL-----  173 (403)
Q Consensus       101 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----  173 (403)
                        ......+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++.+.  .+.+...+..     
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence              22345677889999999999999887543 6677888888999999999999999998753  1222222222     


Q ss_pred             -------------------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc
Q 015673          174 -------------------------------------LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ  216 (403)
Q Consensus       174 -------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  216 (403)
                                                           +...+...|++++|.+.|++..+.. +-+...+..+..+|.+.
T Consensus       430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~  508 (1157)
T PRK11447        430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA  508 (1157)
T ss_pred             HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence                                                 2334556789999999999988863 33667788889999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHC------------------------------
Q 015673          217 GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA------------------------------  266 (403)
Q Consensus       217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~------------------------------  266 (403)
                      |++++|...++++.+.........+...+.....++.++|...++.+...                              
T Consensus       509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            99999999999988753222222222211111445555554444332110                              


Q ss_pred             ---------CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          267 ---------GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       267 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                               ..+.+...+..+...+.+.|++++|+..|+.+.+.. +.+...+..++..+...|++++|++.++.+.+..
T Consensus       589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~  667 (1157)
T PRK11447        589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA  667 (1157)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence                     013345566778888899999999999999998874 5567888899999999999999999999887654


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                       +.+..++..+..++...|++++|.++++++.+..+
T Consensus       668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~  702 (1157)
T PRK11447        668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK  702 (1157)
T ss_pred             -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence             45567777788899999999999999999987543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=7.7e-18  Score=160.79  Aligned_cols=346  Identities=11%  Similarity=0.040  Sum_probs=248.7

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      +.+...+..+...+...|++++|+++|+.+++..  |. +...+..++..+...|++++|...++++... .+.+.. +.
T Consensus        46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~  120 (765)
T PRK10049         46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LL  120 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HH
Confidence            3444567888889999999999999999998887  54 3455667888889999999999999998753 555556 87


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH-------------------------
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD-------------------------  156 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-------------------------  156 (403)
                      .+..++...|++++|+..++++.+..+. +...+..+..++...+..+.|+..++                         
T Consensus       121 ~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~  199 (765)
T PRK10049        121 ALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSF  199 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8888999999999999999999886643 55555666666666666555544444                         


Q ss_pred             ---------------------HchhhCCCCCchH-HHH----HHHHHHHhcCChHHHHHHHHHHHhCCCC-CchhhHHHH
Q 015673          157 ---------------------EIPKKYNLSPDKI-SYG----LLLKSHCDSGSSDKALELLNEMENKGVE-VTTVTYTTV  209 (403)
Q Consensus       157 ---------------------~~~~~~~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l  209 (403)
                                           .+.+.....|+.. .+.    ..+..+...|++++|+..|+.+.+.+.+ |+. ....+
T Consensus       200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l  278 (765)
T PRK10049        200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV  278 (765)
T ss_pred             ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence                                 3332211122211 111    1123445678899999999998877532 222 22235


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCC---chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-----------CCC---
Q 015673          210 LNCLYKQGNAEEAERLWSEMEKKGVDL---DVAAYNVRITNT-YGGDPERLKELIDEMRDAGL-----------KPD---  271 (403)
Q Consensus       210 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-----------~~~---  271 (403)
                      ..+|...|++++|+..|+++.+.....   .......+..++ ..|++++|..+++.+.....           .|+   
T Consensus       279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~  358 (765)
T PRK10049        279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW  358 (765)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence            678889999999999999887653211   122333444445 88999999999998886521           112   


Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++|++.+++++... |.+...+......
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~  436 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWT  436 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHH
Confidence            1234556778888999999999999988764 5567788888889999999999999999988765 5557777778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCchh
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFPPNV  376 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~~~  376 (403)
                      +...|++++|..+++++.+..|.+.
T Consensus       437 al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        437 ALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999998666553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.86  E-value=7.7e-18  Score=167.99  Aligned_cols=340  Identities=11%  Similarity=-0.011  Sum_probs=248.2

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcch-hhH------------HHHHHHHHhcCCcchHHHHHHHh
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR-YAQ------------DLTVRRLAKSKRFSDIETLIESH   88 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~   88 (403)
                      |.+...+..+...+.+.|++++|+..|+++.+..  |.... ..+            ......+.+.|++++|...|+++
T Consensus       300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3456678888999999999999999999999877  43221 111            12355677899999999999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH------------------------------
Q 015673           89 KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL------------------------------  138 (403)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------------------------  138 (403)
                      ... .+.+...+..+..++...|++++|++.|+++.+.... +...+..+                              
T Consensus       378 l~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~  455 (1157)
T PRK11447        378 RQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI  455 (1157)
T ss_pred             HHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence            853 4556667778999999999999999999999875432 33333222                              


Q ss_pred             ------------HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH
Q 015673          139 ------------LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY  206 (403)
Q Consensus       139 ------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  206 (403)
                                  ...+...|++++|+..|++..+.  .+-+...+..+...|.+.|++++|...++++.+.. +.+...+
T Consensus       456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~  532 (1157)
T PRK11447        456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV  532 (1157)
T ss_pred             HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence                        23345678889999999998763  33456778889999999999999999999988752 2234433


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCchHHHHHHHhh
Q 015673          207 TTVLNCLYKQGNAEEAERLWSEMEKK---------------------------------------GVDLDVAAYNVRITN  247 (403)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~  247 (403)
                      ..+...+...++.++|+..++.+...                                       ..+.+...+..+...
T Consensus       533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~  612 (1157)
T PRK11447        533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADW  612 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHH
Confidence            33333444455555555444432110                                       012233333344444


Q ss_pred             h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 015673          248 T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA  326 (403)
Q Consensus       248 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  326 (403)
                      + ..|++++|+..|+...+.. +.+...+..++..|...|++++|.+.++.+.+.. +.+...+..+..++...|++++|
T Consensus       613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA  690 (1157)
T PRK11447        613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAA  690 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHH
Confidence            4 8899999999999999874 3467788999999999999999999999888753 34556677788889999999999


Q ss_pred             HHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          327 YKVFKESVMVHKI--P---DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       327 ~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+++++++.....  |   +...+..+...+...|++++|...+++...
T Consensus       691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999875422  2   224666678899999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=3.6e-17  Score=156.21  Aligned_cols=349  Identities=12%  Similarity=0.028  Sum_probs=252.7

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      .+.++.-....+..+...|+.++|+++|+......  |. ....+..+...+...|++++|..+|++... ..|.+...+
T Consensus        11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~   86 (765)
T PRK10049         11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QL-PARGYAAVAVAYRNLKQWQNSLTLWQKALS-LEPQNDDYQ   86 (765)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence            34455567777888899999999999999998755  32 455578889999999999999999999874 455666777


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..++.++...|++++|+..++++.+..+. +.. +..+..++...|+.++|+..++++.+.  .+.+...+..+..++..
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~  162 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            88999999999999999999999886543 556 888889999999999999999999863  33345555556666666


Q ss_pred             cCChHHHHHHHH----------------------------------------------HHHhC-CCCCchh-hHH----H
Q 015673          181 SGSSDKALELLN----------------------------------------------EMENK-GVEVTTV-TYT----T  208 (403)
Q Consensus       181 ~~~~~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~  208 (403)
                      .+..+.|++.++                                              .+.+. ...|+.. .+.    .
T Consensus       163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d  242 (765)
T PRK10049        163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID  242 (765)
T ss_pred             CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence            666555444443                                              33322 1112211 111    1


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCC---ChhcHHHHHHHHH
Q 015673          209 VLNCLYKQGNAEEAERLWSEMEKKGVD-LDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKP---DTISYNFLMTCYC  283 (403)
Q Consensus       209 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~  283 (403)
                      .+.++...|++++|+..|+.+.+.+.. |+..... +...+ ..|++++|+..|+.+.+.....   .......+..++.
T Consensus       243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~  321 (765)
T PRK10049        243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL  321 (765)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence            133456778999999999998887532 3322222 23344 8899999999999987653111   1234555666788


Q ss_pred             hcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673          284 KNEMMDEAKKVYEGLEENGC-----------SPN---ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV  349 (403)
Q Consensus       284 ~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (403)
                      +.|++++|..+++.+.....           .|+   ...+..+...+...|+.++|+++++++.... +.+...+..+.
T Consensus       322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA  400 (765)
T PRK10049        322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA  400 (765)
T ss_pred             hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            99999999999998886521           123   2245566778888999999999999988765 66788888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCchhHHHH
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAW  380 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  380 (403)
                      ..+...|++++|++.+++..+.. |+....+
T Consensus       401 ~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~  430 (765)
T PRK10049        401 SVLQARGWPRAAENELKKAEVLE-PRNINLE  430 (765)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhC-CCChHHH
Confidence            99999999999999999998854 4543333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=3.6e-18  Score=147.40  Aligned_cols=346  Identities=12%  Similarity=0.017  Sum_probs=192.0

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCC-------------------------------CcchhhHHHHHHHHHh
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASP-------------------------------VSSRYAQDLTVRRLAK   74 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p-------------------------------~~~~~~~~~l~~~~~~   74 (403)
                      .....+...+.+.|++.+|.+.-...-..+..-                               +.-..+|..+...+..
T Consensus        49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE  128 (966)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence            345667777788889999888766555444110                               1123345556666666


Q ss_pred             cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHH-HHHHHHHHhcCCcCcHHH
Q 015673           75 SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISF-NALLFACTRSRLYDKVPI  153 (403)
Q Consensus        75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~  153 (403)
                      .|++++|+.+++.+.. ..+...+.|..+..++...|+.+.|.+.|....+.+  |+.... ..+....-..|++++|..
T Consensus       129 rg~~~~al~~y~~aie-l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIE-LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             hchHHHHHHHHHHHHh-cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence            6777777777776663 344455566667777777777777777766666533  433322 222233333555666665


Q ss_pred             HHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      .|.+.++.  .+-=...|+.|...+-..|+...|++.|++..+.. +.-...|..|...|...+.++.|...+.+.... 
T Consensus       206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-  281 (966)
T KOG4626|consen  206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-  281 (966)
T ss_pred             HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence            55555432  11123445566666666677777777777776642 112455666666666666666666666666554 


Q ss_pred             CCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015673          234 VDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF  310 (403)
Q Consensus       234 ~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (403)
                       .|+ ...+..+...| .+|+.+.|++.+++..+.  .|+ ...|+.|..++-..|++.+|.+.|.+..... +......
T Consensus       282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam  357 (966)
T KOG4626|consen  282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM  357 (966)
T ss_pred             -CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence             222 22333333333 666666666666666654  333 3456666666666666666666666655442 2223345


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE  384 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  384 (403)
                      +.|...+...|.+++|..+|....+.. +.-...++.|...|-++|+.++|+..+++..+ +.|....++..+.
T Consensus       358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P~fAda~~NmG  429 (966)
T KOG4626|consen  358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKPTFADALSNMG  429 (966)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCchHHHHHHhcc
Confidence            555555555555555555555555432 22234445555555555555555555555544 4444444444433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=6.1e-16  Score=145.45  Aligned_cols=339  Identities=16%  Similarity=0.136  Sum_probs=213.5

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      .+.+....+-...+.|+++.|++.|+++.+..  |......+ .++..+...|+.++|+..+++.. ...+........+
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llal  108 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASA  108 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHH
Confidence            34455566677789999999999999999988  65333343 77778888899999999999988 3334444444455


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      +..+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++..   ..|+...+..++..+...++
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~  184 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcch
Confidence            77888999999999999999997765 577777888889999999999999999974   34565555444444444566


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHH----------------------------------------
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE----------------------------------------  223 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------------------------------------  223 (403)
                      ..+|++.++++.+.. +.+...+..+..++.+.|-...|.                                        
T Consensus       185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r  263 (822)
T PRK14574        185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER  263 (822)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            666999999888763 334444444444444443222222                                        


Q ss_pred             --------HHHHHHHHc-CCCCch-HHH-HH---HHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673          224 --------RLWSEMEKK-GVDLDV-AAY-NV---RITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM  288 (403)
Q Consensus       224 --------~~~~~~~~~-~~~~~~-~~~-~~---ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  288 (403)
                              .-++.+... +..|.. ..| ..   .+.++ ..+++.++++.|+.+...+.+.-..+-..+..+|...++.
T Consensus       264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P  343 (822)
T PRK14574        264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP  343 (822)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence                    222222221 111211 111 11   11222 5667777777777777665443334555666677777777


Q ss_pred             HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----------C--CCH-HHHHHHH
Q 015673          289 DEAKKVYEGLEENG-----CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-----------I--PDF-NTVKLLV  349 (403)
Q Consensus       289 ~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~--~~~-~~~~~l~  349 (403)
                      ++|..+|+.+....     ..++......|.-++...+++++|..+++++.+...           .  ||. ..+..++
T Consensus       344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a  423 (822)
T PRK14574        344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV  423 (822)
T ss_pred             HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence            77777777665432     122333345666666777777777777776665210           1  222 2233345


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      ..+...|+..+|++.++++.+.
T Consensus       424 ~~~~~~gdl~~Ae~~le~l~~~  445 (822)
T PRK14574        424 QSLVALNDLPTAQKKLEDLSST  445 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            5666677777777777776553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.79  E-value=6.5e-15  Score=138.65  Aligned_cols=337  Identities=12%  Similarity=0.041  Sum_probs=233.9

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (403)
                      ...+...|++++|+++|+++.+..  |.. ...+..++..+...++.++|++.++++...  .|....+..++..+...+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~d--P~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~  183 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKD--PTN-PDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence            556667788888888888888877  543 455556677777888888888888887643  222333444444444456


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH-----------------------------------
Q 015673          112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD-----------------------------------  156 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-----------------------------------  156 (403)
                      +..+|++.++++.+..+. +...+..+..++.+.|-...|.++..                                   
T Consensus       184 ~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~  262 (822)
T PRK14574        184 RNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE  262 (822)
T ss_pred             hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence            665688888888776532 55555666666655554444433332                                   


Q ss_pred             -------------HchhhCCCCCch-HH----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 015673          157 -------------EIPKKYNLSPDK-IS----YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN  218 (403)
Q Consensus       157 -------------~~~~~~~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  218 (403)
                                   .+....+..|.. ..    ..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...++
T Consensus       263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~  342 (822)
T PRK14574        263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL  342 (822)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence                         222211111221 11    112345667788899999999999888766566788889999999999


Q ss_pred             HHHHHHHHHHHHHcCC-----CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-----------CCCh---hcHHHH
Q 015673          219 AEEAERLWSEMEKKGV-----DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGL-----------KPDT---ISYNFL  278 (403)
Q Consensus       219 ~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l  278 (403)
                      +++|..++..+.....     .++......+..++ ..+++++|..+++.+.+.-.           .||.   ..+..+
T Consensus       343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~  422 (822)
T PRK14574        343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL  422 (822)
T ss_pred             cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence            9999999999876531     22233345566666 88999999999999987311           1111   123445


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI  358 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  358 (403)
                      +..+...|+..+|++.++++.... +-|......+...+...|.+.+|...++...... +.+..+......++...|++
T Consensus       423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~  500 (822)
T PRK14574        423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEW  500 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhH
Confidence            677888999999999999998765 6688888889999999999999999997766553 55677777888889999999


Q ss_pred             HHHHHHHHHHHHhCCchh
Q 015673          359 KEAKGVIRTIKKKFPPNV  376 (403)
Q Consensus       359 ~~a~~~~~~~~~~~~~~~  376 (403)
                      ++|..+.+.+.+..|.+.
T Consensus       501 ~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        501 HQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHHHHHHHHhhCCCch
Confidence            999999999888766553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=2.7e-14  Score=137.30  Aligned_cols=324  Identities=13%  Similarity=0.092  Sum_probs=241.5

Q ss_pred             hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC-C-CCCCHHHHHHHHHHHhccC
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-P-KITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~  111 (403)
                      .+...+...++...++.+.+..  |. +......+.-...+.|+.++|.++|+..... + ...+......++..|.+.+
T Consensus       351 ~~~~~~~~~~~~~~~~~~y~~~--~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  427 (987)
T PRK09782        351 VSVATRNKAEALRLARLLYQQE--PA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP  427 (987)
T ss_pred             hccccCchhHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence            3334577777777777787765  32 3444556666778899999999999998642 1 2223444557888887776


Q ss_pred             C---HHHHHHH----------------------HHHHHhC-CC-CC--cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC
Q 015673          112 M---FDHAMRT----------------------FDQMDEL-GT-PR--SVISFNALLFACTRSRLYDKVPILFDEIPKKY  162 (403)
Q Consensus       112 ~---~~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  162 (403)
                      .   ...+..+                      ++..... +. ++  +...|..+..++.. ++.++|...+.+.... 
T Consensus       428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-  505 (987)
T PRK09782        428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-  505 (987)
T ss_pred             cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence            6   3333222                      1111111 11 23  56778888877776 7888899988887653 


Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HH
Q 015673          163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA-AY  241 (403)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~  241 (403)
                        .|+......+...+...|++++|...|+++...  +|+...+..+..++.+.|++++|...++...+..  |+.. .+
T Consensus       506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~  579 (987)
T PRK09782        506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALY  579 (987)
T ss_pred             --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHH
Confidence              356555445556667899999999999998664  3455566777888999999999999999998864  3332 22


Q ss_pred             HHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015673          242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS  320 (403)
Q Consensus       242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  320 (403)
                      ..+.... ..|++++|...+++..+.  .|+...+..+..++.+.|+.++|...+++..... +.+...+..+..++...
T Consensus       580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDS  656 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            2222223 669999999999999886  5678889999999999999999999999999875 55677888888899999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          321 GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      |++++|+..+++.++.. +.++..+..+..++...|++++|+..+++..+..
T Consensus       657 G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        657 GDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            99999999999999876 6678899999999999999999999999998743

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.76  E-value=9e-15  Score=131.87  Aligned_cols=334  Identities=11%  Similarity=0.039  Sum_probs=262.6

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      .....+.+.-.|+.++|.+++.++++..  |. ...+|..+...|-..|+.+++...+-.+. +..+.+...|..+....
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~-~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQD--PR-NPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC--cc-chhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHH
Confidence            3344556666799999999999999999  54 56778999999999999999998776665 56677778999999999


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hH----HHHHHHHHHHhcC
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KI----SYGLLLKSHCDSG  182 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~~  182 (403)
                      .+.|++++|.-+|.++++..+. +....---+..|-+.|+...|...|.++...  .+|. ..    .--.+++.+...+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999997653 5555666677899999999999999999864  2222 22    2234567777888


Q ss_pred             ChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------------
Q 015673          183 SSDKALELLNEMENK-GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD--------------------------  235 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------  235 (403)
                      +-+.|.+.++..... +-..+...++.++..+.+...++.+......+......                          
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence            889999999887663 23346677889999999999999999888777662222                          


Q ss_pred             -CchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCC--CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015673          236 -LDVAAYNVRITNTYGGDPERLKELIDEMRDAGLK--PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT  312 (403)
Q Consensus       236 -~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  312 (403)
                       ++...+...+........+....+...+.+..+.  -+...|.-+..+|.+.|.+.+|+.+|..+......-+...|-.
T Consensus       375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence             2222233344333556666666666666666533  3456788899999999999999999999998755566779999


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +..+|...|..++|++.|++.+... +.+...-..|...+.+.|+.++|.+.++.+.
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999999999999765 5566777788999999999999999999874

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=3.1e-14  Score=136.81  Aligned_cols=339  Identities=9%  Similarity=0.003  Sum_probs=248.0

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcch---HHH-----------------
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSD---IET-----------------   83 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~---a~~-----------------   83 (403)
                      +......+.-.+.+.|+.++|..+|+........-..+.....-++..|.+.+....   +..                 
T Consensus       375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  454 (987)
T PRK09782        375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL  454 (987)
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence            344455556667789999999999999987431111122333466777776655222   211                 


Q ss_pred             -----HHHHhhc--CCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673           84 -----LIESHKN--DPKIT--QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL  154 (403)
Q Consensus        84 -----~~~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  154 (403)
                           .++....  ...++  +...|..+..++.. +++++|+..|.+.....  |+......+...+...|++++|...
T Consensus       455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~  531 (987)
T PRK09782        455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA  531 (987)
T ss_pred             hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence                 1222211  12234  56677888888876 89999999888887644  5655544555566789999999999


Q ss_pred             HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673          155 FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV  234 (403)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  234 (403)
                      |+++..   .+|+...+..+...+.+.|++++|..+++...+.+ +.+...+..+...+...|++++|...+++..+.  
T Consensus       532 ~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--  605 (987)
T PRK09782        532 WQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--  605 (987)
T ss_pred             HHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence            999853   35555667778888999999999999999998864 233333444444555669999999999999987  


Q ss_pred             CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673          235 DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW  313 (403)
Q Consensus       235 ~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  313 (403)
                      .|+...+..+-..+ ..|++++|+..+++..+.. +.+...++.+..++...|++++|+..++...+.. +-+...+..+
T Consensus       606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nL  683 (987)
T PRK09782        606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQL  683 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            45666666666666 9999999999999999874 3356778888889999999999999999999874 4567789999


Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..++...|++++|+..+++.++.. +.+..+.........+..+++.|.+-+++... +.|+
T Consensus       684 A~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~-~~~~  743 (987)
T PRK09782        684 AYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT-FSFD  743 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh-cCcc
Confidence            999999999999999999999765 34446666667777777778888887777654 4443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.75  E-value=1.2e-14  Score=128.43  Aligned_cols=283  Identities=14%  Similarity=0.102  Sum_probs=167.1

Q ss_pred             cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHH--HHHHHHHhcCCcCcHH
Q 015673           75 SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFN--ALLFACTRSRLYDKVP  152 (403)
Q Consensus        75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~  152 (403)
                      .|+++.|.+.+......... +...+........+.|+++.|.+.|.++.+..  |+.....  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence            57777777666655432211 12223333444466777777777777776533  3332222  2345566677777777


Q ss_pred             HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-------hhHHHHHHHHHhcCCHHHHHHH
Q 015673          153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT-------VTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                      ..++.+.+  ..|-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++
T Consensus       174 ~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        174 HGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            77777754  23344556666777777777777777777777665443221       1233334444444455556666


Q ss_pred             HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673          226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS  304 (403)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  304 (403)
                      ++.+.+. .+.++.....+...+ ..|+.++|.+++++..+.  .|+...  .++.+....++.+++.+..+...+.. +
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P  325 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G  325 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence            6555432 123444444445555 777777777777776663  334321  12333334577777777777777653 3


Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      -|...+..+...|.+.+++++|.+.|+.+.+.  .|+...+..+...+.+.|+.++|.+++++...
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44555667777777777777777777777754  47777777777777777777777777776644

>TIGR00540 hemY_coli hemY protein

Probab=99.75  E-value=9.6e-15  Score=129.80  Aligned_cols=291  Identities=14%  Similarity=0.061  Sum_probs=167.7

Q ss_pred             HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673           73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP  152 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  152 (403)
                      ...|+++.|.+.+.+..... +.+...+......+.+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            35577777777776655322 22223334455666666777777777777655332222223333456666677777777


Q ss_pred             HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH-HHHHHHH---HhcCCHHHHHHHHHH
Q 015673          153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY-TTVLNCL---YKQGNAEEAERLWSE  228 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~---~~~~~~~~a~~~~~~  228 (403)
                      ..++.+.+.  -|-+...+..+...+.+.|+++.|.+.+..+.+.+.. +...+ ..-..++   ...+..+++.+.+..
T Consensus       174 ~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       174 HGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            777777653  2334556667777777777777777777777766543 22222 1111111   222233333334444


Q ss_pred             HHHcCC---CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhc---HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          229 MEKKGV---DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTIS---YNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       229 ~~~~~~---~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      +.+...   +.+...+......+ ..|+.+.|.+++++..+.  .||...   ...........++.+.+.+.++...+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            433311   12444455555555 777777777777777765  333321   111122223346667777777776655


Q ss_pred             CCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          302 GCSPNA--TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       302 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      . +-|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 3333  456677778888888888888888543334457777777888888888888888888887644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.74  E-value=4.5e-17  Score=137.68  Aligned_cols=259  Identities=15%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDP-KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS  145 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  145 (403)
                      .+...+.+.|++++|.++++...... .+.+..+|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            45777778888888888885544333 3455566666777777788888888888888776543 55566666666 677


Q ss_pred             CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCHHHHHH
Q 015673          146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-VEVTTVTYTTVLNCLYKQGNAEEAER  224 (403)
Q Consensus       146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~  224 (403)
                      +++++|.+++....++   .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus        91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888877766543   2455666777777888888888888888876432 34566777777788888888888888


Q ss_pred             HHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          225 LWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      .+++..+.  .|+ ......++..+ ..|+.+++..+++...+.. +.|...+..+..+|...|+.++|+.+|++..+..
T Consensus       168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            88888776  343 44455555555 6777777777777666553 3455566677777777777777777777777653


Q ss_pred             CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673          303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV  334 (403)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (403)
                       +.|+.....+..++...|+.++|.++.+++.
T Consensus       245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -TT-HHHHHHHHHHHT----------------
T ss_pred             -ccccccccccccccccccccccccccccccc
Confidence             4466667777777777777777777766543

>TIGR00540 hemY_coli hemY protein

Probab=99.73  E-value=4.8e-14  Score=125.37  Aligned_cols=293  Identities=14%  Similarity=0.051  Sum_probs=212.5

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      ....|+++.|.+.+....+..  |. +...+-....+....|+.+.|.+.+++..+....+...........+...|+++
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~--~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHA--AE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence            345799999999999888776  43 233344567788888999999999999864332222233444678888999999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHH-HHHHHHH---HhcCChHHHHHH
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY-GLLLKSH---CDSGSSDKALEL  190 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~---~~~~~~~~a~~~  190 (403)
                      .|...++.+.+..+. +...+..+...+...|++++|.+++..+.+. +.. +...+ ..-..++   ...+..+...+.
T Consensus       171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999987744 6778889999999999999999999999765 433 33323 2222222   333444445557


Q ss_pred             HHHHHhCCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh--hcCCChHHHHHHHHHHHH
Q 015673          191 LNEMENKGVE---VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN--TYGGDPERLKELIDEMRD  265 (403)
Q Consensus       191 ~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~a~~~~~~~~~  265 (403)
                      +..+.+....   .+...+..+...+...|+.++|.+++++..+.........+..+...  +..++.+.+.+.++...+
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            7766664221   37788888999999999999999999999986432222111122222  255788889999988877


Q ss_pred             CCCCCC-h--hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          266 AGLKPD-T--ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       266 ~~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      .  .|+ .  ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6  343 4  456688889999999999999999544433478998888999999999999999999988654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.73  E-value=4.6e-14  Score=124.76  Aligned_cols=287  Identities=12%  Similarity=0.069  Sum_probs=214.9

Q ss_pred             cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM  117 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  117 (403)
                      .|++++|.+.+....+..  +. ....|........+.|+++.|.+.++++.+................+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            699999998888776654  21 222233445555888999999999999874322221122223467888999999999


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch------HHHHHHHHHHHhcCChHHHHHHH
Q 015673          118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK------ISYGLLLKSHCDSGSSDKALELL  191 (403)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~  191 (403)
                      ..++.+.+..+. +......+...|.+.|++++|..++..+.+.....+..      .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999987754 67888899999999999999999999997753332221      13334444444555667777777


Q ss_pred             HHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCC
Q 015673          192 NEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPD  271 (403)
Q Consensus       192 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (403)
                      +.+.+. .+.++.....+...+...|+.++|.+++++..+.  .++.... .+...+..++.+++.+..+...+.. +-|
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-~l~~~l~~~~~~~al~~~e~~lk~~-P~~  327 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-LLIPRLKTNNPEQLEKVLRQQIKQH-GDT  327 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence            776554 4557888889999999999999999999998885  4444211 1222225689999999999998874 335


Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      ...+..+...|.+.+++++|.+.|+...+.  .|+...+..+...+.+.|+.++|.+++++...
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            667888999999999999999999999986  68999988999999999999999999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.72  E-value=3.5e-14  Score=129.08  Aligned_cols=347  Identities=14%  Similarity=0.086  Sum_probs=197.0

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      .+.+|...+.+.+.+...|++..++.+...+......-..-...|..+.+++-..|+++.|...|............-.+
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            34456677778888888888888888888887766322234455677888888888888888888777643222212234


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC----CcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR----LYDKVPILFDEIPKKYNLSPDKISYGLLLK  176 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  176 (403)
                      ..+...+.+.|+.+.+...|+.+.+..+. +..+...|...|...+    ..+.|..++.+..+  ..+.|...|-.+..
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~l~laq  422 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAWLELAQ  422 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence            45778888888888888888888775432 4555666666565553    33445555555544  22344555555555


Q ss_pred             HHHhcCChHHHHHHHHHHH----hCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCchH-------HHH
Q 015673          177 SHCDSGSSDKALELLNEME----NKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK---GVDLDVA-------AYN  242 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-------~~~  242 (403)
                      .+....-+ .++.+|..+.    ..+..+.+...|.+...+...|++.+|...|......   ...++..       -||
T Consensus       423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            44433322 2244444332    2333345555666666666666666666666555433   1112210       122


Q ss_pred             HHHhhhcC----------------------------------CChHHHHHHHHHHHHCC-CC------------------
Q 015673          243 VRITNTYG----------------------------------GDPERLKELIDEMRDAG-LK------------------  269 (403)
Q Consensus       243 ~ll~~~~~----------------------------------~~~~~a~~~~~~~~~~~-~~------------------  269 (403)
                      .....-..                                  +...+|...+......+ -.                  
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~  581 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK  581 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence            11100022                                  33333333333322111 01                  


Q ss_pred             ----------------CChhcHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015673          270 ----------------PDTISYNFLMTCYCK------------NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG  321 (403)
Q Consensus       270 ----------------~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  321 (403)
                                      +|..+.-.|...|.+            .+..++|+++|.++++.. +.|...-+.+.-+++..|
T Consensus       582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg  660 (1018)
T KOG2002|consen  582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG  660 (1018)
T ss_pred             ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence                            122222222222221            234566777777777664 456666666777777778


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      ++.+|..+|.+..+.. .....+|..+.++|...|++-.|++.|+...+.+.
T Consensus       661 ~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~  711 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY  711 (1018)
T ss_pred             CchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888887777654 23445666777788888888888888877766533

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=6.8e-14  Score=112.00  Aligned_cols=231  Identities=18%  Similarity=0.152  Sum_probs=110.1

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH---HHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP---YLCNLI  104 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~  104 (403)
                      |..-++.|.+ +++++|+++|-+|.+.+  | .+..+...+.+.|.+.|..+.|+++.+.+...+..+...   ....|.
T Consensus        39 Yv~GlNfLLs-~Q~dKAvdlF~e~l~~d--~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~  114 (389)
T COG2956          39 YVKGLNFLLS-NQPDKAVDLFLEMLQED--P-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG  114 (389)
T ss_pred             HHhHHHHHhh-cCcchHHHHHHHHHhcC--c-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            3333444433 35666666666666544  2 133334455556666666666666666655433322221   123355


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc----hHHHHHHHHHHHh
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD----KISYGLLLKSHCD  180 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~  180 (403)
                      .-|...|-+|.|..+|..+.+.+. .-..+...|+..|-...+|++|+++-.++.+. +-.+.    ..-|.-+...+..
T Consensus       115 ~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         115 RDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhh
Confidence            555566666666666666554332 13444555555565556666666555555433 21111    1123334444444


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKEL  259 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~  259 (403)
                      ..+.+.|..++.+..+.+. ..+..-..+.+.....|++++|.+.++.+.+.+..--......+..+| ..|+.++....
T Consensus       193 ~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f  271 (389)
T COG2956         193 SSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF  271 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4555555555555554422 122333344445555555555555555555543332333333444444 44444444444


Q ss_pred             HHHHHH
Q 015673          260 IDEMRD  265 (403)
Q Consensus       260 ~~~~~~  265 (403)
                      +..+.+
T Consensus       272 L~~~~~  277 (389)
T COG2956         272 LRRAME  277 (389)
T ss_pred             HHHHHH
Confidence            444443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=6.5e-13  Score=110.48  Aligned_cols=347  Identities=12%  Similarity=0.110  Sum_probs=248.3

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      .|....++..+|.++++--..+.|.+++++.....++  ....+|+.+|.+-.-.    .-.+++.+|......|+..++
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~Tf  276 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTF  276 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhH
Confidence            3455678899999999999999999999999887743  3777888777654433    226788888888888999999


Q ss_pred             HHHHHHHhccCCHHHH----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc-HHHHHHHchhhC---CCCC----ch
Q 015673          101 CNLIRSYGQAGMFDHA----MRTFDQMDELGTPRSVISFNALLFACTRSRLYDK-VPILFDEIPKKY---NLSP----DK  168 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~---~~~~----~~  168 (403)
                      |+++.+..+.|+++.|    ++++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++....   .++|    |.
T Consensus       277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~  356 (625)
T KOG4422|consen  277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN  356 (625)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence            9999999999987765    5677788999999999999999998888877654 444444443211   2222    44


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKG----VEVT---TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY  241 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (403)
                      .-|...+..|....+.+.|.++-.-+....    +.|+   ..-|..+..+.|+....+.....|+.|.-.-.-|+..+.
T Consensus       357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m  436 (625)
T KOG4422|consen  357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM  436 (625)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence            556777888888889888888876654321    2222   234667777888888899999999999888788888888


Q ss_pred             HHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcC-Ch--------HH-----HHHHH-------HHHH
Q 015673          242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE-MM--------DE-----AKKVY-------EGLE  299 (403)
Q Consensus       242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----A~~~~-------~~~~  299 (403)
                      ..++.+. ..+.++-.-+++..+...|...+...-..++..+++.. ..        ..     |..++       .++.
T Consensus       437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r  516 (625)
T KOG4422|consen  437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR  516 (625)
T ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8899888 88889888888888887764444444444444444332 11        00     11111       1233


Q ss_pred             HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI----PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       300 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      +.  .......+.+...+.+.|+.++|.+++..+.+.+-+    |.......+++.-.+.+.+-.|..+++-+.....|.
T Consensus       517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~  594 (625)
T KOG4422|consen  517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI  594 (625)
T ss_pred             hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence            33  344556677777899999999999999988665422    444555577788888899999999999886644443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=5.3e-17  Score=137.22  Aligned_cols=261  Identities=15%  Similarity=0.169  Sum_probs=109.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELG-TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      .+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++... + +-+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence            56888899999999999996654433 2335566666777788899999999999999864 2 2245567777777 78


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHhhh-cCCChHHHHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-DLDVAAYNVRITNT-YGGDPERLKE  258 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~-~~~~~~~a~~  258 (403)
                      .+++++|.++++...+..  ++...+..++..+...++++++..+++.+....- ..+...|......+ ..|+.++|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998876643  4667788889999999999999999999876432 33445555555555 8999999999


Q ss_pred             HHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673          259 LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK  338 (403)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (403)
                      .+++..+.. +.|....+.++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|+..|++..... 
T Consensus       168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            999999873 2257778889999999999999999998887664 4566678889999999999999999999998866 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          339 IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +.|+.+...+.+++...|+.++|.++.++..+
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            67899999999999999999999999888754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.69  E-value=7.1e-13  Score=109.40  Aligned_cols=286  Identities=14%  Similarity=0.094  Sum_probs=213.2

Q ss_pred             hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHH
Q 015673           74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI  153 (403)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  153 (403)
                      -.|+|..|+++..+....+..| ...|..-+.+.-+.|+.+.+-.++.++-+....++....-+........|+++.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3588888888888876544444 344666777778888888888888888875444566667777777888888888888


Q ss_pred             HHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-------hhHHHHHHHHHhcCCHHHHHHHH
Q 015673          154 LFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT-------VTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      -++++.+  .-+-+........++|.+.|++.....++.++.+.|.-.+.       .+|..+++-....+..+.-...|
T Consensus       175 ~v~~ll~--~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         175 NVDQLLE--MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHH--hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            8888865  33445667788888888999999999999888887765443       46788888777777777777777


Q ss_pred             HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673          227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP  305 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  305 (403)
                      +..... ...++..-..++..+ ..|+.++|.++.++..+.+..|+    -.....+.+-++...-++..++-.+.. +.
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~  326 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PE  326 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence            776543 344455555555566 88999999999888888766655    223345567778877777777766542 44


Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ++..+.++...|.+.+.+.+|...|+..++.  .|+..+|..+.+++.+.|++.+|.++.++..-
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5578888888899999999999999877754  58888999999999999999999988888764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1e-12  Score=105.44  Aligned_cols=286  Identities=13%  Similarity=0.125  Sum_probs=216.5

Q ss_pred             HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHHHHhcC
Q 015673           73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV------ISFNALLFACTRSR  146 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~  146 (403)
                      .-+++.++|.++|-++.+ ..+.+..+..+|.+.|-+.|..+.|+++.+.+.++   ||.      .+...|..-|...|
T Consensus        46 LLs~Q~dKAvdlF~e~l~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQ-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             HhhcCcchHHHHHHHHHh-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence            345788999999999985 55555666678999999999999999999998875   442      23455666788999


Q ss_pred             CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch----hhHHHHHHHHHhcCCHHHH
Q 015673          147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT----VTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a  222 (403)
                      -++.|+.+|..+.+...+  -......|+..|-...+|++|+++-+++.+.+-.+..    ..|.-+...+....+.+.|
T Consensus       122 l~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A  199 (389)
T COG2956         122 LLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA  199 (389)
T ss_pred             hhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence            999999999999764222  3445778999999999999999999998887544332    3455566666677889999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673          223 ERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE  300 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  300 (403)
                      ..++.+..+.  .|+.+--++++.-.  ..|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+
T Consensus       200 ~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         200 RELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9999999886  45555566666655  8899999999999999885444456778899999999999999999999887


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 015673          301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK---KKKIKEAKGVIRTIKK  370 (403)
Q Consensus       301 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~  370 (403)
                      .  .+....-..+.+......-.+.|...+.+-+..  +|+...+..++..-..   .|..++...++++|..
T Consensus       278 ~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         278 T--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             c--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            6  344444445555555555567777766665543  5899888888887665   4557777778888764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=6.2e-14  Score=122.72  Aligned_cols=285  Identities=12%  Similarity=0.014  Sum_probs=218.0

Q ss_pred             CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673           77 RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT--PRSVISFNALLFACTRSRLYDKVPIL  154 (403)
Q Consensus        77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~  154 (403)
                      +..+|...|+++. .....+..+...+.++|...+++++|.++|+.+.+..+  .-+...|.+.+-.+-+.    -++..
T Consensus       334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            5678888999854 34445556677899999999999999999999987542  12677788777654432    12222


Q ss_pred             -HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          155 -FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       155 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                       -+.+++  ..+-.+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus       409 Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  409 LAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence             222222  223467889999999999999999999999999863 2377889988888999999999999999987653


Q ss_pred             CCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673          234 VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW  313 (403)
Q Consensus       234 ~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  313 (403)
                      ..--...|...+..++.++++.|+-.|++..+.+ +.+.+....+...+-+.|+.++|++++++....+ +.|+..--..
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~  563 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR  563 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence            3222333334444449999999999999999875 3366777788888999999999999999998776 4455555566


Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      +..+...++.++|+..++++.+.- +.+...|..+...|.+.|+.+.|..-|.-+.+..
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            778889999999999999998643 5556778888999999999999999998887633

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1.1e-12  Score=109.14  Aligned_cols=322  Identities=16%  Similarity=0.197  Sum_probs=226.1

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHH--hcCCcchHH-HHHHHhh--------------
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLA--KSKRFSDIE-TLIESHK--------------   89 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~--~~~~~~~a~-~~~~~~~--------------   89 (403)
                      +-+.+ -.+.+.|...++.-+|+.|...++..  +...-..+++..+  ...+..-|+ +.|-.+.              
T Consensus       118 ~E~nL-~kmIS~~EvKDs~ilY~~m~~e~~~v--S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  118 TENNL-LKMISSREVKDSCILYERMRSENVDV--SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             chhHH-HHHHhhcccchhHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            33434 44556789999999999999988533  3333333333221  111111111 1111111              


Q ss_pred             -----cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673           90 -----NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL  164 (403)
Q Consensus        90 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  164 (403)
                           ....|.+..++..+|.+.++-...+.|.++|++..+...+.+..+||.+|.+-.-..+    .+++.+|... .+
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km  269 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KM  269 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hc
Confidence                 1123455667888999999999999999999999888788899999999987544322    7888899877 88


Q ss_pred             CCchHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCC
Q 015673          165 SPDKISYGLLLKSHCDSGSSDK----ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE-AERLWSEMEKK----GVD  235 (403)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~  235 (403)
                      .||..|+|+++++..+.|+++.    |.+++.+|++.|+.|+..+|..+|..+++-++..+ +..++.++...    ..+
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            9999999999999999998765    56778889999999999999999998888887644 55555555432    122


Q ss_pred             ---C-chHHHHHHHhhh-cCCChHHHHHHHHHHHHCC----CCCC---hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015673          236 ---L-DVAAYNVRITNT-YGGDPERLKELIDEMRDAG----LKPD---TISYNFLMTCYCKNEMMDEAKKVYEGLEENGC  303 (403)
Q Consensus       236 ---~-~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  303 (403)
                         | |...|...+..| ...+.+.|.++..-+....    +.|+   ...|..+....++....+.-...|+.|.-.-+
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence               2 344556666666 7788888888777665321    2222   23355666777778888888999999987777


Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673          304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK  356 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  356 (403)
                      -|+..+...++++....|.++-.-++|.+++..|...+......++..+++.+
T Consensus       430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k  482 (625)
T KOG4422|consen  430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK  482 (625)
T ss_pred             cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence            88888988999999999999999899988888775555555555555555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=5.9e-13  Score=111.61  Aligned_cols=167  Identities=14%  Similarity=0.154  Sum_probs=102.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCC---------------------------
Q 015673          215 KQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAG---------------------------  267 (403)
Q Consensus       215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~---------------------------  267 (403)
                      ..|++++|.+.+++.+...-.-....||+-+.+-..|+.++|++.|-++...-                           
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            44677777777777776655555556666555556677777776665543220                           


Q ss_pred             ------CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673          268 ------LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD  341 (403)
Q Consensus       268 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (403)
                            ++.|+.....|...|-+.|+-..|.+.+-+--.. ++-|..+...|...|....-+++++.+|++..  -++|+
T Consensus       582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~  658 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN  658 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence                  2223444445555555555555555443332221 23345555555555555556667777777654  45799


Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          342 FNTVKLLVEGL-VKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       342 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      ..-|..++..| .+.|++++|..+++.+.+++|.+.. ...-|.+
T Consensus       659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld-clkflvr  702 (840)
T KOG2003|consen  659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD-CLKFLVR  702 (840)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH-HHHHHHH
Confidence            99998876654 5689999999999999988887743 4444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=3.9e-12  Score=105.12  Aligned_cols=292  Identities=16%  Similarity=0.131  Sum_probs=235.1

Q ss_pred             ccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 015673           37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHA  116 (403)
Q Consensus        37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  116 (403)
                      ..|+|.+|.++..+..+.+..   ....|..-+++--..|+.+.+-.++.++.+....++........+.....|+++.|
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence            379999999999998887732   34556666777788899999999999998665566666777788889999999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch-------HHHHHHHHHHHhcCChHHHHH
Q 015673          117 MRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK-------ISYGLLLKSHCDSGSSDKALE  189 (403)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~  189 (403)
                      ..-++++.+.++. +.........+|.+.|++.....++..+.+. +.-.+.       .+|..+++-....+..+.-..
T Consensus       173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~  250 (400)
T COG3071         173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT  250 (400)
T ss_pred             HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            9999999887754 7788888999999999999999999999776 554443       457777777777777777777


Q ss_pred             HHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCC
Q 015673          190 LLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLK  269 (403)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~  269 (403)
                      .++..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|.   ...++..+..++.+.-++..+...+.. +
T Consensus       251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h-~  325 (400)
T COG3071         251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQH-P  325 (400)
T ss_pred             HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence            88777655 555677778888889999999999999999998876665   333444447788888888888776653 3


Q ss_pred             CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673          270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP  340 (403)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (403)
                      .++..+.+|...|.+.+.|.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.++.++....-.+|
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            35577888999999999999999999987776  7899999999999999999999999998877544343

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.65  E-value=6.7e-13  Score=120.93  Aligned_cols=346  Identities=13%  Similarity=0.058  Sum_probs=221.4

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC--------------
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND--------------   91 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------   91 (403)
                      .+|.-+.+.+-..|++++|...|....+.+  +......+.-+.+.+...|+++.+...|+.+...              
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            345666777777777777777777666665  4433444455666677777777766666666531              


Q ss_pred             -----------------------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH----HhCCCCCcHHHHHHHHHHHHh
Q 015673           92 -----------------------PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM----DELGTPRSVISFNALLFACTR  144 (403)
Q Consensus        92 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~ll~~~~~  144 (403)
                                             ..+.+...|..+...+. .++...++.+|..+    ...+..+.+...|.+......
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~  464 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR  464 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence                                   11222223333333332 22333334444433    233444677888888888888


Q ss_pred             cCCcCcHHHHHHHchhhCC--CCCc------hHHHHHHHHHHHhcCChHH------------------------------
Q 015673          145 SRLYDKVPILFDEIPKKYN--LSPD------KISYGLLLKSHCDSGSSDK------------------------------  186 (403)
Q Consensus       145 ~~~~~~a~~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~------------------------------  186 (403)
                      .|++++|...|........  ..+|      ..+-..+...+-..++.+.                              
T Consensus       465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~  544 (1018)
T KOG2002|consen  465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN  544 (1018)
T ss_pred             hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc
Confidence            8888888888887754310  1222      2222333333334444444                              


Q ss_pred             ----HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHH----HHHHhhh---------
Q 015673          187 ----ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-DLDVAAY----NVRITNT---------  248 (403)
Q Consensus       187 ----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~----~~ll~~~---------  248 (403)
                          |...+...... ...++..++.+...+.+...+..|.+-|..+.+.-. .+|....    |..+..+         
T Consensus       545 ~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek  623 (1018)
T KOG2002|consen  545 NLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK  623 (1018)
T ss_pred             CcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence                44444444433 223445555566666666666666665555544321 1232222    2222222         


Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..+..++|+++|.+..... +-|...-|-+.-+++..|++.+|..+|..+.+.. .-+..+|-.+..+|..+|++..|++
T Consensus       624 ~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIq  701 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQ  701 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHH
Confidence            1135678899999888775 4477888888889999999999999999999875 3355688899999999999999999


Q ss_pred             HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673          329 VFKESVMVHK-IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL  377 (403)
Q Consensus       329 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  377 (403)
                      .|+...+... ..++.+...|..++.+.|.+.+|.+.+.......|.+..
T Consensus       702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence            9999877643 467889999999999999999999999998876665544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=5.1e-14  Score=123.23  Aligned_cols=289  Identities=13%  Similarity=0.036  Sum_probs=216.8

Q ss_pred             cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCCHHHHHHHHHHHhccCCHHH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPK--ITQEPYLCNLIRSYGQAGMFDH  115 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~  115 (403)
                      .-+.++|+..|+......   .+..+....+.++|...+++++|+.+|+.+.+...  ..+.++|.+.+..+-   +.-+
T Consensus       332 ~y~~~~A~~~~~klp~h~---~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~  405 (638)
T KOG1126|consen  332 QYNCREALNLFEKLPSHH---YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVA  405 (638)
T ss_pred             HHHHHHHHHHHHhhHHhc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHH
Confidence            346789999999965555   33457778899999999999999999999975322  234456666654432   2111


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      ---+-+.+.+.+. -.+.+|.++.++|.-+++.+.|++.|++.+   .+.| ...+|+.+..-+.....+|.|...|+..
T Consensus       406 Ls~Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~A  481 (638)
T KOG1126|consen  406 LSYLAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA  481 (638)
T ss_pred             HHHHHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence            1122233444333 378899999999999999999999999997   4556 6789999999999999999999999998


Q ss_pred             HhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChh
Q 015673          195 ENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTI  273 (403)
Q Consensus       195 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~  273 (403)
                      .... +.+-..|..+...|.+.++++.|+-.|++..+.+.. +.+....+-..+ +.|+.++|+.++++....+.+ |+.
T Consensus       482 l~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l  558 (638)
T KOG1126|consen  482 LGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL  558 (638)
T ss_pred             hcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence            7642 123344555778899999999999999999887533 223333333334 889999999999999877533 554


Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP  340 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (403)
                      .--..+..+...++.++|+..++++.+.- +-+...|..+...|.+.|+.+.|+.-|.-+.+.+.+.
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            44456777788999999999999999872 3345577788889999999999999999988765443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.64  E-value=4.8e-12  Score=110.75  Aligned_cols=347  Identities=13%  Similarity=0.037  Sum_probs=244.8

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      .+|..-...+.+.+.++-|+.+|..+++..  |. ....|...+..--..|..+....+|++... ..+.....|.....
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvf--p~-k~slWlra~~~ek~hgt~Esl~Allqkav~-~~pkae~lwlM~ak  592 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVF--PC-KKSLWLRAAMFEKSHGTRESLEALLQKAVE-QCPKAEILWLMYAK  592 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcchhHHHHHHH
Confidence            456666677777777888888888887766  43 445566666666666888888888888774 34455566777777


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                      .+-..|+...|..++..+.+.... +...|..-+.....+.+++.|..+|.+..   ...|+...|..-+..---.+..+
T Consensus       593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHH
Confidence            777888888888888888776654 67778888888888888888888888875   45567777766666666678888


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEM  263 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~  263 (403)
                      +|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+.  -|+..-.-.++.-+  ..|++-+|..+++..
T Consensus       669 eA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  669 EALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             HHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            888888888776 5445566777778888888888888887765554  46655555556555  778889999999988


Q ss_pred             HHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 015673          264 RDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFN  343 (403)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  343 (403)
                      .-.+ +-+...|-..|+.-.+.|..+.|..++.+.++. ++.+...|..-|....+.++-......+++.     ..|+.
T Consensus       746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph  818 (913)
T KOG0495|consen  746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH  818 (913)
T ss_pred             HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence            7775 347778888899888999999998888877754 2334445555555555555544444444332     34555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          344 TVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      ....+...+....++++|.+.|.+..+ ..|+...+|.-+..-+..+|
T Consensus       819 Vllaia~lfw~e~k~~kar~Wf~Ravk-~d~d~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  819 VLLAIAKLFWSEKKIEKAREWFERAVK-KDPDNGDAWAWFYKFELRHG  865 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCccchHHHHHHHHHHHhC
Confidence            566666666677777777777777765 45555666666666655555

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=2.6e-13  Score=113.70  Aligned_cols=353  Identities=15%  Similarity=0.125  Sum_probs=205.8

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH----HHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP----YLCN  102 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~  102 (403)
                      .+..+...|..+..+.+|+..|+-+.+....|..... -..+...+.+...+.+|+..|+.........+..    ..+.
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~l-kmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n  281 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGIL-KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN  281 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCcee-eeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence            3445566666777888999999988887765543222 2345667778888899999888776443333332    3455


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-----------CCchHHH
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-----------SPDKISY  171 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~  171 (403)
                      +.-.+.+.|+++.|+..|+...+..  |+..+-..|+-++.--|+-++..+.|.+|+...+.           .|+....
T Consensus       282 igvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll  359 (840)
T KOG2003|consen  282 IGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL  359 (840)
T ss_pred             cCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence            5566778899999999999887744  77666666666666678888888888888754321           1222222


Q ss_pred             HHHH-----HHHHhcCChHHHHHHHHH---HHhCCCCCchh---------------------hHHHHHHHHHhcCCHHHH
Q 015673          172 GLLL-----KSHCDSGSSDKALELLNE---MENKGVEVTTV---------------------TYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       172 ~~l~-----~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~---------------------~~~~ll~~~~~~~~~~~a  222 (403)
                      +.-+     .-..+. +-..|.+.+-.   +...-+.|+-.                     .-..-...+.+.|+++.|
T Consensus       360 ~eai~nd~lk~~ek~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a  438 (840)
T KOG2003|consen  360 NEAIKNDHLKNMEKE-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA  438 (840)
T ss_pred             HHHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence            2211     111111 11112222211   11111111100                     000112235566777777


Q ss_pred             HHHHHHHHHcCCCCc-------------------------------hHHHHHHH------hhhcCCChHHHHHHHHHHHH
Q 015673          223 ERLWSEMEKKGVDLD-------------------------------VAAYNVRI------TNTYGGDPERLKELIDEMRD  265 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~-------------------------------~~~~~~ll------~~~~~~~~~~a~~~~~~~~~  265 (403)
                      ++++.-+.+..-...                               ..-||...      .++..|++++|.+.+++...
T Consensus       439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~  518 (840)
T KOG2003|consen  439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN  518 (840)
T ss_pred             HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence            776665544321110                               00111100      11256999999999999986


Q ss_pred             CCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------------CCCCCHHHHHH
Q 015673          266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN---------------------------------GCSPNATTFRT  312 (403)
Q Consensus       266 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------------~~~~~~~~~~~  312 (403)
                      .+-......|| +.-.+-..|++++|+..|-++...                                 -++.|+.+...
T Consensus       519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk  597 (840)
T KOG2003|consen  519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK  597 (840)
T ss_pred             CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence            53222223333 233455667777777666543210                                 13456667777


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      |...|-+.|+-.+|.+++-+--. -++.+.++...|..-|....-+++++.+|++..- ..|+. ..|..|+.-|
T Consensus       598 l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~-~kwqlmiasc  669 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQ-SKWQLMIASC  669 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccH-HHHHHHHHHH
Confidence            77777777877777777655333 3466777777788888888888888888887753 55664 4888877654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.62  E-value=8e-12  Score=113.26  Aligned_cols=342  Identities=15%  Similarity=0.110  Sum_probs=258.2

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      |.....|..+...+-..|+.++++..+-.+-..+  |. +...|..+.....+.|.+++|.-.|.++.+ -.|++...+-
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~-~~p~n~~~~~  245 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PK-DYELWKRLADLSEQLGNINQARYCYSRAIQ-ANPSNWELIY  245 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcchHHHH
Confidence            4456789999999999999999999887776666  55 448899999999999999999999999985 4455566666


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH----HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL----LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      .-+..|-+.|+...|...|.++....++.|..-+..+    +..+...++-+.|.+.+.......+-..+...+++++..
T Consensus       246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael  325 (895)
T KOG2076|consen  246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL  325 (895)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence            6778899999999999999999987654444444443    444666677788888888877654555566778999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCC---------------------------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          178 HCDSGSSDKALELLNEMENKG---------------------------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEME  230 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  230 (403)
                      +.+...++.|......+....                           ..++..++. +.-++...+..+....+.....
T Consensus       326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~  404 (895)
T KOG2076|consen  326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLV  404 (895)
T ss_pred             HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHH
Confidence            999999999999888876621                           122222311 2223444444555555555555


Q ss_pred             HcC--CCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 015673          231 KKG--VDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA  307 (403)
Q Consensus       231 ~~~--~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  307 (403)
                      ...  +.-+...|.-+..++ ..|.+..|..+|..+...-..-+...|..+.++|...|..++|.+.|+..+... +-+.
T Consensus       405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~  483 (895)
T KOG2076|consen  405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNL  483 (895)
T ss_pred             HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCch
Confidence            555  333456677777888 999999999999999887544567789999999999999999999999999763 3445


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          308 TTFRTWIYHLCGSGNFDKAYKVFKESVMV--------HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      ..-.+|...+.+.|+.++|.+.+..+..-        ...|.........+.+.+.|+.++-......|.
T Consensus       484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            56667778899999999999999985532        344666677778889999999888666655554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1e-11  Score=105.16  Aligned_cols=331  Identities=14%  Similarity=0.052  Sum_probs=224.0

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      +....+-+.++|.+++|++.|.+++...  |.. +..|....-+|...|+++++.+.-.+... -.|.-...+..-..++
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~e-piFYsNraAcY~~lgd~~~Vied~TkALE-l~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDE-PIFYSNRAACYESLGDWEKVIEDCTKALE-LNPDYVKALLRRASAH  193 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence            4456788899999999999999999988  542 45578888899999999988887776663 2223333444455566


Q ss_pred             hccCCHHHHHHH----------------------HHH---------HHhCC--CCCcHHHHHHHHHH-------------
Q 015673          108 GQAGMFDHAMRT----------------------FDQ---------MDELG--TPRSVISFNALLFA-------------  141 (403)
Q Consensus       108 ~~~~~~~~A~~~----------------------~~~---------~~~~~--~~~~~~~~~~ll~~-------------  141 (403)
                      -..|++++|+.-                      ++.         +.+.+  +-|+.....+....             
T Consensus       194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~  273 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS  273 (606)
T ss_pred             HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence            666666665321                      111         01011  11221111111111             


Q ss_pred             --------------------------------------------------------------HHhcCCcCcHHHHHHHch
Q 015673          142 --------------------------------------------------------------CTRSRLYDKVPILFDEIP  159 (403)
Q Consensus       142 --------------------------------------------------------------~~~~~~~~~a~~~~~~~~  159 (403)
                                                                                    +.-.|+.-.|..-|+..+
T Consensus       274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I  353 (606)
T KOG0547|consen  274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI  353 (606)
T ss_pred             ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence                                                                          111234444444455544


Q ss_pred             hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-h
Q 015673          160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-V  238 (403)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~  238 (403)
                      ..  .+.+...|--+...|....+.++..+.|++..+.+. -++.+|..-.+.+.-.+++++|..=|++.+..  .|. .
T Consensus       354 ~l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~  428 (606)
T KOG0547|consen  354 KL--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENA  428 (606)
T ss_pred             hc--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chhhh
Confidence            32  112223366777788888888999999998888743 46777777778888888999999999998876  333 3


Q ss_pred             HHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH--HH
Q 015673          239 AAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS-----PNAT--TF  310 (403)
Q Consensus       239 ~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~--~~  310 (403)
                      ..|-.+..+. +.+.++++...|++..++ ++.-+..|+.....+...++++.|.+.|+..++....     .+..  +.
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~  507 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence            3444444444 889999999999999887 3445778999999999999999999999998865211     1222  22


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      -.++..-. .+++..|.+++++.++.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus       508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  508 KALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            22222222 389999999999999877 45567888999999999999999999998754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.9e-10  Score=97.34  Aligned_cols=352  Identities=8%  Similarity=0.020  Sum_probs=200.1

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      ...+...|-.-+..=.++.+...|..+|+++...-  |..+ ..|.-.+.+--..|++..|.++|+...  ...|+...|
T Consensus       103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVd-qlWyKY~ymEE~LgNi~gaRqiferW~--~w~P~eqaW  177 (677)
T KOG1915|consen  103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVD-QLWYKYIYMEEMLGNIAGARQIFERWM--EWEPDEQAW  177 (677)
T ss_pred             ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHH-HHHHHHHHHHHHhcccHHHHHHHHHHH--cCCCcHHHH
Confidence            34455566666666667777777777777777665  4433 334444555556677777777777766  355667777


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHH
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHC  179 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  179 (403)
                      .+.|+.-.+-+.++.|..+|++..-  +.|++.+|-.....-.++|+...+..+|...++..|-.. +...+.+....-.
T Consensus       178 ~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe  255 (677)
T KOG1915|consen  178 LSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE  255 (677)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777665  336777776666666666666666666665554332110 0111111111111


Q ss_pred             hcCChHHHHHHHHHH--------------------------------------------HhCCCCCchhhHHHHHHHHHh
Q 015673          180 DSGSSDKALELLNEM--------------------------------------------ENKGVEVTTVTYTTVLNCLYK  215 (403)
Q Consensus       180 ~~~~~~~a~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ll~~~~~  215 (403)
                      +...++.|.-+|+-.                                            .+. .+.|-.+|--.+..--.
T Consensus       256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~  334 (677)
T KOG1915|consen  256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEES  334 (677)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHh
Confidence            111111111111111                                            111 12234445555555555


Q ss_pred             cCCHHHHHHHHHHHHHcC-------------------------------------------CCCchHHHHHH---Hhhh-
Q 015673          216 QGNAEEAERLWSEMEKKG-------------------------------------------VDLDVAAYNVR---ITNT-  248 (403)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~-------------------------------------------~~~~~~~~~~l---l~~~-  248 (403)
                      .|+.+...++|++.+..-                                           ++....||.-+   ...+ 
T Consensus       335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe  414 (677)
T KOG1915|consen  335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE  414 (677)
T ss_pred             cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            566666666665555431                                           11112222211   1111 


Q ss_pred             -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673          249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY  327 (403)
Q Consensus       249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (403)
                       ++.+...|.+++....  |.-|-..+|...|..-.+.++++.+..+|++.++.+ +-|..+|......-...|+.+.|.
T Consensus       415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR  491 (677)
T KOG1915|consen  415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR  491 (677)
T ss_pred             HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence             4444445555444433  335555666666666667777888888888887765 556677777777777788888888


Q ss_pred             HHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          328 KVFKESVMVHK-IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       328 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      .+|+-+++... ......|...|+--...|.++.|..+++++.++-+-.  ..|.....
T Consensus       492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~--kvWisFA~  548 (677)
T KOG1915|consen  492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV--KVWISFAK  548 (677)
T ss_pred             HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc--hHHHhHHH
Confidence            88888776532 1233455666666677888888888888887643222  25655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1.6e-10  Score=97.82  Aligned_cols=339  Identities=13%  Similarity=0.119  Sum_probs=227.6

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      =.+++++..|..+|++++..+   ..+...|...+.+-.+..++..|..+++.... ..|.-...|...+..--..|+..
T Consensus        83 Eesq~e~~RARSv~ERALdvd---~r~itLWlkYae~Emknk~vNhARNv~dRAvt-~lPRVdqlWyKY~ymEE~LgNi~  158 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVD---YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-ILPRVDQLWYKYIYMEEMLGNIA  158 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhcccH
Confidence            345678889999999999877   33556677778888899999999999999984 34444556777777777889999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      .|.++|++-.+  ..|+..+|++.++.-.+.+.++.|..+|+...   -+.|+..+|-.....-.+.|+...|..+|+.+
T Consensus       159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            99999999987  45999999999999999999999999999997   66799999999999999999999999999887


Q ss_pred             HhC-CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------C---------------
Q 015673          195 ENK-GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK------------------------G---------------  233 (403)
Q Consensus       195 ~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------~---------------  233 (403)
                      .+. |- ..+...+.+....-.++..++.|.-+|.-.++.                        |               
T Consensus       234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~  313 (677)
T KOG1915|consen  234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK  313 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence            654 11 012223333333333333444444333332221                        0               


Q ss_pred             ----CCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCCh-------hcHHHH---HHHHHhcCChHHHHHHHHHH
Q 015673          234 ----VDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDT-------ISYNFL---MTCYCKNEMMDEAKKVYEGL  298 (403)
Q Consensus       234 ----~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l---~~~~~~~~~~~~A~~~~~~~  298 (403)
                          -+-|-.+|-..+... ..|+.+...++|+..... ++|-.       ..|..+   +-.-....|.+.+.++|+..
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC  392 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                012334444555555 678999999999988765 34422       112111   11122467777788888776


Q ss_pred             HHCCCCCCHHHHHHH----HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          299 EENGCSPNATTFRTW----IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       299 ~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      ++. ++....||..+    .....++.++..|.+++...+  |.-|-..+|...|..-.+.++++....++++..+ +.|
T Consensus       393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~P  468 (677)
T KOG1915|consen  393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FSP  468 (677)
T ss_pred             Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCh
Confidence            663 23333344333    233345666777777776665  5556667777777777777777777777777766 444


Q ss_pred             hhHHHHHHHHHHh
Q 015673          375 NVLRAWKKVEEEL  387 (403)
Q Consensus       375 ~~~~~~~~l~~~~  387 (403)
                      .+-.+|....+.-
T Consensus       469 e~c~~W~kyaElE  481 (677)
T KOG1915|consen  469 ENCYAWSKYAELE  481 (677)
T ss_pred             HhhHHHHHHHHHH
Confidence            4444665554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=7.1e-11  Score=99.51  Aligned_cols=324  Identities=15%  Similarity=0.082  Sum_probs=225.3

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH--HHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL--CNLI  104 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~  104 (403)
                      .+...+-.+.+.|....|++.|.......  |. .-.+|..+....   .+.    +...... .+.+.+....  -.+.
T Consensus       166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~--P~-~W~AWleL~~li---t~~----e~~~~l~-~~l~~~~h~M~~~F~~  234 (559)
T KOG1155|consen  166 LLYLYGVVLKELGLLSLAIDSFVEVVNRY--PW-FWSAWLELSELI---TDI----EILSILV-VGLPSDMHWMKKFFLK  234 (559)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHhcC--Cc-chHHHHHHHHhh---chH----HHHHHHH-hcCcccchHHHHHHHH
Confidence            33334455566777777777777776655  43 223333333222   112    2222222 1222211111  1255


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC-CchHHHHHHHHHHHhcCC
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS-PDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  183 (403)
                      .++....+.++++.-.+.....|++-+...-+....+.....++++|+.+|+++.+..... -|..+|..++-.-  ..+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence            6666677888888888888888886555555555556677889999999999997742221 2556777665432  221


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      -  .+.++..-.-.--+--+.|...+.+-|...++.++|...|+...+.+  |. ...|+.+-.-+ ...+...|.+-++
T Consensus       313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            1  12222211111012245778888888999999999999999999874  44 34455444455 8899999999999


Q ss_pred             HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673          262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD  341 (403)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (403)
                      ..++-+ +-|-..|-.|.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......+ ..+
T Consensus       389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte  465 (559)
T KOG1155|consen  389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE  465 (559)
T ss_pred             HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence            999875 4588899999999999999999999999999874 6688899999999999999999999999999877 456


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ...+..|.+.|-+.++.++|...+++..+
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            78899999999999999999999998876

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.4e-11  Score=101.37  Aligned_cols=296  Identities=12%  Similarity=0.041  Sum_probs=223.0

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHh
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP--RSVISFNALLFACTR  144 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~  144 (403)
                      .+..++....+.+++..-.+.....+.+.+...-+....+.-...++++|+.+|+++.+.++-  -|..+|..++..  +
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~  309 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence            345666677788888888888887667666655566666677889999999999999987532  256777776643  3


Q ss_pred             cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 015673          145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAER  224 (403)
Q Consensus       145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  224 (403)
                      +.+-.- --+-+.......  --+.|+..+.+.|.-.++.++|..+|++..+.+. .....|+.+..-|....+...|++
T Consensus       310 ~~~skL-s~LA~~v~~idK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  310 NDKSKL-SYLAQNVSNIDK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             hhhHHH-HHHHHHHHHhcc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence            322111 111111212112  2456788888999999999999999999998744 367889999999999999999999


Q ss_pred             HHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015673          225 LWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC  303 (403)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  303 (403)
                      -++...+.. +.|-..|--+-.++ ..+-+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......| 
T Consensus       386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-  462 (559)
T KOG1155|consen  386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-  462 (559)
T ss_pred             HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence            999999874 34566666666777 7788889999999998863 4478899999999999999999999999999877 


Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKI-P-DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      ..+...+..+...+-+.++.++|...|++.++.    |.. | ......-|..-+.+.+++++|..........
T Consensus       463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            456788999999999999999999998887663    322 2 2233334667788899999998887777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.54  E-value=2e-11  Score=100.56  Aligned_cols=200  Identities=13%  Similarity=0.026  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673          168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN  247 (403)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  247 (403)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            4556666777777777777777777776542 334556666777777777777777777777665322 22333333333


Q ss_pred             h-cCCChHHHHHHHHHHHHCCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 015673          248 T-YGGDPERLKELIDEMRDAGLK-PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK  325 (403)
Q Consensus       248 ~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  325 (403)
                      + ..|++++|...++........ .....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            4 677777777777777654211 133456667788888999999999999888764 3456678888888899999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      |...+++..+.. +.+...+..+...+...|+.++|..+.+.+.+.
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999888763 556777777888888899999999988887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.53  E-value=8.2e-12  Score=115.40  Aligned_cols=248  Identities=17%  Similarity=0.100  Sum_probs=132.1

Q ss_pred             CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673           77 RFSDIETLIESHKNDPKITQEPYLCNLIRSYG---------QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL  147 (403)
Q Consensus        77 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  147 (403)
                      .+++|..+|++... ..|.....|..+..++.         ..+++++|...++++.+.++. +..++..+...+...|+
T Consensus       276 ~~~~A~~~~~~Al~-ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVN-MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            45666666666653 33334444444444332         223466777777777665543 55666666666666777


Q ss_pred             cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673          148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  227 (403)
                      +++|...|++..+.  .+.+...+..+..++...|++++|...++++.+.+.. +...+..++..+...|++++|...++
T Consensus       354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            77777777776642  2333455666666677777777777777777664221 22223333444555667777777776


Q ss_pred             HHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 015673          228 EMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENG-C  303 (403)
Q Consensus       228 ~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~  303 (403)
                      +..... .|+ ...+..+-..+ ..|+.++|...+.++...  .|+ ....+.+...|...|  +.|...++.+.+.. -
T Consensus       431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~  505 (553)
T PRK12370        431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR  505 (553)
T ss_pred             HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence            665542 232 22233333333 667777777777666543  222 233344444555555  36666666554321 1


Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      .+....+  +-..+.-.|+.+.+..+ +++.+.+
T Consensus       506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            1211122  22334445555555544 6655443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.52  E-value=2.9e-10  Score=99.90  Aligned_cols=346  Identities=9%  Similarity=0.032  Sum_probs=272.2

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      .....|......=-..|..++-..+|+++...-  |. ....|...+..+-..|++..|..++..+.. ..+.+...|..
T Consensus       548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pk-ae~lwlM~ake~w~agdv~~ar~il~~af~-~~pnseeiwla  623 (913)
T KOG0495|consen  548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PK-AEILWLMYAKEKWKAGDVPAARVILDQAFE-ANPNSEEIWLA  623 (913)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--Cc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHH-hCCCcHHHHHH
Confidence            344566666666677899999999999999888  43 445566677778888999999999999884 45568888999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      .+..-....+++.|..+|.+....+  |+...|.--+....-.++.++|++++++.++.  ++-=...|-.+.+.+-+.+
T Consensus       624 avKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~  699 (913)
T KOG0495|consen  624 AVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME  699 (913)
T ss_pred             HHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence            9999999999999999999998755  67777777777777789999999999999874  3333456788888999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      +++.|...|..-.+. ++..+..|..+...--+.|..-.|..+++...-.+.. +...|-..+..- +.|+.+.|..++.
T Consensus       700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999988876665 5566778888888888899999999999998877533 555666666665 9999999999999


Q ss_pred             HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673          262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD  341 (403)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (403)
                      +..+. ++.+...|..-|....+.++-..+...++   +.  .-|+...-.+...|....++++|.+.|.+..+.+ +..
T Consensus       778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk---kc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~  850 (913)
T KOG0495|consen  778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK---KC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN  850 (913)
T ss_pred             HHHHh-CCccchhHHHHHHhccCcccchHHHHHHH---hc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence            98876 34455667777776666666444444433   32  4577777788888999999999999999999876 556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673          342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE  386 (403)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  386 (403)
                      -.+|..+...+.+.|.-++-.+++.+... -.|.....|.++-..
T Consensus       851 GD~wa~fykfel~hG~eed~kev~~~c~~-~EP~hG~~W~avSK~  894 (913)
T KOG0495|consen  851 GDAWAWFYKFELRHGTEEDQKEVLKKCET-AEPTHGELWQAVSKD  894 (913)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCCcHHHHHhhh
Confidence            68888899999999999999999998876 445555577665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.52  E-value=7.3e-12  Score=103.22  Aligned_cols=199  Identities=14%  Similarity=0.036  Sum_probs=118.6

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..+...+...|++++|++.++++.+..  |. +...+..+...+...|++++|.+.+++.... .+.+...+..+..
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~  107 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD--PD-DYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHH
Confidence            345556666777777777777777776655  33 3445556666677777777777777766532 2334445556666


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTP-RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS  184 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (403)
                      .+...|++++|.+.|++....... .....+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence            667777777777777776653211 12334555555666666666666666666542  222344555666666666666


Q ss_pred             HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      ++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            6666666666554 233445555555666666666666666555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=4.5e-12  Score=101.94  Aligned_cols=259  Identities=12%  Similarity=0.107  Sum_probs=205.0

Q ss_pred             HhccCCHHHHHHHHHHHHhC---------CCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673          107 YGQAGMFDHAMRTFDQMDEL---------GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus       107 ~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      |...+++..|........+.         +...|-.--+.+..+|.+.|.+.+|.+.++.-.++   .|-+.||..|-++
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskv  265 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKV  265 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHH
Confidence            34556666666444333221         11122233367888999999999999999988754   5678889999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHH
Q 015673          178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERL  256 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a  256 (403)
                      |.+..++..|+.++.+-.+. .+-|+.....+.+.+-..++.++|.++++...+.. +.++.....+...+ ..++++.|
T Consensus       266 Y~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A  343 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA  343 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence            99999999999999998876 55566666677888888999999999999998863 23444444444445 88999999


Q ss_pred             HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673          257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA--TTFRTWIYHLCGSGNFDKAYKVFKESV  334 (403)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (403)
                      ...++.+...|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+.  .+|-.+.......|++.-|.+.|+-.+
T Consensus       344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129|consen  344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence            9999999999966 7889999999999999999999999998865434443  467788888889999999999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          335 MVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      ..+ ..+.+.++.|.-.-.+.|++++|..+++......
T Consensus       423 ~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  423 TSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             ccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            766 5677899999999999999999999999987643

>PRK12370 invasion protein regulator; Provisional

Probab=99.51  E-value=1.8e-11  Score=113.11  Aligned_cols=249  Identities=14%  Similarity=0.070  Sum_probs=158.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---------cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc
Q 015673          111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTR---------SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS  181 (403)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  181 (403)
                      +++++|+..|++..+..+. +...|..+..++..         .+++++|...+++..+  --+-+...+..+...+...
T Consensus       275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE--LDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHc
Confidence            3467888888888876543 45556555554432         2346778888888775  2334566777777788888


Q ss_pred             CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHH
Q 015673          182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELID  261 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~  261 (403)
                      |++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+....+....+..+...+..|++++|...++
T Consensus       352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            88888888888888763 34566777788888888888888888888887643322222222222336778888888888


Q ss_pred             HHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCC-CC
Q 015673          262 EMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA-TTFRTWIYHLCGSGNFDKAYKVFKESVMVH-KI  339 (403)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~  339 (403)
                      ++.+...+-+...+..+..++...|+.++|...+.++...  .|+. ...+.+...++..|  ++|...++.+.+.. ..
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            8776531223445666777788888888888888887654  3333 34444555666666  47777666665531 11


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +....+  +-..|.-.|+.+.+..+ +++.+
T Consensus       507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             hcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence            211112  33445556666555555 66654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.4e-11  Score=99.23  Aligned_cols=231  Identities=12%  Similarity=0.061  Sum_probs=193.5

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      +.+.++|.+.|.+.+|.+.|+...+..  |-+.||..|-..|.+..+...|+.++.+-.+  .++-|.....-+.+.+..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence            679999999999999999999887743  6788899999999999999999999999876  445555556677888899


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI  260 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~  260 (403)
                      .++.++|.++++...+. .+.++.....+...|.-.++++-|+..++++++.|+....-..|+.+..+..++++-++.-|
T Consensus       303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence            99999999999998876 44577777778888899999999999999999999886666666666666999999999999


Q ss_pred             HHHHHCCCCCCh--hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          261 DEMRDAGLKPDT--ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       261 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      +.....--.|+.  ..|..+.......||+..|.+.|+-...++ ..+...++.|...-.+.|++++|..+++...+..
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            988765444443  467778888888999999999999988775 4567789999988999999999999999877543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4e-10  Score=97.44  Aligned_cols=273  Identities=8%  Similarity=0.012  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      .....-..-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-..+=.++.+  ..|....+|-++.-.
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGCY  321 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHHH
Confidence            3344455667788999999999999988654 5777777777899999999888888888876  556678899999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHH
Q 015673          178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK  257 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~  257 (403)
                      |.-.|+..+|.++|.+....+.. =...|-.+...|+-.|..|+|...+...-+.=.......+-+.+...+.++.+.|.
T Consensus       322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence            99999999999999998765322 34678889999999999999999998877652222233333333333789999999


Q ss_pred             HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673          258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----G--CSPNATTFRTWIYHLCGSGNFDKAYKVFK  331 (403)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (403)
                      +.|.+..... +.|+...+-+.......+.+.+|..+|+.....    +  ...-..+++.+..+|.+.+.+++|+..++
T Consensus       401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            9999988763 446778888887777889999999999987621    1  11245578889999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673          332 ESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL  377 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  377 (403)
                      +.+... +.+..++..+.-.|...|+++.|...|.+..- ..|++.
T Consensus       480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~-l~p~n~  523 (611)
T KOG1173|consen  480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA-LKPDNI  523 (611)
T ss_pred             HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-cCCccH
Confidence            999876 77899999999999999999999999999886 555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=2.8e-10  Score=101.97  Aligned_cols=291  Identities=16%  Similarity=0.106  Sum_probs=148.3

Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc---
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS---  145 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---  145 (403)
                      ...+...|++++|++.++... ................+.+.|+.++|..+|..+.+.++. +..-|..+..+..-.   
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence            344556666666666666544 223333334455666666667777777776666665521 333333333333111   


Q ss_pred             --CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          146 --RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS-DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       146 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                        .+.+....+|+++...+   |.......+.-.+.....+ ..+..++..+...|+|   .+|+.+-..|......+-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence              12344555666654431   3322222222222221122 2344455555666654   3444444444444444444


Q ss_pred             HHHHHHHHHc----C----------CCCchHHH--HHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHh
Q 015673          223 ERLWSEMEKK----G----------VDLDVAAY--NVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCK  284 (403)
Q Consensus       223 ~~~~~~~~~~----~----------~~~~~~~~--~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  284 (403)
                      .+++......    +          -.|+...|  ..+...+ ..|++++|.+++++..+.  .|+ +..|..-.+.+-+
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh  240 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence            4444443321    0          11222222  2223333 667777777777766665  343 4456666666667


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhcC
Q 015673          285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNT------V--KLLVEGLVKKK  356 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g  356 (403)
                      .|++.+|...++.....+ .-|...-+..+..+.+.|++++|.+++......+..|....      |  .....+|.+.|
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~  319 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG  319 (517)
T ss_pred             CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777766654 33555555556666677777777776666655443222111      1  33455666777


Q ss_pred             CHHHHHHHHHHHHH
Q 015673          357 KIKEAKGVIRTIKK  370 (403)
Q Consensus       357 ~~~~a~~~~~~~~~  370 (403)
                      ++..|.+-|..+.+
T Consensus       320 ~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  320 DYGLALKRFHAVLK  333 (517)
T ss_pred             hHHHHHHHHHHHHH
Confidence            77766666655543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.41  E-value=3e-09  Score=95.45  Aligned_cols=294  Identities=16%  Similarity=0.131  Sum_probs=199.8

Q ss_pred             HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc
Q 015673           30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ  109 (403)
Q Consensus        30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (403)
                      -....+...|++++|++.++.-...-   .+........+..+.+.|+.++|..++..+.. ..|.+...|..+..+..-
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I---~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPdn~~Yy~~L~~~~g~   84 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQI---LDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPDNYDYYRGLEEALGL   84 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHhh
Confidence            34567788999999999998866655   22445567789999999999999999999985 455667777777777632


Q ss_pred             c-----CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC-cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          110 A-----GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD-KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       110 ~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      .     .+.+...++|+.+.+.-  |...+...+.-.+.....+. .+..++..+..+ |+|+   +|+.+-..|.....
T Consensus        85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K  158 (517)
T PF12569_consen   85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEK  158 (517)
T ss_pred             hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhH
Confidence            2     35777788898887644  33333322222222212222 244455555555 6544   45555555655555


Q ss_pred             hHHHHHHHHHHHhC----C----------CCCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHh
Q 015673          184 SDKALELLNEMENK----G----------VEVTT--VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRIT  246 (403)
Q Consensus       184 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~  246 (403)
                      .+-..+++......    +          -+|+.  +++..+.+.|-..|++++|++.+++.++.  .|+ +..|..-..
T Consensus       159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar  236 (517)
T PF12569_consen  159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence            55555555554322    1          23444  34566678888999999999999999987  566 444555555


Q ss_pred             hh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHH
Q 015673          247 NT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT------F--RTWIYHL  317 (403)
Q Consensus       247 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~--~~l~~~~  317 (403)
                      .+ ..|++.+|.+.++.....+.. |...-+..+..+.+.|++++|..++..+...+..|-...      |  .....+|
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~  315 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY  315 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence            55 899999999999999887633 667777788888999999999999999887664332221      1  2345688


Q ss_pred             HccCChHHHHHHHHHHHhC
Q 015673          318 CGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~  336 (403)
                      .+.|++..|++.|..+.+.
T Consensus       316 ~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  316 LRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHHhhHHHHHHHHHHHHHH
Confidence            8999999888877665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.41  E-value=1.3e-09  Score=95.74  Aligned_cols=352  Identities=14%  Similarity=0.116  Sum_probs=224.4

Q ss_pred             CCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673           20 STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY   99 (403)
Q Consensus        20 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (403)
                      +.+.|...|+.++-......++++|++.|..+...+  |+ +...+.-+.-.-++.++++...+....+.+ ..+.....
T Consensus        70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLq-l~~~~ra~  145 (700)
T KOG1156|consen   70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQ-LRPSQRAS  145 (700)
T ss_pred             cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hhhhhHHH
Confidence            455667788888777788888899999998888877  43 556666666666777888877777776663 44455666


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCcHHHHHHHHH------HHHhcCCcCcHHHHHHHchhhCCCCCchHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELG-TPRSVISFNALLF------ACTRSRLYDKVPILFDEIPKKYNLSPDKISYG  172 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  172 (403)
                      |..++.++.-.|++..|..+++...+.. ..|+...+.....      ...+.|..++|.+.+..-..  .+.-....-.
T Consensus       146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e  223 (700)
T KOG1156|consen  146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEE  223 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhh
Confidence            7788888888899999998888887654 2456555544332      24556777777777766533  2211222234


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHH-HHHHHhcCCHHHHH-HHHHHHHHc------------------
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV-LNCLYKQGNAEEAE-RLWSEMEKK------------------  232 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~-~~~~~~~~~------------------  232 (403)
                      .-...+.+.+++++|..++..+...+  ||...|... ..++.+..+.-++. .+|....+.                  
T Consensus       224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e  301 (700)
T KOG1156|consen  224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE  301 (700)
T ss_pred             hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence            45667788899999999999998863  455555444 44443333333333 444443322                  


Q ss_pred             ----------------CCCCchHHHHHHHhhhcCCChHHHHHHHHHHH----H----CC----------CCCCh--hcHH
Q 015673          233 ----------------GVDLDVAAYNVRITNTYGGDPERLKELIDEMR----D----AG----------LKPDT--ISYN  276 (403)
Q Consensus       233 ----------------~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~----~----~~----------~~~~~--~~~~  276 (403)
                                      |++   ..+..+...+  .++.... +++++.    .    .|          -+|..  .++-
T Consensus       302 el~~~vdkyL~~~l~Kg~p---~vf~dl~SLy--k~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y  375 (700)
T KOG1156|consen  302 ELKEIVDKYLRPLLSKGVP---SVFKDLRSLY--KDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY  375 (700)
T ss_pred             hhHHHHHHHHHHHhhcCCC---chhhhhHHHH--hchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence                            111   1111111112  1111111 222221    1    11          03333  3445


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015673          277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT-TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK  355 (403)
Q Consensus       277 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  355 (403)
                      .++..+-..|+++.|..+++..+.+  .|+.. .|..-.+.+...|++++|..++++..+.+ .+|...-..-+.-..+.
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA  452 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA  452 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence            6778888999999999999999876  66643 56666688999999999999999998877 56665555667778889


Q ss_pred             CCHHHHHHHHHHHHHhCC------chhHHHHHHHHHHhC
Q 015673          356 KKIKEAKGVIRTIKKKFP------PNVLRAWKKVEEELG  388 (403)
Q Consensus       356 g~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~  388 (403)
                      ++.++|.++...+.+...      .+....|-.+..+-.
T Consensus       453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a  491 (700)
T KOG1156|consen  453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA  491 (700)
T ss_pred             cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence            999999999988865321      223346666554433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.39  E-value=5.3e-11  Score=107.82  Aligned_cols=251  Identities=14%  Similarity=0.129  Sum_probs=165.0

Q ss_pred             HHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 015673           47 IYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL  126 (403)
Q Consensus        47 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  126 (403)
                      .+-.+...|+.|  +..+|..+|..|+..|+++.|- +|.-|.....+.....++.++.+..+.++.+.+.         
T Consensus        12 fla~~e~~gi~P--nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   12 FLALHEISGILP--NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             HHHHHHHhcCCC--chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence            455566677656  5677888888888888888887 8888877777777788888888888888877765         


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCcCc---HHHHHHHchhhC---CC-----------------CCchHHHHHHHHHHHhcCC
Q 015673          127 GTPRSVISFNALLFACTRSRLYDK---VPILFDEIPKKY---NL-----------------SPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~---~~-----------------~~~~~~~~~l~~~~~~~~~  183 (403)
                        .|...+|..|..+|...||+..   +.+.+..+...+   |+                 -||..   ..+....-.|-
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl  154 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL  154 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence              3788888888888888887654   222111111110   11                 11111   12222233344


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE  262 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~  262 (403)
                      ++.+++++..+...... .  .+..+++-+...  +....++........-.|+..+|..++... ..|+.+.|..++.+
T Consensus       155 waqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e  229 (1088)
T KOG4318|consen  155 WAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE  229 (1088)
T ss_pred             HHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            45555555444322110 0  111123333222  223333333333322258889999988888 89999999999999


Q ss_pred             HHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673          263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN  322 (403)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  322 (403)
                      |.+.|++.+...|..|+-+   .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus       230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            9999988888877777766   78888888899999999999999999888888887665

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=9.5e-10  Score=95.17  Aligned_cols=277  Identities=16%  Similarity=0.069  Sum_probs=148.1

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                      .-.+.+...+++.+..++.+.+.. ..+.....+..-|.++...|+..+-..+=.++.+..+. ...+|-++.--|.-.|
T Consensus       249 ~~ad~~y~~c~f~~c~kit~~lle-~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~  326 (611)
T KOG1173|consen  249 EKADRLYYGCRFKECLKITEELLE-KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIG  326 (611)
T ss_pred             HHHHHHHHcChHHHHHHHhHHHHh-hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhc
Confidence            344444455555555555555542 23333333333333455555554444444444443322 3445555555555555


Q ss_pred             CcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673          147 LYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                      .+.+|.+.|.+..   .+.|. ...|-.....|.-.|..+.|+..+..+.+. ++-....+--+.--|.+.++.+-|.+.
T Consensus       327 k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F  402 (611)
T KOG1173|consen  327 KYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF  402 (611)
T ss_pred             CcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence            5555555555543   22222 234555555555555555555555554433 211222222233344455555555555


Q ss_pred             HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC----CC--CCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA----GL--KPDTISYNFLMTCYCKNEMMDEAKKVYEGL  298 (403)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  298 (403)
                      |.+..... +.|+...+-+-... ..+.+.+|..+|+.....    +-  ..-..+++.|..+|.+.+.+++|+..++..
T Consensus       403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            55554431 12222233222222 455555555555544311    00  013345778888888888889999888888


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673          299 EENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV  353 (403)
Q Consensus       299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (403)
                      +... +.+..++.++.-.|...|+++.|++.|.+.+  .+.|+..+-..++..+.
T Consensus       482 L~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  482 LLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence            7664 5677888888888888899999998888877  45677666665555443

>PF13041 PPR_2: PPR repeat family

Probab=99.38  E-value=1.7e-12  Score=77.47  Aligned_cols=50  Identities=34%  Similarity=0.755  Sum_probs=33.9

Q ss_pred             CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673          270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG  319 (403)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (403)
                      ||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56666666666666666666666666666666666666666666666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.38  E-value=1e-09  Score=93.20  Aligned_cols=151  Identities=13%  Similarity=0.005  Sum_probs=81.9

Q ss_pred             ccCCHHHHHHHHHHHHhCCC-CC--cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          109 QAGMFDHAMRTFDQMDELGT-PR--SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                      ..+..+.++.-+.++..... .|  ....|..+...+...|++++|...|++..+  ..+.+...|+.+...+...|+++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHH
Confidence            34555666666666654221 11  133455555566666666666666666654  22334556666666666666666


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR  264 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~  264 (403)
                      .|...|++..+.. +-+..+|..+..++...|++++|.+.|+...+.  .|+........... ..++.++|...|....
T Consensus       116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            6666666666542 223455566666666666666666666666654  23222111111112 4455666666664433

>PF13041 PPR_2: PPR repeat family

Probab=99.37  E-value=1.9e-12  Score=77.26  Aligned_cols=50  Identities=34%  Similarity=0.719  Sum_probs=36.8

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 015673          166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK  215 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  215 (403)
                      ||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            66777777777777777777777777777777777777777777777653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.35  E-value=3.1e-10  Score=100.52  Aligned_cols=242  Identities=16%  Similarity=0.136  Sum_probs=158.2

Q ss_pred             CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----
Q 015673           58 PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-------PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL----  126 (403)
Q Consensus        58 p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  126 (403)
                      ++....+...+...|...|+++.|+.+++...+.       ..+.-....+.+...|...+++.+|..+|+.+...    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3334455566888888888888888888877643       23333333455778888888888888888877542    


Q ss_pred             -CC-CC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC----CC-CCch-HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673          127 -GT-PR-SVISFNALLFACTRSRLYDKVPILFDEIPKKY----NL-SPDK-ISYGLLLKSHCDSGSSDKALELLNEMENK  197 (403)
Q Consensus       127 -~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (403)
                       |. .| -..+++.|..+|.+.|++++|..+++...+-.    +. .|.. ..++.++..|+..+++++|..++....+.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence             21 11 24456777777888888888777666654321    22 2333 23566777788888888888888776432


Q ss_pred             ---CCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673          198 ---GVEV----TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG----V---DLDVAAYNVRITNT-YGGDPERLKELIDE  262 (403)
Q Consensus       198 ---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~ll~~~-~~~~~~~a~~~~~~  262 (403)
                         -..+    -..+++.|...|...|++++|.+++++++...    .   .-....++.+-..+ +.+.+.+|.++|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence               1111    24578888899999999999998888876542    1   11133445555555 77777777777765


Q ss_pred             HHH----CCC-CC-ChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          263 MRD----AGL-KP-DTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       263 ~~~----~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      ...    .|. .| ...+|..|...|...|+++.|.++.+.+.
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            432    221 12 23567888888888888888888887765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=2e-09  Score=91.30  Aligned_cols=94  Identities=17%  Similarity=0.040  Sum_probs=42.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC  179 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (403)
                      |..+...+...|++++|...|++..+..+. +...|+.+...+...|++++|...|++..+.  .+-+..+|..+..++.
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            333444444445555555544444443322 3444444444444455555555444444421  1112334444444444


Q ss_pred             hcCChHHHHHHHHHHHh
Q 015673          180 DSGSSDKALELLNEMEN  196 (403)
Q Consensus       180 ~~~~~~~a~~~~~~~~~  196 (403)
                      ..|++++|.+.|+...+
T Consensus       144 ~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            44555555555544444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.3e-08  Score=86.35  Aligned_cols=350  Identities=14%  Similarity=0.131  Sum_probs=204.4

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ....+-++.....|++++|+....+++..+  |. +..++.+-+-++++.+++++|..+.+.-..  .......+..=+.
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAY   87 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAY   87 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHH
Confidence            445556778888999999999999999988  54 455566667788999999999966655331  1111222223455


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----------------------
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN----------------------  163 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------  163 (403)
                      +..+.+..++|+..++-...    .+..+...-...+.+.|++++|+++|+.+.+...                      
T Consensus        88 c~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~  163 (652)
T KOG2376|consen   88 CEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL  163 (652)
T ss_pred             HHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence            66688999999998883322    2334666666778889999999999988855321                      


Q ss_pred             -----CCCchHHHHHH---HHHHHhcCChHHHHHHHHHHHhCC-------CCC------chh-hHHHHHHHHHhcCCHHH
Q 015673          164 -----LSPDKISYGLL---LKSHCDSGSSDKALELLNEMENKG-------VEV------TTV-TYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       164 -----~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~~-~~~~ll~~~~~~~~~~~  221 (403)
                           ..| ..+|..+   .-.+...|++.+|+++++...+.+       -.-      ... .-.-+..++-..|+.++
T Consensus       164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence                 001 1133333   234557899999999998883211       100      111 12234556677899999


Q ss_pred             HHHHHHHHHHcCCCCchHH----HHHHHhhh-------------------------------------------------
Q 015673          222 AERLWSEMEKKGVDLDVAA----YNVRITNT-------------------------------------------------  248 (403)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~----~~~ll~~~-------------------------------------------------  248 (403)
                      |.+++..+++.... |...    -|-++..-                                                 
T Consensus       243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999888776432 2111    11111000                                                 


Q ss_pred             -------------------------------cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHH-
Q 015673          249 -------------------------------YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYE-  296 (403)
Q Consensus       249 -------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-  296 (403)
                                                     +...+..+.+++...-+....-.......++......|+++.|..++. 
T Consensus       322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                                           000111122222222221101112233445555667888888888888 


Q ss_pred             -------HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015673          297 -------GLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV------HKIPDFNTVKLLVEGLVKKKKIKEAKG  363 (403)
Q Consensus       297 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~  363 (403)
                             .+.+.+..|-  +...++..+.+.++.+.|..++...+.-      +-..-..++..++..-.+.|+.++|..
T Consensus       402 ~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  402 FLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             HhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence                   4444444443  4445556667766666666665554432      101112333444445556799999999


Q ss_pred             HHHHHHHhCCchhHHHHHHHHHHhCC
Q 015673          364 VIRTIKKKFPPNVLRAWKKVEEELGL  389 (403)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (403)
                      +++++.+..+++. .....++.+|..
T Consensus       480 ~leel~k~n~~d~-~~l~~lV~a~~~  504 (652)
T KOG2376|consen  480 LLEELVKFNPNDT-DLLVQLVTAYAR  504 (652)
T ss_pred             HHHHHHHhCCchH-HHHHHHHHHHHh
Confidence            9999998666664 456666655543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=6.8e-10  Score=88.58  Aligned_cols=332  Identities=15%  Similarity=0.083  Sum_probs=225.3

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH-
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC-  101 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-  101 (403)
                      .....+..++..+.+..++..|++++..-.++.  |. +......+..+|-...++..|.+.++++.. . .|...-|. 
T Consensus         8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-l-~P~~~qYrl   82 (459)
T KOG4340|consen    8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQ-L-HPELEQYRL   82 (459)
T ss_pred             CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-ChHHHHHHH
Confidence            344568899999999999999999999998888  43 556678899999999999999999999873 2 23333332 


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA--CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC  179 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (403)
                      --...+.+.+.+..|+++...|...   ++...-..-+.+  ....+++..+..++++....    -+..+.+...-...
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gClly  155 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLY  155 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheee
Confidence            2456677889999999999988752   232222222222  44578899999999888632    24445555555566


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-------------h--------
Q 015673          180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-------------V--------  238 (403)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~--------  238 (403)
                      +.|+++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++...++.++|+...             .        
T Consensus       156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~  234 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV  234 (459)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence            8999999999999988764333456676554 56688999999999999999987522             1        


Q ss_pred             -------HHHHHHHhhh-cCCChHHHHHHHHHHHHC-CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 015673          239 -------AAYNVRITNT-YGGDPERLKELIDEMRDA-GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT  309 (403)
Q Consensus       239 -------~~~~~ll~~~-~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  309 (403)
                             ..+|.-.... +.++++.|.+-+..|.-+ ....|++|...+.-.- -.+++....+-+.-+.+.+ +-...|
T Consensus       235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ET  312 (459)
T KOG4340|consen  235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPET  312 (459)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHH
Confidence                   1122222222 668888888888877533 1234666665554332 2345555666666666654 344578


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 015673          310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKI-PDFNTVKLLVEGLVK-KKKIKEAKGVIRTIKK  370 (403)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~  370 (403)
                      |..++-.||++.-++.|-.++.+-.....+ .+...|+ |++++.. .-.+++|.+-++.+.+
T Consensus       313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~  374 (459)
T KOG4340|consen  313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG  374 (459)
T ss_pred             HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            888888999999999998888653222111 2333333 4555554 4567888877777643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=5.8e-10  Score=98.83  Aligned_cols=246  Identities=19%  Similarity=0.140  Sum_probs=173.6

Q ss_pred             hcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCcHHH-HHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673           89 KNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-----G-TPRSVIS-FNALLFACTRSRLYDKVPILFDEIPKK  161 (403)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~  161 (403)
                      .....|....+...+...|...|+++.|..+++...+.     | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            33445555556677999999999999999999987663     2 1234433 344777899999999999999988643


Q ss_pred             C----C-CCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCch-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          162 Y----N-LSP-DKISYGLLLKSHCDSGSSDKALELLNEMENK-----GV-EVTT-VTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       162 ~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      .    | ..| -..+++.|...|.+.|++++|...++...+.     +. .|.. ..++.+...|...+++++|..++..
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            1    2 122 2456888888999999999998888876432     11 1222 3456677888999999999999987


Q ss_pred             HHHc---CCCCc----hHHHHHHHhhh-cCCChHHHHHHHHHHHHC----CCC--C-ChhcHHHHHHHHHhcCChHHHHH
Q 015673          229 MEKK---GVDLD----VAAYNVRITNT-YGGDPERLKELIDEMRDA----GLK--P-DTISYNFLMTCYCKNEMMDEAKK  293 (403)
Q Consensus       229 ~~~~---~~~~~----~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~  293 (403)
                      ..+.   -+.++    ..+++.+-..+ ..|++++|++++++....    +-.  + ....++.|...|.+.+...+|.+
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            6543   12222    34566666667 899999999999988643    111  1 13457788889999999999999


Q ss_pred             HHHHHH----HCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673          294 VYEGLE----ENG--CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV  334 (403)
Q Consensus       294 ~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (403)
                      +|.+..    ..|  .+-...+|..|...|...|+++.|.++.+.+.
T Consensus       431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            888744    222  12223577888888888888888888877665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.1e-08  Score=85.49  Aligned_cols=288  Identities=9%  Similarity=-0.013  Sum_probs=147.6

Q ss_pred             CChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 015673           39 FDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMR  118 (403)
Q Consensus        39 ~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  118 (403)
                      ++...|...+-.+.....-| .+.+....+...+...|+.++|+..|++... -.+-+........-.+.+.|+.+....
T Consensus       210 ~~hs~a~~t~l~le~~~~lr-~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLR-CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             cccchhhhHHHHHHhhccCC-ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChhhhhhHHHHHHHHHhccCHhhHHH
Confidence            34444444443333333212 2445555666666666666666666666542 122222222233333455566666555


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 015673          119 TFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG  198 (403)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  198 (403)
                      +...+....- -+...|..-+.......+++.|+.+-.+.++.  -+.+...|-.-...+...++++.|.-.|+..... 
T Consensus       288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-  363 (564)
T KOG1174|consen  288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQML-  363 (564)
T ss_pred             HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhc-
Confidence            5555544211 12333333344444555666666666655531  1223334444445556666666666666666554 


Q ss_pred             CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH-hhh--cCCChHHHHHHHHHHHHCCCCCC-hhc
Q 015673          199 VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI-TNT--YGGDPERLKELIDEMRDAGLKPD-TIS  274 (403)
Q Consensus       199 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~  274 (403)
                      -+-+...|..|+.+|...|.+.+|.-.-+...+. ...+..+.+.+- ..+  ....-++|.+++++-...  .|+ ...
T Consensus       364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A  440 (564)
T KOG1174|consen  364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA  440 (564)
T ss_pred             chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence            2335566666777777667666666555544432 122233333221 111  333345666666655543  333 223


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      .+.+...|...|..+.++.+++.....  .||....+.+.+.+...+.+++|++.|...+..+
T Consensus       441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            445555566666666666666665554  5666666666666666666666666666665443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.2e-08  Score=82.76  Aligned_cols=306  Identities=11%  Similarity=0.022  Sum_probs=200.6

Q ss_pred             CCcchHHHHHHHhhc-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673           76 KRFSDIETLIESHKN-DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL  154 (403)
Q Consensus        76 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  154 (403)
                      ++-..+...+-.+.. ...+.+......+..++...|+.++|+..|+.....++- +........-.+.+.|+++....+
T Consensus       210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L  288 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSAL  288 (564)
T ss_pred             cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHH
Confidence            444444444333322 344556666777888888888888888888887764321 222233333445567777777666


Q ss_pred             HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673          155 FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV  234 (403)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  234 (403)
                      ...+...  ..-+...|-.-+......+++..|+.+-++.++.+ +.+...+..-...+...|+.++|.=.|+..+... 
T Consensus       289 ~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-  364 (564)
T KOG1174|consen  289 MDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-  364 (564)
T ss_pred             HHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence            6666532  11233344444455556778888888888877753 2355556556667778888888888888877652 


Q ss_pred             CCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 015673          235 DLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLM-TCYC-KNEMMDEAKKVYEGLEENGCSPNA-TTF  310 (403)
Q Consensus       235 ~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-~~~  310 (403)
                      +.+...|.-++..| ..|.+.+|.-+-+..... +..+..+...+. ..|. .-.--++|.++++.....  .|+. ...
T Consensus       365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV  441 (564)
T KOG1174|consen  365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV  441 (564)
T ss_pred             hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence            24567788888888 778888877766655443 233444544331 2222 223346788888777665  4553 356


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCC
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLV  390 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  390 (403)
                      +.+...+...|...+++.++++.+.  ..||....+.|.+.+...+.+++|...|....+ ..|++..+...|-..-...
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-QDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCccchHHHHHHHHHHhcc
Confidence            6777888899999999999999875  368999999999999999999999999999987 5555555665555444443


Q ss_pred             CC
Q 015673          391 PA  392 (403)
Q Consensus       391 ~~  392 (403)
                      ++
T Consensus       519 ~~  520 (564)
T KOG1174|consen  519 DE  520 (564)
T ss_pred             CC
Confidence            33

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.33  E-value=1.5e-09  Score=83.51  Aligned_cols=198  Identities=12%  Similarity=0.036  Sum_probs=123.4

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      .-.+.-.+...|++..|.+-++++++.+  |. +..+|..+...|.+.|..+.|.+.|++... ..+.+..+.|.....+
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-l~p~~GdVLNNYG~FL  113 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PS-YYLAHLVRAHYYQKLGENDLADESYRKALS-LAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCCccchhhhhhHHH
Confidence            3344556667777777777777777766  32 455566666777777777777777777663 4455566667777777


Q ss_pred             hccCCHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGT-PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK  186 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (403)
                      |..|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.  .+-...+...+.....+.|++-.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence            777777777777777665321 112455666666666677777777777666542  22233445566666666677777


Q ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      |..+++.....+. ++..+.-..|+.-...|+.+.+.+.=..+.+.
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            7666666666544 56666666666666666666666555555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=8.7e-09  Score=87.84  Aligned_cols=82  Identities=11%  Similarity=0.152  Sum_probs=59.2

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHhhcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHH
Q 015673           66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQ-EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS-VISFNALLFACT  143 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~  143 (403)
                      .....-+.+.|.+++|++.|.....  ..|+ +.+|....-+|...|+|+++.+.-...++.+  |+ +.++..-..++-
T Consensus       119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE  194 (606)
T ss_pred             HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence            4455667899999999999999984  3344 6778889999999999999999888888744  43 334444444454


Q ss_pred             hcCCcCcH
Q 015673          144 RSRLYDKV  151 (403)
Q Consensus       144 ~~~~~~~a  151 (403)
                      ..|++++|
T Consensus       195 ~lg~~~ea  202 (606)
T KOG0547|consen  195 QLGKFDEA  202 (606)
T ss_pred             hhccHHHH
Confidence            45554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.32  E-value=1.7e-08  Score=88.85  Aligned_cols=302  Identities=12%  Similarity=-0.010  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPK-ITQE-PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF  140 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  140 (403)
                      ..|..+...+...|+.+.+...+........ ..+. .........+...|++++|.+.+++..+..+. +...+.. ..
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~   84 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL   84 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence            3344444445555555554444444332111 1111 11112233344556666666666666554322 3333331 11


Q ss_pred             HHHh----cCCcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 015673          141 ACTR----SRLYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK  215 (403)
Q Consensus       141 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  215 (403)
                      .+..    .+....+.+.+....   ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~  160 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            2222    233333444433311   12222 2333444556666666666666666666652 3344555666666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CchH--HHHHHHhhh-cCCChHHHHHHHHHHHHCCC-CCChhcH-H--HHHHHHHhcCC
Q 015673          216 QGNAEEAERLWSEMEKKGVD-LDVA--AYNVRITNT-YGGDPERLKELIDEMRDAGL-KPDTISY-N--FLMTCYCKNEM  287 (403)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~  287 (403)
                      .|++++|...+++....... ++..  .+..+...+ ..|++++|..++++...... .+..... +  .++.-+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            66666666666666554221 1211  122222333 66666666666666543211 0111111 1  22222233333


Q ss_pred             hHHHHHH--HHHH-HHCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhc
Q 015673          288 MDEAKKV--YEGL-EENGC-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI--------PDFNTVKLLVEGLVKK  355 (403)
Q Consensus       288 ~~~A~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~  355 (403)
                      ...+.++  +... ..... ............++...|+.++|..+++.+......        ...........++...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3322222  1111 11100 111122224555666777777777777766543211        1122223334455577


Q ss_pred             CCHHHHHHHHHHHHH
Q 015673          356 KKIKEAKGVIRTIKK  370 (403)
Q Consensus       356 g~~~~a~~~~~~~~~  370 (403)
                      |++++|.+.+.....
T Consensus       321 g~~~~A~~~L~~al~  335 (355)
T cd05804         321 GNYATALELLGPVRD  335 (355)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888877777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.32  E-value=3.1e-09  Score=81.82  Aligned_cols=208  Identities=12%  Similarity=0.030  Sum_probs=176.4

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                      .+...+.-.|...|+...|..-+++..+ ..|....+|..+...|.+.|+.+.|.+.|++..+..+. +....|.....+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~-~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALE-HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence            3445677789999999999999999985 56677778899999999999999999999999987764 788899999999


Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      |..|++++|...|++........--..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++..|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence            99999999999999998875555567789999999999999999999999999873 33566778889999999999999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHH
Q 015673          223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYN  276 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (403)
                      ...++.....+. ++.......+... ..|+.+.+.+.=..+...  -|...-|.
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q  244 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ  244 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence            999999988765 7877777777777 889999998888777765  55554443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=3.1e-09  Score=96.75  Aligned_cols=247  Identities=14%  Similarity=0.148  Sum_probs=164.0

Q ss_pred             CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH
Q 015673           19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP   98 (403)
Q Consensus        19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   98 (403)
                      .+..|+..+|.+++..|+..|+.+.|- +|..|.....  ......++.++......++.+.+.           .|...
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL--pv~e~vf~~lv~sh~~And~Enpk-----------ep~aD   84 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL--PVREGVFRGLVASHKEANDAENPK-----------EPLAD   84 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc--cccchhHHHHHhcccccccccCCC-----------CCchh
Confidence            467788999999999999999999988 9998887773  235556677777777777766554           57778


Q ss_pred             HHHHHHHHHhccCCHHH---HHHHHHHH----HhCCCCCcHHHH--------------HHHHHHHHhcCCcCcHHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDH---AMRTFDQM----DELGTPRSVISF--------------NALLFACTRSRLYDKVPILFDE  157 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~---A~~~~~~~----~~~~~~~~~~~~--------------~~ll~~~~~~~~~~~a~~~~~~  157 (403)
                      +|..|..+|.+.||...   +.+.+..+    ...|+.....-+              ...+......|.++.+++++..
T Consensus        85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~  164 (1088)
T KOG4318|consen   85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK  164 (1088)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999998654   33322222    122322111111              1122223334445555555544


Q ss_pred             chhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 015673          158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD  237 (403)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  237 (403)
                      +.......|..    .+++-+...  .....++........-.|++.+|..++.+-...|+.+.|..++.+|.+.|.+.+
T Consensus       165 ~Pvsa~~~p~~----vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir  238 (1088)
T KOG4318|consen  165 VPVSAWNAPFQ----VFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR  238 (1088)
T ss_pred             CCcccccchHH----HHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence            43221111111    124433322  223333433333321247899999999999999999999999999999998888


Q ss_pred             hHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673          238 VAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM  287 (403)
Q Consensus       238 ~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  287 (403)
                      ...|..++.+  .++...++.++..|.+.|+.|+..|+..-+..+...|.
T Consensus       239 ~HyFwpLl~g--~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  239 AHYFWPLLLG--INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             cccchhhhhc--CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            8877777766  67888888999999999999999998887777777554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.29  E-value=9.1e-08  Score=84.30  Aligned_cols=307  Identities=11%  Similarity=0.048  Sum_probs=191.8

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH-
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN-  102 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  102 (403)
                      ....+..+...+...|+++.+...+....+..................+...|++++|...+++.... .|.+...+.. 
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKLH   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHh
Confidence            34556667777777889999888888887766222112223334455667889999999999998753 4444444442 


Q ss_pred             --HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          103 --LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       103 --l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                        +.......+..+.+.+.+..... ..+........+...+...|++++|...+++..+  ..+.+...+..+...+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence              22222234556666666554211 1222334455666788999999999999999986  344556778889999999


Q ss_pred             cCChHHHHHHHHHHHhCCC-CCch--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHH-H--HHHhhh-cCCC
Q 015673          181 SGSSDKALELLNEMENKGV-EVTT--VTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-DLDVAAY-N--VRITNT-YGGD  252 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~-~~~~  252 (403)
                      .|++++|..++++...... .++.  ..|..+...+...|++++|..++++...... .+..... +  .++... ..|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            9999999999999877532 1222  3455788899999999999999999865432 1122111 2  222222 4454


Q ss_pred             hHHHHHH--HHHHHHCCCCCChhcHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHHcc
Q 015673          253 PERLKEL--IDEMRDAGLKPDTISYN--FLMTCYCKNEMMDEAKKVYEGLEENGCSP--N------ATTFRTWIYHLCGS  320 (403)
Q Consensus       253 ~~~a~~~--~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~  320 (403)
                      ...+.+.  +..............+.  ....++...|+.+.|..+++.+.......  .      .........++...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            4444333  22221111111112222  45667778999999999999987533220  1      11112223355688


Q ss_pred             CChHHHHHHHHHHH
Q 015673          321 GNFDKAYKVFKESV  334 (403)
Q Consensus       321 ~~~~~a~~~~~~~~  334 (403)
                      |+.++|.+.+....
T Consensus       321 g~~~~A~~~L~~al  334 (355)
T cd05804         321 GNYATALELLGPVR  334 (355)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.2e-08  Score=81.68  Aligned_cols=300  Identities=16%  Similarity=0.135  Sum_probs=155.6

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      +...+..+...|....++..|.+.|+++-...  |....+-+ .-.+.+-+.+.+.+|..+...+....... ......-
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl-Y~AQSLY~A~i~ADALrV~~~~~D~~~L~-~~~lqLq  118 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL-YQAQSLYKACIYADALRVAFLLLDNPALH-SRVLQLQ  118 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH-HHHHHHHHhcccHHHHHHHHHhcCCHHHH-HHHHHHH
Confidence            44556666666666777777777777776655  43232222 23455666677777777776665321111 1111111


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      .......+++..+..+.++....|   +..+.+.......+.|+++.|.+-|+...+-.|..|-. .|+..+ +..+.|+
T Consensus       119 aAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-AYniAL-aHy~~~q  193 (459)
T KOG4340|consen  119 AAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-AYNLAL-AHYSSRQ  193 (459)
T ss_pred             HHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-HHHHHH-HHHhhhh
Confidence            111234566666766666665322   33444444444566777777777777776665554433 344433 3345667


Q ss_pred             hHHHHHHHHHHHhCCCCC-------------c---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 015673          184 SDKALELLNEMENKGVEV-------------T---------------TVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-V  234 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~  234 (403)
                      ++.|++...++.++|++.             |               +..+|.-...+.+.|+++.|.+.+..|..+. .
T Consensus       194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~  273 (459)
T KOG4340|consen  194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE  273 (459)
T ss_pred             HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence            777777777777666431             1               0122223333456677777776666664321 2


Q ss_pred             CCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHH
Q 015673          235 DLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPNATTFRTW  313 (403)
Q Consensus       235 ~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l  313 (403)
                      ..|++|...+.-.-..+++....+-+.-+...+. .-..||..++-.|++..-++.|-.++.+-...-. -.+...|+ +
T Consensus       274 elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-L  351 (459)
T KOG4340|consen  274 ELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-L  351 (459)
T ss_pred             cCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-H
Confidence            3455554443322244555555555555555432 2345666666677777777777666654221110 12233333 2


Q ss_pred             HHHHH-ccCChHHHHHHHHHHH
Q 015673          314 IYHLC-GSGNFDKAYKVFKESV  334 (403)
Q Consensus       314 ~~~~~-~~~~~~~a~~~~~~~~  334 (403)
                      +.++. ..-..++|.+-+..+.
T Consensus       352 LdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  352 LDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHH
Confidence            33332 2344556655555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.26  E-value=9.7e-08  Score=78.06  Aligned_cols=304  Identities=14%  Similarity=0.055  Sum_probs=204.7

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH-HHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP-YLC  101 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~  101 (403)
                      ....-...+...+...|++..|+..|..+++.+  |. +-.++..-...|...|+-..|+.-+..+..  ..|+-. .-.
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi  110 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--ch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH
Confidence            344455667888999999999999999999887  54 334444557778888999999888888874  223221 122


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCc--HHH------------HHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRS--VIS------------FNALLFACTRSRLYDKVPILFDEIPKKYNLSPD  167 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  167 (403)
                      .-...+.+.|.++.|..-|+.+++......  ...            ....+..+.-.|+...|+.....+++  -.+-|
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wd  188 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWD  188 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcch
Confidence            345667889999999999999987653211  111            12233445667888888888888876  44557


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----HH
Q 015673          168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY----NV  243 (403)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~  243 (403)
                      ...|..-..+|...|++..|+.-++...+... -+..++.-+-..+...|+.+.++...++.++.  .||....    ..
T Consensus       189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk  265 (504)
T KOG0624|consen  189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK  265 (504)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence            77788888888888888888877777666533 35556666677788888888888888888875  4553221    11


Q ss_pred             H------Hhh----hcCCChHHHHHHHHHHHHCCCCCChh---cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015673          244 R------ITN----TYGGDPERLKELIDEMRDAGLKPDTI---SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF  310 (403)
Q Consensus       244 l------l~~----~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (403)
                      +      +..    ...+++.++.+-.+...+........   .+..+-.++...+++.+|++...++++.. +.|..++
T Consensus       266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l  344 (504)
T KOG0624|consen  266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHH
Confidence            1      111    14566677777777766653221122   23344556667777888888887777653 3346677


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      .--..+|.-...++.|+.-|+...+.+
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            777777777778888888888777654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.23  E-value=2.5e-07  Score=81.80  Aligned_cols=193  Identities=11%  Similarity=0.208  Sum_probs=95.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch---HHHHHHHhhh-cCC
Q 015673          182 GSSDKALELLNEMENKGVEVT------TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV---AAYNVRITNT-YGG  251 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~-~~~  251 (403)
                      |+..+-...+.++.+. +.|.      ...|..+...|-..|+.+.|..+|++..+...+--.   ..|..-...- ++.
T Consensus       361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            4444455555555443 2221      234666777777888888888888887765432211   1121111222 667


Q ss_pred             ChHHHHHHHHHHHHCCCC----------C-------ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673          252 DPERLKELIDEMRDAGLK----------P-------DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI  314 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  314 (403)
                      +++.|.++++.....--.          |       +...|...++.--..|-++....+|+.+++..+. ++.......
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyA  518 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYA  518 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            777777777665432100          0       1223444444444566666677777766655422 222222222


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCchh
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHKIPDF-NTVKLLVEGLVK---KKKIKEAKGVIRTIKKKFPPNV  376 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~  376 (403)
                      ..+-.+.-++++.+++++-+.....|+. ..|+..+.-+.+   .-+.+.|..+|++..+.-||..
T Consensus       519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~  584 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH  584 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence            2333444455555555554443323332 344444433333   2235556666666665555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=8.7e-08  Score=78.67  Aligned_cols=170  Identities=10%  Similarity=-0.013  Sum_probs=105.0

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (403)
                      +..+....++..|+.+++.....+-.-  ...+-..+..++.+.|++++|...++.+.. ...++...+..|.-++.-.|
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLG  105 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHH
Confidence            667778889999999999887655222  223334578888999999999999999885 44455666777887888889


Q ss_pred             CHHHHHHHHHHHHhCCCC-----------CcH--------------HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC
Q 015673          112 MFDHAMRTFDQMDELGTP-----------RSV--------------ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP  166 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~-----------~~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  166 (403)
                      .+.+|..+-....+....           -|.              ..-.+|.......-.+++|+++|.++...   .|
T Consensus       106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~  182 (557)
T KOG3785|consen  106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP  182 (557)
T ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence            999998776655321100           000              01111222222223467788888777642   34


Q ss_pred             chHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 015673          167 DKISYGL-LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTT  208 (403)
Q Consensus       167 ~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (403)
                      +....|. +.-+|.+..-++-+.+++.-..+. ++.++...|.
T Consensus       183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NL  224 (557)
T KOG3785|consen  183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNL  224 (557)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHH
Confidence            4444443 334566777777777777666554 3333333333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=1.3e-08  Score=83.31  Aligned_cols=327  Identities=10%  Similarity=0.104  Sum_probs=167.4

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC-----------CCH---
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI-----------TQE---   97 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~---   97 (403)
                      ...+...|++++|+..|..+....   ..+...+..+.-++.-.|.+.+|..+-++..+.+..           .+.   
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            445567899999999999988755   224444555666666667777777776665421100           000   


Q ss_pred             -----------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH-HHHhcCCcCcHHHHHHHchhhCCCC
Q 015673           98 -----------PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF-ACTRSRLYDKVPILFDEIPKKYNLS  165 (403)
Q Consensus        98 -----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~  165 (403)
                                 .--.+|.......-.+++|+++|.++...+  |.-...|.-+. +|.+..-++-+.++++...++  ++
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~p  216 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FP  216 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CC
Confidence                       001123333333345788889988887643  45555555444 355666666677777666653  22


Q ss_pred             CchHHHHHHHHHHHhc--CCh---------------------------------HHHHHHHHHHHhCCCCCchhhHHHHH
Q 015673          166 PDKISYGLLLKSHCDS--GSS---------------------------------DKALELLNEMENKGVEVTTVTYTTVL  210 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~--~~~---------------------------------~~a~~~~~~~~~~~~~~~~~~~~~ll  210 (403)
                      .+....|.......+.  |+.                                 +.|++++-.+.+.    =+..-..++
T Consensus       217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~  292 (557)
T KOG3785|consen  217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLI  292 (557)
T ss_pred             CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhhe
Confidence            2333333322211111  111                                 1111111111110    012223344


Q ss_pred             HHHHhcCCHHHHHHHHHHH--------------------------------------HHcCCCCchHHHHHHHhh-h-cC
Q 015673          211 NCLYKQGNAEEAERLWSEM--------------------------------------EKKGVDLDVAAYNVRITN-T-YG  250 (403)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~~~~ll~~-~-~~  250 (403)
                      --|.+.+++.+|..+.+++                                      -+++..-|...-..-+.. + ..
T Consensus       293 iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~  372 (557)
T KOG3785|consen  293 IYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS  372 (557)
T ss_pred             eeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence            4455556666665555443                                      222222111111111111 1 23


Q ss_pred             CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCChHHHHHH
Q 015673          251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRT-WIYHLCGSGNFDKAYKV  329 (403)
Q Consensus       251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~  329 (403)
                      .++++.+..+..+...=...|...+ .+.++++..|.+.+|.++|-.+....++ |..+|.+ +.++|.+++..+.|+++
T Consensus       373 ~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~  450 (557)
T KOG3785|consen  373 FQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM  450 (557)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence            3444444444444433222233333 3677777888888888888766644433 4455544 45677888888888777


Q ss_pred             HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          330 FKESVMVHKIPDF-NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       330 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      +-++   +.+.+. ..+..+..-|.+.+.+=-|-+.|+.+.. ..|+
T Consensus       451 ~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~  493 (557)
T KOG3785|consen  451 MLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPT  493 (557)
T ss_pred             HHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCC
Confidence            6543   222222 3334455667777877777777777755 3343

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.9e-07  Score=80.81  Aligned_cols=211  Identities=13%  Similarity=0.049  Sum_probs=147.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh----
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT----  246 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~----  246 (403)
                      ...+.++..+..+++.|.+-+....+..  .+..-++....+|...|.+..+...-....+.|.. ...-|+.+-.    
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            3456677777788888888888887764  46666677777888888888777776666655422 2222333222    


Q ss_pred             ---hh-cCCChHHHHHHHHHHHHCCCCCChhcH-------------------------HHHHHHHHhcCChHHHHHHHHH
Q 015673          247 ---NT-YGGDPERLKELIDEMRDAGLKPDTISY-------------------------NFLMTCYCKNEMMDEAKKVYEG  297 (403)
Q Consensus       247 ---~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~A~~~~~~  297 (403)
                         ++ ..++++.+...|++.......|+...=                         ..-...+.+.|++..|...|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence               22 457778888888776554334332210                         1113456788999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673          298 LEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVL  377 (403)
Q Consensus       298 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  377 (403)
                      +++.. +-|...|....-+|.+.|.+..|++-.+..++.+ ++....|..-..++....++++|.+.|++..+ ..|+..
T Consensus       384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale-~dp~~~  460 (539)
T KOG0548|consen  384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE-LDPSNA  460 (539)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhH
Confidence            99886 6678899999999999999999999988888875 55666777677778788899999999999987 445544


Q ss_pred             HHHHHHHHHh
Q 015673          378 RAWKKVEEEL  387 (403)
Q Consensus       378 ~~~~~l~~~~  387 (403)
                      .....+.++.
T Consensus       461 e~~~~~~rc~  470 (539)
T KOG0548|consen  461 EAIDGYRRCV  470 (539)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.21  E-value=2.3e-07  Score=82.09  Aligned_cols=334  Identities=16%  Similarity=0.108  Sum_probs=168.6

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (403)
                      +-.|...|+.++|.+........+   ..+...|+.+.-.+....++++|+..|.... ...+.+...+..+.-.-++.+
T Consensus        48 GL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   48 GLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             cchhhcccchHHHHHHHHHHhccC---cccchhHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHH
Confidence            334444455555555555444433   1233444444444444455555555555544 233344444444444444445


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH------HHHHhcCChH
Q 015673          112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL------KSHCDSGSSD  185 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~  185 (403)
                      +++.....-....+..+ .....|..+..++.-.|++..|..+++...+...-.|+...+....      ....+.|.++
T Consensus       124 d~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q  202 (700)
T KOG1156|consen  124 DYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ  202 (700)
T ss_pred             hhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence            55554444444444221 1233445555555555666666666666655432234444443322      2233455555


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh---cCCChHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT---YGGDPERLKELIDE  262 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~a~~~~~~  262 (403)
                      .|.+.+..-... +.-....-..-...+.+.+++++|..++..++..  .||...|...+..+   ..+..+....+|..
T Consensus       203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~  279 (700)
T KOG1156|consen  203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI  279 (700)
T ss_pred             HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            555555544332 2112222233455566777777777777777775  56666665554443   12233333355555


Q ss_pred             HHHC---CCCCCh--------hcHHHHHHHHH----hcC-------------ChHHHHHHHHHHH--------HCC----
Q 015673          263 MRDA---GLKPDT--------ISYNFLMTCYC----KNE-------------MMDEAKKVYEGLE--------ENG----  302 (403)
Q Consensus       263 ~~~~---~~~~~~--------~~~~~l~~~~~----~~~-------------~~~~A~~~~~~~~--------~~~----  302 (403)
                      ..+.   ...|-.        .-+...++-|.    +.|             +..++- +++++.        ..|    
T Consensus       280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~  358 (700)
T KOG1156|consen  280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNF  358 (700)
T ss_pred             HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCc
Confidence            5432   000100        00111111111    111             111111 222221        111    


Q ss_pred             ------CCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          303 ------CSPNATT--FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       303 ------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                            -+|....  +-.++..+-+.|+++.|..+++..+..- |.-++.|..-.+.+...|+.++|..++++..+-..+
T Consensus       359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a  437 (700)
T KOG1156|consen  359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA  437 (700)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence                  1344443  3456778888999999999999988643 333466767789999999999999999999875555


Q ss_pred             h
Q 015673          375 N  375 (403)
Q Consensus       375 ~  375 (403)
                      |
T Consensus       438 D  438 (700)
T KOG1156|consen  438 D  438 (700)
T ss_pred             h
Confidence            5

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.20  E-value=2.9e-07  Score=83.12  Aligned_cols=361  Identities=12%  Similarity=0.037  Sum_probs=230.1

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCC-CCCHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPK-ITQEPYLCN  102 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~  102 (403)
                      ++..|..+.-++...|++..+.+.|++....-   ......|..+...+...|.-..|..+++....... +++...+..
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~---~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS---FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            45678888888899999999999999998766   34567788889999999999999999988764332 333333433


Q ss_pred             HHHHH-hccCCHHHHHHHHHHHHhC--CC--CCcHHHHHHHHHHHHhc-----------CCcCcHHHHHHHchhhCCCCC
Q 015673          103 LIRSY-GQAGMFDHAMRTFDQMDEL--GT--PRSVISFNALLFACTRS-----------RLYDKVPILFDEIPKKYNLSP  166 (403)
Q Consensus       103 l~~~~-~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~  166 (403)
                      ....| -+.+..++++..-.++.+.  +.  ......|..+.-+|...           ....++++.+++..+.....|
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp  478 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP  478 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            33333 3457777877777766551  11  12334444444444332           123467788888876544555


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---------
Q 015673          167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK-GVDL---------  236 (403)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---------  236 (403)
                      +...|-  .--|+..++++.|.+...+..+.+-..+...|..+..++...+++.+|+.+.+..... |...         
T Consensus       479 ~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  479 LVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI  556 (799)
T ss_pred             hHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence            444433  3346677899999999999998866678899999999999999999999998877653 1100         


Q ss_pred             ---------chHHHHHHHhhhc------------------------CCChHHHHHHHHHH----H----HCC--------
Q 015673          237 ---------DVAAYNVRITNTY------------------------GGDPERLKELIDEM----R----DAG--------  267 (403)
Q Consensus       237 ---------~~~~~~~ll~~~~------------------------~~~~~~a~~~~~~~----~----~~~--------  267 (403)
                               ...|...++....                        .++..++.+....+    .    ..|        
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s  636 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS  636 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence                     0011111111110                        00111111111110    0    000        


Q ss_pred             -CCCCh--------hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673          268 -LKPDT--------ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK  338 (403)
Q Consensus       268 -~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (403)
                       +.|+.        ..|......+.+.+..++|...+.+..+.. +.....|......+...|...+|.+.|......+ 
T Consensus       637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-  714 (799)
T KOG4162|consen  637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-  714 (799)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence             01111        123344556667777788877777766553 3445566666677778888888888888877665 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673          339 IPDFNTVKLLVEGLVKKKKIKEAKG--VIRTIKKKFPPNVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  392 (403)
                      |.++....++..++.+.|+..-|..  ++..+.+ ..|....+|..+......-|+
T Consensus       715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-~dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR-LDPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccc
Confidence            5566777888888888888777777  8888876 666667788887776655554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.20  E-value=5.6e-07  Score=79.71  Aligned_cols=213  Identities=12%  Similarity=0.089  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVT---TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL----------  236 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------  236 (403)
                      .|..+...|-..|+++.|..+|++..+...+--   ..+|......-.++.+++.|+++.+......-.|          
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            467778889999999999999999987654322   3456666666678888999999888765431111          


Q ss_pred             -------chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 015673          237 -------DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT  308 (403)
Q Consensus       237 -------~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  308 (403)
                             +...|...+... ..|-++....+++.+.+..+- ++.........+-...-++++.++|++-+..-..|+..
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~  547 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY  547 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence                   122333334434 678889999999999877543 33322223334446677899999998876654355543


Q ss_pred             -HHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCch-hHHHHH
Q 015673          309 -TFRTWIYHLCG---SGNFDKAYKVFKESVMVHKIPDFNT--VKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN-VLRAWK  381 (403)
Q Consensus       309 -~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~  381 (403)
                       .|+..+..+.+   .-..+.|..+|++.++ +.+|...-  |......-.+-|....|+.++++.....++. ....|+
T Consensus       548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myn  626 (835)
T KOG2047|consen  548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYN  626 (835)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence             77777776655   3468999999999998 65665432  2222333345688999999999987765544 344565


Q ss_pred             HHH
Q 015673          382 KVE  384 (403)
Q Consensus       382 ~l~  384 (403)
                      -.+
T Consensus       627 i~I  629 (835)
T KOG2047|consen  627 IYI  629 (835)
T ss_pred             HHH
Confidence            444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.19  E-value=2.8e-09  Score=89.13  Aligned_cols=250  Identities=15%  Similarity=0.099  Sum_probs=129.9

Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                      ++-+.-.|++..++.-.+ ..............-+.+++...|+++.++   ..+.... .|.......+...+...++-
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence            444555677777775555 322111112223344667777777766543   3333322 45666655555444433444


Q ss_pred             CcHHHHHHHchhhCCCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLS-PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  227 (403)
                      +.++.-+++.... ... .+..........+...|++++|++++...      .+.......+.+|.+.++++.|.+.++
T Consensus        83 e~~l~~l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   83 ESALEELKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             HCHHHHHHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4555555444333 222 23333333335566677788777777542      245556667777777888888888777


Q ss_pred             HHHHcCCCCchHHHHHHHhhh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          228 EMEKKGVDLDVAAYNVRITNT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       228 ~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      .|.+.  ..|....+ +..++     ..+.+..|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+
T Consensus       156 ~~~~~--~eD~~l~q-La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  156 NMQQI--DEDSILTQ-LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             HHHCC--SCCHHHHH-HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             HHHhc--CCcHHHHH-HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            77664  23333222 22222     123466666666666543 34555666666666666666666666666655443


Q ss_pred             CCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHh
Q 015673          303 CSPNATTFRTWIYHLCGSGNF-DKAYKVFKESVM  335 (403)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~  335 (403)
                       +-++.+...++.+....|+. +.+.+++.++..
T Consensus       232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence             33445555555555555555 445555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.19  E-value=2e-09  Score=89.99  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 015673          288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVIR  366 (403)
Q Consensus       288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~  366 (403)
                      +.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+ +-++.++..++.+....|+. +.+.+++.
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            44444444444332 23344444444444444444444444444444333 23334444444444444443 33444444


Q ss_pred             HHHH
Q 015673          367 TIKK  370 (403)
Q Consensus       367 ~~~~  370 (403)
                      ++++
T Consensus       261 qL~~  264 (290)
T PF04733_consen  261 QLKQ  264 (290)
T ss_dssp             HCHH
T ss_pred             HHHH
Confidence            4443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=2e-08  Score=87.46  Aligned_cols=254  Identities=14%  Similarity=0.039  Sum_probs=139.6

Q ss_pred             HHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC
Q 015673           70 RRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD  149 (403)
Q Consensus        70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  149 (403)
                      ..+.+.|++.+|.-.|+.... ..|.+...|..|.......++-..|+..+.+..+.++. +..+.-.|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVk-qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVK-QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHh-hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            334455555555555555542 34444555555555555555555555555555554433 4445555555555555555


Q ss_pred             cHHHHHHHchhhC-----CCC--CchHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673          150 KVPILFDEIPKKY-----NLS--PDKISYGLLLKSHCDSGSSDKALELLNEM-ENKGVEVTTVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       150 ~a~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~  221 (403)
                      .|+..++..+...     ...  ++...-..  ..+.....+....++|-++ .+.+..+|..+...|.-.|...|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            5555555543321     000  00000000  1112222233334444333 344444667777777777777778888


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          222 AERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      |...|+..+... +.|...||.+=..+ ...+.++|+..|.+.++.  +|+ +.+...|..+|...|.+++|...|-..+
T Consensus       449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            888887777653 23556677766666 666777788888777765  555 2344446777778888888877776644


Q ss_pred             H---C------CCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015673          300 E---N------GCSPNATTFRTWIYHLCGSGNFDKAYKVF  330 (403)
Q Consensus       300 ~---~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  330 (403)
                      .   .      +..++..+|..|=.++...++.|-+....
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            2   1      11234556776666677777766555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=1.2e-06  Score=79.25  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=98.7

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..+..+++...+.+..... +-....|......+...|.+++|.+.|......+ +-+.....++..++...|+..-|..
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             hcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHH
Confidence            6677777777777766542 3345567767778888999999999999988764 3456688899999999998888877


Q ss_pred             --HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          329 --VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       329 --~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                        ++.++.+.+ +.++..|..+...+.+.|+.+.|.+.|....+-
T Consensus       740 ~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  740 RSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence              999999888 788999999999999999999999999998764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.01  E-value=3.5e-06  Score=84.01  Aligned_cols=339  Identities=11%  Similarity=-0.007  Sum_probs=199.7

Q ss_pred             hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC------CC--HHHHHHHHH
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI------TQ--EPYLCNLIR  105 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~  105 (403)
                      .+...|+++.+...++.+....  ...+..........+...|+++++..++.........      +.  ......+..
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~--~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~  460 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEV--LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ  460 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHH--HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence            3444556666555555542211  0111122233445556778888888888776432111      11  111222445


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC--CC--chHHHHHHHHH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSV----ISFNALLFACTRSRLYDKVPILFDEIPKKYNL--SP--DKISYGLLLKS  177 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~  177 (403)
                      .+...|++++|...++.....-...+.    ...+.+...+...|++++|...+.+......-  .+  ....+..+...
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            566789999999999887653211121    23455566677889999998888877542111  11  12345566777


Q ss_pred             HHhcCChHHHHHHHHHHHhC----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCc--hHHHHHHHh
Q 015673          178 HCDSGSSDKALELLNEMENK----GVE--V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG--VDLD--VAAYNVRIT  246 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~ll~  246 (403)
                      +...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+.  ...+..+..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            88899999999888876542    211  1 22334455666777899999998888775531  1122  112222222


Q ss_pred             hh-cCCChHHHHHHHHHHHHCCCCCC-hhcH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 015673          247 NT-YGGDPERLKELIDEMRDAGLKPD-TISY-----NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA---TTFRTWIYH  316 (403)
Q Consensus       247 ~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~  316 (403)
                      .. ..|+++.|...+........... ...+     ...+..+...|+.+.|..++............   ..+..+..+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence            23 78999999988888754211111 1111     11224445678888888887765532211111   113456677


Q ss_pred             HHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          317 LCGSGNFDKAYKVFKESVMV----HKIP-DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      +...|+.++|...+++....    +... ...+...+..++.+.|+.++|...+.+..+...+
T Consensus       701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            88899999999999887654    2222 2345666778899999999999999999875433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.98  E-value=5.7e-06  Score=68.01  Aligned_cols=277  Identities=14%  Similarity=0.019  Sum_probs=202.9

Q ss_pred             CCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC
Q 015673           16 AAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT   95 (403)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   95 (403)
                      ++..+.|.+-..+......|...|+..-|+.=+++.++..  |+ ...+-..-...+.++|.+++|..-|+.+.......
T Consensus        63 aAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pD-F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen   63 AAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PD-FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             HHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--cc-HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            3444555555667777888999999999999999999887  53 22222344667889999999999999998543322


Q ss_pred             CHH--------------HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673           96 QEP--------------YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK  161 (403)
Q Consensus        96 ~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  161 (403)
                      ...              .....+..+.-.|+...|+.....+++..+- |...+..-..+|...|+...|+.-++...+ 
T Consensus       140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~ask-  217 (504)
T KOG0624|consen  140 GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASK-  217 (504)
T ss_pred             chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence            111              1223445566789999999999999997654 888888889999999999999887777754 


Q ss_pred             CCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHH----HH---------HHHHHhcCCHHHHHHHHHH
Q 015673          162 YNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYT----TV---------LNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l---------l~~~~~~~~~~~a~~~~~~  228 (403)
                       -...+..++.-+-..+...|+.+.++..+++..+.  .||...+.    .+         +......++|.+++...+.
T Consensus       218 -Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~  294 (504)
T KOG0624|consen  218 -LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEK  294 (504)
T ss_pred             -ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence             22345667777888888999999999999998874  34533221    11         2233456788888888888


Q ss_pred             HHHcCCCCchHHHHHH--Hhhh--cCCChHHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          229 MEKKGVDLDVAAYNVR--ITNT--YGGDPERLKELIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~l--l~~~--~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      ..+.........++..  +..|  ..+++.+|++.-.+....  .| |..++.--..+|.-..+++.|+.-|+...+.+
T Consensus       295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            8877544344444432  2333  678999999999998875  44 47788888899999999999999999998864

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.4e-06  Score=75.75  Aligned_cols=322  Identities=13%  Similarity=0.055  Sum_probs=211.6

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      +|++...|.....++++.|++++|++=-.+.++.+  |. +...|.....++...|++++|+.-|.+-.. ..+.+...+
T Consensus        32 ~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~-w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~-~d~~n~~L~  107 (539)
T KOG0548|consen   32 SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PD-WAKGYSRKGAALFGLGDYEEAILAYSEGLE-KDPSNKQLK  107 (539)
T ss_pred             CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--Cc-hhhHHHHhHHHHHhcccHHHHHHHHHHHhh-cCCchHHHH
Confidence            45578888888888999999999988877777777  43 667788888888888999999988888763 444555555


Q ss_pred             HHHHHHHhccCC---------------------------------------------------HHHHHHHHHHHH-----
Q 015673          101 CNLIRSYGQAGM---------------------------------------------------FDHAMRTFDQMD-----  124 (403)
Q Consensus       101 ~~l~~~~~~~~~---------------------------------------------------~~~A~~~~~~~~-----  124 (403)
                      ..+..++.....                                                   +..|.-.+....     
T Consensus       108 ~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~  187 (539)
T KOG0548|consen  108 TGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFY  187 (539)
T ss_pred             HhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccc
Confidence            555555511100                                                   000000000000     


Q ss_pred             hC-------CCCC---------c-------------HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673          125 EL-------GTPR---------S-------------VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL  175 (403)
Q Consensus       125 ~~-------~~~~---------~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  175 (403)
                      ..       +..|         .             ..-...+.++..+..++..+++.+....+.   .-+..-++...
T Consensus       188 ~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~a  264 (539)
T KOG0548|consen  188 ASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIA  264 (539)
T ss_pred             ccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHH
Confidence            00       0001         0             011234555555566667777777776643   23555567777


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH-------
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTT-------VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY-------  241 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------  241 (403)
                      .+|...|.+..+...-+...+.|.. ...-|+.       +..+|.+.++++.++..|.+.......|+...-       
T Consensus       265 A~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~  343 (539)
T KOG0548|consen  265 AVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKA  343 (539)
T ss_pred             HHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence            8888888888887777777665542 2222322       344666778899999999887665444442211       


Q ss_pred             -------------------HHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          242 -------------------NVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       242 -------------------~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                                         ......+..|++..|...|.+++.+. +-|...|....-+|.+.|.+..|+.-.+..++.+
T Consensus       344 ~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  344 LKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence                               11122237799999999999999986 5578899999999999999999999988888774


Q ss_pred             CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673          303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV  353 (403)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (403)
                       ++....|..-..++....++++|.+.|++.++.+ +.+......+.++..
T Consensus       423 -p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  423 -PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE  471 (539)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence             4445566666677778889999999999988766 333444444444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.96  E-value=3.2e-07  Score=72.61  Aligned_cols=162  Identities=11%  Similarity=0.128  Sum_probs=122.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673          210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM  288 (403)
Q Consensus       210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  288 (403)
                      +..|...|+++.+....+.+..    |.        ..+ ..++.+++...++...+.+ +.|...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            4467788888776544432211    11        011 2456677777777777664 55788899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          289 DEAKKVYEGLEENGCSPNATTFRTWIYHL-CGSGN--FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       289 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      ++|...|++..+.. +.+...+..+..++ ...|+  .++|.+++++.++.+ +.+..++..+...+.+.|++++|+..|
T Consensus        90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999875 45777888888764 67777  599999999999877 667889999999999999999999999


Q ss_pred             HHHHHhCCchhHHHHHHHHHHhC
Q 015673          366 RTIKKKFPPNVLRAWKKVEEELG  388 (403)
Q Consensus       366 ~~~~~~~~~~~~~~~~~l~~~~~  388 (403)
                      +++.+..+|+..  ...+++...
T Consensus       168 ~~aL~l~~~~~~--r~~~i~~i~  188 (198)
T PRK10370        168 QKVLDLNSPRVN--RTQLVESIN  188 (198)
T ss_pred             HHHHhhCCCCcc--HHHHHHHHH
Confidence            999998888764  234444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=2.5e-07  Score=80.91  Aligned_cols=255  Identities=12%  Similarity=0.065  Sum_probs=184.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      -..-+.+.|+..+|.-.|+..++.++. +..+|..|...-..+++-..|+..+.+..+  --+-|....-.|.-.|...|
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhh
Confidence            344466899999999999999988765 899999999999999999999999999975  33345667778888899999


Q ss_pred             ChHHHHHHHHHHHhCCCC--------CchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCchHHHHHHHhhh-cCCC
Q 015673          183 SSDKALELLNEMENKGVE--------VTTVTYTTVLNCLYKQGNAEEAERLWSEME-KKGVDLDVAAYNVRITNT-YGGD  252 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~-~~~~  252 (403)
                      .-..|++.|+.-+....+        ++...-..  .............++|-++. ..+..+|......|=..| ..|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence            999999999887554211        00000000  11222233445555555554 444334555555544445 8899


Q ss_pred             hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHH
Q 015673          253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA-TTFRTWIYHLCGSGNFDKAYKVFK  331 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~  331 (403)
                      +++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++.  +|+. .....|.-+|...|.+++|.+.|=
T Consensus       446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999999999998863 336789999999999999999999999999987  6664 466678889999999999999887


Q ss_pred             HHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          332 ESVMVHK---------IPDFNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       332 ~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      .++...-         .++..+|..|=.++.-.++.|-+.++.
T Consensus       523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            7654311         134567777777787788877565544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.95  E-value=1e-07  Score=78.60  Aligned_cols=192  Identities=11%  Similarity=-0.006  Sum_probs=132.0

Q ss_pred             CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC
Q 015673           19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ   96 (403)
Q Consensus        19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   96 (403)
                      +..+.....+...+..+...|++++|+..|+.+....  |..  ...++..+..++...|++++|...++++........
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            3444556677888889999999999999999998887  432  234567788999999999999999999875332221


Q ss_pred             H--HHHHHHHHHHhcc--------CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC
Q 015673           97 E--PYLCNLIRSYGQA--------GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP  166 (403)
Q Consensus        97 ~--~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  166 (403)
                      .  ..+..+..++.+.        |++++|.+.|+.+....+. +...+..+.....          ..... .      
T Consensus       105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----------~~~~~-~------  166 (235)
T TIGR03302       105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----------LRNRL-A------  166 (235)
T ss_pred             chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----------HHHHH-H------
Confidence            1  1344555666554        7889999999998875432 2223322221110          00000 0      


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGV--EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                        .....+...+.+.|++++|...++...+...  +.....+..+..++.+.|++++|..+++.+...
T Consensus       167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              1123566678899999999999999877521  223567888999999999999999988887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.93  E-value=5.5e-06  Score=70.51  Aligned_cols=131  Identities=8%  Similarity=0.011  Sum_probs=89.0

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC  179 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (403)
                      ..+-..+...+..++|+.+++++++..+. +..+|+....++...| ++++++..++++.+.  .+-+..+|+.....+.
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~  117 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHH
Confidence            33444455677888888888888875533 4556666666666666 567888888887763  3345556666555555


Q ss_pred             hcCCh--HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 015673          180 DSGSS--DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD  235 (403)
Q Consensus       180 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  235 (403)
                      +.|+.  ++++.+++++.+... -+..+|+....++...|+++++++.++++++.++.
T Consensus       118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~  174 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR  174 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence            56653  567777777777633 46777887777888888888888888888877544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.93  E-value=1.2e-06  Score=84.13  Aligned_cols=208  Identities=16%  Similarity=0.078  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCC---CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc
Q 015673           92 PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-GTP---RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD  167 (403)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  167 (403)
                      ..|.+...|...+....+.++.++|.+++++++.. ++.   --...|.++++.-...|.-+...++|+++.+-+   -.
T Consensus      1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DA 1529 (1710)
T ss_pred             cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---ch
Confidence            34444455666666666666666666666665442 110   012345555555444555555555666554321   11


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673          168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN  247 (403)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  247 (403)
                      ...|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++.-..-...-+-.-...
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            233555566666666666666666666554 3334455666666666666656666666555543111111111111111


Q ss_pred             h--cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673          248 T--YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS  304 (403)
Q Consensus       248 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  304 (403)
                      +  +.|+.+++..+|+.+.... +--...|+..++.-.+.|+.+.+..+|+++...++.
T Consensus      1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            1  4455555555555544432 112334555555555555555555555555544433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.3e-05  Score=70.75  Aligned_cols=332  Identities=11%  Similarity=0.086  Sum_probs=191.9

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      |.+...++.-+-++.+.++|++|+.+.+.-....  . ..... ..-+.+..+.+..++|...++-+.    ..+..+..
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~-~~~~~-fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~  114 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--V-INSFF-FEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLE  114 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--h-cchhh-HHHHHHHHHcccHHHHHHHHhccc----ccchHHHH
Confidence            4455667777788888899999986554433211  0 01111 123445567788888888877332    22233445


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCC---------------------------CcHHHHHHHH---HHHHhcCCcCcH
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTP---------------------------RSVISFNALL---FACTRSRLYDKV  151 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~~ll---~~~~~~~~~~~a  151 (403)
                      .-...+.+.|++++|+.+|+.+.+.+.+                           ....+|..+.   ..+...|++.+|
T Consensus       115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA  194 (652)
T KOG2376|consen  115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA  194 (652)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence            5566677888899998888888554322                           0112333332   235567888899


Q ss_pred             HHHHHHchhhC------CCCC--ch-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchh--------------
Q 015673          152 PILFDEIPKKY------NLSP--DK-----ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTV--------------  204 (403)
Q Consensus       152 ~~~~~~~~~~~------~~~~--~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------  204 (403)
                      ++++....+.+      +-.-  +.     ..--.+.-++...|+.++|.+++...++.+. +|..              
T Consensus       195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~  273 (652)
T KOG2376|consen  195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSK  273 (652)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhcc
Confidence            88888772211      0000  00     1122344556678888888888887766532 1211              


Q ss_pred             -------------------------------------------------------------------hHHHHHHHHHh--
Q 015673          205 -------------------------------------------------------------------TYTTVLNCLYK--  215 (403)
Q Consensus       205 -------------------------------------------------------------------~~~~ll~~~~~--  215 (403)
                                                                                         .+.+++..+.+  
T Consensus       274 d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~  353 (652)
T KOG2376|consen  274 DQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVR  353 (652)
T ss_pred             ccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH
Confidence                                                                               00111111100  


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCchH--HHHHHHhhh-cCCChHHHHHHHH--------HHHHCCCCCChhcHHHHHHHHHh
Q 015673          216 QGNAEEAERLWSEMEKKGVDLDVA--AYNVRITNT-YGGDPERLKELID--------EMRDAGLKPDTISYNFLMTCYCK  284 (403)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~-~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~  284 (403)
                      ...+..+..++...-+.  .|...  ..-..+... ..|+++.|.+++.        .+.+.+..|.  +...+...+.+
T Consensus       354 ~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~  429 (652)
T KOG2376|consen  354 EKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYK  429 (652)
T ss_pred             HHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHh
Confidence            01122333333333322  23321  111222222 8899999999999        5555554444  45566777788


Q ss_pred             cCChHHHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015673          285 NEMMDEAKKVYEGLEEN--GCSPNATTFRT----WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI  358 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  358 (403)
                      .++.+.|..++.+....  .-.+......+    ....-.+.|+.++|..+++++.+.+ ++|..+...++.+|++.. +
T Consensus       430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~  507 (652)
T KOG2376|consen  430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-P  507 (652)
T ss_pred             ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-H
Confidence            88888888888776531  01222233333    3334456799999999999999866 789999999999998764 5


Q ss_pred             HHHHHHHHHH
Q 015673          359 KEAKGVIRTI  368 (403)
Q Consensus       359 ~~a~~~~~~~  368 (403)
                      +.|..+-+.+
T Consensus       508 eka~~l~k~L  517 (652)
T KOG2376|consen  508 EKAESLSKKL  517 (652)
T ss_pred             HHHHHHhhcC
Confidence            6777665554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.89  E-value=2.2e-07  Score=69.51  Aligned_cols=120  Identities=8%  Similarity=-0.050  Sum_probs=93.4

Q ss_pred             HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673          257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (403)
                      +.+++...+.  .|+  .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++....
T Consensus        13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3455555554  344  35556778888999999999999988775 557788888888999999999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673          337 HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV  383 (403)
Q Consensus       337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  383 (403)
                      + +.+...+..+..++...|++++|+..|++..+ ..|+....|...
T Consensus        88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-~~p~~~~~~~~~  132 (144)
T PRK15359         88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-MSYADASWSEIR  132 (144)
T ss_pred             C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHH
Confidence            6 67788888899999999999999999999887 444544455433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.88  E-value=4e-05  Score=67.05  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             CCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673           20 STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY   99 (403)
Q Consensus        20 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (403)
                      ..|.+..+|..+++-+..+ ..+++.+.++++...-  |. +...|..-+....+.++++..+.+|.++...  ..+.+.
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--P~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDL   88 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--PS-SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDL   88 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--CC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhH
Confidence            3556778899999988777 9999999999998766  44 5567888899999999999999999998742  233445


Q ss_pred             HHHHH
Q 015673          100 LCNLI  104 (403)
Q Consensus       100 ~~~l~  104 (403)
                      |...+
T Consensus        89 W~lYl   93 (656)
T KOG1914|consen   89 WKLYL   93 (656)
T ss_pred             HHHHH
Confidence            54433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.87  E-value=7.7e-07  Score=73.33  Aligned_cols=187  Identities=15%  Similarity=0.076  Sum_probs=127.3

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH---
Q 015673          166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT---VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA---  239 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---  239 (403)
                      .....+..+...+...|+++.|...|+++.... +.+.   .++..+..++...|++++|...++++.+........   
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            456678888888999999999999999987752 2222   466778889999999999999999998864322221   


Q ss_pred             HHHHHHhhhcC--------CChHHHHHHHHHHHHCCCCCChh-cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015673          240 AYNVRITNTYG--------GDPERLKELIDEMRDAGLKPDTI-SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF  310 (403)
Q Consensus       240 ~~~~ll~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (403)
                      .+......+..        |+++.|.+.++.+...  .|+.. .+..+.... .   ....      ..        ...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~~------~~--------~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRNR------LA--------GKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHHH------HH--------HHH
Confidence            22222222222        6778888888888766  34332 222111110 0   0000      00        111


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMVH--KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      ..+...+.+.|++++|+..+++.++..  -+.....+..+..++.+.|++++|...++.+..+++
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            245667889999999999999998763  123457888999999999999999999999987664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.87  E-value=4.3e-05  Score=66.82  Aligned_cols=138  Identities=12%  Similarity=0.202  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHC-CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHH
Q 015673          253 PERLKELIDEMRDA-GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP-NATTFRTWIYHLCGSGNFDKAYKVF  330 (403)
Q Consensus       253 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~  330 (403)
                      .+....+++++... .+.|+ -+|..++..-.+..-+..|..+|.+..+.+..+ +..++++++.-+|. ++..-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            44445555555443 22333 356677777777888888889998888776666 56677777766664 6778888888


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCch-hHHHHHHHHHHhCCCCCC
Q 015673          331 KESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPN-VLRAWKKVEEELGLVPAP  393 (403)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~  393 (403)
                      +--+... ..++.-....++-+...++-..+..+|++.... .+++ ....|..+++--...||.
T Consensus       425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL  488 (656)
T ss_pred             HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence            8765543 345555567788888888888888888888775 4433 345788888766666654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.87  E-value=2.8e-06  Score=81.77  Aligned_cols=241  Identities=12%  Similarity=0.092  Sum_probs=182.2

Q ss_pred             HHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC----HHHHHHHHHHHhccCCHHHHHHHH
Q 015673           45 LDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ----EPYLCNLIRSYGQAGMFDHAMRTF  120 (403)
Q Consensus        45 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~  120 (403)
                      .+=|++.....  |. +...|-..+......++++.|.++.+++...-....    ...|.++++.-..-|.-+...++|
T Consensus      1444 aeDferlvrss--PN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1444 AEDFERLVRSS--PN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             HHHHHHHHhcC--CC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34455555555  43 556677777788899999999999999875432222    235777777777778889999999


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 015673          121 DQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE  200 (403)
Q Consensus       121 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  200 (403)
                      +++.+..  -....|..|...|.+.+.+++|.++++.|.++++  -....|...+..+.+.++-+.|..++.++.+. .+
T Consensus      1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP 1595 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP 1595 (1710)
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc
Confidence            9998842  2355688999999999999999999999999766  56678999999999999999999999998775 32


Q ss_pred             C--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCCh--hcH
Q 015673          201 V--TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDT--ISY  275 (403)
Q Consensus       201 ~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~--~~~  275 (403)
                      -  ......-.+..-.+.|+.+.+..+|+......++ -...|+..+..- ++|+.+.+..+|+++...++.|..  ..|
T Consensus      1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred             hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence            2  3344555667778999999999999999876422 455788888888 999999999999999998776643  344


Q ss_pred             HHHHHHHHhcCChHHHHHH
Q 015673          276 NFLMTCYCKNEMMDEAKKV  294 (403)
Q Consensus       276 ~~l~~~~~~~~~~~~A~~~  294 (403)
                      ...+..--+.|+-..+..+
T Consensus      1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHHHhcCchhhHHHH
Confidence            5455544455555444333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.87  E-value=2.5e-05  Score=77.99  Aligned_cols=338  Identities=9%  Similarity=0.007  Sum_probs=200.0

Q ss_pred             HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673           29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG  108 (403)
Q Consensus        29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (403)
                      ......+...|++.+|+..+..+....    ............+...|+++.+..+++.+.......+..........+.
T Consensus       345 ~raa~~~~~~g~~~~Al~~a~~a~d~~----~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~  420 (903)
T PRK04841        345 RAAAEAWLAQGFPSEAIHHALAAGDAQ----LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ  420 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCHH----HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence            334455566667766665444432111    0111112233445567888877777776532111112222334455566


Q ss_pred             ccCCHHHHHHHHHHHHhCCC------CCc--HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC---chHHHHHHHHH
Q 015673          109 QAGMFDHAMRTFDQMDELGT------PRS--VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP---DKISYGLLLKS  177 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~------~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~  177 (403)
                      ..|++++|...+......-.      .+.  ......+...+...|++++|...+++.........   .....+.+...
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            78999999999987754211      111  11222333456678999999999998765211111   11345666777


Q ss_pred             HHhcCChHHHHHHHHHHHhC----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-chHHHHHHH
Q 015673          178 HCDSGSSDKALELLNEMENK----GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK----GVD--L-DVAAYNVRI  245 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll  245 (403)
                      +...|+++.|...+++....    |. .....++..+...+...|++++|...+++....    +..  + ....+..+.
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            88899999999999887643    11 111234556677888999999999998876553    211  1 111222222


Q ss_pred             hhh-cCCChHHHHHHHHHHHHCC--CCC--ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHH
Q 015673          246 TNT-YGGDPERLKELIDEMRDAG--LKP--DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS-PNATTF-----RTWI  314 (403)
Q Consensus       246 ~~~-~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~  314 (403)
                      ..+ ..|++++|...+.+.....  ..+  ....+..+...+...|+.++|...+.......-. .....+     ...+
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence            223 7799999999998875431  112  1334445666778899999999999887542101 111111     1122


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHKIPD---FNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ..+...|+.+.|..++...........   ...+..+..++...|++++|...+++...
T Consensus       661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344568899999999877554221111   11234577788899999999999998865

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.85  E-value=3.1e-06  Score=80.33  Aligned_cols=246  Identities=17%  Similarity=0.106  Sum_probs=152.8

Q ss_pred             CCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC
Q 015673           16 AAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT   95 (403)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   95 (403)
                      ...+=.+.+...+..++..+...+++++|+++.+...+..  |. ....|..+...+.+.++.+++..+           
T Consensus        22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------   87 (906)
T PRK14720         22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KK-SISALYISGILSLSRRPLNDSNLL-----------   87 (906)
T ss_pred             ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--Cc-ceehHHHHHHHHHhhcchhhhhhh-----------
Confidence            3344455666778888888888899999999998777776  44 333344444466666664444333           


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673           96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL  175 (403)
Q Consensus        96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  175 (403)
                            .++.......++.-...++..|...+  -+..++..+..+|-+.|+.+++..+|+++.+.  -+-|+...|.+.
T Consensus        88 ------~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~A  157 (906)
T PRK14720         88 ------NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLA  157 (906)
T ss_pred             ------hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHH
Confidence                  34444444555544444455555532  34457777778888888888888888888764  255677778888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHH
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPER  255 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  255 (403)
                      ..|... ++++|.+++.+....               +...+++.++..+|.++....  |+..              +.
T Consensus       158 Y~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~--------------d~  205 (906)
T PRK14720        158 TSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDF--------------DF  205 (906)
T ss_pred             HHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccc--------------hH
Confidence            888777 888888887776553               555667777777777777652  2221              11


Q ss_pred             HHHHHHHHHHC-CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673          256 LKELIDEMRDA-GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC  318 (403)
Q Consensus       256 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (403)
                      -..+.+.+... |..--..++-.+-..|...++++++..+++.+.+.. +.|.....-++.+|.
T Consensus       206 f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        206 FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            12222222221 212234455556667777777888888888777664 335555555555554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=2.6e-05  Score=73.09  Aligned_cols=243  Identities=13%  Similarity=0.077  Sum_probs=135.6

Q ss_pred             CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH
Q 015673           19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP   98 (403)
Q Consensus        19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   98 (403)
                      -+.+.++........++...+-+.+-+++++++.-.+..-.......+.++-...+.. ..+..+..+++.. -..|+  
T Consensus       978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdn-yDa~~-- 1053 (1666)
T KOG0985|consen  978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDN-YDAPD-- 1053 (1666)
T ss_pred             CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhcc-CCchh--
Confidence            3344455666677888889999999999999987655222223333455554444443 3344455555432 11121  


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhC----------------------CCCCcHHHHHHHHHHHHhcCCcCcHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDEL----------------------GTPRSVISFNALLFACTRSRLYDKVPILFD  156 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  156 (403)
                          +...+...+-+++|..+|+.....                      .+ -.+..|..+..+-.+.|.+.+|++-|-
T Consensus      1054 ----ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1054 ----IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred             ----HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHH
Confidence                233344445555555555543210                      01 134556666666666777777666555


Q ss_pred             HchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673          157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL  236 (403)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (403)
                      +.       .|+..|..++....+.|.|++-.+++....+....|..  -+.|+-+|++.++..+..+.+.       -|
T Consensus      1129 ka-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1129 KA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred             hc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CC
Confidence            44       25666777777777777777777777777666554433  3466777777777666544431       24


Q ss_pred             chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 015673          237 DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVY  295 (403)
Q Consensus       237 ~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  295 (403)
                      +......+-..| ..+.++.|.-+|.         +...|..|...+...|++..|...-
T Consensus      1193 N~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred             CchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            444433333333 4455555544443         2233555555555666665555443

>PLN02789 farnesyltranstransferase

Probab=98.83  E-value=1.8e-05  Score=67.48  Aligned_cols=146  Identities=8%  Similarity=-0.039  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           64 AQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG-MFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                      ++..+-..+...++.++|+.+..++.. ..+.+..+|+....++...| ++++++..++.+.+...+ +..+|+.....+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~-lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIR-LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHH-HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence            334444555666778888888888774 34444555665555566666 568888888888776554 556676665555


Q ss_pred             HhcCCc--CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 015673          143 TRSRLY--DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLY  214 (403)
Q Consensus       143 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  214 (403)
                      .+.|+.  ++++.+++++.+  .-+-|..+|+...-++...|+++++++.++++++.+.. +...|+....++.
T Consensus       117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~  187 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT  187 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence            555553  566777777765  33456677777777777778888888888888776443 5566665554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.83  E-value=2.5e-06  Score=79.46  Aligned_cols=342  Identities=13%  Similarity=0.029  Sum_probs=206.9

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--CHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT--QEPYLCNL  103 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l  103 (403)
                      ..|..+...|+...+...|...|+.+.+.+  + .+..+.......|++..+++.|..+.-...+ ..+.  ....|...
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--a-tdaeaaaa~adtyae~~~we~a~~I~l~~~q-ka~a~~~k~nW~~r  568 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--A-TDAEAAAASADTYAEESTWEEAFEICLRAAQ-KAPAFACKENWVQR  568 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-hhhhhHHHHHHHhhccccHHHHHHHHHHHhh-hchHHHHHhhhhhc
Confidence            467778888888888888999999998887  3 3566677888999999999998888433321 1111  11224445


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHH-HHHHHHHHHhcC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS-YGLLLKSHCDSG  182 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~  182 (403)
                      .-.|.+.++...|+.-|+.....+++ |...|..+..+|.+.|++..|.++|++..   .+.|+... -.-....-+..|
T Consensus       569 G~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  569 GPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             cccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHhHHHHHHHHHHHHHhh
Confidence            56677889999999999999887765 88999999999999999999999998885   44454321 122233446778


Q ss_pred             ChHHHHHHHHHHHhC------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHH-------HHHcCCCCchHHH--------
Q 015673          183 SSDKALELLNEMENK------GVEVTTVTYTTVLNCLYKQGNAEEAERLWSE-------MEKKGVDLDVAAY--------  241 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~--------  241 (403)
                      .+.+|...+......      +..--..++--+...+...|-..++...+++       ........+...|        
T Consensus       645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~  724 (1238)
T KOG1127|consen  645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY  724 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence            898888888776542      1111112222222222223322223322222       2222111111111        


Q ss_pred             ---------------HHHHhhh-cCCCh---H---HHHHHHHHHHHCCCCCChhcHHHHHHHHHh----c----CChHHH
Q 015673          242 ---------------NVRITNT-YGGDP---E---RLKELIDEMRDAGLKPDTISYNFLMTCYCK----N----EMMDEA  291 (403)
Q Consensus       242 ---------------~~ll~~~-~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~A  291 (403)
                                     .++.... ..+..   +   .+.+.+-.-.+  ...+..+|..|...|.+    .    .+...|
T Consensus       725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~A  802 (1238)
T KOG1127|consen  725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTA  802 (1238)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence                           1111111 11111   1   11111111111  11234455555554443    1    223467


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          292 KKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      ...+...++.. ..+..+|+.|... ...|++.-|...|-+-+... +....+|..+...+.+..+++.|...|.+.+. 
T Consensus       803 i~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS-  878 (1238)
T KOG1127|consen  803 IRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS-  878 (1238)
T ss_pred             HHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh-
Confidence            77777776553 3466677766554 66678888888887765544 56677888888889999999999999998876 


Q ss_pred             CCchhHHHHH
Q 015673          372 FPPNVLRAWK  381 (403)
Q Consensus       372 ~~~~~~~~~~  381 (403)
                      ..|++...|-
T Consensus       879 LdP~nl~~Wl  888 (1238)
T KOG1127|consen  879 LDPLNLVQWL  888 (1238)
T ss_pred             cCchhhHHHH
Confidence            6666666774

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=4.1e-07  Score=81.73  Aligned_cols=243  Identities=9%  Similarity=-0.028  Sum_probs=179.3

Q ss_pred             CCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH
Q 015673           18 GSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQE   97 (403)
Q Consensus        18 ~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   97 (403)
                      .+..||-...-..+...+.+.|-...|+.+|++...           |..++.+|...|+..+|..+..+...  .+|+.
T Consensus       391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~  457 (777)
T KOG1128|consen  391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELE--KDPDP  457 (777)
T ss_pred             cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcc
Confidence            344555556666778888899999999999988743           44567788889988999888887764  56777


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      ..|..+.+......-+++|.++++.....       +-..+.....+.++++++.+.|+.-.+.  -+....+|.....+
T Consensus       458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~  528 (777)
T KOG1128|consen  458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCA  528 (777)
T ss_pred             hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHH
Confidence            78888888887777788888888776442       2222333334478888999888877653  33456778888888


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHH
Q 015673          178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK  257 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~  257 (403)
                      ..+.++++.|.+.|...... -+-+...||++-.+|.+.++..+|...+.+..+.+..+-.+.-|-++.+..-|.+++|.
T Consensus       529 ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  529 ALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            88999999999999988775 33466789999999999999999999999998887666666666666666889999999


Q ss_pred             HHHHHHHHCCC-CCChhcHHHHHHHHH
Q 015673          258 ELIDEMRDAGL-KPDTISYNFLMTCYC  283 (403)
Q Consensus       258 ~~~~~~~~~~~-~~~~~~~~~l~~~~~  283 (403)
                      +.+.++..... ..|..+...++....
T Consensus       608 ~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  608 KAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            99888764311 114444444444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=4.7e-06  Score=75.19  Aligned_cols=231  Identities=13%  Similarity=0.118  Sum_probs=153.4

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..+...+...|-..+|+.+|+++.         .|..++.+|...|+..+|..+..+..+   -+||...|..+......
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence            446677777788888888877654         355667777778888888777777654   35777777777777666


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI  260 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~  260 (403)
                      ..-+++|.++.+..-..       .-..+.....+.++++++.+.|+.-.+.+.---...|+.-..+++.++++.|.+.|
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            66677777777654322       11122222334678888888887776654333334444444444778888888888


Q ss_pred             HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-C
Q 015673          261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-I  339 (403)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~  339 (403)
                      ....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+-|.+++|++.+.++..... .
T Consensus       543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~  620 (777)
T KOG1128|consen  543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY  620 (777)
T ss_pred             HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence            8877652 2245678888888888888888888888888776 44556677777777888888888888887765421 1


Q ss_pred             CCHHHHHHHHHHH
Q 015673          340 PDFNTVKLLVEGL  352 (403)
Q Consensus       340 ~~~~~~~~l~~~~  352 (403)
                      .|......++...
T Consensus       621 ~d~~vl~~iv~~~  633 (777)
T KOG1128|consen  621 KDDEVLLIIVRTV  633 (777)
T ss_pred             ccchhhHHHHHHH
Confidence            2444444444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.79  E-value=4.2e-06  Score=79.45  Aligned_cols=262  Identities=8%  Similarity=0.012  Sum_probs=159.2

Q ss_pred             HHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 015673           49 SSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGT  128 (403)
Q Consensus        49 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  128 (403)
                      .++.-.+..|. ...++..++..+...+++++|.++.+.... ..+....+|..+...+.+.++.+.+..+         
T Consensus        19 ~r~~~~~~~p~-n~~a~~~Li~~~~~~~~~deai~i~~~~l~-~~P~~i~~yy~~G~l~~q~~~~~~~~lv---------   87 (906)
T PRK14720         19 TRADANNYSLS-KFKELDDLIDAYKSENLTDEAKDICEEHLK-EHKKSISALYISGILSLSRRPLNDSNLL---------   87 (906)
T ss_pred             hhcccccCCcc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCcceehHHHHHHHHHhhcchhhhhhh---------
Confidence            33334444343 445566777777777777777777775553 3333333444444456666665544443         


Q ss_pred             CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 015673          129 PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTT  208 (403)
Q Consensus       129 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (403)
                              .++.......++.-+..+...+..   ..-+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.
T Consensus        88 --------~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn  155 (906)
T PRK14720         88 --------NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKK  155 (906)
T ss_pred             --------hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHH
Confidence                    222222333334333333333332   22244567778888888888888888888888875 457788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCCh
Q 015673          209 VLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMM  288 (403)
Q Consensus       209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  288 (403)
                      +...|... +.++|.+++.+....              .+..+++..+.+++.++....  |+               ++
T Consensus       156 ~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~  203 (906)
T PRK14720        156 LATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DF  203 (906)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcC--cc---------------cc
Confidence            88888888 888888888777654              124457777888888887652  22               22


Q ss_pred             HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          289 DEAKKVYEGLEEN-GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRT  367 (403)
Q Consensus       289 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  367 (403)
                      +.-..+.+.+... |..--..++-.+...|-..+++++++.+++.+++.. +-|.....-++.+|.  +.+.. ...|++
T Consensus       204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee  279 (906)
T PRK14720        204 DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLED  279 (906)
T ss_pred             hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHH
Confidence            2233333333322 223334556666778888999999999999999876 446666777777776  33333 444444


Q ss_pred             HH
Q 015673          368 IK  369 (403)
Q Consensus       368 ~~  369 (403)
                      ..
T Consensus       280 ~l  281 (906)
T PRK14720        280 YL  281 (906)
T ss_pred             HH
Confidence            43

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.79  E-value=0.00014  Score=67.53  Aligned_cols=193  Identities=22%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      ....+++.+|+.......+..  |. ..++-..=.-.+.+.|+.++|..+++.... ....+..+...+-.+|.+.++.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYG-LKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCCchHHHHHHHHHHHHHhhhh
Confidence            345566777777777776666  32 222222223334566777777766666543 22235556666666777777777


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc----HHHHHHHc--------------------------------
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDK----VPILFDEI--------------------------------  158 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~--------------------------------  158 (403)
                      +|..+|++.....  |+......+..+|.+.+++.+    |+++++..                                
T Consensus        95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            7777777766543  455555666666666555443    23333322                                


Q ss_pred             --------hhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          159 --------PKKYNLSPDKISYGLLLKSHCDSGSSDKALELLN-EMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       159 --------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                              .+..|.--+..-...-...+...|++++|..++. ...+.-...+...-+--+..+...++|.+..++-.++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence                    2211100000000111122234456666666663 2323222223333344566677778888888888888


Q ss_pred             HHcC
Q 015673          230 EKKG  233 (403)
Q Consensus       230 ~~~~  233 (403)
                      ...+
T Consensus       253 l~k~  256 (932)
T KOG2053|consen  253 LEKG  256 (932)
T ss_pred             HHhC
Confidence            7775

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.78  E-value=2.5e-06  Score=67.58  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCC
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGD  252 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  252 (403)
                      ..+....+.|++..|...|.+.... -++|..+|+.+.-+|.+.|+.+.|..-|.+..+....-+...-|..+..+..|+
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd  183 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD  183 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence            3444444444444444444444433 233444444444444444444444444444444322222222222222224444


Q ss_pred             hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHH
Q 015673          253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVY  295 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  295 (403)
                      .+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus       184 ~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         184 LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            444444444444332 113333333444444444444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.78  E-value=3.3e-06  Score=66.88  Aligned_cols=159  Identities=13%  Similarity=0.023  Sum_probs=115.1

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673           66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS  145 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  145 (403)
                      ......+...|+-+....+..... ...+.+......++....+.|++..|...|.+.....+ +|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence            455666777777777777766655 34455555666677888888888888888888877554 4788888888888888


Q ss_pred             CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673          146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                      |++++|..-|.+..+-  .+-+....+.+.-.+.-.|+++.|..++......+. -|...-..+.......|+++.|..+
T Consensus       148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence            8888888888887653  233455667777777788888888888888776633 3666777777778888888888777


Q ss_pred             HHHH
Q 015673          226 WSEM  229 (403)
Q Consensus       226 ~~~~  229 (403)
                      ...-
T Consensus       225 ~~~e  228 (257)
T COG5010         225 AVQE  228 (257)
T ss_pred             cccc
Confidence            6543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=4.9e-06  Score=65.98  Aligned_cols=105  Identities=16%  Similarity=0.141  Sum_probs=47.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673          213 LYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM  287 (403)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  287 (403)
                      +.+..+.+-|.+.+++|.+.   .+..+.+.+..++     ..+....|.-+|++|.++ ..|+..+.+-.+.++...|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            33444444555555554442   1333333333222     223344555555555442 24455555555555555555


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673          288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN  322 (403)
Q Consensus       288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  322 (403)
                      +++|..++++...+. ..++.+...++.+-...|.
T Consensus       223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGK  256 (299)
T ss_pred             HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence            555555555555443 2234444444444444443

>PF12854 PPR_1: PPR repeat

Probab=98.76  E-value=1.3e-08  Score=54.43  Aligned_cols=28  Identities=32%  Similarity=0.738  Sum_probs=10.9

Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673          304 SPNATTFRTWIYHLCGSGNFDKAYKVFK  331 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (403)
                      .||..+|+++|.+|++.|++++|.++|+
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3333333333333333333333333333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.75  E-value=1.2e-06  Score=82.21  Aligned_cols=144  Identities=10%  Similarity=0.017  Sum_probs=116.5

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF  140 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  140 (403)
                      +..++..+.....+.|++++|..+++.+.. -.|.+......++..+.+.+++++|+..+++.....+. +......+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence            466677888889999999999999999884 55666667788999999999999999999999987654 6677788888


Q ss_pred             HHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 015673          141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV  209 (403)
Q Consensus       141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  209 (403)
                      ++.+.|++++|..+|+++..  ..+-+..++..+..++...|+.++|...|++..+. ..+....|+..
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~  228 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR  228 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence            89999999999999999986  33345778888999999999999999999998775 33344444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.74  E-value=3.5e-06  Score=76.12  Aligned_cols=188  Identities=19%  Similarity=0.244  Sum_probs=87.4

Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      .....|.+|+.+++.+..+   ..-..-|..+...|...|+++.|.++|-+.         ..++-.|..|.+.|+|+.|
T Consensus       743 i~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence            3344555555555555322   112223455555555556666555555432         1233344555566666665


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      .++-.+..  |.......|-.-..-+ .+|.+.+|++++-.+.    .|+.     .|..|-+.|..+..+++.++-...
T Consensus       811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d  879 (1636)
T KOG3616|consen  811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD  879 (1636)
T ss_pred             HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence            55544432  2222333333333333 5555555555554332    2232     345555555555555554432211


Q ss_pred             CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       302 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                         .-..|...+..-+-..|+...|...|-+.-         -|..-+..|-.++.|++|.++-
T Consensus       880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence               112234444555555666666655553321         2333445555556666555543

>PF12854 PPR_1: PPR repeat

Probab=98.73  E-value=2e-08  Score=53.66  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3789999999999999999999999999999984

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.72  E-value=6.4e-06  Score=77.33  Aligned_cols=147  Identities=13%  Similarity=0.012  Sum_probs=122.6

Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHH
Q 015673           92 PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY  171 (403)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  171 (403)
                      ..+.+...+..|.....+.|.+++|..+++.+.+..+. +......+...+.+.+++++|+..+++...  .-+-+....
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~  157 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI  157 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence            34455778888999999999999999999999996643 577788889999999999999999999986  445566778


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 015673          172 GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNV  243 (403)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  243 (403)
                      ..+..++.+.|++++|..+|+++... .+-+..++..+..++-..|+.++|...|+...+.. .+....|+.
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~  227 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR  227 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence            88889999999999999999999984 33468899999999999999999999999998763 333344443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=4.6e-05  Score=60.67  Aligned_cols=253  Identities=16%  Similarity=0.148  Sum_probs=167.5

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      ++-+.-.|++..++..-.......  .+...-..+.++|...|.+.....   .+..  +-.|.......+......-++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~--~~~~~lqAvr~~a~~~~~e~~   87 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKE--GKATPLQAVRLLAEYLELESN   87 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccc--ccCChHHHHHHHHHHhhCcch
Confidence            344555788888877666554432  344444555566777776654432   2222  223444444444444444455


Q ss_pred             hHHHH-HHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          184 SDKAL-ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       184 ~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      .++-. ++.+.+.......+......-...|+..|++++|++.......    .+....+  +..+ +..+.+.|.+.++
T Consensus        88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE~~Al~--VqI~lk~~r~d~A~~~lk  161 (299)
T KOG3081|consen   88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LEAAALN--VQILLKMHRFDLAEKELK  161 (299)
T ss_pred             hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            44443 3444454443443434444556678899999999998876221    1222222  2222 6788999999999


Q ss_pred             HHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          262 EMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      .|.+..   +..|.+.|..++.+    .+.+..|.-+|++|.++ .+|+..+.+....++...|++++|..+++..+.+.
T Consensus       162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            998753   66778878888764    45788999999999975 37899999999999999999999999999999876


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCc
Q 015673          338 KIPDFNTVKLLVEGLVKKKKIKE-AKGVIRTIKKKFPP  374 (403)
Q Consensus       338 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~  374 (403)
                       ..++.++..++.+-...|...+ ..+.+.+.+...|.
T Consensus       238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE  274 (299)
T ss_pred             -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence             5678888777777777776544 45667777664443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.70  E-value=5.6e-07  Score=71.23  Aligned_cols=161  Identities=11%  Similarity=0.045  Sum_probs=120.6

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (403)
                      +..|...|+++.+....+....    |. .         .+...++.+++...++.... ..+.+...|..+...|...|
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~---------~~~~~~~~~~~i~~l~~~L~-~~P~~~~~w~~Lg~~~~~~g   87 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL-H---------QFASQQTPEAQLQALQDKIR-ANPQNSEQWALLGEYYLWRN   87 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc-c---------cccCchhHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCC
Confidence            5677888998887554432211    21 0         12235666777777777763 56777888999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHhcCC--cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673          112 MFDHAMRTFDQMDELGTPRSVISFNALLFA-CTRSRL--YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL  188 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  188 (403)
                      ++++|...|++..+..+. +...+..+..+ +...|+  .++|.+++++..+  ..+-+...+..+...+.+.|++++|.
T Consensus        88 ~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai  164 (198)
T PRK10370         88 DYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAI  164 (198)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHH
Confidence            999999999999987754 77888888876 467777  4899999999986  34457788899999999999999999


Q ss_pred             HHHHHHHhCCCCCchhhHHHHHHH
Q 015673          189 ELLNEMENKGVEVTTVTYTTVLNC  212 (403)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~ll~~  212 (403)
                      ..|+++.+. .+|+..-+ .+|..
T Consensus       165 ~~~~~aL~l-~~~~~~r~-~~i~~  186 (198)
T PRK10370        165 ELWQKVLDL-NSPRVNRT-QLVES  186 (198)
T ss_pred             HHHHHHHhh-CCCCccHH-HHHHH
Confidence            999999887 44555444 34453

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=7.3e-05  Score=70.25  Aligned_cols=293  Identities=16%  Similarity=0.186  Sum_probs=198.1

Q ss_pred             HHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673           47 IYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP-YLCNLIRSYGQAGMFDHAMRTFDQMDE  125 (403)
Q Consensus        47 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~  125 (403)
                      +.+...+..++-..++......+.++...+-..+.+++++++.-.+..-+.. -+..|+-.-+-.-+.....+..+++..
T Consensus       969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen  969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN 1048 (1666)
T ss_pred             HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc
Confidence            3444444443333344555666777778888888888888876443332222 122233333334456667777777655


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhh
Q 015673          126 LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT  205 (403)
Q Consensus       126 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  205 (403)
                      .+. |+      +...+..++-+++|..+|++.-      .+....+.++.   ..+..+.|.++-++..      .+..
T Consensus      1049 yDa-~~------ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1049 YDA-PD------IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred             CCc-hh------HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHH
Confidence            432 22      3345556677788888887762      25555555554   3466777776666542      4578


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh
Q 015673          206 YTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK  284 (403)
Q Consensus       206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  284 (403)
                      |+.+..+-.+.|...+|++-|-+      ..|+..|.-++... +.|.+++..+.+....+..-.|..  =+.|+-+|++
T Consensus      1107 WsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence            99999999999999999877754      24677888888888 999999999999988877555544  4578899999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015673          285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV  364 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  364 (403)
                      .++..+-..++.       -||......+.+-|...|.++.|.-+|..         ..-|..|...+...|+++.|...
T Consensus      1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred             hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            999887665542       57888888888999999999888877754         33567788888888888888776


Q ss_pred             HHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          365 IRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      -++.      +....|..+-.+|--.+
T Consensus      1243 aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1243 ARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred             hhhc------cchhHHHHHHHHHhchh
Confidence            6554      34567887777665443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.67  E-value=1.6e-06  Score=64.55  Aligned_cols=113  Identities=12%  Similarity=0.028  Sum_probs=88.9

Q ss_pred             HHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          259 LIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       259 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      .++.+...  .| +......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++..+..+
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45555554  33 34456667778888999999999999988765 5577788888889999999999999999888765


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                       +.+...+..+..++...|++++|...|++..+..+.+
T Consensus        82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence             6677888888889999999999999999988754433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=2.1e-05  Score=62.01  Aligned_cols=154  Identities=11%  Similarity=-0.014  Sum_probs=69.7

Q ss_pred             CChHHHHHHHHHhhhccCCC---CcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHH
Q 015673           39 FDPDKALDIYSSVSKHYASP---VSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDH  115 (403)
Q Consensus        39 ~~~~~A~~~~~~~~~~~~~p---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (403)
                      .++++.++++..++......   +.--..|..++-+....|+.+.|...++.+.... +.+..+-..-...+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            34555555555554322110   1111223334444445555555555555554322 2222222222222333455555


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEME  195 (403)
Q Consensus       116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (403)
                      |+++|+.+.+.++. |..++..-+...-..|.--+|++-++...+  .+..|...|.-+...|...|++++|.-.++++.
T Consensus       105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            55555555554422 444444444444444444455555555544  334455555555555555555555555555554


Q ss_pred             h
Q 015673          196 N  196 (403)
Q Consensus       196 ~  196 (403)
                      -
T Consensus       182 l  182 (289)
T KOG3060|consen  182 L  182 (289)
T ss_pred             H
Confidence            4

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=2.1e-05  Score=72.10  Aligned_cols=311  Identities=12%  Similarity=0.083  Sum_probs=173.3

Q ss_pred             cchhHHHHH--hhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCC--------C
Q 015673           24 SSISVSKAK--SKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDP--------K   93 (403)
Q Consensus        24 ~~~~~~~l~--~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~   93 (403)
                      ++.+...++  +.|...|+.|.|.+..+.+.        +...|..+.+.+.+.++++-|.-.+-.|....        .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~  796 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ  796 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence            334444443  45667889998887766653        33467788888888888888777666654311        0


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH
Q 015673           94 ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL  173 (403)
Q Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  173 (403)
                      ..+...-....-.....|..++|+.+|.+-+..         ..|=..|...|.+++|.++-+.=-   .+. =..||..
T Consensus       797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D---RiH-Lr~Tyy~  863 (1416)
T KOG3617|consen  797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD---RIH-LRNTYYN  863 (1416)
T ss_pred             hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc---cee-hhhhHHH
Confidence            011111122334455778888998888887652         233345666788888887765431   121 2345555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHH----------hCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673          174 LLKSHCDSGSSDKALELLNEME----------NKG---------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV  234 (403)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  234 (403)
                      -...+...++.+.|+++|++..          ...         ...|...|.-...-+-..|+.+.|+.+|......  
T Consensus       864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~--  941 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY--  941 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh--
Confidence            5666666677777777776531          110         1224455666666666778888888888776542  


Q ss_pred             CCchHHHHHHHhh-hcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH----------CCC
Q 015673          235 DLDVAAYNVRITN-TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE----------NGC  303 (403)
Q Consensus       235 ~~~~~~~~~ll~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~  303 (403)
                            | .++.. |.+|+.++|.++-++-.      |......|.+.|-..|++.+|...|.+...          +++
T Consensus       942 ------f-s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen  942 ------F-SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred             ------h-hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence                  1 11111 14455555554443221      333333444445444554444444433211          110


Q ss_pred             C------------CCH-----------HHHHHHHHHHHccCChHHHHHHHHH--------HHhC--CCCCCHHHHHHHHH
Q 015673          304 S------------PNA-----------TTFRTWIYHLCGSGNFDKAYKVFKE--------SVMV--HKIPDFNTVKLLVE  350 (403)
Q Consensus       304 ~------------~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~  350 (403)
                      +            .|.           .-+..-+..|-+.|.+.+|+++.-+        ++..  .-..|+...+.-.+
T Consensus      1009 ~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred             HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            0            000           0112233456677777777665322        2222  22357788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 015673          351 GLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~  370 (403)
                      -++...++++|..++-..++
T Consensus      1089 FF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred             HHHhHHHHHHHHHHHHHHHH
Confidence            88888889998888766543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=4.1e-05  Score=66.25  Aligned_cols=116  Identities=14%  Similarity=0.088  Sum_probs=59.9

Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhcCChHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDSGSSDK  186 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  186 (403)
                      ...|++++|+..++.+...-+ -|...+......+.+.++.++|.+.++++..   ..|+ ....-.+..++.+.|++.+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence            345555555555555554322 1344444444555555555555555555543   2233 3344445555555555555


Q ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      |.++++..... .+.|+..|..|.++|...|+..++..-..+
T Consensus       393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            55555555544 334555555555555555555555444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=2.6e-05  Score=67.40  Aligned_cols=141  Identities=14%  Similarity=0.110  Sum_probs=73.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChH
Q 015673          213 LYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMD  289 (403)
Q Consensus       213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~  289 (403)
                      +...|++++|+..++.+...  .|+...|..+....  ..++..+|.+.++.+...  .|+ ....-.+..+|.+.|++.
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence            33455555555555555544  34444444444433  555555555555555554  333 333344455555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +|..+++...... +-|+..|..|.++|...|+..++....                  ...|...|+++.|...+...+
T Consensus       392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence            5555555555443 445555555555555555554444322                  223445566666666666666


Q ss_pred             HhCCchh
Q 015673          370 KKFPPNV  376 (403)
Q Consensus       370 ~~~~~~~  376 (403)
                      +....+.
T Consensus       453 ~~~~~~~  459 (484)
T COG4783         453 QQVKLGF  459 (484)
T ss_pred             HhccCCc
Confidence            6554443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.59  E-value=4e-06  Score=62.79  Aligned_cols=90  Identities=12%  Similarity=-0.035  Sum_probs=39.4

Q ss_pred             HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 015673          139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN  218 (403)
Q Consensus       139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  218 (403)
                      ...+...|++++|...|+....  --+.+...|..+..++...|++++|...|+..... .+.+...+..+..++...|+
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCC
Confidence            3344444444444444444432  12223344444444444444444444444444443 12234444444444444444


Q ss_pred             HHHHHHHHHHHHH
Q 015673          219 AEEAERLWSEMEK  231 (403)
Q Consensus       219 ~~~a~~~~~~~~~  231 (403)
                      +++|...|+...+
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=6.5e-05  Score=59.36  Aligned_cols=187  Identities=17%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             CcCcHHHHHHHchhhC--C-CCCchHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          147 LYDKVPILFDEIPKKY--N-LSPDKIS-YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~--~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      +.++..+++..+....  | ..++..+ |..++-+....|+.+.|...++.+... ++-+...-..-...+-..|++++|
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence            3444455544443221  2 2344432 445555666677777777777777665 433333322223334456778888


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      .++++.+.+.+ +.|.+++..-+... ..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            88888887764 34555555555555 667766777777777665 3558888888999999999999999888888765


Q ss_pred             CCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCC
Q 015673          302 GCSPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVH  337 (403)
Q Consensus       302 ~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  337 (403)
                      . +.++..+..+...+.-.|   +..-+.++|.+.++..
T Consensus       184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            3 445555666666554444   4567788888877654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.55  E-value=3.4e-05  Score=70.02  Aligned_cols=136  Identities=15%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChH
Q 015673          211 NCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD  289 (403)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  289 (403)
                      .+......|.+|+.+++.+..++  .-...|..+...| ..|+++.|+++|.+.-         .++-.|..|.+.|+|+
T Consensus       740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence            33445556666666666666542  2233445555555 6677777777665432         2344566677777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI  368 (403)
Q Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (403)
                      .|.++-.+....  ......|-.-..-+-..|++.+|.+++-.+   | .|+.     .|..|-+.|..+..+++.++-
T Consensus       809 da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  809 DAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             HHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence            777666554421  233445555555566677777777666332   2 3432     356777777777777776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=1.6e-05  Score=72.82  Aligned_cols=250  Identities=15%  Similarity=0.156  Sum_probs=148.4

Q ss_pred             HHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCCcHHHHHHHHH
Q 015673           70 RRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL---------GTPRSVISFNALLF  140 (403)
Q Consensus        70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~ll~  140 (403)
                      ..|...|+.+.|.+-.+.++      +..+|..+.+.|.+..+.+-|.-.+-.|...         ...++ .+-....-
T Consensus       736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv  808 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV  808 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence            34567788888877776665      3567889999999998888887777666431         01121 22233333


Q ss_pred             HHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHH
Q 015673          141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE  220 (403)
Q Consensus       141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  220 (403)
                      .....|.+++|+.+|.+..+          |..|=..|...|.+++|+++-+.=-...+   ..||.....-+-..+|.+
T Consensus       809 LAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHH
Confidence            45667888999999988853          45555667778999999888765433222   356666666677788888


Q ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673          221 EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE  300 (403)
Q Consensus       221 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  300 (403)
                      .|++.|++....    --..+..+.     .++...+.+.+.+.      |...|..-....-..|+++.|+.+|....+
T Consensus       876 ~AleyyEK~~~h----afev~rmL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  876 AALEYYEKAGVH----AFEVFRMLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHHHhcCCh----HHHHHHHHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            888888764221    111111111     12222222222222      334444445555566777777777765542


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          301 NGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       301 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                               |-++++..|-.|+.++|-++.++      .-|...-..+.+.|...|++.+|..+|.+.+
T Consensus       941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                     33455555666666666665544      1234444456666666666666666665554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.49  E-value=0.00089  Score=62.48  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=151.6

Q ss_pred             HHhcCCcchHHHHHHHhhcC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc
Q 015673           72 LAKSKRFSDIETLIESHKND-PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDK  150 (403)
Q Consensus        72 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  150 (403)
                      ....+++..|.....++.+. +..+...++.++  .+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            34567888888888887632 222222222222  346899999999999988877665 88999999999999999999


Q ss_pred             HHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC----------HH
Q 015673          151 VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN----------AE  220 (403)
Q Consensus       151 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~  220 (403)
                      |..+|+...+   .-|+......+..+|.+.+++.+-.+.--++.+. .+-+...+=++++.+.+.-.          ..
T Consensus        96 ~~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   96 AVHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            9999999974   4567777888888999998887655554444443 44455555566665544321          23


Q ss_pred             HHHHHHHHHHHcCCCC-chHHHHHHHhhh-cCCChHHHHHHH-HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 015673          221 EAERLWSEMEKKGVDL-DVAAYNVRITNT-YGGDPERLKELI-DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG  297 (403)
Q Consensus       221 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~-~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  297 (403)
                      -|.+.++.+.+.+... +..-...-+..+ ..|.+++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4566666666654111 111112222223 778899999999 4454443333444455667788889999999999999


Q ss_pred             HHHCC
Q 015673          298 LEENG  302 (403)
Q Consensus       298 ~~~~~  302 (403)
                      +...|
T Consensus       252 Ll~k~  256 (932)
T KOG2053|consen  252 LLEKG  256 (932)
T ss_pred             HHHhC
Confidence            98886

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.48  E-value=7.3e-06  Score=60.95  Aligned_cols=93  Identities=16%  Similarity=0.165  Sum_probs=42.7

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..+...+...|++++|.+.|+.+...+. .+...+..+...+...|++++|..+++...+  ..+.+...+..+..++..
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence            3344444444555555555555444332 1344444444444444555555555544433  122233444444444455


Q ss_pred             cCChHHHHHHHHHHHh
Q 015673          181 SGSSDKALELLNEMEN  196 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~  196 (403)
                      .|++++|.+.|+...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555544444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.39  E-value=2.2e-05  Score=68.37  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=77.2

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..++++.|..+|+++.+..  |+  ....+++.+...++-.+|.+++.+..+.. +-+..........|.+.++.+.|++
T Consensus       181 ~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            4466677777777776652  33  33446666666677777777777776542 3355556656666777777777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +.+++.+.. |.+..+|..|..+|.+.|++++|...++.+.
T Consensus       256 iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  256 IAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            777777654 4556677777777777777777777777664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.39  E-value=3.5e-05  Score=57.91  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=85.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHCCCCCCh----hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 015673          241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDT----ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA--TTFRTWI  314 (403)
Q Consensus       241 ~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~  314 (403)
                      |..++..+..++...+...++.+.+..  |+.    .....+...+...|++++|...|+.+......|+.  .....+.
T Consensus        15 y~~~~~~~~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQALQAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            444444446677888888888887763  222    23334556778889999999999998886522221  2344567


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI  368 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (403)
                      ..+...|++++|+..++.....  ...+..+....++|.+.|++++|...|++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7888899999999998764322  344556677888999999999999888764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.36  E-value=1.7e-05  Score=69.05  Aligned_cols=124  Identities=15%  Similarity=0.085  Sum_probs=97.1

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..|+..+...++++.|+.+|+++.+..  |+  ....++..+...++-.+|.+++++..+  ..+.+......-...+.+
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence            456777777888999999999988854  33  445577777777888888888888876  344566667777788888


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      .++++.|+++.+++.+. .+.+..+|..|..+|...|+++.|+..++.+.-
T Consensus       247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            99999999999998886 444666899999999999999999988887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=1.9e-05  Score=59.41  Aligned_cols=115  Identities=18%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             cCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH--HHHHHHHHHHhccCCH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQE--PYLCNLIRSYGQAGMF  113 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~  113 (403)
                      .++...+...++.+.+..  |..  ...+...+...+...|++++|...|+.+......+..  .....|..++...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            455555555555555544  211  1122223344444555555555555555432211110  1122244445555555


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH
Q 015673          114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD  156 (403)
Q Consensus       114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  156 (403)
                      ++|+..++......  .....+......+.+.|++++|...|+
T Consensus       102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55555554432211  122333344444555555555555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.26  E-value=6.2e-05  Score=54.44  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=79.4

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCS--PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPDFNTVKLLV  349 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~  349 (403)
                      ++..+...+.+.|++++|...|..+.+....  .....+..+..++.+.|++++|...|+.+.....  +.....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4566777888899999999999998865311  1134566788889999999999999999886531  12356677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKKFPPNVL  377 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~  377 (403)
                      .++.+.|++++|...++++.+..|.+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            8899999999999999999887766644

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.25  E-value=2.9e-05  Score=53.40  Aligned_cols=95  Identities=19%  Similarity=0.123  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK  354 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (403)
                      +..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            4556777788889999999998887763 3344667777888888899999999998887765 4455677888888888


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 015673          355 KKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       355 ~g~~~~a~~~~~~~~~~  371 (403)
                      .|++++|...+++..+.
T Consensus        81 ~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          81 LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHhHHHHHHHHHHHHcc
Confidence            99999999888887653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.24  E-value=0.00026  Score=58.03  Aligned_cols=57  Identities=9%  Similarity=0.063  Sum_probs=34.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENK--GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                      .+.+.|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|..+...+
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3455566777777777777776654  22233444555666777777777776665544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.24  E-value=2.8e-06  Score=46.10  Aligned_cols=33  Identities=30%  Similarity=0.641  Sum_probs=20.8

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN  306 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  306 (403)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=0.00024  Score=60.26  Aligned_cols=275  Identities=11%  Similarity=0.050  Sum_probs=151.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHHHHHHHHHhc
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYGLLLKSHCDS  181 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  181 (403)
                      ....+.+..++..|+..+....+..+. +...|..-+..+...|+++++.--.+.-.+   +.|. ...+.-.-+++...
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~  130 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLAL  130 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhh
Confidence            334455666677777777777776543 444555555555555666665544433321   1111 11122222222222


Q ss_pred             CChHHHHHHH---------------HHHHhCC-CCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673          182 GSSDKALELL---------------NEMENKG-VEVTTVTYTTV-LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR  244 (403)
Q Consensus       182 ~~~~~a~~~~---------------~~~~~~~-~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (403)
                      ++..+|.+.+               +...... -+|...++..+ ..++...|++++|.++-..+++...   ...+...
T Consensus       131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~  207 (486)
T KOG0550|consen  131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALY  207 (486)
T ss_pred             HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHH
Confidence            2222222222               2221111 12333444333 3456677888888888777776532   2223333


Q ss_pred             Hhhh---cCCChHHHHHHHHHHHHCCCCCChhcHHH---H----------HHHHHhcCChHHHHHHHHHHHHC---CCCC
Q 015673          245 ITNT---YGGDPERLKELIDEMRDAGLKPDTISYNF---L----------MTCYCKNEMMDEAKKVYEGLEEN---GCSP  305 (403)
Q Consensus       245 l~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l----------~~~~~~~~~~~~A~~~~~~~~~~---~~~~  305 (403)
                      +...   ..++.+.+...|++.+..  .|+...-..   .          ..-..+.|.+..|.+.|.+.+..   +..|
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~  285 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT  285 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence            3332   778888888888887765  344322111   1          12245678888898888887753   3456


Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCchhHHHHHHHH
Q 015673          306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK-FPPNVLRAWKKVE  384 (403)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~  384 (403)
                      +...|.....+..+.|+..+|+.--+...+.+ +.-...|..-..++...++|++|.+-+++..+. ..+.....|....
T Consensus       286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~  364 (486)
T KOG0550|consen  286 NAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ  364 (486)
T ss_pred             hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            66777777778888899999888888776543 122334444455666778888888888887653 2233333444444


Q ss_pred             HHh
Q 015673          385 EEL  387 (403)
Q Consensus       385 ~~~  387 (403)
                      .++
T Consensus       365 ~aL  367 (486)
T KOG0550|consen  365 LAL  367 (486)
T ss_pred             HHH
Confidence            333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=0.00018  Score=58.76  Aligned_cols=114  Identities=13%  Similarity=0.138  Sum_probs=96.6

Q ss_pred             CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCCHHHH
Q 015673          269 KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVHKIPDFNTV  345 (403)
Q Consensus       269 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~  345 (403)
                      +-|...|..|..+|...|+++.|..-|.+..+.. .+|...+..+..++..+.   ...++..+|++++..+ +-++.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            5588999999999999999999999999998764 567777777777665543   3568999999999877 6788888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673          346 KLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE  386 (403)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  386 (403)
                      ..|...+...|++.+|...|+.|.+..||+..  |..+++.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~--rr~~ie~  269 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP--RRSLIER  269 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc--hHHHHHH
Confidence            88999999999999999999999999998864  6666654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.19  E-value=3.4e-06  Score=45.39  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=19.8

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP  305 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  305 (403)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355666666666666666666666666655554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.19  E-value=3.3e-06  Score=45.80  Aligned_cols=33  Identities=36%  Similarity=0.743  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVT  202 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  202 (403)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455556666666666666666666655555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.18  E-value=5.1e-05  Score=54.87  Aligned_cols=101  Identities=14%  Similarity=0.037  Sum_probs=65.0

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC--CCHHHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI--TQEPYLCNLI  104 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~  104 (403)
                      .+...+..+...|++++|.+.|+.+.............+..+..++.+.|+++.|...|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            45566677777788888888887777665111112344556777777777777777777776642211  1234456666


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCC
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .++.+.|++++|...++++.+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHC
Confidence            77777777777777777777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.18  E-value=7e-05  Score=65.58  Aligned_cols=123  Identities=19%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhc
Q 015673          198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG--VDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTIS  274 (403)
Q Consensus       198 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~  274 (403)
                      +.+.+......+++.+....+.+.+..++.+.....  ...-+.|..+++..| ..|..+.+..+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            344455666666666666666667777666665541  112234445666666 66667777777766666677777777


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS  320 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  320 (403)
                      +|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7777777777777777777766666555555555555555554443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.17  E-value=0.00017  Score=61.00  Aligned_cols=93  Identities=13%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             HHHHhc-CCcCcHHHHHHHchhhCCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----chh-hHHH
Q 015673          140 FACTRS-RLYDKVPILFDEIPKKYNLSPD----KISYGLLLKSHCDSGSSDKALELLNEMENKGVEV-----TTV-TYTT  208 (403)
Q Consensus       140 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~  208 (403)
                      ..|... |++++|++.|++..+-+.....    ...+..+...+.+.|++++|.++|++........     +.. .|..
T Consensus       122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~  201 (282)
T PF14938_consen  122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK  201 (282)
T ss_dssp             HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence            344444 5666666666655432111111    2234455566666777777777776665432211     111 2223


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          209 VLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       209 ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      .+-++...||+..|.+.+++....
T Consensus       202 a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  202 AILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Confidence            333555566666666666666543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=3.5e-05  Score=62.51  Aligned_cols=85  Identities=13%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..+++++|+..|.+..+.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|++
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence            4455556666665555542 2244445555555556666665555555555442 1123355555555555566666655


Q ss_pred             HHHHHHh
Q 015673          329 VFKESVM  335 (403)
Q Consensus       329 ~~~~~~~  335 (403)
                      .|++.++
T Consensus       171 aykKaLe  177 (304)
T KOG0553|consen  171 AYKKALE  177 (304)
T ss_pred             HHHhhhc
Confidence            5555553

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.16  E-value=5.1e-06  Score=44.68  Aligned_cols=32  Identities=34%  Similarity=0.608  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673          205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL  236 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (403)
                      +|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44555555555555555555555555544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.15  E-value=9.2e-05  Score=52.80  Aligned_cols=111  Identities=12%  Similarity=0.018  Sum_probs=79.5

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC---CHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT---QEPYLCNLI  104 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~  104 (403)
                      ......++-..|+.++|+.+|++....+.........+-.+...+...|++++|..++++..... +.   +......+.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLA   82 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHH
Confidence            34466777888999999999999999885444445566678888889999999999999887432 22   223333455


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT  143 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  143 (403)
                      .++...|+.++|++.+-....    ++...|..-|..|.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            667788999999988877665    45556666666554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=0.0015  Score=55.68  Aligned_cols=298  Identities=11%  Similarity=0.005  Sum_probs=161.5

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      .......+.+..++..|+..+..+++..  |.. ...|..-+..+...+++++|.--.+.-.+.. +.........-+++
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMC--PDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCH  127 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhC--ccc-hhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhh
Confidence            4455677778888999999999999888  553 4455556666777788877766555443211 11112233455555


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH-HHHHHhcCChHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL-LKSHCDSGSSDK  186 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~  186 (403)
                      ...++..+|.+.++.-         ..+           ....++..++.+.....-+|...++..+ ..++.-.|++++
T Consensus       128 ~a~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~  187 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE  187 (486)
T ss_pred             hhhHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence            5556666665555511         111           0112222223332222222333444333 234445666666


Q ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH--------------HhhhcCCC
Q 015673          187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR--------------ITNTYGGD  252 (403)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~~~~~~~  252 (403)
                      |.+.--...+... .+....-.=..++.-.++.+.+...|++.+..+  |+.......              -.+++.|.
T Consensus       188 a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~  264 (486)
T KOG0550|consen  188 AQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN  264 (486)
T ss_pred             HHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence            6666555544321 122211111223334556666666666665542  332211111              11236688


Q ss_pred             hHHHHHHHHHHHHC---CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChHHH
Q 015673          253 PERLKELIDEMRDA---GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT---TFRTWIYHLCGSGNFDKA  326 (403)
Q Consensus       253 ~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a  326 (403)
                      +..|.+.|.+.+..   +.+|+...|.....+..+.|+..+|+.-.++..+.    |..   .|..-..++...+++++|
T Consensus       265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~A  340 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEA  340 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887754   23444555666667777888888888888877754    332   222333455667888888


Q ss_pred             HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 015673          327 YKVFKESVMVHKIP-DFNTVKLLVEGLVKKK  356 (403)
Q Consensus       327 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  356 (403)
                      .+-+++..+....+ ...++.....++-++.
T Consensus       341 V~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk  371 (486)
T KOG0550|consen  341 VEDYEKAMQLEKDCEIRRTLREAQLALKKSK  371 (486)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence            88888877654222 2344444444444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.12  E-value=0.00014  Score=63.62  Aligned_cols=87  Identities=11%  Similarity=-0.036  Sum_probs=52.3

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|+++.|+..|+++.+.. +.+...|..+..+|...|++++|+..++.+++.. +.+...|..+..+|...|++++|+.
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            5566666666666666553 2244555556666666666666666666666553 3345556666666666666666666


Q ss_pred             HHHHHHhCC
Q 015673          329 VFKESVMVH  337 (403)
Q Consensus       329 ~~~~~~~~~  337 (403)
                      .|++.+..+
T Consensus        92 ~~~~al~l~  100 (356)
T PLN03088         92 ALEKGASLA  100 (356)
T ss_pred             HHHHHHHhC
Confidence            666666543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.11  E-value=6.8e-06  Score=55.18  Aligned_cols=81  Identities=21%  Similarity=0.266  Sum_probs=49.2

Q ss_pred             cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015673          285 NEMMDEAKKVYEGLEENGCS-PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKG  363 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  363 (403)
                      .|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            46677777777777765321 1334444567777777777777777766 3222 1233444455777777777777777


Q ss_pred             HHHH
Q 015673          364 VIRT  367 (403)
Q Consensus       364 ~~~~  367 (403)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.11  E-value=8.7e-05  Score=54.89  Aligned_cols=95  Identities=8%  Similarity=-0.029  Sum_probs=62.4

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                      .+...+...|++++|..+|+-+.. -.+.+...|..|.-++-..|++++|+..|......++. |...+-.+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~-~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTI-YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence            445555666777777777776653 34455555666777777777777777777777666543 6666666777777777


Q ss_pred             CcCcHHHHHHHchhhCC
Q 015673          147 LYDKVPILFDEIPKKYN  163 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~~  163 (403)
                      +.+.|.+.|+..+..++
T Consensus       118 ~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        118 NVCYAIKALKAVVRICG  134 (157)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            77777777776665443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.09  E-value=0.00015  Score=53.70  Aligned_cols=94  Identities=6%  Similarity=-0.028  Sum_probs=66.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015673          276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK  355 (403)
Q Consensus       276 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  355 (403)
                      -.+..-+...|++++|.++|+.+...+ +-+..-|-.|..++-..|++++|+..|......+ +.++..+..+..++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence            334455567777888888777777654 3455566667777777778888888877777766 56677777777777788


Q ss_pred             CCHHHHHHHHHHHHHh
Q 015673          356 KKIKEAKGVIRTIKKK  371 (403)
Q Consensus       356 g~~~~a~~~~~~~~~~  371 (403)
                      |+.+.|.+.|+.....
T Consensus       117 G~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKALKAVVRI  132 (157)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8888887777777653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.09  E-value=8.1e-06  Score=54.82  Aligned_cols=81  Identities=11%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             cCChHHHHHHHHHhhhccCCCCc-chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVS-SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHA  116 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  116 (403)
                      .|+++.|+.+|+++.+..  |.. +...+..++.++.+.|++++|..+++...  ..+.+......+..++.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~--~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK--LDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT--HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            578899999999998888  432 33344557888999999999999988722  2222334444568888899999999


Q ss_pred             HHHHHH
Q 015673          117 MRTFDQ  122 (403)
Q Consensus       117 ~~~~~~  122 (403)
                      +++|++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.08  E-value=0.00026  Score=66.62  Aligned_cols=183  Identities=8%  Similarity=-0.018  Sum_probs=129.4

Q ss_pred             cchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHH
Q 015673           78 FSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDE  157 (403)
Q Consensus        78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  157 (403)
                      ...|...|-+..+ ..+.-.+.|..|...|....+...|.+.|+..-+.+.. +...+......|++..+++.|..+.-.
T Consensus       474 ~~~al~ali~alr-ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALR-LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            5556665555543 34444566888888888888889999999999887654 777888889999999999999888444


Q ss_pred             chhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 015673          158 IPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD  237 (403)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  237 (403)
                      ..++.....-...|....-.|.+.++...|..-|+...+.. +.|...|..++.+|...|++..|.++|.+....  .|+
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence            33221111112234445556778888999999999888763 347888999999999999999999999888775  344


Q ss_pred             hHH--HHHHHhhhcCCChHHHHHHHHHHHH
Q 015673          238 VAA--YNVRITNTYGGDPERLKELIDEMRD  265 (403)
Q Consensus       238 ~~~--~~~ll~~~~~~~~~~a~~~~~~~~~  265 (403)
                      ...  |...+..+..|.+.++...+.....
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            322  2222222377888888888887653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.06  E-value=0.00012  Score=56.98  Aligned_cols=86  Identities=14%  Similarity=0.059  Sum_probs=48.8

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..+...+...|++++|+..|+++.+....+......+..+...+.+.|++++|...+++... ..+.+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-LNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence            34555666666667777777777766655422221234455666666666677776666666653 22333444555555


Q ss_pred             HHhccCC
Q 015673          106 SYGQAGM  112 (403)
Q Consensus       106 ~~~~~~~  112 (403)
                      ++...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            5555555

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.05  E-value=8.8e-05  Score=64.96  Aligned_cols=132  Identities=13%  Similarity=0.161  Sum_probs=107.7

Q ss_pred             HHHHchhhC--CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          154 LFDEIPKKY--NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK--GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       154 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                      ++..|.+.+  +.+.+......++..+....+.+.+..++.+....  ....-..|..++++.|...|..+.++.++..=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            444443332  34556777888899888888999999999998765  23233456679999999999999999999999


Q ss_pred             HHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673          230 EKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN  285 (403)
Q Consensus       230 ~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  285 (403)
                      ...|+-||..++|.++..+ ..|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999 9999999999999998887777777777666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=0.00011  Score=64.19  Aligned_cols=96  Identities=9%  Similarity=-0.001  Sum_probs=80.1

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      +......+...|++++|++.|+++++.+  |. +...|..+..++...|++++|+..++.+.. ..+.+...|..+..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~~~~a~~~lg~~~   80 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--PN-NAELYADRAQANIKLGNFTEAVADANKAIE-LDPSLAKAYLRKGTAC   80 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHH
Confidence            3445677788899999999999999988  54 556777888999999999999999999875 4455667788889999


Q ss_pred             hccCCHHHHHHHHHHHHhCC
Q 015673          108 GQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~  127 (403)
                      ...|++++|+..|+...+.+
T Consensus        81 ~~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhC
Confidence            99999999999999998865

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.99  E-value=0.00055  Score=53.16  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=60.5

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++.++.. +.+...+..+..+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            455555666666777777777766664322221  2455666666666777777777777666543 3344555555566


Q ss_pred             HHhcCC--------------HHHHHHHHHHHHHhCCch
Q 015673          352 LVKKKK--------------IKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       352 ~~~~g~--------------~~~a~~~~~~~~~~~~~~  375 (403)
                      +...|+              +++|.+++++..+..|.+
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            665555              567777777777655544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.98  E-value=0.00012  Score=50.13  Aligned_cols=58  Identities=22%  Similarity=0.206  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                      +..+...+...+++++|.+.++...... +.+..++..+..++...|+++.|...+...
T Consensus        37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          37 YYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3333444444444444444444443331 112233344444444444444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.95  E-value=0.00026  Score=54.80  Aligned_cols=63  Identities=10%  Similarity=-0.071  Sum_probs=30.1

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT--QEPYLCNLIRSYGQAGMFDHAMRTFDQMDE  125 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  125 (403)
                      ..+..++..+...|++++|...|+........+  ...++..+..++...|++++|+..++....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444445555555555555555554221111  112344455555555555555555555544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.93  E-value=0.00021  Score=49.08  Aligned_cols=76  Identities=16%  Similarity=0.325  Sum_probs=46.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEENGC-SPNATTFRTWIYHLCGSG--------NFDKAYKVFKESVMVHKIPDFNTVKLLV  349 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (403)
                      |..|...+++.....+|+.+...|+ .|+..+|+.++.+.++..        +.-+.+.++++|+..+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            4444444666666666666666666 666666666666555432        2234556666676666677777777666


Q ss_pred             HHHHh
Q 015673          350 EGLVK  354 (403)
Q Consensus       350 ~~~~~  354 (403)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            66543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.93  E-value=0.00096  Score=53.33  Aligned_cols=64  Identities=11%  Similarity=0.128  Sum_probs=39.8

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN   90 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   90 (403)
                      .+......+...|++.+|++.|+.+........-...+...++.++.+.|+++.|...++....
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444556666777778888877777776633333444555667777777777777777777653

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.92  E-value=0.00034  Score=58.90  Aligned_cols=128  Identities=13%  Similarity=0.116  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK-QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT  248 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  248 (403)
                      +|..+++..-+.+..+.|.++|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. ...+...+...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34445555555555555555555554321 1122333333332122 33444455555554443 222333333333333


Q ss_pred             -cCCChHHHHHHHHHHHHCCCCCCh---hcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673          249 -YGGDPERLKELIDEMRDAGLKPDT---ISYNFLMTCYCKNEMMDEAKKVYEGLEE  300 (403)
Q Consensus       249 -~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~  300 (403)
                       ..++.+.+..+|+..... +.++.   ..|...+..-.+.|+.+.+..+.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             444555555555554433 11111   2444444444444555555555544444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.91  E-value=0.00026  Score=54.76  Aligned_cols=113  Identities=9%  Similarity=-0.005  Sum_probs=66.5

Q ss_pred             cchHHHHHHHhh-cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCCcCcHHHH
Q 015673           78 FSDIETLIESHK-NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPR--SVISFNALLFACTRSRLYDKVPIL  154 (403)
Q Consensus        78 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~  154 (403)
                      +..+...+..+. ..+.......+..++..+...|++++|+..|+........+  ...++..+...+...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333444444442 22233334456667777778888888888888887643222  234677777778888888888888


Q ss_pred             HHHchhhCCCCCchHHHHHHHHHHH-------hcCChHHHHHHHH
Q 015673          155 FDEIPKKYNLSPDKISYGLLLKSHC-------DSGSSDKALELLN  192 (403)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~  192 (403)
                      +++....  .+....++..+...+.       ..|+++.|...++
T Consensus        95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            8777642  2223344555555554       5555554444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.91  E-value=0.0037  Score=52.92  Aligned_cols=122  Identities=16%  Similarity=0.185  Sum_probs=72.9

Q ss_pred             hh-cC-CChHHHHHHHHHHHHC----CCCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHH
Q 015673          247 NT-YG-GDPERLKELIDEMRDA----GLKPD--TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP-----NAT-TFRT  312 (403)
Q Consensus       247 ~~-~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~-~~~~  312 (403)
                      .+ .. |+++.|.+.|++..+.    + .+.  ..++..+...+.+.|++++|..+|+++...-...     +.. .+-.
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~  201 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK  201 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence            44 45 7888888888876542    2 111  2355667778889999999999999887643221     111 2233


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          313 WIYHLCGSGNFDKAYKVFKESVMVH--KIPD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+-++...|+...|.+.+++.....  +..+  ......|+.++ +.|+.+.....+.+..+
T Consensus       202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence            3446667788999999998887552  2223  33445555555 56777666666666654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.89  E-value=0.0094  Score=49.00  Aligned_cols=179  Identities=11%  Similarity=0.085  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY---TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN  247 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  247 (403)
                      +-.....+...|++++|.+.|+.+... .+-+...-   -.++.++.+.+++++|...+++..+..+.....-+...+.+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            334445556678888888888887765 22222222   34566777888888888888887776332222222222221


Q ss_pred             h---cC---------------CCh---HHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015673          248 T---YG---------------GDP---ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN  306 (403)
Q Consensus       248 ~---~~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  306 (403)
                      .   ..               .|.   ..|...|+.+++.  -|+.             .-..+|...+..+...   .-
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~---la  175 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR---LA  175 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH---HH
Confidence            1   00               111   2344455555444  3333             2234444444333321   00


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMV--HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                       ..--.+..-|.+.|.+..|+.-++.+++.  +.+...+....++.+|...|..++|..+...+.
T Consensus       176 -~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        176 -KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             -HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence             11114456688888888888888888875  334456677788889999999999888776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.89  E-value=0.0001  Score=46.61  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      +...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+..|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3456777788888888888877765 45667777777788888888888888887776444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.88  E-value=2.3e-05  Score=40.96  Aligned_cols=29  Identities=38%  Similarity=0.785  Sum_probs=16.6

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.84  E-value=0.00034  Score=48.06  Aligned_cols=76  Identities=12%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCchHHHHH
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENKGV-EVTTVTYTTVLNCLYKQGN--------AEEAERLWSEMEKKGVDLDVAAYNV  243 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~  243 (403)
                      ..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-        .-..+.+++.|+..+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344445555666666666666666666 6666666666666554421        2234444455555555555555555


Q ss_pred             HHhhh
Q 015673          244 RITNT  248 (403)
Q Consensus       244 ll~~~  248 (403)
                      ++..+
T Consensus       110 vl~~L  114 (120)
T PF08579_consen  110 VLGSL  114 (120)
T ss_pred             HHHHH
Confidence            44443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.83  E-value=3e-05  Score=40.54  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=13.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          205 TYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      +|+.++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.83  E-value=0.00013  Score=46.70  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 015673          306 NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK-KIKEAKGVIRTIKK  370 (403)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~  370 (403)
                      +..+|..+...+...|++++|+..|++.++.+ +.++..|..+..+|...| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34566677777777777777777777777665 456667777777777777 57777777777665

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.81  E-value=0.00033  Score=58.98  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=32.7

Q ss_pred             HHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---hhHHHHHHHHHhcCCHHHHHHHHH
Q 015673          151 VPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT---VTYTTVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       151 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~  227 (403)
                      |..+|+...+.  ++.+...|..-+..+...|+.+.|..+|++.... +.++.   ..|...+..-.+.|+.+.+.++.+
T Consensus        55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~  131 (280)
T PF05843_consen   55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK  131 (280)
T ss_dssp             HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred             HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44444444442  2223333444444444444444444444444433 22111   244444444455555555555554


Q ss_pred             HHHH
Q 015673          228 EMEK  231 (403)
Q Consensus       228 ~~~~  231 (403)
                      ++.+
T Consensus       132 R~~~  135 (280)
T PF05843_consen  132 RAEE  135 (280)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.79  E-value=9.6e-05  Score=47.21  Aligned_cols=56  Identities=18%  Similarity=0.320  Sum_probs=40.3

Q ss_pred             HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      ...|++++|+++|+++.... +.+......+..+|.+.|++++|.++++++....+.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            45677788888888877665 556777777788888888888888888887764444

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.78  E-value=0.0054  Score=46.47  Aligned_cols=120  Identities=13%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHh
Q 015673           66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RSVISFNALLFACTR  144 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~  144 (403)
                      ..+..++.+.|+..+|...|++........+......+.++....+++..|...++++.+..+. .+..+...+...+..
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa  172 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA  172 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence            4566666677777777777776665444555555566666666667777777766666553311 122333444555666


Q ss_pred             cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673          145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL  188 (403)
Q Consensus       145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  188 (403)
                      .|.+..|...|+....-   -|+...-......+.+.|+.+++.
T Consensus       173 ~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         173 QGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             cCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence            66666666666666532   233332222233334455444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.027  Score=52.07  Aligned_cols=314  Identities=15%  Similarity=0.093  Sum_probs=175.2

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcc--hHHH-HHHHhhcCCCCCCHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFS--DIET-LIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~--~a~~-~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...++..+...+.+..|+++-.++.....  .. ...|....+-+.+..+..  ++.+ +-+++. ... .+...|..+.
T Consensus       440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA  514 (829)
T KOG2280|consen  440 EEVVIDRLVDRHLYSVAIQVAKLLNLPES--QG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIA  514 (829)
T ss_pred             hhhhhHHHHhcchhHHHHHHHHHhCCccc--cc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHH
Confidence            34468888888999999999888854331  11 355666676666663322  2223 323332 222 3344577777


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----------CCCchHH
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTP----RSVISFNALLFACTRSRLYDKVPILFDEIPKKYN----------LSPDKIS  170 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~  170 (403)
                      +-....|+++-|..+++.=...+..    .+...+..-+.-+.+.|+.+....++-.+..+..          .+.....
T Consensus       515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l  594 (829)
T KOG2280|consen  515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL  594 (829)
T ss_pred             HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence            7777899999998887653322211    1233345556667778888887777666644310          1111112


Q ss_pred             HHHHHHH--------HHhcCChHHHHHHH--HHHHhC-CCCCchhhHHHHHHHHHhcCCHHH----------HHHHHHHH
Q 015673          171 YGLLLKS--------HCDSGSSDKALELL--NEMENK-GVEVTTVTYTTVLNCLYKQGNAEE----------AERLWSEM  229 (403)
Q Consensus       171 ~~~l~~~--------~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~  229 (403)
                      |..+++.        +...++-..+...|  +..... -+.+-........+.+.+.....-          -+++.+.+
T Consensus       595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L  674 (829)
T KOG2280|consen  595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL  674 (829)
T ss_pred             HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            2222210        01111111111111  110000 011111222334444544443211          11222222


Q ss_pred             HH-cCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 015673          230 EK-KGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA  307 (403)
Q Consensus       230 ~~-~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  307 (403)
                      .. .|......+.+-.+.-+ ..|+..+|.++-.+..    -||-..|..-+.+++..+++++-+++-+...      .+
T Consensus       675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP  744 (829)
T KOG2280|consen  675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP  744 (829)
T ss_pred             HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence            21 22233334444444444 7788888888887775    5688888888889999999988666554433      24


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      .-|.-++.+|.+.|+.++|.+++.+..     +..    ..+.+|.+.|++.+|.++-
T Consensus       745 IGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  745 IGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             CCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence            567778889999999999999886642     211    4677888999988887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.77  E-value=0.00085  Score=55.52  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA----TTFRTWIYHLCGSGNFDKAYKVFKESVMVH--KIPDFNTVKL  347 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~  347 (403)
                      .|...+..+.+.|++++|...|+.+++.  .|+.    ..+-.+..+|...|++++|...|+.+.+..  -+..+..+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3554444446678889999888888876  3432    456677888888999999999998888643  1223556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673          348 LVEGLVKKKKIKEAKGVIRTIKKKFPPNV  376 (403)
Q Consensus       348 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  376 (403)
                      +..++...|++++|.++++++.+.+|.+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            77788889999999999999988777654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.74  E-value=0.027  Score=51.69  Aligned_cols=127  Identities=15%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             CChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc-CCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673           39 FDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN-DPKITQEPYLCNLIRSYGQAGMFDHAM  117 (403)
Q Consensus        39 ~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~  117 (403)
                      |++++|.++|-.+-+++           ..+....+.|++-...++++.-.. .........|+.+...+.....|++|.
T Consensus       748 g~feeaek~yld~drrD-----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~  816 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRD-----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA  816 (1189)
T ss_pred             cchhHhhhhhhccchhh-----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666665553333           334555566666666655554221 111122335666777777777777777


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 015673          118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELL  191 (403)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  191 (403)
                      +.|..-..      .   ...+.++.+..++++...+...+.+      +....-.+..++...|.-++|.+.+
T Consensus       817 ~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe------~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  817 KYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE------DSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc------ccchHHHHHHHHHhhchHHHHHHHH
Confidence            76655422      1   1234445555555555544444433      3333444445555555555554444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.74  E-value=0.0022  Score=58.78  Aligned_cols=61  Identities=16%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      ..|..+.-.+...|++++|...++++...+  |+...|..+..++...|+.++|...+++...
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444433444455555555555554432  3444455555555555555555555555444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00043  Score=56.43  Aligned_cols=96  Identities=18%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673           73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP  152 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  152 (403)
                      .+.+++.+|+..|...+. -.|.+...|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence            345555555555555552 34444445555555555555555555555555553321 3445555555555555555555


Q ss_pred             HHHHHchhhCCCCCchHHHHH
Q 015673          153 ILFDEIPKKYNLSPDKISYGL  173 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~  173 (403)
                      +.|++.+   .+.|+..+|-.
T Consensus       170 ~aykKaL---eldP~Ne~~K~  187 (304)
T KOG0553|consen  170 EAYKKAL---ELDPDNESYKS  187 (304)
T ss_pred             HHHHhhh---ccCCCcHHHHH
Confidence            5555554   34444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.72  E-value=0.00087  Score=55.47  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=71.4

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcC--CCCCCHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKND--PKITQEPYLCN  102 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~  102 (403)
                      .|......+.+.|++++|+..|+.+++..  |..  ...++..+...|...|++++|...|+.+...  ..+.....+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444444466788999999999998888  432  2456677888888889999999888888742  22223445555


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      ++.++...|+.++|..+|+.+.+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            7777878888899988888887754

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.69  E-value=0.03  Score=48.75  Aligned_cols=144  Identities=13%  Similarity=0.149  Sum_probs=83.2

Q ss_pred             HHhhh-cCCChHHHHHHHHHHHHCC-CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcc
Q 015673          244 RITNT-YGGDPERLKELIDEMRDAG-LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTF-RTWIYHLCGS  320 (403)
Q Consensus       244 ll~~~-~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~  320 (403)
                      .+... +....+.|..+|.++.+.+ +.+++..+++++..++ .|+...|..+|+.-...  -||...| ...+..+...
T Consensus       403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~i  479 (660)
T COG5107         403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRI  479 (660)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence            33444 5556667777777776666 4556666676666654 35666777777654443  2333332 3455556666


Q ss_pred             CChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCCC
Q 015673          321 GNFDKAYKVFKESVMVHKIPD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAP  393 (403)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  393 (403)
                      ++-+.|..+|+..+..- ..+  ..+|..++.--..-|+...+..+=++|...+|....  ..-....|++..+.
T Consensus       480 nde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~--~evF~Sry~ik~da  551 (660)
T COG5107         480 NDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL--IEVFTSRYAIKADA  551 (660)
T ss_pred             CcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH--HHHHHHHHhhhccc
Confidence            77777777777554421 112  456777777777777777777777777666554432  22233444554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.67  E-value=0.0013  Score=60.14  Aligned_cols=59  Identities=12%  Similarity=-0.057  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                      .+..+...+...|++++|...++++.+..  |+...|..+...+...|+.++|...+.+..
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333334455555555555554433  344445555555555555555555554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.66  E-value=0.018  Score=46.42  Aligned_cols=189  Identities=11%  Similarity=0.024  Sum_probs=97.5

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+-.-+....+.|++++|.+.|+.+..+.+..+-...+...++.++-+.+++++|+...++....-...+...|...+.
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk  114 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK  114 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence            34444555566778888888888888776632222445555666777777888888887777654333222233444444


Q ss_pred             HHhcc-------CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673          106 SYGQA-------GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus       106 ~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      +++.-       .|...+...|..+..            ++.-|=.+.=...|..-...+...     =...=..+.+.|
T Consensus       115 gLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY  177 (254)
T COG4105         115 GLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA-----LAGHEMAIARYY  177 (254)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            44411       122222222222211            111111111111122111111100     000112455677


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchh---hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTV---TYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      .+.|.+-.|..-++.|.+. .+-+..   .+-.+..+|...|-.++|.+.-.-+...
T Consensus       178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            7888888888888888776 333333   3445566777777777777766655554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.014  Score=46.90  Aligned_cols=131  Identities=10%  Similarity=0.089  Sum_probs=72.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH-----
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL-----  174 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----  174 (403)
                      .+.++.++.-.+.+.-....+..+++...+.++.....|++.-.+.|+.+.|...|+...+. .-..|..+.+.+     
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence            34555666666666666666666666655556666666666666667766666666655433 222222222222     


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          175 LKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ...|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            233444556666666666655542 224444444444444556666666666666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.64  E-value=0.00026  Score=45.17  Aligned_cols=63  Identities=29%  Similarity=0.390  Sum_probs=41.8

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR  244 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (403)
                      .+.|++++|.++|+.+.+. .+-+...+..+..+|.+.|++++|..+++.+...  .|+...+..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            3567777788888777765 3336666677777778888888888877777765  3444444433

...

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.62  E-value=0.00099  Score=51.91  Aligned_cols=87  Identities=10%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             ChhcHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------CChHHHHHH
Q 015673          271 DTISYNFLMTCYCK-----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS----------------GNFDKAYKV  329 (403)
Q Consensus       271 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~  329 (403)
                      +-.+|..++..|.+     .|.++=....+..|.+.|+.-|..+|+.|++.+=+.                .+.+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            44444444444442     234444444455555555555555555555444321                234567888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673          330 FKESVMVHKIPDFNTVKLLVEGLVKKKK  357 (403)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~  357 (403)
                      +++|...|+.||.+++..+++.+.+.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            8888888888888888888888877664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.59  E-value=0.0035  Score=44.78  Aligned_cols=90  Identities=18%  Similarity=0.098  Sum_probs=49.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEENGCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP---DFNTVKLLVEGL  352 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  352 (403)
                      +..++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++..... +.   +......+..++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence            34455566666666666666666654433  2234445556666666666666666665432 11   122222234455


Q ss_pred             HhcCCHHHHHHHHHHH
Q 015673          353 VKKKKIKEAKGVIRTI  368 (403)
Q Consensus       353 ~~~g~~~~a~~~~~~~  368 (403)
                      ...|+.++|.+.+-..
T Consensus        86 ~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            6666666666665444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.0052  Score=48.67  Aligned_cols=208  Identities=14%  Similarity=0.083  Sum_probs=103.2

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..|.....++....++++|...+.++.+..   ..+...| ...      ..++.|.-+.+++..  .+.-...|+....
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~y---Ennrslf-hAA------KayEqaamLake~~k--lsEvvdl~eKAs~   99 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY---ENNRSLF-HAA------KAYEQAAMLAKELSK--LSEVVDLYEKASE   99 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHH---HhcccHH-HHH------HHHHHHHHHHHHHHH--hHHHHHHHHHHHH
Confidence            456677777777888888888777776432   1111111 111      122334444444431  1122234455566


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----CCCchHHHHHHHHHHHhc
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN----LSPDKISYGLLLKSHCDS  181 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~  181 (403)
                      .|..+|.++.|-..+++.-+                ..++-+.++|+++|++...-..    ...-...+....+.+.+.
T Consensus       100 lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            67777777776666665432                1122233344444443321100    001112234444556666


Q ss_pred             CChHHHHHHHHHHHhC-----CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCchHHHHHHHhhhcCCCh
Q 015673          182 GSSDKALELLNEMENK-----GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG---VDLDVAAYNVRITNTYGGDP  253 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~  253 (403)
                      ..+++|-..|.+-...     ....--..|...|-.+.-..|+..|...++.-.+.+   -.-+..+...++.+|..||.
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~  243 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDI  243 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCH
Confidence            6666665555443211     011111234455556666677778887777744332   22345566667777777777


Q ss_pred             HHHHHHHH
Q 015673          254 ERLKELID  261 (403)
Q Consensus       254 ~~a~~~~~  261 (403)
                      +++.+++.
T Consensus       244 E~~~kvl~  251 (308)
T KOG1585|consen  244 EEIKKVLS  251 (308)
T ss_pred             HHHHHHHc
Confidence            66665543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.56  E-value=0.041  Score=47.09  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             HHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673          240 AYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLC  318 (403)
Q Consensus       240 ~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (403)
                      +.+..+..+ ..|+...|.++-.+..    .|+...|...+.+++..++|++-..+...      +-.+.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            334444444 7888888888877664    57888899999999999999887765432      224477888899999


Q ss_pred             ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015673          319 GSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV  364 (403)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  364 (403)
                      +.|+..+|..++.++     ++     ..-+..|.+.|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence            999999999888762     22     3356788899999888655

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.56  E-value=0.014  Score=46.59  Aligned_cols=65  Identities=12%  Similarity=0.094  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      ..+...+..+...|++++|...|+.+...-  .+........++.++.+.|+++.|...+++..+.-
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            334455666677778888888887776421  11222334457777777788888888777776643

>PRK15331 chaperone protein SicA; Provisional

Probab=97.53  E-value=0.011  Score=44.35  Aligned_cols=86  Identities=14%  Similarity=0.090  Sum_probs=42.6

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673          283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK  362 (403)
Q Consensus       283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  362 (403)
                      ...|++++|..+|+-+...+ .-|..-+..|..++-..+++++|+..|......+ ..|+..+.....+|...|+.+.|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence            34555555555555554433 2233344444445555555555555555444333 233333444455555555555555


Q ss_pred             HHHHHHHH
Q 015673          363 GVIRTIKK  370 (403)
Q Consensus       363 ~~~~~~~~  370 (403)
                      ..|+...+
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            55555544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.048  Score=46.72  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHH
Q 015673          205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYC  283 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  283 (403)
                      +.+.-+.-+...|+...|.++-.+.   . -|+...|...+.++ ..+++++...+-..      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            4445566677788888777775554   2 46777888888888 88888877765432      224577888888998


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673          284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE  332 (403)
Q Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  332 (403)
                      +.|+..+|..++..+     +     +..-+..|.+.|++.+|.+...+
T Consensus       249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence            888888888887762     1     13456678888888888776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.52  E-value=0.0032  Score=49.21  Aligned_cols=104  Identities=19%  Similarity=0.322  Sum_probs=66.4

Q ss_pred             CchHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH
Q 015673          166 PDKISYGLLLKSHCD-----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA  240 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  240 (403)
                      .|..+|..++..|.+     .|..+-....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+--         
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------  113 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------  113 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence            466667777766653     35666677777777777887788888877776654 2221 1111111100         


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673          241 YNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM  287 (403)
Q Consensus       241 ~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  287 (403)
                             ....+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus       114 -------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 -------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                   0334556778888888888888888888888888765543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.51  E-value=0.00061  Score=42.97  Aligned_cols=59  Identities=17%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      +...+.+.|++++|...|+.+++.. +-+...+..+..++...|++++|...|+++++..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4556777888888888888888764 3356677777778888888888888888877543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.48  E-value=0.00086  Score=42.87  Aligned_cols=65  Identities=17%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 015673          167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG-NAEEAERLWSEMEKK  232 (403)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~  232 (403)
                      +...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            45567777777777777777777777777763 346667777777777777 577777777776654

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.043  Score=44.25  Aligned_cols=139  Identities=11%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh--
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN--  247 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--  247 (403)
                      .-+.++.++...|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+...+..-..+..+++.++..  
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            346677777777888888888888888766667788888888888888888888888877665444444444443321  


Q ss_pred             ---h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673          248 ---T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR  311 (403)
Q Consensus       248 ---~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  311 (403)
                         + -.+++..|...+.+....+ ..|....|.-.-+..-.|+...|.+.++.|.+.  .|...+-+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence               1 4566666666666666553 224444444444444566777777777777665  34444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0051  Score=50.56  Aligned_cols=116  Identities=12%  Similarity=0.021  Sum_probs=88.8

Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---CcCcHHHHHHHchhhCCCCCch
Q 015673           92 PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR---LYDKVPILFDEIPKKYNLSPDK  168 (403)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~  168 (403)
                      ..|.+..-|..|...|...|+++.|...|.+..+... ++...+..+..++....   ...++..+|+++.+  .-+-|.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~i  227 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANI  227 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccH
Confidence            4667778899999999999999999999999887654 36777777777755432   34568899999986  445567


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNC  212 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  212 (403)
                      .+...+...+...|++.+|...|+.|.+. .+|+ ..+..++..
T Consensus       228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~-~~rr~~ie~  269 (287)
T COG4235         228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD-DPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC-CchHHHHHH
Confidence            77888888999999999999999999987 3333 445555543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.31  E-value=0.045  Score=41.69  Aligned_cols=158  Identities=12%  Similarity=0.017  Sum_probs=101.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      +.....+.=+++...+-..+-.+  ..|+...-..|..++.+.|++.+|...|.+...- -+.-|....-.+.++....+
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~  138 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhc
Confidence            44444445555554443333222  3378888888888899999999999999888652 34456777777888888889


Q ss_pred             ChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH-HHHHHhhhcCCChHHH----
Q 015673          183 SSDKALELLNEMENKGV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAA-YNVRITNTYGGDPERL----  256 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~a----  256 (403)
                      ++..|...++++-+.+. ..++.+...+.+.+...|.+.+|..-|+.....-..|.... |..++.  .+|+..++    
T Consensus       139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La--~qgr~~ea~aq~  216 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLA--KQGRLREANAQY  216 (251)
T ss_pred             cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH--HhcchhHHHHHH
Confidence            99999999888876531 11334455677888888999999999988887633333332 222222  44544443    


Q ss_pred             HHHHHHHHH
Q 015673          257 KELIDEMRD  265 (403)
Q Consensus       257 ~~~~~~~~~  265 (403)
                      .++++.+.+
T Consensus       217 ~~v~d~~~r  225 (251)
T COG4700         217 VAVVDTAKR  225 (251)
T ss_pred             HHHHHHHHh
Confidence            445555544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.30  E-value=0.0016  Score=42.20  Aligned_cols=57  Identities=11%  Similarity=0.045  Sum_probs=36.2

Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      ..|.+.+++++|.++++.++..+ +.++..+.....++.+.|++++|.+.|++..+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            34566666666666666666654 4455666666666666666666666666666533

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.27  E-value=0.11  Score=45.42  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHCCCCCC----HHHHHHHHH--HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015673          288 MDEAKKVYEGLEENGCSPN----ATTFRTWIY--HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA  361 (403)
Q Consensus       288 ~~~A~~~~~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (403)
                      +..-+.+-+-+.+.|++|-    ...-|.+.+  -+...|++.++.-.-..+.+  +.|++.+|..+.-++....++++|
T Consensus       437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence            3444444444556676653    334444443  35678999998877666653  568999999999999999999999


Q ss_pred             HHHHHHHH
Q 015673          362 KGVIRTIK  369 (403)
Q Consensus       362 ~~~~~~~~  369 (403)
                      ..++..+.
T Consensus       515 ~~~l~~LP  522 (549)
T PF07079_consen  515 WEYLQKLP  522 (549)
T ss_pred             HHHHHhCC
Confidence            99997763

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.25  E-value=0.032  Score=41.86  Aligned_cols=94  Identities=9%  Similarity=-0.171  Sum_probs=70.1

Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673          240 AYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG  319 (403)
Q Consensus       240 ~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (403)
                      .|......+..|++++|..+|.-+.-.+ .-+..-+..|..+|-..+++++|...|......+ .-|+..+-....++..
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~  117 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence            3444444448899999999999887764 2356667778888888899999999988766544 2344445567788899


Q ss_pred             cCChHHHHHHHHHHHh
Q 015673          320 SGNFDKAYKVFKESVM  335 (403)
Q Consensus       320 ~~~~~~a~~~~~~~~~  335 (403)
                      .|+.+.|+..|+..++
T Consensus       118 l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        118 MRKAAKARQCFELVNE  133 (165)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            9999999999988876

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.24  E-value=0.012  Score=47.78  Aligned_cols=100  Identities=18%  Similarity=0.088  Sum_probs=76.4

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLI  104 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~  104 (403)
                      .|+. .-.+...|++..|...|...++......-...++..|..++...|++++|..+|..+.+.-  .+.-++.+..|.
T Consensus       144 ~Y~~-A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNA-ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            3544 4445566789999999999999884433456667789999999999999999999886532  222235677788


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCC
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .+..+.|+.++|..+|+++.+.-
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHC
Confidence            88999999999999999988754

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.22  E-value=0.0083  Score=43.35  Aligned_cols=102  Identities=13%  Similarity=0.141  Sum_probs=56.7

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ..++..++.++++.|+++....+++..-.-+  ++...         ..+.         --......|+..++.+++.+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence            4556667777777777776666665543211  11000         0000         01112344777777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCC-chhHHHHHHHHHHhCCCCCC
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFP-PNVLRAWKKVEEELGLVPAP  393 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  393 (403)
                      |+..|++..|.++++.+.+.++ |-....|..|++-.-+....
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~  104 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK  104 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence            7777777777777777776533 22244677777665554443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.22  E-value=0.011  Score=44.39  Aligned_cols=71  Identities=20%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCchHHH
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK-----KGVDLDVAAY  241 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  241 (403)
                      ....++..+...|+++.|..+.+.+... -|.+...|..+|.+|...|+...|.++|+.+.+     .|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4566777788899999999999998887 455788899999999999999999999887743     4666666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.21  E-value=0.12  Score=44.94  Aligned_cols=18  Identities=17%  Similarity=0.200  Sum_probs=10.1

Q ss_pred             cCCChHHHHHHHHHHHHC
Q 015673          249 YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~  266 (403)
                      ..|+.++|.+..+.|.+.
T Consensus       317 L~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  317 LAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HcCCHHHHHHHHHHHhhc
Confidence            555555555555555544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.19  E-value=0.12  Score=44.30  Aligned_cols=59  Identities=10%  Similarity=0.009  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 015673          309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKK-KKIKEAKGVIRTIK  369 (403)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~  369 (403)
                      ....+.++-...|++..|..--+....  ..|....|..|.+.-... |+-.++...+-+..
T Consensus       331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            333444444455555554444443332  234444554444443332 55555555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.16  E-value=0.0046  Score=39.98  Aligned_cols=57  Identities=18%  Similarity=0.154  Sum_probs=43.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      ..|.+.++++.|.++++.+... .+.+...+.....++.+.|++++|...|+...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            4567778888888888888776 33466777777888888888888888888887763

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.16  E-value=0.0054  Score=46.14  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=42.5

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTV  345 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  345 (403)
                      +...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+..+|.+.|+++..     .|+.|++.+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            34455666667777777777777777654 55666777777777777777777777766543     2666666553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.16  E-value=0.0058  Score=44.15  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK  176 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  176 (403)
                      ..++..++.++++.|+.+....+++..=..++....           ..+.          ........|+..+..+++.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~-----------~~~~----------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK-----------KEGD----------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc-----------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence            455667777777777777777766654321111000           0000          1222245566666666666


Q ss_pred             HHHhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHh
Q 015673          177 SHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCLYK  215 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~  215 (403)
                      +|+..|++..|+++++...+. +++.+..+|..|++-+..
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            666666666666666655432 444455566665554433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.15  E-value=0.14  Score=44.39  Aligned_cols=33  Identities=21%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      .+.-.+..++.++.-.|++++|.+..++|.+..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            344444556666677777777777777776543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.15  E-value=0.011  Score=50.54  Aligned_cols=131  Identities=14%  Similarity=-0.015  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHH----CCC-CCCh
Q 015673          204 VTYTTVLNCLYKQGNAEEAERLWSEME----KKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRD----AGL-KPDT  272 (403)
Q Consensus       204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~----~~~-~~~~  272 (403)
                      ..|..|.+.|.-.|+++.|+...+.-+    +.|-... ...+..+-.++ ..|+++.|.+.|+.-..    .|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            345666666667778887776654432    2221111 11222222233 56777777777765432    221 1123


Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEE----NG-CSPNATTFRTWIYHLCGSGNFDKAYKVFKESV  334 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (403)
                      ....+|...|.-..++++|+.++.+-..    .+ ..-....+.+|..++...|..++|+.+.+.-+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3455677777777778888877765321    11 12234566678888888888888877765543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.98  E-value=0.017  Score=49.54  Aligned_cols=122  Identities=12%  Similarity=0.023  Sum_probs=84.5

Q ss_pred             cCCChHHHHHHHHHHH----HCCCC-CChhcHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHH
Q 015673          249 YGGDPERLKELIDEMR----DAGLK-PDTISYNFLMTCYCKNEMMDEAKKVYEGLE----ENGC-SPNATTFRTWIYHLC  318 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~  318 (403)
                      ..|+++.|+...+.-.    +.|-+ .....+..|..++.-.|+++.|.+.|+.-.    +.|- .......-+|...|.
T Consensus       207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt  286 (639)
T KOG1130|consen  207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT  286 (639)
T ss_pred             eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence            7799999987765432    22211 123567778889999999999999988643    3331 122344557788888


Q ss_pred             ccCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          319 GSGNFDKAYKVFKESVMV-----HKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      -..++++|+.++.+=+..     +..-....+.+|..+|...|..++|..+.+.-.+
T Consensus       287 ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  287 LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            888999999887653221     1123456777899999999999999988877654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.97  E-value=0.091  Score=39.56  Aligned_cols=128  Identities=19%  Similarity=0.163  Sum_probs=81.0

Q ss_pred             hhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH-HH--HHHHHHHhc
Q 015673           33 SKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP-YL--CNLIRSYGQ  109 (403)
Q Consensus        33 ~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~  109 (403)
                      -.+.+.+..++|+.-|..+.+.|....+. .+...........|+...|...|.++......|... -.  ..-...+..
T Consensus        66 L~lA~~~k~d~Alaaf~~lektg~g~Ypv-LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          66 LKLAQENKTDDALAAFTDLEKTGYGSYPV-LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHHHcCCchHHHHHHHHHHhcCCCcchH-HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence            34566778888888888888777433222 222344555667788888888888876544433322 11  112334556


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673          110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK  161 (403)
Q Consensus       110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  161 (403)
                      .|.++......+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+...
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            7777777777777665554445555666777777788888888888877654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.03  Score=45.59  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGC--SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPDFNTVKLLV  349 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~  349 (403)
                      .|+.-+..+ +.|++..|...|...++...  .-....+-.|..++...|++++|..+|..+.+.-.  +--++.+..|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            477655554 56779999999999887631  11123455678899999999999999988877521  23457888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCchhH
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKKFPPNVL  377 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~  377 (403)
                      .+..+.|+.++|...|+++.+++|....
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999998886654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.89  E-value=0.013  Score=51.40  Aligned_cols=68  Identities=10%  Similarity=-0.043  Sum_probs=56.6

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcch--hhHHHHHHHHHhcCCcchHHHHHHHhhc
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSR--YAQDLTVRRLAKSKRFSDIETLIESHKN   90 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~   90 (403)
                      .|.....+..+..+|...|++++|+..|++.++.+  |....  .+|..+..+|...|++++|+..+++...
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445678889999999999999999999999988  64332  4578899999999999999999999885

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.87  E-value=0.0047  Score=40.54  Aligned_cols=63  Identities=22%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENK----GV-EVT-TVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      .+++.+...|...|++++|+..|++..+.    |. .|+ ..++..+..++...|++++|++.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45677777777778888877777776532    11 112 45667777777788888888877777654

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.86  E-value=0.0038  Score=41.00  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          309 TFRTWIYHLCGSGNFDKAYKVFKESVMV----HK-IPD-FNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +++.+...|...|++++|+..|++.++.    |- .|+ ..++..+..+|...|++++|.+.+++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555666666666666666555433    10 011 3445556666666666666666666654

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.84  E-value=0.084  Score=48.23  Aligned_cols=192  Identities=14%  Similarity=0.115  Sum_probs=95.9

Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHH-----HHHHHHHhcCChHHHHHHHHH
Q 015673          120 FDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYG-----LLLKSHCDSGSSDKALELLNE  193 (403)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~  193 (403)
                      ++++.+.|-.|+...   +...++-.|.+.+|-++|.+-    |.... ...|+     -..+-+...|..++-..+.++
T Consensus       623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK  695 (1081)
T KOG1538|consen  623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK  695 (1081)
T ss_pred             HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            445566666666543   334456677777887777665    22111 01111     112333444444443333322


Q ss_pred             HHhC--CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCC---CchHHHHHHHhhh-cCCChHHHHHHH
Q 015673          194 MENK--GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSE------MEKKGVD---LDVAAYNVRITNT-YGGDPERLKELI  260 (403)
Q Consensus       194 ~~~~--~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~ll~~~-~~~~~~~a~~~~  260 (403)
                      -.+-  ++ +|     .+....+...|+.++|..+..+      +.+.+.+   .+..+...+...+ +...+..|-++|
T Consensus       696 RA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF  770 (1081)
T KOG1538|consen  696 RADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF  770 (1081)
T ss_pred             HHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence            1110  11 11     1334455567777777655321      1121111   1233333333344 667777888888


Q ss_pred             HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHHccCChHHHHHH
Q 015673          261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATT-----------FRTWIYHLCGSGNFDKAYKV  329 (403)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~  329 (403)
                      .+|-.         ...+++.....++|++|..+-+...+.  .||...           |..--.+|.+.|+-.+|..+
T Consensus       771 ~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v  839 (1081)
T KOG1538|consen  771 LKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV  839 (1081)
T ss_pred             HHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence            87753         234667777888999998888776654  333221           12222345555555555555


Q ss_pred             HHHHH
Q 015673          330 FKESV  334 (403)
Q Consensus       330 ~~~~~  334 (403)
                      ++++.
T Consensus       840 LeQLt  844 (1081)
T KOG1538|consen  840 LEQLT  844 (1081)
T ss_pred             HHHhh
Confidence            55554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.84  E-value=0.036  Score=50.96  Aligned_cols=239  Identities=13%  Similarity=0.092  Sum_probs=135.7

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCcHHHHHHH-------HHHHHhcCCcCcHHHHHHHchhhCCCC
Q 015673           94 ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-GTPRSVISFNAL-------LFACTRSRLYDKVPILFDEIPKKYNLS  165 (403)
Q Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~  165 (403)
                      .|.+..|..+.......-.++.|...|-+.... |++. +.-...+       ...-.--|++++|.++|-.+-++    
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----  763 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----  763 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence            455677877777777777777777777665431 2210 0001111       01112247788888888777443    


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673          166 PDKISYGLLLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR  244 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (403)
                            ...+..+.+.|++-...++++.--.. .-..-...|+.+...++....|+.|.+.+..-...         ...
T Consensus       764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence                  34456677778887777666532110 00112356778888888888888888887664321         112


Q ss_pred             Hhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673          245 ITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF  323 (403)
Q Consensus       245 l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  323 (403)
                      +.++ ...++++.+.+...+     +-+....-.+..++.+.|.-++|.+.+-+.-    .|.     .-+..|...+++
T Consensus       829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW  894 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHH
Confidence            2233 444444444444433     3356677778888888888888887764322    222     334567777778


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          324 DKAYKVFKESVMVHKIPDFNTV--------------KLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+|.++.+...    -|...++              ..-|..+.+.|+.-+|-+++.+|.+
T Consensus       895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence            77777765532    1222221              1124455566666666666666643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.83  E-value=0.0035  Score=35.72  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673          343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE  384 (403)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  384 (403)
                      .++..+...|...|++++|+++++++.+..| ++...|..+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhh
Confidence            4567788888999999999999999888544 4456777654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.16  Score=43.81  Aligned_cols=140  Identities=18%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChH
Q 015673          210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD  289 (403)
Q Consensus       210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  289 (403)
                      .+.|.+.|++..|..-|++....            +.....-+.++.. ....+       -..+++.|.-+|.+.+++.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~------------l~~~~~~~~ee~~-~~~~~-------k~~~~lNlA~c~lKl~~~~  274 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF------------LEYRRSFDEEEQK-KAEAL-------KLACHLNLAACYLKLKEYK  274 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH------------hhccccCCHHHHH-HHHHH-------HHHHhhHHHHHHHhhhhHH
Confidence            45688999999999998887653            0000111111111 11111       2345677888999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 015673          290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIK-EAKGVIRTI  368 (403)
Q Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~  368 (403)
                      .|+......+..+ ++|....-.-.+++...|+++.|+..|+++++.. |.|..+-..++.+-.+..+.. ...++|..|
T Consensus       275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999886 6777777778899999999999999999999765 445555555555555544443 447788888


Q ss_pred             HHh
Q 015673          369 KKK  371 (403)
Q Consensus       369 ~~~  371 (403)
                      -.+
T Consensus       353 F~k  355 (397)
T KOG0543|consen  353 FAK  355 (397)
T ss_pred             hhc
Confidence            654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.78  E-value=0.043  Score=40.16  Aligned_cols=84  Identities=7%  Similarity=-0.004  Sum_probs=52.4

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      +..+..-.....+.|++++|++.|+.+..+-..+.-...+...++.++.+.+++++|...+++..+.........|...+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            34455556666677888888888888877773333355555667778888888888888877776433322223344444


Q ss_pred             HHHh
Q 015673          105 RSYG  108 (403)
Q Consensus       105 ~~~~  108 (403)
                      .+++
T Consensus        90 ~gL~   93 (142)
T PF13512_consen   90 RGLS   93 (142)
T ss_pred             HHHH
Confidence            4443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.77  E-value=0.17  Score=46.26  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCch-----HHHHHHHhhh--c---CCChHHHHHHHHHHHHCCCCCChhc
Q 015673          206 YTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLDV-----AAYNVRITNT--Y---GGDPERLKELIDEMRDAGLKPDTIS  274 (403)
Q Consensus       206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~ll~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~  274 (403)
                      +..++....-.||-+.+++.+....+.+ +....     -.|..++..+  .   ..+.+.|.++++.+.++  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            3456666677899999999998876643 22111     2233333333  2   45778999999999987  677665


Q ss_pred             HHHH-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 015673          275 YNFL-MTCYCKNEMMDEAKKVYEGLEENG--C-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV-  349 (403)
Q Consensus       275 ~~~l-~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-  349 (403)
                      |... .+.+...|++++|++.|+......  . +.....+--+..++.-..++++|.+.|..+.+.. .-+..+|..+. 
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            5433 455678899999999999766321  0 1223345556677888999999999999999865 44555555443 


Q ss_pred             HHHHhcCCH-------HHHHHHHHHHHH
Q 015673          350 EGLVKKKKI-------KEAKGVIRTIKK  370 (403)
Q Consensus       350 ~~~~~~g~~-------~~a~~~~~~~~~  370 (403)
                      .++...|+.       ++|.++|.++..
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            345567877       888999888753

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.70  E-value=0.088  Score=38.56  Aligned_cols=123  Identities=11%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             CchHHHHHHHhhhcCCChHHHHHHHHHHHHCCC--CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673          236 LDVAAYNVRITNTYGGDPERLKELIDEMRDAGL--KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW  313 (403)
Q Consensus       236 ~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  313 (403)
                      |....|+.....+..|+++.|.+.|+.+..+-.  +-....-..|+.+|.+.+++++|...++++++.+..-...-|...
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            445666777777788888888888888877621  112334556788888889999999988888876422222345555


Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673          314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV  376 (403)
Q Consensus       314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  376 (403)
                      +.+++.....+..   +..+.  +..-|...             ...|..-|+++.+++|.+.
T Consensus        89 ~~gL~~~~~~~~~---~~~~~--~~drD~~~-------------~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   89 MRGLSYYEQDEGS---LQSFF--RSDRDPTP-------------ARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHhhhH---Hhhhc--ccccCcHH-------------HHHHHHHHHHHHHHCcCCh
Confidence            5555543332222   22221  11222221             3477777777777776653

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.65  E-value=0.42  Score=42.02  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=98.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcH-HHHHH
Q 015673          203 TVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISY-NFLMT  280 (403)
Q Consensus       203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~  280 (403)
                      ..+|...++...+..-.+.|..+|.++.+.+ +.+++..+++++..+..|+...|..+|+.-...  -||...| +..+.
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            4567777888788888899999999998888 667888888888888889999999999875554  3444433 55666


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673          281 CYCKNEMMDEAKKVYEGLEENGCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       281 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (403)
                      .+...++-+.|..+|+..... +..+  ...|..+|.--..-|+...+..+=+.+...
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            777888999999999865532 1122  457888888888888888888777776653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.64  E-value=0.28  Score=39.82  Aligned_cols=179  Identities=14%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             HHHhcCChHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh---h---
Q 015673          177 SHCDSGSSDKALELLNEMENKG--VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN---T---  248 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~---  248 (403)
                      .-.+.|++++|.+.|+.+....  -+-...+--.++.++.+.++++.|+..+++....-......-|-..|.+   +   
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i  122 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence            3457788888888888887652  1223344555667778888888888888887776433333333333322   2   


Q ss_pred             --cCCChHHH---HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673          249 --YGGDPERL---KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF  323 (403)
Q Consensus       249 --~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  323 (403)
                        ...|...+   ..-|++++.+  -||..             -...|..-+..+...    =...=..+.+.|.+.|.+
T Consensus       123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~  183 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY  183 (254)
T ss_pred             CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence              11333333   3333333333  33322             111222222221110    000112345668888888


Q ss_pred             HHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          324 DKAYKVFKESVMVHKIP---DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..|..-++.|++. .+.   ....+-.+..+|...|..++|...-.-+..+.|.+
T Consensus       184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            8888888888876 232   33556667788888999888888777666544433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.62  E-value=0.04  Score=49.52  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  187 (403)
                      .+.|+.+.|.++.+..      .+...|..|.....+.|+++-|.+.|.+...          +..|+-.|.-.|+.+.-
T Consensus       329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L  392 (443)
T PF04053_consen  329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKL  392 (443)
T ss_dssp             HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHH
T ss_pred             HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHH
Confidence            3455555554443222      2444555555555555555555555555521          34444444555555555


Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      .++.+.....|.      ++....++...|+.++..+++.+
T Consensus       393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            555444444322      23333444444555555544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.56  E-value=0.43  Score=41.12  Aligned_cols=239  Identities=15%  Similarity=0.157  Sum_probs=108.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCCcCcHHHHHHHchhhCCCCCchHH--HHHHHHHHHhcCChH
Q 015673          110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFA--CTRSRLYDKVPILFDEIPKKYNLSPDKIS--YGLLLKSHCDSGSSD  185 (403)
Q Consensus       110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~  185 (403)
                      .|+-..|.++-.+..+. +.-|......|+.+  -.-.|+++.|.+-|+.|...    |....  ...|.-...+.|+.+
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHH
Confidence            45555555554443211 11233333333332  23346666666666666531    11111  122222233556666


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHH--HHHHHhhh----cCCChHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLDVAA--YNVRITNT----YGGDPERLKE  258 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~ll~~~----~~~~~~~a~~  258 (403)
                      .|..+-+..... -+.-...+...+...+..|+|+.|+++++.-.... +.++..-  -..++.+-    ..-+...|..
T Consensus       172 aAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         172 AARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            666666655543 22234555666666666666666666665544332 2222211  11122111    2344555555


Q ss_pred             HHHHHHHCCCCCChhc-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH---H
Q 015673          259 LIDEMRDAGLKPDTIS-YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES---V  334 (403)
Q Consensus       259 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~  334 (403)
                      .-.+..+.  .||..- -..-..++.+.|+..++-.+++.+-+.  .|.+.++...+  ..+.|+.  ++.-+++.   .
T Consensus       251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~  322 (531)
T COG3898         251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGDT--ALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence            55544443  444332 222345566667777777777776665  34433332222  3334432  22222222   1


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015673          335 MVHKIPDFNTVKLLVEGLVKKKKIKEAKG  363 (403)
Q Consensus       335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  363 (403)
                      +.. +.+.+....+..+-...|++..|..
T Consensus       323 slk-~nnaes~~~va~aAlda~e~~~ARa  350 (531)
T COG3898         323 SLK-PNNAESSLAVAEAALDAGEFSAARA  350 (531)
T ss_pred             hcC-ccchHHHHHHHHHHHhccchHHHHH
Confidence            111 2334455555555556666555543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.13  Score=42.40  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL  147 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  147 (403)
                      -.......|++.+|..+|....... +.+......++.+|...|+++.|..++..+....-.........-|..+.+...
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            3455678899999999999887533 333555667899999999999999999988664322222233344666777777


Q ss_pred             cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673          148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK--GVEVTTVTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                      ..+...+-.+.-..   +-|...-..+...+...|+.+.|++.+-.+.+.  |. -|...-..++..+...|.-+.+...
T Consensus       219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp~~~~  294 (304)
T COG3118         219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADPLVLA  294 (304)
T ss_pred             CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCHHHHH
Confidence            77777777776432   336667778888899999999998887776544  33 3566777888888777754444433


Q ss_pred             H
Q 015673          226 W  226 (403)
Q Consensus       226 ~  226 (403)
                      +
T Consensus       295 ~  295 (304)
T COG3118         295 Y  295 (304)
T ss_pred             H
Confidence            3

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.55  E-value=0.4  Score=40.54  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=10.0

Q ss_pred             HHHccCChHHHHHHHHH
Q 015673          316 HLCGSGNFDKAYKVFKE  332 (403)
Q Consensus       316 ~~~~~~~~~~a~~~~~~  332 (403)
                      .+.+.+++++|.+.|+-
T Consensus       255 ~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHhhcCHHHHHHHHHH
Confidence            34455666666666654

It is also involved in sporulation [].

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.53  E-value=0.11  Score=37.22  Aligned_cols=63  Identities=21%  Similarity=0.210  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 015673          135 FNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV  199 (403)
Q Consensus       135 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  199 (403)
                      ....+..+...|.-+.-.++++.+.+  .-.+++...-.+..+|.+.|+..++-+++.++.+.|+
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            33444555556666666666666543  2334555556666666666666666666666666655

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.41  E-value=0.15  Score=46.53  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH------HHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHH
Q 015673           66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEP------YLCNLIRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISF  135 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~  135 (403)
                      ..++....=.|+-+.+++++...........+.      .|...+..++.    ..+.+.|.++++.+.+.-  |+...|
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf  269 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF  269 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence            355666666677777777777665433332222      23444433332    456777888888887743  565555


Q ss_pred             HHH-HHHHHhcCCcCcHHHHHHHchhhCCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHH-
Q 015673          136 NAL-LFACTRSRLYDKVPILFDEIPKKYNL--SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN-  211 (403)
Q Consensus       136 ~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-  211 (403)
                      ... .+.+...|+.++|++.|+.......-  +.....+--+.-++.-.++|++|.+.|..+.+.+ ..+..+|..+.. 
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            433 34466678888888888865431111  1123344556666777889999999999988763 235555554443 


Q ss_pred             HHHhcCCH-------HHHHHHHHHHHHc
Q 015673          212 CLYKQGNA-------EEAERLWSEMEKK  232 (403)
Q Consensus       212 ~~~~~~~~-------~~a~~~~~~~~~~  232 (403)
                      ++...|+.       ++|..+|.++...
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            34456766       8888888877543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.41  E-value=0.27  Score=43.80  Aligned_cols=114  Identities=11%  Similarity=0.053  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 015673          276 NFLMTCYCKNEMMDEAKKVYEGLEENG-CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD-FNTVKLLVEGLV  353 (403)
Q Consensus       276 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~  353 (403)
                      ..+..++-+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+-.+...+.+ ...|+..+-.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            345566667888888888888887542 112334667788888888888888888877644332222 233443322222


Q ss_pred             hcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673          354 KKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  392 (403)
                      ..++.-.+..   .-+++..+....+..++.+|...++.
T Consensus       343 av~d~fs~e~---a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  343 AVGDKFSPEA---ASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             hhccccCchh---hhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            2222110100   01223455556677778887777665

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.46  Score=39.42  Aligned_cols=172  Identities=10%  Similarity=0.015  Sum_probs=111.9

Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                      +..+.....-+...+++++....   +....+ .-.......|++.+|...|+........ +...-..+..+|...|+.
T Consensus       110 VdgF~G~qPesqlr~~ld~~~~~---~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~  184 (304)
T COG3118         110 VDGFQGAQPESQLRQFLDKVLPA---EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDV  184 (304)
T ss_pred             ccccCCCCcHHHHHHHHHHhcCh---HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCCh
Confidence            34443333334455566665421   222233 3444566889999999999999886654 567778889999999999


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      +.|..++..+..+ --.........-|..+.+.....+...+-...-..  +-|...-..+...+...|+.+.|.+.+-.
T Consensus       185 e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~  261 (304)
T COG3118         185 EAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLA  261 (304)
T ss_pred             HHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999998653 11112222233455666666666666666655553  33667777888899999999999988766


Q ss_pred             HHHcC-CCCchHHHHHHHhhh
Q 015673          229 MEKKG-VDLDVAAYNVRITNT  248 (403)
Q Consensus       229 ~~~~~-~~~~~~~~~~ll~~~  248 (403)
                      +.+.+ -.-|...-..++..+
T Consensus       262 ~l~~d~~~~d~~~Rk~lle~f  282 (304)
T COG3118         262 LLRRDRGFEDGEARKTLLELF  282 (304)
T ss_pred             HHHhcccccCcHHHHHHHHHH
Confidence            66542 234555556666666

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.34  E-value=0.54  Score=39.77  Aligned_cols=21  Identities=19%  Similarity=0.007  Sum_probs=16.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 015673          350 EGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ..+.+.+++++|.+.++-..+
T Consensus       254 ~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  254 KKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHhhcCHHHHHHHHHHHHH
Confidence            346678999999999986543

It is also involved in sporulation [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.42  Score=38.42  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCCHHHHH
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLE----ENGCSPNA-TTFRTWIYHLCGSGNFDKAYKVFKESVMVH---KIPDFNTVK  346 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~  346 (403)
                      +....+.+.+...+++|-..+.+-.    +..-.++. ..|...|-.+....++..|.+.+++-.+.+   -+.+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            3344445556666666555444321    11111222 234455555666677888888887744331   134556666


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q 015673          347 LLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~  365 (403)
                      .|+.+| ..|+.+++..++
T Consensus       233 nLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHH
Confidence            777666 567777766554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.29  E-value=0.039  Score=48.57  Aligned_cols=65  Identities=12%  Similarity=0.016  Sum_probs=56.2

Q ss_pred             CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673          270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA----TTFRTWIYHLCGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (403)
                      .+...++.+..+|.+.|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|+..++++++.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35667889999999999999999999998887  4553    35889999999999999999999999875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.077  Score=45.73  Aligned_cols=94  Identities=13%  Similarity=0.055  Sum_probs=70.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHC-----CC---------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673          281 CYCKNEMMDEAKKVYEGLEEN-----GC---------SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK  346 (403)
Q Consensus       281 ~~~~~~~~~~A~~~~~~~~~~-----~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (403)
                      .|.+.|++..|..-|++....     +.         ..-..++..+..++.+.+++..|+...++.+..+ ++|...+.
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy  295 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY  295 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence            455666666666665553321     11         1123466778889999999999999999999887 78888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          347 LLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .=..+|...|+++.|+..|+++.+..|.|
T Consensus       296 RrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            88999999999999999999999844444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.16  E-value=0.13  Score=46.27  Aligned_cols=159  Identities=17%  Similarity=0.183  Sum_probs=97.4

Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                      .+...-.++++++.++.+.-.--+..| ....+.++..+.+.|.++.|+++..+-.            .-.....+.|++
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L  334 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL  334 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence            444556677888766665211011122 4557778888888899998888743321            223456678888


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      +.|.++.++.       .+...|..|.....+.|+++-|.+.|.+...         |..|+-.|.-.|+.+...++.+.
T Consensus       335 ~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  335 DIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence            8888776655       2667899999999999999999988886533         45667778888888888888777


Q ss_pred             HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673          229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE  262 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~  262 (403)
                      ....|-      ++..+.++ ..|+.++..+++.+
T Consensus       399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  399 AEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            766542      23333333 56777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.14  E-value=0.85  Score=40.83  Aligned_cols=166  Identities=13%  Similarity=0.130  Sum_probs=90.1

Q ss_pred             HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673           29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG  108 (403)
Q Consensus        29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (403)
                      ..++...-+..+++.-++.-.++++.+  |. -..+|..+.  --....+.++.+++++..+.+..    .+.       
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~--pd-CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~lg-------  235 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEIN--PD-CADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SLG-------  235 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhh--hh-hhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hhc-------
Confidence            345555556667777777777777766  42 223332222  22344567777777776532111    010       


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH
Q 015673          109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL  188 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  188 (403)
                      +....+..-..++.....+..+-..+-..+..++.+.|+.++|++.++++.+......+......|+.++...+.+.++.
T Consensus       236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence            00000000111122222222233344455666777888888999998888764322224456778888888889999888


Q ss_pred             HHHHHHHhCCCCC-chhhHHHHH
Q 015673          189 ELLNEMENKGVEV-TTVTYTTVL  210 (403)
Q Consensus       189 ~~~~~~~~~~~~~-~~~~~~~ll  210 (403)
                      .++.+-.+...+. -...|+..+
T Consensus       316 ~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  316 ALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHhccccCCchHHHHHHHHH
Confidence            8888875543322 233455444

The molecular function of this protein is uncertain.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.12  E-value=0.37  Score=35.79  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=17.7

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ  109 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (403)
                      ++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~   53 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence            3444444444444444444444332 2333344444444443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.06  E-value=1.1  Score=40.90  Aligned_cols=103  Identities=12%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE  350 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (403)
                      +..+|..-+..-...|+++...-+|+...-. +..-...|-..+.-....|+.+-|..++....+...+..+.+...-..
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            3456777777777888888888888876531 111233455555555566888888887777666554444444333333


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          351 GLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..-..|+++.|..+++.+.+.. |+
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~-pg  398 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEY-PG  398 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhC-Cc
Confidence            4445678888888888888766 54

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.05  E-value=0.54  Score=37.06  Aligned_cols=178  Identities=13%  Similarity=0.050  Sum_probs=100.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673          203 TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY  282 (403)
Q Consensus       203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  282 (403)
                      +.+||.+.--+...|+++.|.+.|+...+....-+-...|..+..+..|++..|.+-+...-+.+ +.|+  |.+|--..
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWLYl  175 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRSLWLYL  175 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHHHHHHH
Confidence            46677777777888999999999998888765555555666666668888888888777776653 2122  22222111


Q ss_pred             H-hcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC------CCCHHHHHHHHHHHHh
Q 015673          283 C-KNEMMDEAKKVYE-GLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK------IPDFNTVKLLVEGLVK  354 (403)
Q Consensus       283 ~-~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~  354 (403)
                      . +.-+..+|..-+. +..    ..|..-|...|..|.- |++. ...+++.+....-      ..-.+||..+..-+..
T Consensus       176 ~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~  249 (297)
T COG4785         176 NEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS  249 (297)
T ss_pred             HHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence            1 2335555554433 333    2344445444433322 1111 1112233222110      0124577778888889


Q ss_pred             cCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCC
Q 015673          355 KKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGL  389 (403)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  389 (403)
                      .|+.++|..+|+-......-+.+..--++++...+
T Consensus       250 ~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l  284 (297)
T COG4785         250 LGDLDEATALFKLAVANNVYNFVEHRYALLELSLL  284 (297)
T ss_pred             cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            99999999999887764333333333344443333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.95  E-value=0.21  Score=35.69  Aligned_cols=93  Identities=16%  Similarity=0.063  Sum_probs=64.5

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH---HHHHHHHHHh
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP---YLCNLIRSYG  108 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~  108 (403)
                      .-+++..|+.+.|++.|.+.+..-  |. ...+|+.-.+++.-+|+.++|.+-+++...-..+....   .|..-...|-
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~--P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA--PE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc--cc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            456777888888888888887766  33 55677888888888888888888877776533333322   2344445566


Q ss_pred             ccCCHHHHHHHHHHHHhCC
Q 015673          109 QAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~  127 (403)
                      ..|+-+.|..-|+..-+.|
T Consensus       127 l~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HhCchHHHHHhHHHHHHhC
Confidence            6788888888787776655

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.91  E-value=0.38  Score=40.82  Aligned_cols=132  Identities=17%  Similarity=0.295  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhCCCCCchhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCchHHHHHHHhhhcCCC---
Q 015673          185 DKALELLNEMENKGVEVTTVTYTTVLNCLYK--QG----NAEEAERLWSEMEKKGV---DLDVAAYNVRITNTYGGD---  252 (403)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~---  252 (403)
                      ++.+.+++.|.+.|+..+..+|-+..-....  ..    ....+..+++.|.+...   .++...+..++..- .++   
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~-~~~~e~  157 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMT-SEDVEE  157 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcc-cccHHH
Confidence            3456677777777777766666553333322  12    24567788888877642   23445555554432 222   


Q ss_pred             -hHHHHHHHHHHHHCCCCCChh--cHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015673          253 -PERLKELIDEMRDAGLKPDTI--SYNFLMTCYCKNEM--MDEAKKVYEGLEENGCSPNATTFRTWIYHL  317 (403)
Q Consensus       253 -~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (403)
                       .+.++.+|+.+.+.|+..+-.  ....++..+....+  ...+..+++.+.+.|+++....|..+.-..
T Consensus       158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence             356677777777766654332  22222222221111  446778888888888888777776655433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=0.93  Score=43.15  Aligned_cols=187  Identities=13%  Similarity=0.032  Sum_probs=125.4

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      ....+.+....+..+.+...++-|+.+-+.   .+..+............-+.+.|++++|...|-+...  ...+    
T Consensus       330 ~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~----  400 (933)
T KOG2114|consen  330 HELIEKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP----  400 (933)
T ss_pred             eeeeeccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh----
Confidence            344455677788888898899999887543   3322322333334445666788999999998887763  2221    


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..+|.-|.......+-...++.+.+.|.. +...-..|+.+|.+.++.++..++.+... . |..  ..-....+..+.+
T Consensus       401 s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~  475 (933)
T KOG2114|consen  401 SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRK  475 (933)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHH
Confidence            23666677777788888888999998885 77778889999999999988887777664 2 321  1123456667777


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                      .+-.++|.-+-.+...     +......+   +-..+++++|++.+..+
T Consensus       476 snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  476 SNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             hChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            7777777666554433     23333333   34567899999888775

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.43  Score=40.23  Aligned_cols=154  Identities=13%  Similarity=0.091  Sum_probs=106.4

Q ss_pred             HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhH----HHHHHHHHhcC
Q 015673          142 CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY----TTVLNCLYKQG  217 (403)
Q Consensus       142 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~  217 (403)
                      ..-.|+..+|...++++.+  ..|.|...+.-.=.+|.-.|+.+.....++++... ..+|...|    ..+.-++...|
T Consensus       113 ~~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             hhccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence            3457888999999999987  66778888888889999999999999999988765 23343222    33344556789


Q ss_pred             CHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC---CChhcHHHHHHHHHhcCChHHHHH
Q 015673          218 NAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLK---PDTISYNFLMTCYCKNEMMDEAKK  293 (403)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~  293 (403)
                      -+++|.+.-++..+.+ +.|.-.-......+ -.|++.++.++..+-...--.   .-...|-...-.+...+.++.|+.
T Consensus       190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            9999999998888763 22333444444444 778899988887655432100   011233444555667799999999


Q ss_pred             HHHHHH
Q 015673          294 VYEGLE  299 (403)
Q Consensus       294 ~~~~~~  299 (403)
                      +|+.-+
T Consensus       269 IyD~ei  274 (491)
T KOG2610|consen  269 IYDREI  274 (491)
T ss_pred             HHHHHH
Confidence            998744

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.68  E-value=0.044  Score=31.09  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=17.4

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 015673          310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTV  345 (403)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  345 (403)
                      +..+...|...|++++|+++|+++++.. +.++..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~   38 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAW   38 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHH
Confidence            4444555555555555555555555543 3333333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.63  E-value=0.82  Score=36.12  Aligned_cols=65  Identities=20%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673           95 TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK  160 (403)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  160 (403)
                      .-+.+||-|.--+...|+++.|.+.|+...+.++.-+-...|.=|. +.-.|+++.|.+-+.+.-+
T Consensus        97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence            3445677777777788888888888888877654422222232222 3345777777766655544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.61  E-value=0.64  Score=42.86  Aligned_cols=199  Identities=10%  Similarity=0.041  Sum_probs=110.1

Q ss_pred             hhhccCCCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhH-----HHHHHHHHhcCCcchHHHH
Q 015673           10 LCTATTAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQ-----DLTVRRLAKSKRFSDIETL   84 (403)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-----~~l~~~~~~~~~~~~a~~~   84 (403)
                      .+........+..|+..   .+...++-.|.+.+|.++|.+--..+  .  ....|     .-.++-+...|.-++-..+
T Consensus       620 i~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en--R--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL  692 (1081)
T KOG1538|consen  620 ISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN--R--ALEMYTDLRMFDYAQEFLGSGDPKEKKML  692 (1081)
T ss_pred             HHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh--h--HHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence            33333333444444443   23456677788888888886653322  0  00111     1123334444544444433


Q ss_pred             HHHhhc---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHH------HHHhCCCCC---cHHHHHHHHHHHHhcCCcCcHH
Q 015673           85 IESHKN---DPKITQEPYLCNLIRSYGQAGMFDHAMRTFD------QMDELGTPR---SVISFNALLFACTRSRLYDKVP  152 (403)
Q Consensus        85 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~  152 (403)
                      .++-..   ....|     ......+...|+.++|..+.-      .+.+.+-+.   +..+...+..-+.+...+..|-
T Consensus       693 ~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa  767 (1081)
T KOG1538|consen  693 IRKRADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA  767 (1081)
T ss_pred             HHHHHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence            333211   11111     224455566788777766532      122222222   3444555555566677788899


Q ss_pred             HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-----------hhHHHHHHHHHhcCCHHH
Q 015673          153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTT-----------VTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~ll~~~~~~~~~~~  221 (403)
                      ++|..|-.          ...+++.....++|++|+.+-+...+.  .||+           .-|...-.+|.+.|+-.+
T Consensus       768 eIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E  835 (1081)
T KOG1538|consen  768 EIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE  835 (1081)
T ss_pred             HHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence            99988842          256778888999999999998887653  2332           223444567778888888


Q ss_pred             HHHHHHHHHHc
Q 015673          222 AERLWSEMEKK  232 (403)
Q Consensus       222 a~~~~~~~~~~  232 (403)
                      |.++++++...
T Consensus       836 A~~vLeQLtnn  846 (1081)
T KOG1538|consen  836 AVQVLEQLTNN  846 (1081)
T ss_pred             HHHHHHHhhhh
Confidence            88888777554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.59  E-value=1.5  Score=38.60  Aligned_cols=65  Identities=14%  Similarity=0.049  Sum_probs=43.7

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP---NATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      ...+|..++..+.+.|.++.|...+..+...+...   .+.........+...|+..+|+..++..+.
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567777788888888888888888777543111   233444455667777888888887777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.58  E-value=0.99  Score=36.52  Aligned_cols=87  Identities=11%  Similarity=0.094  Sum_probs=43.0

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015673          282 YCKNEMMDEAKKVYEGLEENGCSP-NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKE  360 (403)
Q Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  360 (403)
                      +...++.+.+...+....... .. ....+..+...+...++++.|...+....... +.....+..+...+...+..++
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  254 (291)
T COG0457         177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEE  254 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHH
Confidence            444555555555555555442 11 23445555555555556666666665555432 1112333333333334455566


Q ss_pred             HHHHHHHHHH
Q 015673          361 AKGVIRTIKK  370 (403)
Q Consensus       361 a~~~~~~~~~  370 (403)
                      +...+.+..+
T Consensus       255 ~~~~~~~~~~  264 (291)
T COG0457         255 ALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHH
Confidence            6665555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.49  E-value=0.43  Score=45.22  Aligned_cols=176  Identities=14%  Similarity=0.130  Sum_probs=99.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH----HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL----LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL  175 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  175 (403)
                      ...-+..+.+...++-|+.+-+.-.     .+..+...+    ..-+.+.|++++|...|-+.+.  -+.|     ..+|
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi  404 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEVI  404 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHH
Confidence            3445566666777777766644332     233333333    3345667888888887777653  2222     2345


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE  254 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~  254 (403)
                      .-|.....+..-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|..  ..-....+..+ ..+-.+
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~  480 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD  480 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence            5566666677777788888888774 55666788888888888887766665543 2211  01122333333 344444


Q ss_pred             HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      +|..+-.....     +......++   -..+++++|++.+..+.
T Consensus       481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence            44444333321     333333333   35677888888776543

>PRK11906 transcriptional regulator; Provisional

Probab=95.48  E-value=0.74  Score=40.98  Aligned_cols=148  Identities=9%  Similarity=-0.000  Sum_probs=80.8

Q ss_pred             ChHHHHHHHHHhh---hccCCCCcchhhHHHHHHHHHhc---------CCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           40 DPDKALDIYSSVS---KHYASPVSSRYAQDLTVRRLAKS---------KRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        40 ~~~~A~~~~~~~~---~~~~~p~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      ..+.|+.+|.++.   ..+  |. ...+|..+..++...         ....+|.++-+.... -.+.+......+..+.
T Consensus       273 ~~~~Al~lf~ra~~~~~ld--p~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve-ld~~Da~a~~~~g~~~  348 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQ--TL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD-ITTVDGKILAIMGLIT  348 (458)
T ss_pred             HHHHHHHHHHHHhhcccCC--cc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence            3467888899998   544  43 444554444333222         223345555555553 3445555555566666


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  187 (403)
                      ...++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+-.....-.......+..|+.. ..+.|
T Consensus       349 ~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~  426 (458)
T PRK11906        349 GLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN  426 (458)
T ss_pred             HhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence            6667777888888877775532 344555555555667777777777777553211111222333334445443 35556


Q ss_pred             HHHHHH
Q 015673          188 LELLNE  193 (403)
Q Consensus       188 ~~~~~~  193 (403)
                      .+++-+
T Consensus       427 ~~~~~~  432 (458)
T PRK11906        427 IKLYYK  432 (458)
T ss_pred             HHHHhh
Confidence            655543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.42  E-value=0.65  Score=33.41  Aligned_cols=62  Identities=27%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      ....+......|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            344445555555555555555555442 23455555555666666666666666666655554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.38  E-value=0.66  Score=33.28  Aligned_cols=52  Identities=25%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      ...|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|+.=+++..+
T Consensus        54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            3444444444444444443 222344444444444444444444444444443

>PRK11906 transcriptional regulator; Provisional

Probab=95.15  E-value=1.1  Score=39.92  Aligned_cols=159  Identities=11%  Similarity=0.085  Sum_probs=99.1

Q ss_pred             hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCchHHHHHHHhhh---c--------CCChHHHHHHHHHHH
Q 015673          204 VTY--TTVLNCLYKQ-----GNAEEAERLWSEMEK-KGVDLDVAAYNVRITNT---Y--------GGDPERLKELIDEMR  264 (403)
Q Consensus       204 ~~~--~~ll~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~---~--------~~~~~~a~~~~~~~~  264 (403)
                      ..|  ..++.+....     ...+.|..+|.+... +...|+-..-...+..+   .        ..+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5555555442     235678888888872 22355533222222221   1        234456677777777


Q ss_pred             HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-
Q 015673          265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF-  342 (403)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  342 (403)
                      +.+ +.|......+..+..-.++++.|..+|+.....  .|| ..+|......+.-.|+.++|.+.+++..+..  |.. 
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~  406 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRR  406 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhh
Confidence            775 447777777777777788899999999988876  444 4456666666777899999999998877543  332 


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          343 --NTVKLLVEGLVKKKKIKEAKGVIRTI  368 (403)
Q Consensus       343 --~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (403)
                        ......++.|+..+ .++|++++-+-
T Consensus       407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~  433 (458)
T PRK11906        407 KAVVIKECVDMYVPNP-LKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence              33344455666555 56777776544

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.13  E-value=0.23  Score=40.68  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             CCchhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhc
Q 015673          200 EVTTVTYTTVLNCLYK-----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTIS  274 (403)
Q Consensus       200 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  274 (403)
                      +.|..+|...+..+..     .+.++-....++.|.+.|+.-|..+|+.++..+-.|.               +.|. ..
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk---------------fiP~-nv  127 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK---------------FIPQ-NV  127 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc---------------cccH-HH
Confidence            3466667666666643     3456666667777777777777777777776552121               1111 11


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN  322 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  322 (403)
                      +....-.|-+.  -+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus       128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            22222222222  23467788888888888888888888888877654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.13  E-value=0.25  Score=40.54  Aligned_cols=46  Identities=20%  Similarity=0.188  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 015673          324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVIRTIK  369 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~  369 (403)
                      +=+++++++|...|+.||.++-..|++++.+.+-. .+..++.--|.
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            45789999999999999999999999999988763 33334333343

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.07  E-value=2.7  Score=38.59  Aligned_cols=352  Identities=11%  Similarity=0.034  Sum_probs=167.4

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHH-HHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTV-RRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNL  103 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l  103 (403)
                      -|......=.+.|..+.+.++|++.+..-  | .+...|.... ......|+.+...+.|+......  .-.+...|...
T Consensus        81 yW~kfA~~E~klg~~~~s~~Vfergv~ai--p-~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky  157 (577)
T KOG1258|consen   81 YWKKFADYEYKLGNAENSVKVFERGVQAI--P-LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY  157 (577)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhh--h-hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence            34444555566788888888888887755  3 2444443333 33335567777777888776432  23445667778


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH---hc------CCcCcHHHHHHHchh--------------
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT---RS------RLYDKVPILFDEIPK--------------  160 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~a~~~~~~~~~--------------  160 (403)
                      |..-...+++.....+|+++++.    ...-++....-|.   ..      ...+++.++-....+              
T Consensus       158 ie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~  233 (577)
T KOG1258|consen  158 IEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL  233 (577)
T ss_pred             HHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence            88777888888888888888773    1222222211111   11      112222222111111              


Q ss_pred             -----hCCCCCchHH--HHHHH-------HHHHhcCChHHHHHHHHHHHhC---CC----CCchhhHHHHHHHHHhcCCH
Q 015673          161 -----KYNLSPDKIS--YGLLL-------KSHCDSGSSDKALELLNEMENK---GV----EVTTVTYTTVLNCLYKQGNA  219 (403)
Q Consensus       161 -----~~~~~~~~~~--~~~l~-------~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~  219 (403)
                           ..+.+.+..+  .+.+-       .++...-........|+.-...   .+    +++..+|...+..-...|+.
T Consensus       234 ~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~  313 (577)
T KOG1258|consen  234 EIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF  313 (577)
T ss_pred             HHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence                 0000001000  11111       1111111122222222222221   01    22445677777777777888


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      +.+.-.|+...-.--.-+...++-+...-..|+.+.+..++....+-.++-.+.+--.-....-..|+++.|..+++.+.
T Consensus       314 ~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~  393 (577)
T KOG1258|consen  314 SRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE  393 (577)
T ss_pred             HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            88777777764321111222222222222447777777666665554332222211111122234567777877777777


Q ss_pred             HCCCCCCHH-HHHHHHHHHHccCChHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 015673          300 ENGCSPNAT-TFRTWIYHLCGSGNFDKAY---KVFKESVMVHKIPDFNTVKLLVEG-----LVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       300 ~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~  370 (403)
                      +.-  |+.. .-..-+....+.|+.+.+.   .++....+ | +-+..+...+.--     +.-.++.+.|..++.++.+
T Consensus       394 ~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~  469 (577)
T KOG1258|consen  394 SEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEAND  469 (577)
T ss_pred             hhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            652  4432 2222233445566666665   33322221 2 2222222222222     2235667777777777776


Q ss_pred             hCCchhHHHHHHHHHHhCCC
Q 015673          371 KFPPNVLRAWKKVEEELGLV  390 (403)
Q Consensus       371 ~~~~~~~~~~~~l~~~~~~~  390 (403)
                      ..+++.. .|..+..-.-..
T Consensus       470 ~~~~~k~-~~~~~~~~~~~~  488 (577)
T KOG1258|consen  470 ILPDCKV-LYLELIRFELIQ  488 (577)
T ss_pred             cCCccHH-HHHHHHHHHHhC
Confidence            5554433 555555444333

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.03  E-value=1.1  Score=34.05  Aligned_cols=99  Identities=11%  Similarity=0.172  Sum_probs=48.9

Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcC---CChHHHHHHHHHHH
Q 015673          188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG---GDPERLKELIDEMR  264 (403)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~a~~~~~~~~  264 (403)
                      .++++.+.+.+++|+...+..+++.+.+.|++....+    +...++-+|.......+-.+..   .-.+.|.+++.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            3445555566677777777777777777776554433    3333444444433333322211   11222233333222


Q ss_pred             HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGL  298 (403)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  298 (403)
                      .        .+..++..+...|++-+|.++.+..
T Consensus        90 ~--------~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   90 T--------AYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            1        2344555566666666666666553

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.90  E-value=3.9  Score=39.55  Aligned_cols=227  Identities=11%  Similarity=0.007  Sum_probs=117.2

Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcH-------HHHHHHHHH-HHhcCCcCcHHHHHHHchhhC---CCCCchHHHHHH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSV-------ISFNALLFA-CTRSRLYDKVPILFDEIPKKY---NLSPDKISYGLL  174 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l  174 (403)
                      ......++++|..++.++...-..|+.       ..|+.|-.. ....|+++++.++.+......   ...+....+..+
T Consensus       424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            344567899999888887553222221       133333222 345678888888877765521   122345566777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHH-----HHHHhcCCH--HHHHHHHHHHHHcC---CC---CchHHH
Q 015673          175 LKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVL-----NCLYKQGNA--EEAERLWSEMEKKG---VD---LDVAAY  241 (403)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~  241 (403)
                      ..+..-.|+++.|..+.....+....-+...+....     ..+...|+.  .+....|.......   ..   +-..+.
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            788888999999998887766543233433333222     234556633  23333333332221   01   112223


Q ss_pred             HHHHhhh-c-CCChHHHHHHHHHHHHCCCCCChhc--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHH
Q 015673          242 NVRITNT-Y-GGDPERLKELIDEMRDAGLKPDTIS--YNFLMTCYCKNEMMDEAKKVYEGLEENGCSP----NATTFRTW  313 (403)
Q Consensus       242 ~~ll~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l  313 (403)
                      ..++.+. + .+...++..-+.-.......|-...  +..|+......|+.++|...+.++......+    +..+-...
T Consensus       584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~  663 (894)
T COG2909         584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK  663 (894)
T ss_pred             HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            3333333 2 1222222222222222211221122  2367788888999999999998887543222    22222222


Q ss_pred             HH--HHHccCChHHHHHHHHH
Q 015673          314 IY--HLCGSGNFDKAYKVFKE  332 (403)
Q Consensus       314 ~~--~~~~~~~~~~a~~~~~~  332 (403)
                      +.  .....|+...+.....+
T Consensus       664 v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         664 VKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hhHHHhcccCCHHHHHHHHHh
Confidence            22  23456777777766655

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=1  Score=38.12  Aligned_cols=151  Identities=9%  Similarity=-0.024  Sum_probs=79.9

Q ss_pred             hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHH----HHHHHHHHhcCCcC
Q 015673           74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISF----NALLFACTRSRLYD  149 (403)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~  149 (403)
                      ..|++.+|-..++++.+ ..|.+--.+...-++|...|+.+.-...++++... ..+|...|    ..+.-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            45666666666666662 44444445555556666667766666666666542 11233222    23333455667777


Q ss_pred             cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673          150 KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE---VTTVTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       150 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      +|++.-++..+  -.+-|.....++...+.-.|++.++.++..+-...--.   .-.+.|=-..-.+...+.++.|+.+|
T Consensus       193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            77776666654  22335555666666666667777776665543322000   00111212223344556777777777


Q ss_pred             HH
Q 015673          227 SE  228 (403)
Q Consensus       227 ~~  228 (403)
                      +.
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            54

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.89  E-value=0.4  Score=39.87  Aligned_cols=78  Identities=13%  Similarity=0.031  Sum_probs=58.8

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTVKL  347 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  347 (403)
                      .++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|.+.+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            456677778888888888888888888765 66777888888888888888888888877655     367777776665


Q ss_pred             HHHH
Q 015673          348 LVEG  351 (403)
Q Consensus       348 l~~~  351 (403)
                      +...
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5555

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.72  E-value=0.45  Score=36.96  Aligned_cols=63  Identities=14%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT--TVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      ..+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+++.....+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3456666677777777777777777666533322  23445566666666777776666665544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.62  E-value=1.3  Score=32.80  Aligned_cols=40  Identities=5%  Similarity=0.011  Sum_probs=16.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 015673          174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLY  214 (403)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  214 (403)
                      ++..+...+.+.....+++.+...+. .+....+.++..|+
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~   52 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA   52 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence            33333334444444444444443331 23334444444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.54  E-value=4.6  Score=38.68  Aligned_cols=186  Identities=17%  Similarity=0.142  Sum_probs=106.6

Q ss_pred             HHHHHHHHhh-hccCCCCcchhhHHHHHHHHH-hcCCcchHHHHHHHhhcCCCCCCHH---H--HHHHHHHHhccCCHHH
Q 015673           43 KALDIYSSVS-KHYASPVSSRYAQDLTVRRLA-KSKRFSDIETLIESHKNDPKITQEP---Y--LCNLIRSYGQAGMFDH  115 (403)
Q Consensus        43 ~A~~~~~~~~-~~~~~p~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~---~--~~~l~~~~~~~~~~~~  115 (403)
                      .|+..++.+. +....|.....++..++..+. ...+++.|+..+++.......++-.   .  -..++..+.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            3566666666 444444445555566677666 6688999999999875322222211   1  123566666666555 


Q ss_pred             HHHHHHHHHhCCC----CCcHHHHHHH-HHHHHhcCCcCcHHHHHHHchhhCC--CCCchHHHHHHHHHHH--hcCChHH
Q 015673          116 AMRTFDQMDELGT----PRSVISFNAL-LFACTRSRLYDKVPILFDEIPKKYN--LSPDKISYGLLLKSHC--DSGSSDK  186 (403)
Q Consensus       116 A~~~~~~~~~~~~----~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~  186 (403)
                      |...+++..+.--    .+-...|..+ +..+...+++..|.+.++.+.....  ..|-...+..++.+..  +.+..++
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD  197 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence            8888887655221    1222333333 2333334788889998888865432  2233344444444433  4566777


Q ss_pred             HHHHHHHHHhCC---------CCCchhhHHHHHHHHH--hcCCHHHHHHHHHHH
Q 015673          187 ALELLNEMENKG---------VEVTTVTYTTVLNCLY--KQGNAEEAERLWSEM  229 (403)
Q Consensus       187 a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~  229 (403)
                      +.+.++.+....         ..|...+|..+++.++  ..|+++.+...++++
T Consensus       198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777763321         1345566777766554  567766766665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.52  E-value=2.8  Score=36.07  Aligned_cols=121  Identities=9%  Similarity=-0.034  Sum_probs=62.0

Q ss_pred             cCCChHHHHHHHHHHHHCCC-----CCChhcHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHH-----HHH
Q 015673          249 YGGDPERLKELIDEMRDAGL-----KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEE----NGCSPNATTFR-----TWI  314 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~-----~l~  314 (403)
                      ..+.++++++.|+...+.-.     -....++..|...|.+..|+++|.-+..+..+    .++..-...|.     .|.
T Consensus       134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma  213 (518)
T KOG1941|consen  134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA  213 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence            44555555555555433210     11234566667777777777777665554432    22211111222     233


Q ss_pred             HHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          315 YHLCGSGNFDKAYKVFKESVMV----HKIP-DFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      .++...|+.-.|.+.-++..+.    |-.+ .......+.+.|...|+.+.|..-++...
T Consensus       214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            4556666666666666554432    3222 22334556667777777777666665543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=94.52  E-value=0.97  Score=30.80  Aligned_cols=65  Identities=9%  Similarity=0.099  Sum_probs=40.2

Q ss_pred             HHHHHHHHccCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          311 RTWIYHLCGSGNFD--KAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       311 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..--..|....+.+  +..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.+..+.
T Consensus        12 ~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~   78 (108)
T PF02284_consen   12 DARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK   78 (108)
T ss_dssp             HHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh
Confidence            33333444434333  566667777777778888888888888888888888888888887664443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.51  E-value=0.055  Score=28.66  Aligned_cols=32  Identities=13%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673          330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK  362 (403)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  362 (403)
                      |++.++.. |.++..|..+...|...|++++|+
T Consensus         2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444444 556667777777777777776664

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.46  E-value=0.0047  Score=46.30  Aligned_cols=132  Identities=14%  Similarity=0.210  Sum_probs=88.0

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      ...++..+.+.+.+.....+++.+...+  +..+....+.++..|++.++.+...++++...   .    .-...++..|
T Consensus        10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~----yd~~~~~~~c   80 (143)
T PF00637_consen   10 ISEVISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N----YDLDKALRLC   80 (143)
T ss_dssp             SCCCHHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S----S-CTHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHccccc---c----cCHHHHHHHH
Confidence            3456788888899999999999998766  34456777889999999988888877776322   1    1124577778


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS  184 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (403)
                      .+.|.+++|.-++.++-...-.         +..+...++++.|.+...+.       ++...|..++..|...+..
T Consensus        81 ~~~~l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~~-------~~~~l~~~l~~~~l~~~~~  141 (143)
T PF00637_consen   81 EKHGLYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKKV-------DDPELWEQLLKYCLDSKPF  141 (143)
T ss_dssp             HTTTSHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGGC-------SSSHHHHHHHHHHCTSTCT
T ss_pred             HhcchHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCcc
Confidence            8888888888877765432111         11244556777777444443       3577788888888766543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.41  E-value=1.9  Score=36.97  Aligned_cols=166  Identities=11%  Similarity=-0.004  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCchhh
Q 015673          134 SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD---KISYGLLLKSHCDSGSSDKALELLNEMENKGV-----EVTTVT  205 (403)
Q Consensus       134 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~  205 (403)
                      +|..+..++-+.-++.+++.+-+.-....|..|.   -....++..++...+.++++++.|+...+...     .....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            3444444555555555555554444332233331   12334566777777888888888887754311     123456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCchHHHHH-----HHhhh-cCCChHHHHHHHHHHH----HCCCCC-
Q 015673          206 YTTVLNCLYKQGNAEEAERLWSEMEKK----GVDLDVAAYNV-----RITNT-YGGDPERLKELIDEMR----DAGLKP-  270 (403)
Q Consensus       206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~-----ll~~~-~~~~~~~a~~~~~~~~----~~~~~~-  270 (403)
                      +..|...|.+..|+++|.-...+..+.    ++..-..-|..     +..++ ..|....|.+.-++..    ..|-++ 
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            778888888888988887766554332    22211112221     22233 5566666666665543    334222 


Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      -......+.+.|...|+.+.|+.-|+...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            12344567788889999999888777643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.36  E-value=0.32  Score=37.79  Aligned_cols=98  Identities=11%  Similarity=0.021  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC---CcHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQE--PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP---RSVISFNA  137 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~  137 (403)
                      ..+..++..|.+.|+.+.|.+.|.++......+..  ..+..+|+.....+++..+...+.++...--.   .+...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            44556667777777777777777776543322222  23455666666677777776666655432111   11111111


Q ss_pred             HHHH--HHhcCCcCcHHHHHHHchh
Q 015673          138 LLFA--CTRSRLYDKVPILFDEIPK  160 (403)
Q Consensus       138 ll~~--~~~~~~~~~a~~~~~~~~~  160 (403)
                      ...+  +...+++..|-+.|-....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            1111  3345677777766666644

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.21  E-value=0.57  Score=31.49  Aligned_cols=49  Identities=10%  Similarity=0.112  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      =++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++.+.
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~   72 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC   72 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence            3555556666666666777777777777777777777777777666443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.14  E-value=0.13  Score=26.73  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          345 VKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      +..+..++.+.|++++|.+.|+++.+.+|.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            345677788888888888888888877764

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.14  E-value=0.97  Score=37.70  Aligned_cols=79  Identities=14%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh----hCCCCCchHHHHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK----KYNLSPDKISYGL  173 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~  173 (403)
                      .++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+    ..|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34566777777888888888888888776654 777788888888888888888877777643    3467777777666


Q ss_pred             HHHH
Q 015673          174 LLKS  177 (403)
Q Consensus       174 l~~~  177 (403)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.13  E-value=2.5  Score=34.05  Aligned_cols=223  Identities=18%  Similarity=0.112  Sum_probs=125.4

Q ss_pred             CCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHH
Q 015673          111 GMFDHAMRTFDQMDELGTP-RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALE  189 (403)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  189 (403)
                      +....+...+......... .....+......+...+.+..+...+...............+......+...+++..+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444444444444443221 123455555555666666666666655554210122334445555566666666777777


Q ss_pred             HHHHHHhCCCCCchhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCC--CchHHHHHHHhhh-cCCChHHHHHHHHHHHH
Q 015673          190 LLNEMENKGVEVTTVTYTTVLN-CLYKQGNAEEAERLWSEMEKKGVD--LDVAAYNVRITNT-YGGDPERLKELIDEMRD  265 (403)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~  265 (403)
                      .+.........+ ......... ++...|+++.+...+.+.......  .....+......+ ..++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            777666543222 122222222 567777777777777777442110  1112222222223 56788888888888776


Q ss_pred             CCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          266 AGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       266 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      .. .. ....+..+...+...++++.|...+......  .|+ ...+..+...+...+..+++...+.+.....
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            52 22 3556777777788888888888888888765  333 3444444455556677888888888877654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.97  E-value=2  Score=32.35  Aligned_cols=51  Identities=25%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHH-HHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYN-FLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      ..++.+.+..++..+.-.  +|...... .-...+...|++.+|..+|+++.+.
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            556666666666666554  44332222 1223345667777777777776654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.78  E-value=0.28  Score=25.61  Aligned_cols=30  Identities=10%  Similarity=-0.071  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      ..+..+..++...|++++|++.+++..+..
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            345566667777777777777777766533

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.63  E-value=0.21  Score=26.74  Aligned_cols=26  Identities=8%  Similarity=-0.073  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          344 TVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46678888888888888888888854

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.44  E-value=0.24  Score=26.55  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          205 TYTTVLNCLYKQGNAEEAERLWSEME  230 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~a~~~~~~~~  230 (403)
                      +|..|..+|.+.|++++|+.++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35677778888888888888887744

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.43  E-value=2.7  Score=32.05  Aligned_cols=18  Identities=22%  Similarity=0.161  Sum_probs=7.3

Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 015673          351 GLVKKKKIKEAKGVIRTI  368 (403)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~  368 (403)
                      +-.+.|++..|.+.|..+
T Consensus       176 Aa~kagd~a~A~~~F~qi  193 (221)
T COG4649         176 AAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHhccchHHHHHHHHHH
Confidence            333444444444444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.24  E-value=3.2  Score=32.36  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=82.8

Q ss_pred             HHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--
Q 015673          239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYN-----FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR--  311 (403)
Q Consensus       239 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--  311 (403)
                      ..|..++.....+.. +.....+.+....   ...+|.     .+...+...|++++|..-++.....  +.| ..+.  
T Consensus        55 ~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk~l  127 (207)
T COG2976          55 AQYQNAIKAVQAKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKD-ENLKAL  127 (207)
T ss_pred             HHHHHHHHHHhcCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chh-HHHHHH
Confidence            344444444533444 4445555555432   123332     3455678899999999999987753  222 2333  


Q ss_pred             ---HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          312 ---TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       312 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                         .+.+.....|.+|+|+..++.....++.  ......-.+++...|+-++|+.-|++..+..+.+
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence               3456778899999999999876654422  2234445788999999999999999998865433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.17  E-value=3  Score=32.53  Aligned_cols=90  Identities=16%  Similarity=0.049  Sum_probs=48.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHH-----HHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNA-----LLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      +...+...+++++|...++.....   |....+..     |.......|.+++|+..++..... +  -.......-...
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~--w~~~~~elrGDi  168 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-S--WAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-c--HHHHHHHHhhhH
Confidence            455566666666666666655542   22233322     233455566666666666665432 1  122233444556


Q ss_pred             HHhcCChHHHHHHHHHHHhCC
Q 015673          178 HCDSGSSDKALELLNEMENKG  198 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~  198 (403)
                      +...|+-++|..-|++..+.+
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHcc
Confidence            666666666666666666553

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.04  E-value=6.8  Score=35.55  Aligned_cols=95  Identities=11%  Similarity=0.076  Sum_probs=43.1

Q ss_pred             cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHH
Q 015673          131 SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVL  210 (403)
Q Consensus       131 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  210 (403)
                      |.....+++..+..+..+.-+..+-.+|..-   ..+...|..++++|... ..+.-..+|+++.+..+. |...-..|.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa  139 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA  139 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence            4444555555555555555555555555432   12444455555555554 344445555555544331 222222232


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 015673          211 NCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      .-| ..++...+...|.++..
T Consensus       140 ~~y-Ekik~sk~a~~f~Ka~y  159 (711)
T COG1747         140 DKY-EKIKKSKAAEFFGKALY  159 (711)
T ss_pred             HHH-HHhchhhHHHHHHHHHH
Confidence            222 22455555555555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.93  E-value=6.5  Score=35.07  Aligned_cols=140  Identities=10%  Similarity=0.071  Sum_probs=70.7

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhH------HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQ------DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      .-.+.+++++.+|.++|.++.+..-   .+...+      +.++++|.. ++++.....+....+...  .. .|..+..
T Consensus        13 gf~Lqkq~~~~esEkifskI~~e~~---~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s-~~l~LF~   85 (549)
T PF07079_consen   13 GFILQKQKKFQESEKIFSKIYDEKE---SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KS-AYLPLFK   85 (549)
T ss_pred             hHHHHHHhhhhHHHHHHHHHHHHhh---cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--Cc-hHHHHHH
Confidence            3355667788888888887765441   111111      344555543 334444444444432211  11 1222222


Q ss_pred             --HHhccCCHHHHHHHHHHHHhC--CCCC------------cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC----
Q 015673          106 --SYGQAGMFDHAMRTFDQMDEL--GTPR------------SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS----  165 (403)
Q Consensus       106 --~~~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----  165 (403)
                        .+.+.+++.+|++.+....+.  +..+            |...-+..+.++...|++.++..+++++..+ -++    
T Consensus        86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~  164 (549)
T PF07079_consen   86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER-LLKRECE  164 (549)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-Hhhhhhc
Confidence              234667777777777766554  2211            1112244455566677777777777666553 222    


Q ss_pred             CchHHHHHHHHHHH
Q 015673          166 PDKISYGLLLKSHC  179 (403)
Q Consensus       166 ~~~~~~~~l~~~~~  179 (403)
                      -+..+|+.++-.+.
T Consensus       165 w~~d~yd~~vlmls  178 (549)
T PF07079_consen  165 WNSDMYDRAVLMLS  178 (549)
T ss_pred             ccHHHHHHHHHHHh
Confidence            45566665444443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.84  E-value=12  Score=37.80  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChh--cHHHHHHHHH
Q 015673          207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTI--SYNFLMTCYC  283 (403)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~  283 (403)
                      .+....+...+.+++|.-.|+..-+.         .-.+.++ ..|++.+|..+..++...   -+..  +-..|+.-+.
T Consensus       943 ~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen  943 EAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred             HHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence            33344444556666666665554321         1233444 667777777777666432   1211  2245666667


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 015673          284 KNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES  333 (403)
Q Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  333 (403)
                      ..++.-+|-++..+....   |     ...+..+++...+++|.++....
T Consensus      1011 e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            777777777777665542   1     12234466666777777766543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.74  E-value=0.53  Score=24.58  Aligned_cols=27  Identities=11%  Similarity=-0.037  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          344 TVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +|..+..+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455556666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11619 lytic murein transglycosylase; Provisional

Probab=92.68  E-value=9.9  Score=36.55  Aligned_cols=315  Identities=12%  Similarity=0.073  Sum_probs=164.9

Q ss_pred             HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH-HHHHHHHHhc
Q 015673           31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY-LCNLIRSYGQ  109 (403)
Q Consensus        31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~  109 (403)
                      -.....+.|++..+..+...+...   |...-..|..+... .....+++....+++.   +..|-... -......+.+
T Consensus        39 ~A~~a~~~g~~~~~~~~~~~l~d~---pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~  111 (644)
T PRK11619         39 QIKQAWDNRQMDVVEQLMPTLKDY---PLYPYLEYRQLTQD-LMNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELAR  111 (644)
T ss_pred             HHHHHHHCCCHHHHHHHHHhccCC---CcHhHHHHHHHHhc-cccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHH
Confidence            345556778899988887766422   22122222222211 1122455555554443   33343333 3445666677


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH-
Q 015673          110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL-  188 (403)
Q Consensus       110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-  188 (403)
                      .+++...++.+..     .+.+...-.....+....|+.++|......+-.. | ......++.++..+.+.|...... 
T Consensus       112 ~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-g-~~~p~~cd~l~~~~~~~g~lt~~d~  184 (644)
T PRK11619        112 REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-G-KSLPNACDKLFSVWQQSGKQDPLAY  184 (644)
T ss_pred             ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-CCCChHHHHHHHHHHHcCCCCHHHH
Confidence            8888877763322     2345555566777788888877776666666443 2 234556778888877666554432 


Q ss_pred             -HHHHHHHhCCCCCchhhHHHHHHHH-----------H-hcCCHHHHHHHHHHHHHcCCCCchHHHH---HHHhhhcCCC
Q 015673          189 -ELLNEMENKGVEVTTVTYTTVLNCL-----------Y-KQGNAEEAERLWSEMEKKGVDLDVAAYN---VRITNTYGGD  252 (403)
Q Consensus       189 -~~~~~~~~~~~~~~~~~~~~ll~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~  252 (403)
                       +=++.+...|.   ...-..+...+           . -..+...+...+..     +.++...-.   ..+.-+...+
T Consensus       185 w~R~~~al~~~~---~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d  256 (644)
T PRK11619        185 LERIRLAMKAGN---TGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQD  256 (644)
T ss_pred             HHHHHHHHHCCC---HHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhC
Confidence             22222222221   11111111111           0 00111111111111     112322222   2222225567


Q ss_pred             hHHHHHHHHHHHHCC-CCCC--hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015673          253 PERLKELIDEMRDAG-LKPD--TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKV  329 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (403)
                      .+.|..++..+.... ..+.  ......+.......+...+|...+.......  .+......-+......++++.+...
T Consensus       257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~  334 (644)
T PRK11619        257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW  334 (644)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence            788999988875442 2211  1233444444444433566777776654332  2444455555566688899888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +..|.... .-...-..-+.+++...|+.++|...|+++.+
T Consensus       335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88875533 33445555677887788999999999998854

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=92.61  E-value=4.2  Score=33.67  Aligned_cols=130  Identities=13%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccC------CCCcch-h---h-HHHHHHHHHhcCCcchHHHHHHHhhcCCCC
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYA------SPVSSR-Y---A-QDLTVRRLAKSKRFSDIETLIESHKNDPKI   94 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~------~p~~~~-~---~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   94 (403)
                      ..+......+.-..+|..|++..++..+.=.      .+.... .   . -..-|++++..+++.++....-+.-.....
T Consensus        36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk  115 (309)
T PF07163_consen   36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK  115 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence            3455556666667889999888887754320      011000 0   0 123378888888888887766555444444


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-----cCCcCcHHHHH
Q 015673           95 TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR-----SRLYDKVPILF  155 (403)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~  155 (403)
                      .+..+...=|-.|.+.+++..+.++-.......-..+...|..++..|..     .|.+++|+++.
T Consensus       116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            45555665666788888888888887777654333344556666665544     57777877766

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.42  E-value=6.3  Score=33.63  Aligned_cols=130  Identities=12%  Similarity=0.166  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHhhhcC-------CChHHHHHHHHHHHHCCC---CCChhcHHHHHHHHHhcCC-
Q 015673          219 AEEAERLWSEMEKKGVDLDVAAYNVRITNTYG-------GDPERLKELIDEMRDAGL---KPDTISYNFLMTCYCKNEM-  287 (403)
Q Consensus       219 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-  287 (403)
                      +++...+++.+.+.|..-+..+|-+.......       ....++..+++.|++...   .++...+..|+..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566788889999888887766654444422       345688999999998743   2234455555443  3333 


Q ss_pred             ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673          288 ---MDEAKKVYEGLEENGCSPNAT--TFRTWIYHLCGSGN--FDKAYKVFKESVMVHKIPDFNTVKLLVE  350 (403)
Q Consensus       288 ---~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (403)
                         .+.+..+|+.+.+.|+..+..  ....++..+.....  ..++.++++.+.+.++++....|..+.-
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence               356778888888877665443  33333332222222  4578889999999998887777765543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.30  E-value=1.1  Score=37.60  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKI---TQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALL  139 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll  139 (403)
                      .+....+..-....+++.++..+-++......   ++.. -...++.+. .-++++++.++..=+..|+-||-.+++.+|
T Consensus        65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~  142 (418)
T KOG4570|consen   65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM  142 (418)
T ss_pred             eehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence            33344555555567788888877777532211   1111 123444443 346778888888888888888999999999


Q ss_pred             HHHHhcCCcCcHHHHHHHchhh
Q 015673          140 FACTRSRLYDKVPILFDEIPKK  161 (403)
Q Consensus       140 ~~~~~~~~~~~a~~~~~~~~~~  161 (403)
                      +.+.+.+++.+|.++...|+.+
T Consensus       143 D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  143 DSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHhcccHHHHHHHHHHHHHH
Confidence            9999999888888887777654

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.14  E-value=11  Score=36.01  Aligned_cols=89  Identities=13%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCC-----------hHHHHHHHHHHHhCC-----C-CC
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY-HLCGSGN-----------FDKAYKVFKESVMVH-----K-IP  340 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-----------~~~a~~~~~~~~~~~-----~-~~  340 (403)
                      ..-+...|++++|..+|.-..+.+  .-....+.++. +......           ...|..+.+.....+     + ..
T Consensus       421 A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~  498 (613)
T PF04097_consen  421 AREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK  498 (613)
T ss_dssp             HHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence            334556778888887777654321  11122333332 2222222           233444444433221     1 12


Q ss_pred             CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHH
Q 015673          341 DFNTVKLLVE-----GLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       341 ~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~  369 (403)
                      ...|+..|++     -+...|++++|.+.++++.
T Consensus       499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~  532 (613)
T PF04097_consen  499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD  532 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence            2344544443     3567899999998888874

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.14  E-value=4.8  Score=31.60  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=52.8

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCC-----hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673          249 YGGDPERLKELIDEMRDAGLKPD-----TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF  323 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  323 (403)
                      ..|++++|..-|...++.- ++.     ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|-+...+
T Consensus       107 ~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  107 KNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence            6677777777777777652 221     1234444456667777777777777777654 22222333334566677777


Q ss_pred             HHHHHHHHHHHhCC
Q 015673          324 DKAYKVFKESVMVH  337 (403)
Q Consensus       324 ~~a~~~~~~~~~~~  337 (403)
                      ++|+.=|+++.+..
T Consensus       185 eealeDyKki~E~d  198 (271)
T KOG4234|consen  185 EEALEDYKKILESD  198 (271)
T ss_pred             HHHHHHHHHHHHhC
Confidence            77777777777654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.13  E-value=21  Score=39.07  Aligned_cols=153  Identities=10%  Similarity=-0.014  Sum_probs=100.4

Q ss_pred             HHHhhhhccCChHHHHHHHHHhhhccCCCCc-chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 015673           30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVS-SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG  108 (403)
Q Consensus        30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (403)
                      .+..+-.+.+.+.+|+-.++.-..... +.. ....+..+...|...++++...-+.....     .+.. +..-|....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~s-l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPS-LYQQILEHE 1460 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCcc-HHHHHHHHH
Confidence            455667788999999999998421111 111 22333444459999999999887766422     1112 334555566


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH-HHHHHhcCChHHH
Q 015673          109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL-LKSHCDSGSSDKA  187 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a  187 (403)
                      ..|++..|...|+.+.+.+.. ...+++.++......|.++..+-..+-...  ...+....++.+ +.+--+.++++..
T Consensus      1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred             hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhh
Confidence            789999999999999987642 477788888877778888887776666643  333344444433 3444677788877


Q ss_pred             HHHHH
Q 015673          188 LELLN  192 (403)
Q Consensus       188 ~~~~~  192 (403)
                      ...+.
T Consensus      1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred             hhhhh
Confidence            77665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.12  E-value=11  Score=35.88  Aligned_cols=292  Identities=15%  Similarity=0.123  Sum_probs=162.7

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673           66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGM--FDHAMRTFDQMDELGTPRSVISFNALLFACT  143 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  143 (403)
                      ..++..+...+.+..|+++-+.+..... ....+|.....-+.+..+  -+++++.++.=.+... .....|..+..-..
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay  518 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY  518 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence            3457777888889999988877653222 224566667776666532  2223333322222212 24456777777777


Q ss_pred             hcCCcCcHHHHHHHchhhCCC---CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----------CCCchhhHHHH
Q 015673          144 RSRLYDKVPILFDEIPKKYNL---SPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-----------VEVTTVTYTTV  209 (403)
Q Consensus       144 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l  209 (403)
                      ..|+.+.|..+++.=.....-   -.+..-+...+.-+.+.|+.+....++-.+...-           .+.....|.-+
T Consensus       519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~  598 (829)
T KOG2280|consen  519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF  598 (829)
T ss_pred             hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence            788888888777654322100   0122334555666777888888777776665431           11111122211


Q ss_pred             HH--------HHHhcCCHHHHHHHHH--HHH----HcCCCCchHHHHHHHhhhcC--------CChHHHHHHHHHHHH-C
Q 015673          210 LN--------CLYKQGNAEEAERLWS--EME----KKGVDLDVAAYNVRITNTYG--------GDPERLKELIDEMRD-A  266 (403)
Q Consensus       210 l~--------~~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~ll~~~~~--------~~~~~a~~~~~~~~~-~  266 (403)
                      ++        .+...++-.++...|.  ...    ..+..|+..+.......-+.        ++..+-..+.+.+.. .
T Consensus       599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~  678 (829)
T KOG2280|consen  599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF  678 (829)
T ss_pred             HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            11        0011111112211111  100    01112222211111110011        112222233333322 2


Q ss_pred             CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673          267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK  346 (403)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (403)
                      |.....-+.+--+.-+...|+..+|.++-.++.    -||-..|..-+.+++..+++++-.++-+...      .+.-|.
T Consensus       679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~  748 (829)
T KOG2280|consen  679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL  748 (829)
T ss_pred             ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence            333344556667777888899999999888777    6888999999999999999998888776543      245677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 015673          347 LLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      -.+.+|.+.|+.++|.+++.+..
T Consensus       749 PFVe~c~~~~n~~EA~KYiprv~  771 (829)
T KOG2280|consen  749 PFVEACLKQGNKDEAKKYIPRVG  771 (829)
T ss_pred             hHHHHHHhcccHHHHhhhhhccC
Confidence            78999999999999999988775

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=91.91  E-value=6.7  Score=32.83  Aligned_cols=97  Identities=9%  Similarity=0.077  Sum_probs=52.8

Q ss_pred             cHHHHHHHHHHHHh-cC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCchhhHH
Q 015673          131 SVISFNALLFACTR-SR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYT  207 (403)
Q Consensus       131 ~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~  207 (403)
                      |......+++.... .+ ....-.++.+-+...++..++..+...+++.+++.+++.+-.++++..... +...|...|.
T Consensus       163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~  242 (292)
T PF13929_consen  163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA  242 (292)
T ss_pred             ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence            45555555555444 11 122223334444444445556666666666666666666666666665444 3444666666


Q ss_pred             HHHHHHHhcCCHHHHHHHHH
Q 015673          208 TVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       208 ~ll~~~~~~~~~~~a~~~~~  227 (403)
                      .+|......|+..-..++.+
T Consensus       243 ~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  243 EFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             HHHHHHHHcCCHHHHHHHhh
Confidence            66666666666655544443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.77  E-value=4.5  Score=30.54  Aligned_cols=18  Identities=22%  Similarity=0.355  Sum_probs=9.2

Q ss_pred             cCCChHHHHHHHHHHHHC
Q 015673          249 YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~  266 (403)
                      ..|++.+|..+|+++.+.
T Consensus        56 ~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   56 VRGDWDDALRLLRELEER   73 (160)
T ss_pred             HhCCHHHHHHHHHHHhcc
Confidence            445555555555555443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.59  E-value=3.9  Score=34.50  Aligned_cols=49  Identities=22%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      -++++++.++..=...|+-||..+++.+++.+.+.+++..|.++...|.
T Consensus       114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            3444455444444455555555555555555555555555555544444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.56  E-value=13  Score=35.26  Aligned_cols=179  Identities=16%  Similarity=0.075  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHH-----HHhcCCcCcHHHHHHHchhh------CCCCCchHHHHHHHHHHHhc
Q 015673          113 FDHAMRTFDQMDELGTPRSVISFNALLFA-----CTRSRLYDKVPILFDEIPKK------YNLSPDKISYGLLLKSHCDS  181 (403)
Q Consensus       113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~  181 (403)
                      ...|.+.++...+.|.   ...-..+..+     +....+.+.|+.+|+...+.      .+   +....+-+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            4567788887777653   2332222222     33456778888888887551      13   333455666677664


Q ss_pred             C-----ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh----cCC
Q 015673          182 G-----SSDKALELLNEMENKGVEVTTVTYTTVLNCLYK-QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT----YGG  251 (403)
Q Consensus       182 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~  251 (403)
                      .     +.+.|+.++....+.|.+ +....-..+..... ..+...|.++|...-+.|..+.  .+...+...    ...
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A--~~~la~~y~~G~gv~r  378 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA--IYRLALCYELGLGVER  378 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhCCCcCC
Confidence            3     567788888888887653 43333222222222 2456788888888888764322  222222111    446


Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      +...|..++++..+.| .|...--...+..+.. ++++.+...+..+.+.|
T Consensus       379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            7888888888888876 3222211222233333 66677666666666554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.55  E-value=13  Score=35.25  Aligned_cols=178  Identities=15%  Similarity=0.125  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHhhhccCCCCcchhhHHHHHHHH-----HhcCCcchHHHHHHHhhc-------CCCCCCHHHHHHHHHHHh
Q 015673           41 PDKALDIYSSVSKHYASPVSSRYAQDLTVRRL-----AKSKRFSDIETLIESHKN-------DPKITQEPYLCNLIRSYG  108 (403)
Q Consensus        41 ~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~  108 (403)
                      ...|.+.++...+.+     +......+..++     ....+.+.|..+|+....       .+   .......+..+|.
T Consensus       228 ~~~a~~~~~~~a~~g-----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~  299 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG-----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL  299 (552)
T ss_pred             hhHHHHHHHHHHhhc-----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence            467888888888877     223323333332     244678888888888754       23   2223455677776


Q ss_pred             ccC-----CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH---
Q 015673          109 QAG-----MFDHAMRTFDQMDELGTPRSVISFNALLFACTR-SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC---  179 (403)
Q Consensus       109 ~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---  179 (403)
                      +..     +.+.|+.+|...-+.|.+ +.......+..... ..+...|.++|....+. |.   ...+..+..+|.   
T Consensus       300 ~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~---~~A~~~la~~y~~G~  374 (552)
T KOG1550|consen  300 QGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GH---ILAIYRLALCYELGL  374 (552)
T ss_pred             cCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CC---hHHHHHHHHHHHhCC
Confidence            643     567788888888777653 44433333322222 23456788888887654 42   222222222222   


Q ss_pred             -hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          180 -DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       180 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                       ...+...|..++.+..+.|. |...--...+..+.. ++++.+.-.+..+...+
T Consensus       375 gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  375 GVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence             23466778888888877763 332222233334444 66666666666665554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.36  E-value=3  Score=32.76  Aligned_cols=79  Identities=14%  Similarity=0.044  Sum_probs=48.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 015673          282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV---HKIPDFNTVKLLVEGLVKKKKI  358 (403)
Q Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~  358 (403)
                      +.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.++++.++.+..+.   +-.+|+..+..|+..+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            344454 456666766666654445555544444444 55677777777766654   2246677777777777777777


Q ss_pred             HHHH
Q 015673          359 KEAK  362 (403)
Q Consensus       359 ~~a~  362 (403)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            7663

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.29  E-value=0.3  Score=25.79  Aligned_cols=24  Identities=17%  Similarity=0.361  Sum_probs=12.8

Q ss_pred             CCCHHHHHHHHHHHHccCChHHHH
Q 015673          304 SPNATTFRTWIYHLCGSGNFDKAY  327 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~  327 (403)
                      +-|...|..+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            334455555555555555555553

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.24  E-value=18  Score=36.57  Aligned_cols=54  Identities=17%  Similarity=0.137  Sum_probs=35.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHH
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNAT--TFRTWIYHLCGSGNFDKAYKVFKESV  334 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (403)
                      .+.+|..+|+|.+|+.+...+...   .+..  +-..|+.-+...++.-+|-++..+..
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            456666777777777766655421   2222  22567778888888888888877765

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.07  E-value=0.39  Score=25.01  Aligned_cols=29  Identities=3%  Similarity=-0.083  Sum_probs=20.6

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhcc
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHY   55 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~   55 (403)
                      .+..+...+...|++++|++.|+++.+..
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            45566777777788888888887777766

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.87  E-value=2.7  Score=28.39  Aligned_cols=48  Identities=13%  Similarity=0.166  Sum_probs=26.9

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      |.-++.+-++.+...++.|++....+.+++|.+.+|+..|.++++.+.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334444555555555555565556666666666666666666665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.75  E-value=3.4  Score=38.11  Aligned_cols=72  Identities=21%  Similarity=0.103  Sum_probs=33.7

Q ss_pred             hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 015673          144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE  223 (403)
Q Consensus       144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  223 (403)
                      +.|+++.|.++..+..       +..-|..|..+....+++..|.+.|.+...         |..|+-.+...|+-+...
T Consensus       649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~  712 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA  712 (794)
T ss_pred             hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence            3455555555444431       334455555555555555555555544322         233444444455544443


Q ss_pred             HHHHHHHH
Q 015673          224 RLWSEMEK  231 (403)
Q Consensus       224 ~~~~~~~~  231 (403)
                      .+-....+
T Consensus       713 ~la~~~~~  720 (794)
T KOG0276|consen  713 VLASLAKK  720 (794)
T ss_pred             HHHHHHHh
Confidence            33333333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.66  E-value=0.76  Score=23.96  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDEL  126 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~  126 (403)
                      .|..+..++...|++++|+..|++..+.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4566777777777777777777777663

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.61  E-value=7.1  Score=36.15  Aligned_cols=151  Identities=15%  Similarity=0.066  Sum_probs=97.7

Q ss_pred             hccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHH
Q 015673           36 RSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDH  115 (403)
Q Consensus        36 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (403)
                      .-.|+++.|..++..+.+         .....++..+.++|-.++|+++-       ..++.     -.....+.|+.+.
T Consensus       597 vmrrd~~~a~~vLp~I~k---------~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~i  655 (794)
T KOG0276|consen  597 VLRRDLEVADGVLPTIPK---------EIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDI  655 (794)
T ss_pred             hhhccccccccccccCch---------hhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHH
Confidence            344566666554444431         12245666677777766665541       11211     1233456788888


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEME  195 (403)
Q Consensus       116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (403)
                      |.++..+.      -+..-|..|..+....+++..|.+.|.....          |..|+-.+...|+-+....+-....
T Consensus       656 A~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~  719 (794)
T KOG0276|consen  656 AFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAK  719 (794)
T ss_pred             HHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence            87776554      3667789999999999999999998887743          5667777777788776666666666


Q ss_pred             hCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          196 NKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       196 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                      +.|.      .|....+|...|+++++.+++.+-
T Consensus       720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  720 KQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             hhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            6654      233445677889999988887653

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.60  E-value=11  Score=34.01  Aligned_cols=119  Identities=11%  Similarity=-0.027  Sum_probs=69.4

Q ss_pred             cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 015673          145 SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAER  224 (403)
Q Consensus       145 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  224 (403)
                      .|++-.|-+-+....+++.-.|+.....+  ..+...|+++.+.+.+...... +.....+...+++...+.|+++.|..
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence            34444443333333333233344443333  3345668888888877766554 33455677788888888888888888


Q ss_pred             HHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCC
Q 015673          225 LWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAG  267 (403)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~  267 (403)
                      .-.-|....+... .......... ..|-++++...++++...+
T Consensus       379 ~a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        379 TAEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHhccccCCh-hheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            8887777655432 2222222222 5677778887777776553

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.32  E-value=9.8  Score=31.87  Aligned_cols=61  Identities=10%  Similarity=0.000  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +++.....|..+|.+.+|..+.++.+..+ +.+...+-.++..+...|+--.+.+-++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            34444567777888888888887777665 56666777777888888887777766666644

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.25  E-value=14  Score=33.64  Aligned_cols=182  Identities=10%  Similarity=0.087  Sum_probs=121.9

Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHH
Q 015673           91 DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS  170 (403)
Q Consensus        91 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  170 (403)
                      ...+.+...+.+++..+....+++-...+..+|...|  .+-..+..++.+|..+ .-+.-..+|+++.+- . -.|...
T Consensus        60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-d-fnDvv~  134 (711)
T COG1747          60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-D-FNDVVI  134 (711)
T ss_pred             hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-c-chhHHH
Confidence            3455666677889999999999999999999999866  6888999999999998 557788899988763 2 224444


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCchHHHHH
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVT------TVTYTTVLNCLYKQGNAEEAERLWSEMEKK-GVDLDVAAYNV  243 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~  243 (403)
                      -..|...|-+ ++.+.+..+|.++... +-|.      ...|.-+...  -..+.+..+.+..++... |...-.+.+.-
T Consensus       135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd  210 (711)
T COG1747         135 GRELADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQD  210 (711)
T ss_pred             HHHHHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            4455555554 8888999999888765 2221      1234333321  144667777776666543 33334445555


Q ss_pred             HHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673          244 RITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY  282 (403)
Q Consensus       244 ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  282 (403)
                      +...| ...++.+|++++..+.+.+ ..|...-..++..+
T Consensus       211 v~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         211 VYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             HHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            55566 6778888888888877765 33555555555543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.03  E-value=1.5  Score=24.79  Aligned_cols=24  Identities=8%  Similarity=0.322  Sum_probs=14.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          348 LVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       348 l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      +..+|...|+.+.|.++++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            455566666666666666665543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.93  E-value=1.1  Score=24.64  Aligned_cols=29  Identities=10%  Similarity=0.138  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          342 FNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ..+++.+...|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35677888888889999999988888764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.71  E-value=3.8  Score=32.22  Aligned_cols=80  Identities=16%  Similarity=0.017  Sum_probs=57.4

Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC--CCCCchHHHHHHHHHHHhcCCh
Q 015673          107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY--NLSPDKISYGLLLKSHCDSGSS  184 (403)
Q Consensus       107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~  184 (403)
                      ..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+-.  +-.+|+..+..|++.+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            455555 678888888877665545555556555555 667888888888776543  2357788899999999999998


Q ss_pred             HHHH
Q 015673          185 DKAL  188 (403)
Q Consensus       185 ~~a~  188 (403)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.71  E-value=3.7  Score=32.19  Aligned_cols=88  Identities=11%  Similarity=0.091  Sum_probs=59.4

Q ss_pred             HHhcCCcchHHHHHHHhhcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673           72 LAKSKRFSDIETLIESHKNDPKITQEP----YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL  147 (403)
Q Consensus        72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  147 (403)
                      +...|++++|..-|........+....    .|..-.-++.+.+.++.|+.-....++.++. ...+...-..+|.+...
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence            456788888888887776433222222    3445566777888888888888888775532 33444444567888888


Q ss_pred             cCcHHHHHHHchh
Q 015673          148 YDKVPILFDEIPK  160 (403)
Q Consensus       148 ~~~a~~~~~~~~~  160 (403)
                      +++|+.-|+++.+
T Consensus       184 ~eealeDyKki~E  196 (271)
T KOG4234|consen  184 YEEALEDYKKILE  196 (271)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888875

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.65  E-value=7.7  Score=29.69  Aligned_cols=24  Identities=21%  Similarity=0.097  Sum_probs=11.8

Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHH
Q 015673           91 DPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        91 ~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      .+.+++...+..+++.+.+.|++.
T Consensus        23 ~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   23 HNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHH
Confidence            344444445555555555555444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.60  E-value=2.2  Score=36.32  Aligned_cols=84  Identities=13%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             cCCChHHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY  327 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (403)
                      ++|.+++|++.|......  .| |.+++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|...+|.
T Consensus       109 KQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK  185 (536)
T KOG4648|consen  109 KQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK  185 (536)
T ss_pred             hccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence            677777777777766554  34 67777777777777777777766666655432 112233444444444455555665


Q ss_pred             HHHHHHHh
Q 015673          328 KVFKESVM  335 (403)
Q Consensus       328 ~~~~~~~~  335 (403)
                      +-++..+.
T Consensus       186 kD~E~vL~  193 (536)
T KOG4648|consen  186 KDCETVLA  193 (536)
T ss_pred             HhHHHHHh
Confidence            55555553

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=89.54  E-value=3.9  Score=32.34  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHH
Q 015673          338 KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWK  381 (403)
Q Consensus       338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  381 (403)
                      ..|++.+|..++.++...|+.++|.+..+++..-+|.+....|.
T Consensus       140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~  183 (193)
T PF11846_consen  140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ  183 (193)
T ss_pred             hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            46899999999999999999999999999999877766555654

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.28  E-value=16  Score=32.94  Aligned_cols=124  Identities=10%  Similarity=0.042  Sum_probs=80.3

Q ss_pred             HHHHHhcCChHHHHHH-HHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCC
Q 015673          175 LKSHCDSGSSDKALEL-LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGD  252 (403)
Q Consensus       175 ~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~  252 (403)
                      |.-....|++-.|-+- +..+....-.|+..  ..........|+++.+.+.+...... +.....+...++... ..|+
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence            3334456776666544 44444433334433  33344466789999999888776553 345566777777777 8899


Q ss_pred             hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      ++.|..+-..|....++ +...........-..|-++++...|+.+...+
T Consensus       373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            99999999888876554 34433333444456788899999998877553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.18  E-value=22  Score=34.26  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHh-CCchhHHHHHHHHHHhCCC
Q 015673          339 IPDFNTVKLLVEGLVKKKKI----------KEAKGVIRTIKKK-FPPNVLRAWKKVEEELGLV  390 (403)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~  390 (403)
                      ..|.+.|..||.-....-.+          .....+++++... ..|+.......++..|...
T Consensus       687 q~D~eLWe~LI~~~ldkPe~~~~ll~i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~dy~~q  749 (846)
T KOG2066|consen  687 QDDSELWEDLINYSLDKPEFIKALLNIGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQDYNLQ  749 (846)
T ss_pred             cCCHHHHHHHHHHhhcCcHHHHHHHHhhhcccHHHHHhcCCCCCCCccHHHHHHHHHHhhhhh
Confidence            34666666666554443332          2333444444432 3455555666666655543

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.10  E-value=25  Score=34.87  Aligned_cols=167  Identities=11%  Similarity=0.008  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCchHHHHHHHhhh-cCCCh--HHHHHHHHHHHHCCCCCChhcHH-
Q 015673          204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGV---DLDVAAYNVRITNT-YGGDP--ERLKELIDEMRDAGLKPDTISYN-  276 (403)
Q Consensus       204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~-~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-  276 (403)
                      .-|..|+..|...|+.++|+++|.+..+..-   ..-...+..++..+ ..+..  +...++-.-............+. 
T Consensus       505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~  584 (877)
T KOG2063|consen  505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS  584 (877)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence            3477788888888888888888888766320   00111122233333 22222  33333333332221110011111 


Q ss_pred             -----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CChHHHHHH-----HHH
Q 015673          277 -----------FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS--------GNFDKAYKV-----FKE  332 (403)
Q Consensus       277 -----------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~-----~~~  332 (403)
                                 .-+-.|......+-+..+++.+....-.++....+.++..|+..        ++.+++.+.     +..
T Consensus       585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~  664 (877)
T KOG2063|consen  585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD  664 (877)
T ss_pred             cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence                       12234556667778888888888655466777777777766542        122233333     222


Q ss_pred             HHhC--CCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          333 SVMV--HKI--------PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       333 ~~~~--~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +.+.  ...        +....|....-.+.+.|+.++|..++-....
T Consensus       665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            2211  111        2234454445556688999999888766553

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.53  E-value=17  Score=32.10  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGT--PRSVISFNALLFACTRSRLYDKVPILFDEI  158 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  158 (403)
                      +..+...|..+|+++.|++.|.+...--.  +-.+..|-.+|..-...|+|.....+..+.
T Consensus       153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A  213 (466)
T KOG0686|consen  153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA  213 (466)
T ss_pred             HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence            45566666666777777766666443210  112334444555555556665555555544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.42  E-value=1.4  Score=24.14  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      +++.+...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            3444444444444444444444443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.23  E-value=13  Score=30.67  Aligned_cols=187  Identities=10%  Similarity=0.103  Sum_probs=107.2

Q ss_pred             ccCChHHHHHHHHHhhhccCCCCcchhh---HHHHHHHHHhcCCcchHHHHHHHhhcC-----CCCCCHHHHHHHHHHHh
Q 015673           37 SEFDPDKALDIYSSVSKHYASPVSSRYA---QDLTVRRLAKSKRFSDIETLIESHKND-----PKITQEPYLCNLIRSYG  108 (403)
Q Consensus        37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~  108 (403)
                      +...+++|+.-|++..+..  +....+-   ...++....+.+++++..+.+.++..-     ...-+....++++...+
T Consensus        39 ~e~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS  116 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS  116 (440)
T ss_pred             cccCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence            4568999999999998877  4433333   355678888889999888888776521     11122334566666655


Q ss_pred             ccCCHHHHHHHHHHHHhC-CCCCcHH----HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC---c-------hHHHHH
Q 015673          109 QAGMFDHAMRTFDQMDEL-GTPRSVI----SFNALLFACTRSRLYDKVPILFDEIPKKYNLSP---D-------KISYGL  173 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~-------~~~~~~  173 (403)
                      ...+.+--...|+.-.+. .-.-+..    |-..|...|...|++.+..++++++...+....   |       ...|..
T Consensus       117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl  196 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL  196 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence            555555555555443221 0001222    224566667777777777777777765432211   1       234666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHH-----HhcCCHHHHHHHH
Q 015673          174 LLKSHCDSGSSDKALELLNEMENK-GVEVTTVTYTTVLNCL-----YKQGNAEEAERLW  226 (403)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~  226 (403)
                      -|+.|....+-..-..+++..... ..-|.+.... .|+-|     .+.|++++|-.=|
T Consensus       197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF  254 (440)
T KOG1464|consen  197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF  254 (440)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence            677777777767777777765432 1223333332 33333     3556777665433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.73  E-value=3.3  Score=38.02  Aligned_cols=86  Identities=15%  Similarity=0.033  Sum_probs=43.0

Q ss_pred             hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHH
Q 015673           74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPI  153 (403)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  153 (403)
                      ..|+...|...+.................|.....+.|....|-.++.+...... ..+-++..+.+++....+++.|++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHH
Confidence            3455555555555544222111122233455555555555566665555544331 234455555556666666666666


Q ss_pred             HHHHchh
Q 015673          154 LFDEIPK  160 (403)
Q Consensus       154 ~~~~~~~  160 (403)
                      .|++..+
T Consensus       698 ~~~~a~~  704 (886)
T KOG4507|consen  698 AFRQALK  704 (886)
T ss_pred             HHHHHHh
Confidence            6666554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.41  E-value=6.1  Score=31.50  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=49.1

Q ss_pred             HHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 015673          242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG--CSPNATTFRTWIYH  316 (403)
Q Consensus       242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~  316 (403)
                      +..+..+ +.+...+++...+.-++.+ +-|..+-..+++.++-.|++++|..-++..-+..  ..+-..+|..+|.+
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3444555 7788888888888776663 3355556677888888899999887777655431  23445567666654

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.26  E-value=0.19  Score=37.55  Aligned_cols=84  Identities=11%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL  147 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  147 (403)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++..       +......++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45555666666666666666665444455666666777777766656666555511       11222344555555555


Q ss_pred             cCcHHHHHHHc
Q 015673          148 YDKVPILFDEI  158 (403)
Q Consensus       148 ~~~a~~~~~~~  158 (403)
                      ++++..++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            55555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.23  E-value=2.3  Score=22.00  Aligned_cols=28  Identities=11%  Similarity=-0.094  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          343 NTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+|..+...|...|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3566777788888888888888888765

...

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=87.16  E-value=8.1  Score=27.70  Aligned_cols=51  Identities=12%  Similarity=0.156  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          325 KAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      +..+-++.+...++.|++.....-++++.+.+++..|.++|+-++.+..+.
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~  117 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ  117 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH
Confidence            344455555566667777777777777777777777777777776554433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.11  E-value=1  Score=21.91  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=12.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHH
Q 015673          346 KLLVEGLVKKKKIKEAKGVIR  366 (403)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~  366 (403)
                      ..+...+...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            345566666666666666654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.25  E-value=1.9  Score=24.34  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=15.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      |..+|...|+.+.|..+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            556666666666666666666644

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=85.61  E-value=5.9  Score=30.55  Aligned_cols=108  Identities=18%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHhhhccCCCCcc--hhhHHHHHHHHHhcCCcchHHHHHH-------HhhcCCCCCCHHHHHHHHHHHhccC
Q 015673           41 PDKALDIYSSVSKHYASPVSS--RYAQDLTVRRLAKSKRFSDIETLIE-------SHKNDPKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        41 ~~~A~~~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~  111 (403)
                      ++.|.+.++.....+  |...  ..-|...+.-+++..+..++..+++       +... -.|.....+..+..+|...+
T Consensus         7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH
Confidence            566777777777777  4422  2233344444444444344444444       3332 23333344444555554332


Q ss_pred             ----C-------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673          112 ----M-------FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus       112 ----~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                          +       +++|...|++...  ..|+...|+.-+....      +|-++..++.
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~  134 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIH  134 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHH
Confidence                2       4455555555554  3377777777666653      2444554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=85.60  E-value=2.8  Score=21.66  Aligned_cols=26  Identities=27%  Similarity=0.207  Sum_probs=13.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      |..+...|...|++++|.+.|++..+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444555555555555555554443

...

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.26  E-value=9.9  Score=26.14  Aligned_cols=47  Identities=13%  Similarity=0.072  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      +..+-++.+....+.|++....+.+++|.+.+++..|.++|+-+...
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44555556666666677777777777777777777777777666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.94  E-value=42  Score=33.07  Aligned_cols=221  Identities=15%  Similarity=0.121  Sum_probs=120.5

Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCch-------HHHHHHH-HHHHhcCChHHHHHHHHHHHhC----CCCCchhhHHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDK-------ISYGLLL-KSHCDSGSSDKALELLNEMENK----GVEVTTVTYTTVL  210 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll  210 (403)
                      ....++.+|..+..++....+ .|+.       ..++.+- ......|+++.|.++.+.....    -..+....+..+.
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            456889999999988865422 2221       1233332 2334578899999988877654    2233456667778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH---hh--h-cCCChHH--HHHHHHHHHHCCC--CC----ChhcHH
Q 015673          211 NCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI---TN--T-YGGDPER--LKELIDEMRDAGL--KP----DTISYN  276 (403)
Q Consensus       211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~--~-~~~~~~~--a~~~~~~~~~~~~--~~----~~~~~~  276 (403)
                      .+..-.|++++|..+.....+..-.-+...+....   .+  + .+|+...  .+..+........  +|    -..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            88888999999999887776653333433333222   22  2 5563332  2333333322210  11    123344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHccCChHHHHHHHHHHHhCCCCC----CHHHHH
Q 015673          277 FLMTCYCKNEMMDEAKKVYEGLEENG--CSPNAT--TF--RTWIYHLCGSGNFDKAYKVFKESVMVHKIP----DFNTVK  346 (403)
Q Consensus       277 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~  346 (403)
                      .++.++.+   .+.+..-...-.+.|  ..|...  .+  ..|+......|+.++|...+.++......+    +..+-.
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            45555554   333332222222111  122222  22  356778888999999999988877653222    222222


Q ss_pred             HHHH--HHHhcCCHHHHHHHHHH
Q 015673          347 LLVE--GLVKKKKIKEAKGVIRT  367 (403)
Q Consensus       347 ~l~~--~~~~~g~~~~a~~~~~~  367 (403)
                      ..+.  .....|+...+.....+
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHh
Confidence            2332  33457888877777665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.89  E-value=1.1  Score=22.95  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=17.6

Q ss_pred             HHHHhhhhccCChHHHHHHHHHhhhcc
Q 015673           29 SKAKSKLRSEFDPDKALDIYSSVSKHY   55 (403)
Q Consensus        29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~   55 (403)
                      ..+...+.+.|++++|++.|+.+++..
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            345555666677777777777776665

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=84.17  E-value=26  Score=30.01  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCchHHHHHHHhhh--cCCChHHHHHHHHHHHHCCCCCCh----h
Q 015673          204 VTYTTVLNCLYKQGNAEEAERLWSEMEK----KGVDLDVAAYNVRITNT--YGGDPERLKELIDEMRDAGLKPDT----I  273 (403)
Q Consensus       204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~----~  273 (403)
                      ..+.....-||+.||.+.|++.+.+..+    .|.+.|+..+.+-+..+  ...-+.+.++..+.+.+.|..-+.    .
T Consensus       105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK  184 (393)
T KOG0687|consen  105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK  184 (393)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence            4455666778888888888877765433    45566666665555444  333344555555555555543322    2


Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      +|..+  .|....++.+|-.+|-+..
T Consensus       185 vY~Gl--y~msvR~Fk~Aa~Lfld~v  208 (393)
T KOG0687|consen  185 VYQGL--YCMSVRNFKEAADLFLDSV  208 (393)
T ss_pred             HHHHH--HHHHHHhHHHHHHHHHHHc
Confidence            34332  2345567888888777655

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.14  E-value=24  Score=29.69  Aligned_cols=65  Identities=9%  Similarity=0.087  Sum_probs=43.4

Q ss_pred             CCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673          268 LKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN-GCSPNATTFRTWIYHLCGSGNFDKAYKVFKE  332 (403)
Q Consensus       268 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  332 (403)
                      -.++..+...++..+++.+++.+-.+++...... +...|...|..+|......|+..-..++.++
T Consensus       198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            3556666667777777777777777777765543 4455666777777777777776665555543

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=83.55  E-value=19  Score=27.96  Aligned_cols=67  Identities=21%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHCCCCCC--HHHHH-----HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673          288 MDEAKKVYEGLEENGCSPN--ATTFR-----TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK  357 (403)
Q Consensus       288 ~~~A~~~~~~~~~~~~~~~--~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  357 (403)
                      ++.|+.+|+.+.+..-.|.  .....     ..+..|.+.|.+++|.+++++..+   .|+......-+....+.++
T Consensus        85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd  158 (200)
T cd00280          85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD  158 (200)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence            4678888877775432221  11122     234578889999999999988876   3444444555555555554

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=82.97  E-value=31  Score=30.00  Aligned_cols=140  Identities=12%  Similarity=0.052  Sum_probs=62.8

Q ss_pred             HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHHH
Q 015673          257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG---SGNFDKAYKVFKES  333 (403)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~  333 (403)
                      +.++++..+.+ +.+......++..+.+..+.++..+-|+++.... +-+...|...+.....   .-.++....+|.+.
T Consensus        51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~  128 (321)
T PF08424_consen   51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC  128 (321)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            34445444442 2234444445555555555555555566555542 2244455555443332   22344444444333


Q ss_pred             HhC------CC----CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCchhHH-----HHHHHHHHhCC
Q 015673          334 VMV------HK----IPD-------FNTVKLLVEGLVKKKKIKEAKGVIRTIKKK--FPPNVLR-----AWKKVEEELGL  389 (403)
Q Consensus       334 ~~~------~~----~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-----~~~~l~~~~~~  389 (403)
                      +..      +.    .+.       ..++..+...+..+|-.+.|..+++.+.+-  +.|....     .....++.++-
T Consensus       129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWe  208 (321)
T PF08424_consen  129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWE  208 (321)
T ss_pred             HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhC
Confidence            221      10    000       112222333344567777777777766652  2333221     22334445555


Q ss_pred             CCCCCCCCC
Q 015673          390 VPAPAVGDG  398 (403)
Q Consensus       390 ~~~~~~~~~  398 (403)
                      .+.+++|+.
T Consensus       209 S~vpRiGE~  217 (321)
T PF08424_consen  209 SEVPRIGEP  217 (321)
T ss_pred             cCCCCCCCC
Confidence            555666554

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=82.95  E-value=49  Score=32.32  Aligned_cols=195  Identities=14%  Similarity=0.120  Sum_probs=98.0

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHH---HHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVR---RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...++..+.+.|++++....-..|.+.-  |. ....|..-+.   .....+...++..+|++....-.  ....|...+
T Consensus       116 ~v~Li~llrk~~dl~kl~~ar~~~~~~~--pl-~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e~~  190 (881)
T KOG0128|consen  116 MVQLIGLLRKLGDLEKLRQARLEMSEIA--PL-PPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEEVV  190 (881)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhc--CC-ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHHHH
Confidence            4457888888888887777666666655  33 2333332222   23344777888888888774333  333333333


Q ss_pred             HHH-------hccCCHHHHHHHHHHHHhC-CCCCc--HHHHHHHHH---HHHhcCCcCcHHHHHHHchhhCCCCCchHHH
Q 015673          105 RSY-------GQAGMFDHAMRTFDQMDEL-GTPRS--VISFNALLF---ACTRSRLYDKVPILFDEIPKKYNLSPDKISY  171 (403)
Q Consensus       105 ~~~-------~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  171 (403)
                      ..+       ...++++....+|.+.+.. |...+  ...|..++.   .|..+-..+....+|..-...   +.|..+-
T Consensus       191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~---~~D~~~~  267 (881)
T KOG0128|consen  191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ---PLDEDTR  267 (881)
T ss_pred             HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---cchhhhh
Confidence            222       3346677788888877542 22221  222332222   233333334455555444322   2232221


Q ss_pred             HHHHHHHH-------hcCChHHHHHH-------HHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          172 GLLLKSHC-------DSGSSDKALEL-------LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       172 ~~l~~~~~-------~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      +.=..--.       ...+++.|.+-       |++..+. .++-...|-.++..+.+.|+.-....+++++..
T Consensus       268 ~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~  340 (881)
T KOG0128|consen  268 GWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA  340 (881)
T ss_pred             HHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            11111101       11233333332       2333332 233445677788888888887776666666543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.61  E-value=6  Score=25.66  Aligned_cols=46  Identities=11%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             ccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 015673          319 GSGNFDKAYKVFKESVMVHKIPD--FNTVKLLVEGLVKKKKIKEAKGV  364 (403)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~  364 (403)
                      ...+.++|+..|+..++.-..+.  ..++..++.+|+..|++++++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677788888887776532221  24566677888888888777665

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=82.60  E-value=32  Score=29.91  Aligned_cols=62  Identities=8%  Similarity=-0.017  Sum_probs=35.6

Q ss_pred             hHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015673           80 DIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACT  143 (403)
Q Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  143 (403)
                      .-+.+++++.+. .+.+...+..++..+.+..+.++..+-++.+...... +...|...+....
T Consensus        49 ~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q  110 (321)
T PF08424_consen   49 RKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQ  110 (321)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHH
Confidence            344566665543 4455555566666666666666666666666664432 4555655555443

>PRK09687 putative lyase; Provisional

Probab=82.46  E-value=29  Score=29.41  Aligned_cols=59  Identities=14%  Similarity=0.040  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +|..+-...+.++.+.|+ ..|+..+-+..+.+   +  .....+.++...|.. +|...+.++.+
T Consensus       204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence            344444455555555554 33444443433322   1  122345555555553 45555555554

>smart00028 TPR Tetratricopeptide repeats

Probab=82.02  E-value=2.9  Score=20.53  Aligned_cols=26  Identities=15%  Similarity=0.015  Sum_probs=13.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          345 VKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +..+...+...|++++|...+++..+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34444555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.95  E-value=2.4  Score=27.46  Aligned_cols=45  Identities=9%  Similarity=0.031  Sum_probs=19.5

Q ss_pred             hcCCcchHHHHHHHhhcCCCCCCHH--HHHHHHHHHhccCCHHHHHH
Q 015673           74 KSKRFSDIETLIESHKNDPKITQEP--YLCNLIRSYGQAGMFDHAMR  118 (403)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~  118 (403)
                      ..++.++|+..|+........+...  ++..++.+|+..|++.++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555544322222111  22335555555555555544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.27  E-value=17  Score=29.18  Aligned_cols=78  Identities=10%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH--KIPDFNTVKLLVEG  351 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~  351 (403)
                      |.+..++.+.+.+.+.+|+...+.-.+.. +.|..+-..+++.+|-.|++++|..-++-.-...  ..+-..+|..++.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            45566778888999999999998877664 5566678888999999999999998777665432  23445667776655


Q ss_pred             H
Q 015673          352 L  352 (403)
Q Consensus       352 ~  352 (403)
                      -
T Consensus        82 e   82 (273)
T COG4455          82 E   82 (273)
T ss_pred             H
Confidence            3

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=81.22  E-value=21  Score=27.66  Aligned_cols=108  Identities=17%  Similarity=0.117  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHCCCCCChhcHHH---HHHHHHhcCChHHHHHHHHH-------HHHCCCCCCH-HHHHHHHHHHHccC
Q 015673          253 PERLKELIDEMRDAGLKPDTISYNF---LMTCYCKNEMMDEAKKVYEG-------LEENGCSPNA-TTFRTWIYHLCGSG  321 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~-------~~~~~~~~~~-~~~~~l~~~~~~~~  321 (403)
                      ++.|.+..+.-...+ +.|...++.   .+.-+++.....++..++++       .+..  .|+. .++..+..++...+
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence            455555555544442 334443332   33333344443444444443       3333  4543 46666666665543


Q ss_pred             ----C-------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          322 ----N-------FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       322 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                          +       +++|.+.|++..+.  .|+..+|+.-+...      ++|-++..++.+.
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~  136 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ  136 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence                2       44455555555533  47777776555443      5666776666553

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10941 hypothetical protein; Provisional

Probab=81.06  E-value=25  Score=29.50  Aligned_cols=56  Identities=9%  Similarity=-0.140  Sum_probs=25.6

Q ss_pred             HHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673          139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      -.+|.+.++++.|+.+.+.+..  -.|.+..-+.--.-.|.+.|.+..|..=++...+
T Consensus       188 K~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        188 KAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3445555555555555555542  1122223333344445555555555555544443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.95  E-value=21  Score=26.68  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcH-HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISY-NFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      ..++.+++..++..|.-.  .|+..-. ..-...+...|++++|.++|+++.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            567777777777777654  4433221 112334557788888888888877653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.69  E-value=39  Score=29.62  Aligned_cols=191  Identities=12%  Similarity=0.057  Sum_probs=88.9

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CcHHHHHHHHHHHH
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP----RSVISFNALLFACT  143 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~  143 (403)
                      .+.+.-+.|+++...+.......  ..++..++..+...  +.++++++...++.+...-..    .....|........
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~--~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~   79 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNE--DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV   79 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccC--CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            45677788999986666555542  22334444444332  788999988888877542100    11222333333333


Q ss_pred             hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh-----cCChHHHHHHH---HHHHh--CCCCCchhhHHHHHHHH
Q 015673          144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD-----SGSSDKALELL---NEMEN--KGVEVTTVTYTTVLNCL  213 (403)
Q Consensus       144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~~~~--~~~~~~~~~~~~ll~~~  213 (403)
                      +...+.+..++.+-...   ...+......++.....     ..+++.-..++   ..+..  ........+|..++..+
T Consensus        80 ~lq~L~Elee~~~~~~~---~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a  156 (352)
T PF02259_consen   80 KLQQLVELEEIIELKSN---LSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA  156 (352)
T ss_pred             HHhHHHHHHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            33333333333332211   10112222333322211     12222222211   11111  01222345566667777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCC---chHHHHHHHhhh-cCCChHHHHHHHHHHHH
Q 015673          214 YKQGNAEEAERLWSEMEKKGVDL---DVAAYNVRITNT-YGGDPERLKELIDEMRD  265 (403)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~  265 (403)
                      .+.|.++.|...+..+...+...   ++...-.-...+ ..|+..+|...++....
T Consensus       157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777766543211   112222222233 56777777777766665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.59  E-value=33  Score=28.75  Aligned_cols=87  Identities=7%  Similarity=-0.061  Sum_probs=46.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHH
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV-----EGLV  353 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~  353 (403)
                      |++++..+++.+++...-.--+.--+..+.+...-|-.|.+.+.+..+.++-.......-.-+...|..++     +.+.
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            56677777777766554433321112223334444445777777777777766665431111122244333     3344


Q ss_pred             hcCCHHHHHHHH
Q 015673          354 KKKKIKEAKGVI  365 (403)
Q Consensus       354 ~~g~~~~a~~~~  365 (403)
                      =.|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence            467777777766

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=80.40  E-value=11  Score=32.43  Aligned_cols=53  Identities=9%  Similarity=-0.055  Sum_probs=34.0

Q ss_pred             HHHhcCCcCcHHHHHHHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673          141 ACTRSRLYDKVPILFDEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       141 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      -|.+.|.+++|+.+|...+.   +.| |.+++..-..+|.+...+..|..-......
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia  159 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA  159 (536)
T ss_pred             hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            46677777777777776653   334 666777777777777776666555544443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=80.36  E-value=4.9  Score=20.22  Aligned_cols=29  Identities=28%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          356 KKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       356 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      |+.+.+..+|+++.+..+ .....|...++
T Consensus         1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFP-KSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence            567788888888887554 55667876654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.09  E-value=43  Score=29.75  Aligned_cols=95  Identities=12%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             hhhHHHHHHHHHhcCCcchHHHHHHHhhcCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCC
Q 015673           62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDP--KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL---------GTPR  130 (403)
Q Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~  130 (403)
                      ...+.-+...|...|+++.|.+.|.+...--  .......+..+|..-.-.|+|........+....         .+++
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4455666777777777777777777744211  1122234555666666677776666665555443         2344


Q ss_pred             cHHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673          131 SVISFNALLFACTRSRLYDKVPILFDEI  158 (403)
Q Consensus       131 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~  158 (403)
                      ...++..+...+.+  .+..|.+.|-..
T Consensus       230 kl~C~agLa~L~lk--kyk~aa~~fL~~  255 (466)
T KOG0686|consen  230 KLKCAAGLANLLLK--KYKSAAKYFLLA  255 (466)
T ss_pred             chHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence            56666666665554  555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 84.9 bits (208), Expect = 9e-18
 Identities = 30/262 (11%), Positives = 74/262 (28%), Gaps = 4/262 (1%)

Query: 49  SSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYG 108
                          A    ++   +         L +  +  P+   E  L  L++   
Sbjct: 44  LKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAP 103

Query: 109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEI--PKKYNLSP 166
                D       Q  +           A    C  +        L       ++     
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA-ERL 225
               Y  ++      G+  + + +L  +++ G+    ++Y   L C+ +Q       ER 
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK 284
             +M ++G+ L      V ++        + + ++          P  ++ + L+     
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

Query: 285 NEMMDEAKKVYEGLEENGCSPN 306
            +      K++  L+   C   
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.8 bits (130), Expect = 3e-08
 Identities = 10/104 (9%), Positives = 26/104 (25%), Gaps = 7/104 (6%)

Query: 263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKV---YEGLEENGCSPNATTFRTWIYHLCG 319
              A L            C    + +  A  +   + G  +         +   +     
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 320 SGNFDKAYKVFKESVMVHK--IPDFNTVKLLVEGLVKKKKIKEA 361
            G F +   V     +      PD  +    ++ + ++ +    
Sbjct: 178 QGAFKELVYVLFM--VKDAGLTPDLLSYAAALQCMGRQDQDAGT 219

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 17/171 (9%), Positives = 37/171 (21%), Gaps = 31/171 (18%)

Query: 156 DEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK 215
           ++  ++   SP +     LL+      S D       +     +            C   
Sbjct: 80  EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139

Query: 216 QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISY 275
                 A  L                                      R          Y
Sbjct: 140 TDQLPLAHHLLVVHH-------------------------------GQRQKRKLLTLDMY 168

Query: 276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA 326
           N +M  + +     E   V   +++ G +P+  ++   +  +         
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 6e-08
 Identities = 56/418 (13%), Positives = 116/418 (27%), Gaps = 121/418 (28%)

Query: 46  DIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR 105
           DI S     +      +  QD+  + +   +    I  ++        ++    L   + 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHI--IMSKDA----VSGTLRLFWTLL 72

Query: 106 SYGQAGMFDHAMRTFDQ------MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP 159
           S  Q  M    +    +      M  + T +   S    ++   R RLY+   +      
Sbjct: 73  SK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----- 126

Query: 160 KKYNLS-PD---KISYGLL-LKSHCD--------SGSSDKALELLNEMENKGVEVTTVTY 206
            KYN+S      K+   LL L+   +        SG +  AL++    + +      + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELI------ 260
             + NC   +   E  ++L  +++         + N+++          L+ L+      
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYE 244

Query: 261 ------DEMRDAG-LKP------------DTISYNFLMTCYCKNEMMDEAKKVY---EGL 298
                   +++A                      +FL      +  +D         E  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 299 ----------------EENGCSP------------NATTFRTWIYHLC------------ 318
                           E    +P               T+  W +  C            
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 319 --GSGNFDKAYK---VFKESVMVHKIP-----------DFNTVKLLVEGLVKKKKIKE 360
                 + K +    VF  S     IP             + V ++V  L K   +++
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 50/396 (12%), Positives = 121/396 (30%), Gaps = 136/396 (34%)

Query: 26  ISVSKAKS---------KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK 76
           +++    S         KL  + DP+     ++S S H ++     ++    +RRL KSK
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 77  RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT---------FDQMDELG 127
            + +   L+  +  + K                   F+ + +           D +    
Sbjct: 242 PYEN-CLLVLLNVQNAKAWN---------------AFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 128 TPRSVISFNALLFACTRSR--LYDKVPILFDEIPKK-YNLSPDKIS-YGLLLKSH----- 178
           T    +  +++       +  L   +     ++P++    +P ++S     ++       
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 179 ------CDSGSS--DKALELLNEME-----------NKGVEVTTVTYTTVLNCLYKQGNA 219
                 CD  ++  + +L +L   E                + T     +L         
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT----ILL--------- 392

Query: 220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGL-----KPDTIS 274
                +W ++ K                    D      +++++    L     K  TIS
Sbjct: 393 ---SLIWFDVIKS-------------------DVM---VVVNKLHKYSLVEKQPKESTIS 427

Query: 275 YN---FLMTCYCKNE-----MMDEAKKVYEGLEENGCSPNATT--FRTWI-YHLCGSGNF 323
                  +    +NE      + +   + +  + +   P      F + I +HL    + 
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIK 359
           ++   +F+   +     DF  +         ++KI+
Sbjct: 488 ER-MTLFRMVFL-----DFRFL---------EQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 52/358 (14%), Positives = 100/358 (27%), Gaps = 114/358 (31%)

Query: 11  CT--ATTAAGSSTTASSISVSKAKS--KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQD 66
           C    TT     T   S + +   S         PD+   +           +  R  QD
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-------LDCR-PQD 317

Query: 67  LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL 126
           L   R                          P   ++I     A      + T+D    +
Sbjct: 318 L--PREVL------------------TTN--PRRLSII-----AESIRDGLATWDNWKHV 350

Query: 127 GTPR--SVI--SFNALLFACTRSRLYDKVPILFDE---IPKK------YNLSPDKI---- 169
              +  ++I  S N L  A  R +++D++ + F     IP        +++    +    
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYR-KMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 170 ----SYGLLLKSHCDSGSS--DKALELLNEMENKG-VEVTTVTYTTVLNCL--------- 213
                Y L+ K   +S  S     LEL  ++EN+  +  + V +  +             
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 214 ----------YKQGNAEEAERLWSEMEKKGVDL-------------------------DV 238
                     +   N E  ER  +      +D                           +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 239 AAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYE 296
             Y   I +        +  ++D +       + I   +  T   +  +M E + ++E
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKY--TDLLRIALMAEDEAIFE 581

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 43/228 (18%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 72  LAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS 131
            + S+R + +  L         +T   +L      Y      D A+RT  Q D L     
Sbjct: 76  ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAM 135

Query: 132 VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL---KSHCDSGSSDKAL 188
            +    +L    R  L  K      E+ K  +   D     L                A 
Sbjct: 136 TVQ---ILLKLDRLDLARK------ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186

Query: 189 ELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT 248
            +  EM +K    T +       C   QG  E AE +  E   K         N+ + + 
Sbjct: 187 YIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245

Query: 249 Y-GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVY 295
           + G  PE     + +++D         + F+     K    D     Y
Sbjct: 246 HLGKPPEVTNRYLSQLKD--AHRS---HPFIKEYRAKENDFDRLVLQY 288

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 15/232 (6%)

Query: 148 YDKVPILFDEIPKKYNLSPDKISY--GLLLKSHCDSGSSDKALELLNEMENKGVEVTTVT 205
           Y +     +E  +    SP++       L +++         L+ +       ++     
Sbjct: 15  YQQC---INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQ----A 67

Query: 206 YTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRD 265
                  L      +           + VD+    + +   + Y       +     +R 
Sbjct: 68  VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY----FYDQNPDAALRT 123

Query: 266 AGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG-LEENGCSPNATTFRTWIYHLCGSGNFD 324
                        +    K + +D A+K  +   +++  +        W+    G     
Sbjct: 124 LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183

Query: 325 KAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV 376
            AY +F+E       P    +       + + + + A+GV++    K   + 
Sbjct: 184 DAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.73
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.73
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.71
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.7
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.7
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.7
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.7
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.69
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.68
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.68
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.67
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.61
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.59
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.56
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.56
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.54
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.5
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.47
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.4
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.37
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.37
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.26
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.24
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.22
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.21
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.2
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.14
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.1
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.09
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.09
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.03
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.97
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.97
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.92
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.9
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.88
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.88
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.81
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.79
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.79
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.74
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.73
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.7
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.69
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.66
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.64
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.63
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.62
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.61
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.59
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.56
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.56
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.52
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.28
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.24
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.2
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.15
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.12
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.1
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.96
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.93
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.85
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.84
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.74
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.71
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.44
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.33
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.31
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.3
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.3
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.22
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.11
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.02
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.97
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.78
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.78
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.63
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.47
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.14
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.12
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.09
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.0
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.57
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.36
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.85
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.51
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.47
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.41
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.26
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.84
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.8
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.79
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.65
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.6
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.64
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.45
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.36
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.94
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.2
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.59
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.39
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.32
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.72
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	88.61
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.34
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.29
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.19
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.46
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.38
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.25
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.4

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-33  Score=262.35  Aligned_cols=355  Identities=10%  Similarity=0.003  Sum_probs=309.6

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHH--------------------------------
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLT--------------------------------   68 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l--------------------------------   68 (403)
                      .+.+...+..++..+.+.|++++|+++|+++.+.+  |.. ...+..+                                
T Consensus       196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  272 (597)
T 2xpi_A          196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC-YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR  272 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred             cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh-hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence            35567889999999999999999999999999987  532 2222222                                


Q ss_pred             ------HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           69 ------VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        69 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                            +..|.+.|++++|.++|+++...  +++..++..++..|.+.|++++|+++|+++.+.++. +..++..++.++
T Consensus       273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  349 (597)
T 2xpi_A          273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL  349 (597)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence                  44556789999999999999754  577888999999999999999999999999987654 788999999999


Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      .+.|++++|..+++++.+  ..+.+..+++.++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|
T Consensus       350 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A  426 (597)
T 2xpi_A          350 HESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQA  426 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999986  44567889999999999999999999999999886 334688999999999999999999


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      +++|+++.+.+ +.+..++..+...+ ..|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.
T Consensus       427 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          427 ISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999874 34677888888888 9999999999999998874 447889999999999999999999999999875


Q ss_pred             ----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          302 ----GCSPN--ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       302 ----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                          +..|+  ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.. |+
T Consensus       505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~  582 (597)
T 2xpi_A          505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PN  582 (597)
T ss_dssp             HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC
Confidence                66777  7899999999999999999999999999876 6689999999999999999999999999999854 55


Q ss_pred             hHHHHHHHHHHhC
Q 015673          376 VLRAWKKVEEELG  388 (403)
Q Consensus       376 ~~~~~~~l~~~~~  388 (403)
                      ....|..+...|.
T Consensus       583 ~~~~~~~l~~~~~  595 (597)
T 2xpi_A          583 EIMASDLLKRALE  595 (597)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHh
Confidence            5668887776653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.9e-32  Score=253.09  Aligned_cols=359  Identities=9%  Similarity=-0.079  Sum_probs=223.4

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      ++...|..++..+.+.|++++|+.+|+++....  |  +..++..++.+|.+.|++++|..+|+.+..  .+++..+++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~  155 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--G--NPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYL  155 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--C--CchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHH
Confidence            566778889999999999999999999998766  5  345667788888888888888888888753  2456667777


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHh-C--------------CCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC----
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDE-L--------------GTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN----  163 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----  163 (403)
                      ++.+|.+.|++++|+++|+++.. .              +.+++..+|+.++.+|.+.|++++|..+|+++.+...    
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  235 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE  235 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence            77777777888888777774322 1              2234577777777777777777777777776643310    


Q ss_pred             -----------------------------------------------------------------CCCchHHHHHHHHHH
Q 015673          164 -----------------------------------------------------------------LSPDKISYGLLLKSH  178 (403)
Q Consensus       164 -----------------------------------------------------------------~~~~~~~~~~l~~~~  178 (403)
                                                                                       .+++..+++.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence                                                                             136778888888888


Q ss_pred             HhcCChHHHHHHHHHHHhCCC---------------------------------CCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673          179 CDSGSSDKALELLNEMENKGV---------------------------------EVTTVTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                      .+.|++++|.++|+++.+.+.                                 +.+..++..++.+|.+.|++++|.++
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  395 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY  395 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence            888999888888888876532                                 12334444455555555555555555


Q ss_pred             HHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673          226 WSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS  304 (403)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  304 (403)
                      |+++.+.. +.+..+++.+...+ ..|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +
T Consensus       396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~  472 (597)
T 2xpi_A          396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q  472 (597)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            55554432 12334444444444 5555555555555555442 2244555555555555555555555555555443 3


Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHH
Q 015673          305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKIPD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLR  378 (403)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  378 (403)
                      .+..+|..++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+..| +...
T Consensus       473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~  551 (597)
T 2xpi_A          473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDAN  551 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChH
Confidence            34555555555666666666666666555544    33444  45555566666666666666666665555332 2233


Q ss_pred             HHHHHHHHhCCCC
Q 015673          379 AWKKVEEELGLVP  391 (403)
Q Consensus       379 ~~~~l~~~~~~~~  391 (403)
                      .|..+...|...+
T Consensus       552 ~~~~l~~~~~~~g  564 (597)
T 2xpi_A          552 VHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC
Confidence            5555555544443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.2e-32  Score=245.70  Aligned_cols=203  Identities=14%  Similarity=0.163  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC---------hH
Q 015673          116 AMRTFDQMDELGTPRSV-ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS---------SD  185 (403)
Q Consensus       116 A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~  185 (403)
                      +..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+. |+.||..+|+.||.+|++.+.         ++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            34444555555544333 34666667777777777777777777655 677777777777777765543         45


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR  264 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~  264 (403)
                      .|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.++ +.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            666677777666666777777777777777777777777776666666666666666666666 6666666666666666


Q ss_pred             HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673          265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG  319 (403)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (403)
                      +.|+.||..||++|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666666666666666666666666655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=4.4e-32  Score=244.81  Aligned_cols=206  Identities=14%  Similarity=0.245  Sum_probs=180.2

Q ss_pred             chHHHHHHHhhcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---------c
Q 015673           79 SDIETLIESHKNDPKITQE-PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL---------Y  148 (403)
Q Consensus        79 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~  148 (403)
                      ..+..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            3455666667655554443 45788999999999999999999999999999999999999999998776         4


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      ++|.++|++|.+. |+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus        87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            5689999999776 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673          229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN  285 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  285 (403)
                      |.+.|+.||..+|+.++.++ +.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999 9999999999999999999999999999999998764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=7.2e-29  Score=219.99  Aligned_cols=352  Identities=11%  Similarity=-0.009  Sum_probs=285.5

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      +...+..+...+...|++++|...++.+.+..  |. ...+|..++..+.+.|++++|...|+++.. ..|.+...+..+
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l  107 (388)
T 1w3b_A           32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL-LAEAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINL  107 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCcchHHHHHHH
Confidence            34556667777888899999999998888877  43 566778888889999999999999998874 345556678888


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      +.++.+.|++++|++.|+++.+.++. +...+..+...+...|++++|..+|+++.+.  .+.+..+|..+...+...|+
T Consensus       108 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~  184 (388)
T 1w3b_A          108 AAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGE  184 (388)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            88899999999999999988876533 5666777888888889999999999888763  34456788888899999999


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE  262 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~  262 (403)
                      +++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+... .+...+..+...+ ..|++++|...|++
T Consensus       185 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  262 (388)
T 1w3b_A          185 IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999988763 34667888888899999999999999988887642 2355566666666 88999999999999


Q ss_pred             HHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 015673          263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF  342 (403)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (403)
                      +.+.+ +.+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+.
T Consensus       263 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~  339 (388)
T 1w3b_A          263 AIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA  339 (388)
T ss_dssp             HHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH
T ss_pred             HHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH
Confidence            98874 3356788889999999999999999999998774 6678889999999999999999999999998764 5678


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhC
Q 015673          343 NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELG  388 (403)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (403)
                      .++..+..+|.+.|++++|...++++.+ ..|+....|..+...+.
T Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~a~~~lg~~~~  384 (388)
T 1w3b_A          340 AAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHT-TCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHhHHHHHH
Confidence            8899999999999999999999999987 55666778877766553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=6.3e-28  Score=213.93  Aligned_cols=350  Identities=11%  Similarity=-0.006  Sum_probs=298.6

Q ss_pred             HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc
Q 015673           31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA  110 (403)
Q Consensus        31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (403)
                      +...+.+.|++++|++.++.+.+..  |. +...+..+...+...|++++|...++.... ..+.+...|..+...+.+.
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~~p~~~~~~~~lg~~~~~~   80 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE--PD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHC
Confidence            4566778999999999999999988  54 445667888899999999999999999874 4567788899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 015673          111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALEL  190 (403)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  190 (403)
                      |++++|+..|+++.+..+. +..+|..+..++.+.|++++|...|+++.+.  .+.+...+..+...+...|++++|.+.
T Consensus        81 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~  157 (388)
T 1w3b_A           81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC  157 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999999886532 5678999999999999999999999999864  233456778889999999999999999


Q ss_pred             HHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC
Q 015673          191 LNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLK  269 (403)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~  269 (403)
                      |+++.+. .+.+..+|..+..++...|++++|...|+++.+.+. .+...+..+-..+ ..|++++|...+++..+.. +
T Consensus       158 ~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p  234 (388)
T 1w3b_A          158 YLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P  234 (388)
T ss_dssp             HHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence            9999886 344678999999999999999999999999998742 2344555555555 8999999999999998864 3


Q ss_pred             CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673          270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV  349 (403)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (403)
                      .+..++..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..++.+.|++++|...|+++++.. +.+..++..+.
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  312 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA  312 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence            357788999999999999999999999999875 4467889999999999999999999999999876 77889999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCCC
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPAP  393 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  393 (403)
                      ..+.+.|++++|...++++.+. .|+....|..+...+...++.
T Consensus       313 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~  355 (388)
T 1w3b_A          313 NIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999874 455566788887777665543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=9.6e-26  Score=203.90  Aligned_cols=362  Identities=14%  Similarity=0.075  Sum_probs=291.1

Q ss_pred             CCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHH
Q 015673           19 SSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEP   98 (403)
Q Consensus        19 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   98 (403)
                      ...|.+...+..++..+.+.|++++|+.+|+.+.+..  |. +..++..++.++...|++++|...|+++... .+.+..
T Consensus        20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~   95 (450)
T 2y4t_A           20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTA   95 (450)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred             cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCcHH
Confidence            3455566788889999999999999999999999887  44 5677889999999999999999999999853 455677


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH---HHHHHH------------HHHHHhcCCcCcHHHHHHHchhhCC
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV---ISFNAL------------LFACTRSRLYDKVPILFDEIPKKYN  163 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~  163 (403)
                      .+..++.+|.+.|++++|...|+.+.+.++. +.   ..+..+            ...+...|++++|..+|+++.+.  
T Consensus        96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  172 (450)
T 2y4t_A           96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--  172 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            8889999999999999999999999986532 34   555555            34488999999999999999864  


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHH
Q 015673          164 LSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA-AYN  242 (403)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~  242 (403)
                      .+.+...+..++.+|.+.|++++|.++|+++.+. .+.+..++..++.+|...|++++|...|+++.+..  |+.. .+.
T Consensus       173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~  249 (450)
T 2y4t_A          173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA  249 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHH
Confidence            4457788999999999999999999999999876 34578899999999999999999999999998763  4333 333


Q ss_pred             HH------------Hhhh-cCCChHHHHHHHHHHHHCCCCCC-----hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015673          243 VR------------ITNT-YGGDPERLKELIDEMRDAGLKPD-----TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS  304 (403)
Q Consensus       243 ~l------------l~~~-~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  304 (403)
                      .+            ...+ ..|++++|...|+++.+.  .|+     ...+..+..++.+.|++++|...++++.+.. +
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p  326 (450)
T 2y4t_A          250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-P  326 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence            22            3445 889999999999999886  444     3478888999999999999999999998764 5


Q ss_pred             CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH
Q 015673          305 PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG------------LVKKK-----KIKEAKGVIRT  367 (403)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~  367 (403)
                      .+...|..+..+|...|++++|...++++++.. +.+...+..+..+            |...|     +.+++.+.+++
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence            578899999999999999999999999999765 4556777666633            43444     56778888887


Q ss_pred             HHHhCCch----------hHHHHHHHHHHhCCCCCCC
Q 015673          368 IKKKFPPN----------VLRAWKKVEEELGLVPAPA  394 (403)
Q Consensus       368 ~~~~~~~~----------~~~~~~~l~~~~~~~~~~~  394 (403)
                      ......|+          ....+..+.++|..-+|+.
T Consensus       406 ~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~  442 (450)
T 2y4t_A          406 LALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE  442 (450)
T ss_dssp             HHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred             HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence            43333333          2336777888887776653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=8.8e-25  Score=197.60  Aligned_cols=328  Identities=12%  Similarity=0.037  Sum_probs=264.1

Q ss_pred             HHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 015673           43 KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQ  122 (403)
Q Consensus        43 ~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  122 (403)
                      .+...+..+....  | .+...+..++..+.+.|++++|..+|+++.. ..+.+...+..++.++...|++++|+..|++
T Consensus        10 ~~~~~~~~~~~~~--p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A           10 GVDLGTENLYFQS--M-ADVEKHLELGKKLLAAGQLADALSQFHAAVD-GDPDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             ---------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccc--H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3444455555555  3 3667788899999999999999999999985 3556678889999999999999999999999


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch---HHHHHH------------HHHHHhcCChHHH
Q 015673          123 MDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK---ISYGLL------------LKSHCDSGSSDKA  187 (403)
Q Consensus       123 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a  187 (403)
                      +.+.++. +..++..+..+|.+.|++++|...|+++.+.  .+.+.   ..+..+            ...+...|++++|
T Consensus        86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9987653 6889999999999999999999999999753  22333   455555            4458899999999


Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673          188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~  266 (403)
                      ...|+++.+. .+.+...+..++.+|.+.|++++|..+|+++.+.. +.+...+..+...+ ..|++++|...|+++.+.
T Consensus       163 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          163 IAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999886 34578889999999999999999999999998863 34566777777777 999999999999999876


Q ss_pred             CCCCChhcHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHH
Q 015673          267 GLKPDTISYNFL------------MTCYCKNEMMDEAKKVYEGLEENGCSPN-----ATTFRTWIYHLCGSGNFDKAYKV  329 (403)
Q Consensus       267 ~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~  329 (403)
                      . +.+...+..+            ...|.+.|++++|...|+.+.+.  .|+     ...+..+..++.+.|++++|+..
T Consensus       241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  317 (450)
T 2y4t_A          241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV  317 (450)
T ss_dssp             C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3 2234444444            78899999999999999999986  344     44788889999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673          330 FKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVE  384 (403)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  384 (403)
                      ++++++.. +.+..++..+..+|...|++++|...++++.+ ..|+....|..+.
T Consensus       318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~  370 (450)
T 2y4t_A          318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSSCHHHHHHHH
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcchHHHHHHHH
Confidence            99998765 56789999999999999999999999999998 5555566777666

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-23  Score=193.55  Aligned_cols=350  Identities=11%  Similarity=0.002  Sum_probs=278.1

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC-------
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT-------   95 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------   95 (403)
                      |+...+..++..+...|++++|+..|+.+.+.+  |. +..++..++.++...|++++|...|+++.......       
T Consensus        37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  113 (514)
T 2gw1_A           37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM  113 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH
T ss_pred             ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHH
Confidence            356788888999999999999999999999887  44 55677888999999999999999998886443211       


Q ss_pred             -----------------------------------------------------------------------CHHHHHHHH
Q 015673           96 -----------------------------------------------------------------------QEPYLCNLI  104 (403)
Q Consensus        96 -----------------------------------------------------------------------~~~~~~~l~  104 (403)
                                                                                             +...+....
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (514)
T 2gw1_A          114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG  193 (514)
T ss_dssp             HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence                                                                                   122233333


Q ss_pred             HHHhc---cCCHHHHHHHHHHHHh-----C--CC------CCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch
Q 015673          105 RSYGQ---AGMFDHAMRTFDQMDE-----L--GT------PRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK  168 (403)
Q Consensus       105 ~~~~~---~~~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  168 (403)
                      ..+..   .|++++|+..|+++.+     .  ..      +.+..++..+...+...|++++|..+|+++.+. .  |+.
T Consensus       194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~  270 (514)
T 2gw1_A          194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRV  270 (514)
T ss_dssp             HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCH
T ss_pred             HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccH
Confidence            33443   7899999999999877     3  11      123567788888899999999999999999865 2  337


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT  248 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  248 (403)
                      ..+..+..++...|++++|...++++.+. .+.+...+..+..++...|++++|...++++.+.... +...+..+...+
T Consensus       271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  348 (514)
T 2gw1_A          271 NSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLA  348 (514)
T ss_dssp             HHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHH
Confidence            78889999999999999999999999886 3446788899999999999999999999999887433 445555556666


Q ss_pred             -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHc---
Q 015673          249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPN----ATTFRTWIYHLCG---  319 (403)
Q Consensus       249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---  319 (403)
                       ..|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... .++    ...+..+...+..   
T Consensus       349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence             8999999999999998763 33567888899999999999999999999876421 111    3478888999999   


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673          320 SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV  383 (403)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  383 (403)
                      .|++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+..| +....|..+
T Consensus       428 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~  489 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TMEEKLQAI  489 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-ccHHHHHHH
Confidence            999999999999998865 56788899999999999999999999999988544 444455543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.9e-24  Score=195.43  Aligned_cols=356  Identities=11%  Similarity=0.024  Sum_probs=289.0

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+......+.+.|++++|+..|+++.+.+  |  +..++..++.++...|++++|...++++.. ..+.+...+..++.
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--E--DPVFYSNLSACYVSVGDLKKVVEMSTKALE-LKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--c--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-cChHHHHHHHHHHH
Confidence            457778899999999999999999999988  6  567888999999999999999999999985 34566778899999


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCC-------------------------------------------------------
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPR-------------------------------------------------------  130 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------------------------------------  130 (403)
                      ++...|++++|...|+.+.+.+...                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999987765311                                                       


Q ss_pred             -----------------------cHHHHHHHHHHHHh---cCCcCcHHHHHHHchh-----hCCC-------CCchHHHH
Q 015673          131 -----------------------SVISFNALLFACTR---SRLYDKVPILFDEIPK-----KYNL-------SPDKISYG  172 (403)
Q Consensus       131 -----------------------~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~  172 (403)
                                             +...+......+..   .|++++|..+|+++.+     ....       +.+...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                   12333333333443   7999999999999876     2011       23456788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCC
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGG  251 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~  251 (403)
                      .+...+...|++++|...|+++.+...  +...+..+..++...|++++|...++++.+... .+...+..+...+ ..|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence            899999999999999999999988643  388899999999999999999999999988743 3455566666666 999


Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK  331 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (403)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999874 3356788889999999999999999999998764 4467788899999999999999999999


Q ss_pred             HHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673          332 ESVMVHKI-PD----FNTVKLLVEGLVK---KKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       332 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  392 (403)
                      ++.+.... ++    ...+..+..++..   .|++++|...++++.+.. |+....|..+...+...++
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~  464 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED  464 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence            98875311 11    3488889999999   999999999999998854 4445577777776655544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=7.1e-22  Score=172.77  Aligned_cols=330  Identities=12%  Similarity=0.024  Sum_probs=224.8

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      +..+..+...+...|++++|+..|+.+.+..  |. +..++..++..+...|++++|...++++... .+.+...+..+.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~   78 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-KMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcchHHHHHH
Confidence            4566778888888999999999999998877  43 5567778888888999999999999888743 445567788888


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCC--CcHHHHHHH------------HHHHHhcCCcCcHHHHHHHchhhCCCCCchHH
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTP--RSVISFNAL------------LFACTRSRLYDKVPILFDEIPKKYNLSPDKIS  170 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  170 (403)
                      .++...|++++|...|+.+.+..+.  .+...+..+            ...+...|++++|..+++++.+.  .+.+...
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~  156 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL  156 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHH
Confidence            8888999999999999988875430  134444444            35566666777777777666553  2345556


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcC
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYG  250 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  250 (403)
                      +..+...+...|++++|...++++.+. .+.+..++..+..++...|++++|...+++..+..  |+....         
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~---------  224 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRC---------  224 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH---------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHH---------
Confidence            666666666677777777777666665 23455666666666666667776666666666542  221110         


Q ss_pred             CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHH
Q 015673          251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT----TFRTWIYHLCGSGNFDKA  326 (403)
Q Consensus       251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a  326 (403)
                            ...+..+.      .......+...+.+.|++++|...++++.+.. +.+..    .+..+..++...|++++|
T Consensus       225 ------~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          225 ------FAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             ------HHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ------HHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence                  00111110      11122234666778888888888888887753 22332    344566788888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          327 YKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      ...++++.+.. +.+..++..+..++...|++++|.+.++++.+ ..|+....|..+..+.
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-HNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHH
Confidence            88888888764 55778888888888888888888888888887 4455555676666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=8.6e-22  Score=172.26  Aligned_cols=286  Identities=11%  Similarity=0.020  Sum_probs=213.6

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC---CCH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI---TQE   97 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~   97 (403)
                      .|.++..+..+...+...|++++|+..|+.+.+..  |. ....+..+...+...|++++|...++++... .+   .+.
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~  108 (359)
T 3ieg_A           33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-NPSEQEEK  108 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-CCCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCcccChH
Confidence            34556788889999999999999999999999987  54 4577889999999999999999999999843 33   344


Q ss_pred             HHHHHH------------HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC
Q 015673           98 PYLCNL------------IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS  165 (403)
Q Consensus        98 ~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  165 (403)
                      ..+..+            ...+...|++++|+..|+.+.+..+ .+...+..+...+...|++++|...++++.+  ..+
T Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~  185 (359)
T 3ieg_A          109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASK--LKS  185 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence            445444            5888999999999999999988765 3788899999999999999999999999986  345


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTV------------LNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      .+...+..+...+...|++++|...++++.+.. +.+...+..+            ...+.                   
T Consensus       186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~-------------------  245 (359)
T 3ieg_A          186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELI-------------------  245 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            577889999999999999999999999998763 2233333222            22333                   


Q ss_pred             CCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCC-h----hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 015673          234 VDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPD-T----ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNAT  308 (403)
Q Consensus       234 ~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  308 (403)
                                     ..|++++|...++++.+..  |+ .    ..+..+..++...|++++|...++...+.. +.+..
T Consensus       246 ---------------~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  307 (359)
T 3ieg_A          246 ---------------RDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN  307 (359)
T ss_dssp             ---------------HTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             ---------------HcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence                           4455555555555555432  22 1    224446667777788888888887777653 44667


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673          309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL  352 (403)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (403)
                      ++..+...+...|++++|...|+++.+.. +.+...+..+..+.
T Consensus       308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            77777777888888888888888877654 34455555554443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=1.2e-21  Score=181.16  Aligned_cols=338  Identities=12%  Similarity=0.045  Sum_probs=247.9

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...+..+...+.+.|++++|++.|+.+.+.+  |. +..++..++.++...|++++|.+.++++.. ..+.+...+..+.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la  100 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PN-EPVFYSNISACYISTGDLEKVIEFTTKALE-IKPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCchHHHHHHHH
Confidence            3456667777777888888888888887776  43 456667777777888888888888887764 3345566677777


Q ss_pred             HHHhccCCHHHHHHHHHHH-------------------------------------------------------------
Q 015673          105 RSYGQAGMFDHAMRTFDQM-------------------------------------------------------------  123 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~-------------------------------------------------------------  123 (403)
                      .++...|++++|+..|+.+                                                             
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV  180 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence            7777777777777666422                                                             


Q ss_pred             ------------------------------------------------HhCCCCCc-------HHHHHHHHHHHHhcCCc
Q 015673          124 ------------------------------------------------DELGTPRS-------VISFNALLFACTRSRLY  148 (403)
Q Consensus       124 ------------------------------------------------~~~~~~~~-------~~~~~~ll~~~~~~~~~  148 (403)
                                                                      .+..+. +       ..++..+...+...|++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccH
Confidence                                                            221111 1       12355555667778888


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      ++|...++++.+.   .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...+++
T Consensus       260 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          260 LDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            8898888888754   3557778888888889999999999999888763 34677888888999999999999999999


Q ss_pred             HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC-----
Q 015673          229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG-----  302 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----  302 (403)
                      +.+.... +...+..+...+ ..|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+..     
T Consensus       336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            8886432 344555555555 8899999999999988764 3356678888889999999999999999877532     


Q ss_pred             CCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          303 CSPNATTFRTWIYHLCGS----------GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      .......+......+...          |++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|++..+..
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            111122244445667777          99999999999988765 5677889999999999999999999999998754


Q ss_pred             Cc
Q 015673          373 PP  374 (403)
Q Consensus       373 ~~  374 (403)
                      +.
T Consensus       493 ~~  494 (537)
T 3fp2_A          493 RT  494 (537)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.90  E-value=4.4e-21  Score=165.80  Aligned_cols=284  Identities=6%  Similarity=-0.063  Sum_probs=193.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673           96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL  175 (403)
Q Consensus        96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  175 (403)
                      +...+..++..+...|++++|+++|+.+.+..+. +...+..++..+...|++++|..+++++.+.  .+.+...+..+.
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~   97 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVG   97 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence            3344556666666677777777777777665432 4455555666667777777777777777653  233556667777


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCCh
Q 015673          176 KSHCDSG-SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDP  253 (403)
Q Consensus       176 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~  253 (403)
                      ..+...| ++++|.+.|+++.+.. +.+...|..+..++...|++++|...++++.+.... +...+..+...+ ..|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence            7777777 7777777777776652 335566777777777777777777777777765422 223333344444 77777


Q ss_pred             HHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHccCChHH
Q 015673          254 ERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG--------CSPNATTFRTWIYHLCGSGNFDK  325 (403)
Q Consensus       254 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~  325 (403)
                      ++|...++++.+.. +.+...+..+...+...|++++|...++++.+..        .+.+..++..+..++...|++++
T Consensus       176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            77777777777653 3356677777788888888888888888776531        12335677778888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      |...++++.+.. +.+...+..+..++.+.|++++|.+.+++..+ ..|+....|..+..++
T Consensus       255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG-LRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT-TCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc-cCCCchHHHHHHHHHH
Confidence            888888887765 45667777888888888888888888888776 4455556777777766

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=1.6e-20  Score=162.19  Aligned_cols=303  Identities=13%  Similarity=0.032  Sum_probs=201.2

Q ss_pred             CCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673           20 STTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY   99 (403)
Q Consensus        20 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (403)
                      ..+.++..+...+..+...|++++|+++|+.+.+..  |. +...+..++..+...|++++|..+++++.. ..+.+...
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~   92 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PF-HASCLPVHIGTLVELNKANELFYLSHKLVD-LYPSNPVS   92 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTSTHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcCCHHH
Confidence            344455667777777777888888888888887776  43 334455667777778888888888887764 33445566


Q ss_pred             HHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673          100 LCNLIRSYGQAG-MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus       100 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      +..+...+...| ++++|...|+++.+.... +...|..+...+...|++++|...++++.+.  .+.+...+..+...+
T Consensus        93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~  169 (330)
T 3hym_B           93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEY  169 (330)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence            777777777777 788888888887775532 5667777777777778888888777777653  233455566677777


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHH
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKE  258 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~  258 (403)
                      ...|++++|.+.++++.+. .+.+...+..+..++...|++++|...++++.+......              +      
T Consensus       170 ~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------~------  228 (330)
T 3hym_B          170 GLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG--------------N------  228 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS--------------C------
T ss_pred             HHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc--------------c------
Confidence            7777777777777777765 234566677777777777777777777776655310000              0      


Q ss_pred             HHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 015673          259 LIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK  338 (403)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (403)
                            ....+.+..++..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++.+.. 
T Consensus       229 ------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  300 (330)
T 3hym_B          229 ------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-  300 (330)
T ss_dssp             ------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-
T ss_pred             ------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-
Confidence                  00012234566677777777777777777777777653 3455667777777777777777777777776554 


Q ss_pred             CCCHHHHHHHHHHH-HhcCCH
Q 015673          339 IPDFNTVKLLVEGL-VKKKKI  358 (403)
Q Consensus       339 ~~~~~~~~~l~~~~-~~~g~~  358 (403)
                      +.+...+..+..++ ...|+.
T Consensus       301 p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          301 RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             SCCHHHHHHHHHHHHTTTTC-
T ss_pred             CCchHHHHHHHHHHHHHhCch
Confidence            44566666666666 345544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=1.1e-20  Score=165.94  Aligned_cols=312  Identities=12%  Similarity=-0.022  Sum_probs=219.3

Q ss_pred             cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHH-HHHHhhcCCCC-C--CHHHHHHHHHHHhccCCH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIET-LIESHKNDPKI-T--QEPYLCNLIRSYGQAGMF  113 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~  113 (403)
                      .+.++.+...|+.+...+  |.           ++...|++++|.+ .+++....... |  +...+..+...+.+.|++
T Consensus        14 ~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (368)
T 1fch_A           14 VDFWDKLQAELEEMAKRD--AE-----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL   80 (368)
T ss_dssp             ---------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH
T ss_pred             cccHHHHHHHHHHHHcCC--ch-----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH
Confidence            345556666666665554  21           2234477888887 77766532211 1  234566788888899999


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 015673          114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNE  193 (403)
Q Consensus       114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  193 (403)
                      ++|+..|+++.+..+. +..++..+..++...|++++|...|+++.+.  .+.+..++..+..++...|++++|.+.+++
T Consensus        81 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  157 (368)
T 1fch_A           81 PNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRD  157 (368)
T ss_dssp             HHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999998886543 6778888888899999999999999988764  345677888889999999999999999998


Q ss_pred             HHhCCCCCchhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHhhh-cCCChHHH
Q 015673          194 MENKGVEVTTVTYTT---------------VLNCLYKQGNAEEAERLWSEMEKKGVDL-DVAAYNVRITNT-YGGDPERL  256 (403)
Q Consensus       194 ~~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~-~~~~~~~a  256 (403)
                      +.+.... +...+..               .+..+...|++++|...++++.+..... +...+..+...+ ..|++++|
T Consensus       158 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A  236 (368)
T 1fch_A          158 WLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA  236 (368)
T ss_dssp             HHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            8876322 2222221               2333448899999999999998874332 356666666666 89999999


Q ss_pred             HHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673          257 KELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (403)
                      ...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus       237 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          237 VDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999988763 3357789999999999999999999999998764 556788999999999999999999999998875


Q ss_pred             CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          337 HKIPD-----------FNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       337 ~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      . +.+           ..+|..+..+|...|++++|..++++..
T Consensus       315 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          315 Q-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             H-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             C-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            3 222           6889999999999999999999887544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=1.8e-18  Score=159.83  Aligned_cols=306  Identities=13%  Similarity=0.001  Sum_probs=246.2

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC----------
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND----------   91 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------   91 (403)
                      |.++..+..++..+...|++++|++.|+++.+.+  |. +..++..++.++...|++++|...|+.+...          
T Consensus        56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  132 (537)
T 3fp2_A           56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PD-HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP  132 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------C
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHH
Confidence            3456788889999999999999999999999988  54 5667788899999999999888877433111          


Q ss_pred             --------------------------------------------------------------------------------
Q 015673           92 --------------------------------------------------------------------------------   91 (403)
Q Consensus        92 --------------------------------------------------------------------------------   91 (403)
                                                                                                      
T Consensus       133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  212 (537)
T 3fp2_A          133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL  212 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence                                                                                            


Q ss_pred             ------------------CCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673           92 ------------------PKITQE-------PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus        92 ------------------~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                                        ..+.+.       ..+..+...+...|++++|+..|+.+.+..  |+...+..+...+...|
T Consensus       213 ~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~  290 (537)
T 3fp2_A          213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKE  290 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhc
Confidence                              111111       134556677888999999999999999865  55888999999999999


Q ss_pred             CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673          147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      ++++|...++++.+.  .+.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+
T Consensus       291 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~  367 (537)
T 3fp2_A          291 NSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF  367 (537)
T ss_dssp             CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999874  34567889999999999999999999999998863 346788999999999999999999999


Q ss_pred             HHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCC-----ChhcHHHHHHHHHhc----------CChHH
Q 015673          227 SEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKP-----DTISYNFLMTCYCKN----------EMMDE  290 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------~~~~~  290 (403)
                      +++.+.. +.+...+..+...+ ..|++++|...++++.+.....     ....+..+..++...          |++++
T Consensus       368 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  446 (537)
T 3fp2_A          368 NETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA  446 (537)
T ss_dssp             HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence            9999874 23445566666666 9999999999999987652111     112234455677777          99999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      |...|+.+.+.. +.+...+..+..++...|++++|.+.|+++.+..
T Consensus       447 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          447 AIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            999999999874 5577889999999999999999999999999865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=4.1e-20  Score=162.33  Aligned_cols=293  Identities=11%  Similarity=-0.058  Sum_probs=226.4

Q ss_pred             hhhccCChHHHHH-HHHHhhhccCC-CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC
Q 015673           34 KLRSEFDPDKALD-IYSSVSKHYAS-PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        34 ~l~~~~~~~~A~~-~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (403)
                      .+...|++++|++ .|++....... |..+...+..+...+...|++++|...|+++.. ..+.+...+..+..++...|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCc
Confidence            3445689999999 99988765511 222355677889999999999999999999985 45567778889999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH---------------HHH
Q 015673          112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL---------------LLK  176 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~  176 (403)
                      ++++|+..|+++.+.++. +..++..+...+...|++++|...++++.+..  +.+...+..               .+.
T Consensus       113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 1fch_A          113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG  189 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred             CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence            999999999999887643 78899999999999999999999999998642  222222221               233


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673          177 SHCDSGSSDKALELLNEMENKGVEV-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE  254 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~  254 (403)
                      .+...|++++|...|+++.+..... +..++..+..++...|++++|...++++.+.. +.+...+..+...+ ..|+++
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence            3448899999999999998863221 57889999999999999999999999998874 23455666666666 999999


Q ss_pred             HHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHccCChH
Q 015673          255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS----------PNATTFRTWIYHLCGSGNFD  324 (403)
Q Consensus       255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~  324 (403)
                      +|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+....          ....+|..+..++...|+.+
T Consensus       269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            9999999998864 346778999999999999999999999998764211          12678999999999999999


Q ss_pred             HHHHHHHH
Q 015673          325 KAYKVFKE  332 (403)
Q Consensus       325 ~a~~~~~~  332 (403)
                      +|..++++
T Consensus       348 ~A~~~~~~  355 (368)
T 1fch_A          348 AYGAADAR  355 (368)
T ss_dssp             GHHHHHTT
T ss_pred             hHHHhHHH
Confidence            99988764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=4.3e-20  Score=162.09  Aligned_cols=265  Identities=11%  Similarity=-0.025  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK  176 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  176 (403)
                      ...+..+...+.+.|++++|+..|+++.+..+. +..++..+...+...|++++|+..|+++.+.  .+.+..++..+..
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~  141 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV  141 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence            344777888888999999999999998886643 7888899999999999999999999998764  3446778889999


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCch----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHH
Q 015673          177 SHCDSGSSDKALELLNEMENKGVEVTT----------VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL-DVAAYNVRI  245 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll  245 (403)
                      +|...|++++|...|+++.+... .+.          ..+..+..++...|++++|...++++.+..... +...+..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999877521 122          223345778889999999999999998874331 456666666


Q ss_pred             hhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 015673          246 TNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFD  324 (403)
Q Consensus       246 ~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  324 (403)
                      ..+ ..|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            666 8899999999999988764 3467789999999999999999999999998764 446888999999999999999


Q ss_pred             HHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          325 KAYKVFKESVMVHKI-----------PDFNTVKLLVEGLVKKKKIKEAKGVIRT  367 (403)
Q Consensus       325 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  367 (403)
                      +|...|+++++....           .+..+|..+..++...|+.+.+..+.++
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999998765311           1357788899999999999888877655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=2.2e-16  Score=143.96  Aligned_cols=320  Identities=12%  Similarity=0.024  Sum_probs=179.0

Q ss_pred             cchhHHHHHhhhhc----cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCC
Q 015673           24 SSISVSKAKSKLRS----EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAK----SKRFSDIETLIESHKNDPKIT   95 (403)
Q Consensus        24 ~~~~~~~l~~~l~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~   95 (403)
                      ++.....+...+..    .+++++|+..|++..+.+     +..++..+...|..    .+++++|.+.|++....+   
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence            45566666666666    777888888888777665     34556667777777    777777887777776532   


Q ss_pred             CHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCc
Q 015673           96 QEPYLCNLIRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPD  167 (403)
Q Consensus        96 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  167 (403)
                      +...+..|...|..    .+++++|+..|++..+.|   +...+..|...|..    .+++++|...|++..+. +   +
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~  182 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---N  182 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---C
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---C
Confidence            34455566666766    667777777777776654   45566666666665    56677777777776553 2   4


Q ss_pred             hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchH
Q 015673          168 KISYGLLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVA  239 (403)
Q Consensus       168 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  239 (403)
                      ...+..+...|..    .+++++|.++|++..+.|   +...+..+...|..    .+++++|..+|++..+.+.   ..
T Consensus       183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~  256 (490)
T 2xm6_A          183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SI  256 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HH
T ss_pred             HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HH
Confidence            5566666666665    566667777666666543   33445555555554    5556666666665555421   11


Q ss_pred             HHHHHHhhh-c----CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc-----CChHHHHHHHHHHHHCCC------
Q 015673          240 AYNVRITNT-Y----GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN-----EMMDEAKKVYEGLEENGC------  303 (403)
Q Consensus       240 ~~~~ll~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~------  303 (403)
                      .+..+-..+ .    .++.++|...|++..+.|   +...+..+...|...     +++++|...|++..+.|.      
T Consensus       257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~  333 (490)
T 2xm6_A          257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQAN  333 (490)
T ss_dssp             HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            111111112 2    455555555555554432   233334444444443     444444444444444320      


Q ss_pred             --------------------------CCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673          304 --------------------------SPNATTFRTWIYHLCG----SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV  353 (403)
Q Consensus       304 --------------------------~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (403)
                                                ..+...+..+...|..    .+++++|...|++..+.+   ++..+..+...|.
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~  410 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY  410 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence                                      0133444444444444    455555555555555433   2344444555555


Q ss_pred             h----cCCHHHHHHHHHHHHH
Q 015673          354 K----KKKIKEAKGVIRTIKK  370 (403)
Q Consensus       354 ~----~g~~~~a~~~~~~~~~  370 (403)
                      +    .+++++|...|++..+
T Consensus       411 ~g~g~~~d~~~A~~~~~~A~~  431 (490)
T 2xm6_A          411 YGLGVERDYVQAWAWFDTAST  431 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHH
Confidence            4    4555555555555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=2.7e-19  Score=156.99  Aligned_cols=266  Identities=11%  Similarity=-0.079  Sum_probs=160.6

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                      ..+..++..+.+.|++++|...|+++.. ..+.+...+..+..++...|++++|+..|+++.+..+. +..++..+..+|
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  143 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY  143 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            3345555556666666666666666553 23344555555666666666666666666666554322 455566666666


Q ss_pred             HhcCCcCcHHHHHHHchhhCCCC--------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CchhhHHHHHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLS--------PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-VTTVTYTTVLNCL  213 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~  213 (403)
                      ...|++++|...|+++.+.....        .....+..+...+...|++++|.+.++++.+.... .+..++..+..+|
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            66666666666666655421000        01122334566777777777777777777765221 1466777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHH
Q 015673          214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK  292 (403)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  292 (403)
                      ...|++++|...++++.+.. +.+...+..+...+ ..|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus       224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence            77777777777777777653 22455555555555 7777788887777777653 234667788888888888888888


Q ss_pred             HHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673          293 KVYEGLEENGCS-----------PNATTFRTWIYHLCGSGNFDKAYKVFKE  332 (403)
Q Consensus       293 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~  332 (403)
                      ..|+++.+....           .+..+|..+..++...|+.+.+..+.++
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            888887653200           1256788888888888888888777654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=5.1e-19  Score=152.55  Aligned_cols=261  Identities=10%  Similarity=-0.034  Sum_probs=154.0

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      +...+...|++++|+.+|+++.+..+. +...+..+..++...|++++|...++++.+.  .+.+...+..+...+...|
T Consensus        27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcC
Confidence            344444444444444444444443221 3344444444444444444444444444332  1223344444444455555


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTV--------------LN-CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITN  247 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  247 (403)
                      ++++|.+.++++.+.. +.+...+..+              .. .+...|++++|...++++.+... .+...+..+...
T Consensus       104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~  181 (327)
T 3cv0_A          104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVL  181 (327)
T ss_dssp             CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence            5555555555444431 1112222221              12 25556666777777776666532 234444444444


Q ss_pred             h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 015673          248 T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKA  326 (403)
Q Consensus       248 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  326 (403)
                      + ..|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            4 6677777777777766653 3356677888888888899999999888887764 44677888888888999999999


Q ss_pred             HHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          327 YKVFKESVMVHKIP-----------DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       327 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+.++++.+.....           +..++..+..++.+.|++++|..++++..+
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99998887654211           467888889999999999999888876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=1.8e-18  Score=146.01  Aligned_cols=220  Identities=12%  Similarity=0.103  Sum_probs=118.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-CCchHHHHHHHHHHHhc
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-SPDKISYGLLLKSHCDS  181 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  181 (403)
                      +.++|...|+++.|+..++..    -+|+..++..+...+...++.++|++.++++... +. +-+...+..+...+...
T Consensus        40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~  114 (291)
T 3mkr_A           40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYD  114 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHC
Confidence            344444444444444433221    1233444444444444444555555555544332 22 22333344444555555


Q ss_pred             CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH---Hhhh-cCCChHHHH
Q 015673          182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR---ITNT-YGGDPERLK  257 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~-~~~~~~~a~  257 (403)
                      |++++|++.+++      +.+...+..++.++.+.|++++|.+.++++.+..  |+....+..   +..+ ..|++++|.
T Consensus       115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~  186 (291)
T 3mkr_A          115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY  186 (291)
T ss_dssp             TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence            555555555544      2344455555555555555555555555555542  332211111   1111 346666666


Q ss_pred             HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 015673          258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK-AYKVFKESVMV  336 (403)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~  336 (403)
                      .+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            6666666652 4466677777777777778888887777777654 4466677777777777777765 45677777665


Q ss_pred             C
Q 015673          337 H  337 (403)
Q Consensus       337 ~  337 (403)
                      .
T Consensus       265 ~  265 (291)
T 3mkr_A          265 H  265 (291)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=4.3e-16  Score=142.05  Aligned_cols=300  Identities=12%  Similarity=0.020  Sum_probs=233.1

Q ss_pred             HHHHHHHHHhhhccCCCCcchhhHHHHHHHHHh----cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc----cCCH
Q 015673           42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAK----SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ----AGMF  113 (403)
Q Consensus        42 ~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~  113 (403)
                      ..+++.++...+.+     +..++..+...|..    .+++++|...|++....   .+...+..|...|..    .+++
T Consensus        24 ~~~~~~~~~~a~~g-----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~   95 (490)
T 2xm6_A           24 NVNLEQLKQKAESG-----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDY   95 (490)
T ss_dssp             -CCHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             hHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCH
Confidence            33466666666655     45666778888888    89999999999998864   345677788899988    8999


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh----cCChH
Q 015673          114 DHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD----SGSSD  185 (403)
Q Consensus       114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  185 (403)
                      ++|.+.|++..+.|   +...+..|...|..    .+++++|..+|++..+. +   +...+..+...|..    .++++
T Consensus        96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~  168 (490)
T 2xm6_A           96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVTRDYV  168 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            99999999998864   66778888888888    78999999999999765 3   56778888888887    78999


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-c----CCChHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-Y----GGDPERL  256 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~----~~~~~~a  256 (403)
                      +|.++|++..+.|   +...+..+...|..    .+++++|...|++..+.+   +...+..+-..+ .    .+++++|
T Consensus       169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A  242 (490)
T 2xm6_A          169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS  242 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            9999999998874   67788888888988    899999999999998875   334444444444 3    7899999


Q ss_pred             HHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CChHHHH
Q 015673          257 KELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS-----GNFDKAY  327 (403)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~  327 (403)
                      ...|++..+.|   +...+..+...|..    .++.++|...|+...+.|   +...+..+...|...     ++.++|+
T Consensus       243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~  316 (490)
T 2xm6_A          243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI  316 (490)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence            99999998865   56677778888887    899999999999998765   455666677777766     7888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHh
Q 015673          328 KVFKESVMVHKIPDFNTVKLLVEGLVKKK---KIKEAKGVIRTIKKK  371 (403)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~  371 (403)
                      ..+++..+.+   +...+..+...|...|   ++++|.+.+++..+.
T Consensus       317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            8888777654   3345555555555544   566666666666553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=5.4e-18  Score=143.13  Aligned_cols=256  Identities=13%  Similarity=0.119  Sum_probs=206.4

Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS  184 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (403)
                      +-....|+++.|+..++......+.........+..+|...|+++.|+..++.     ..+|+..++..+...+...++.
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcH
Confidence            44557899999999998876543222234556778899999999999876644     2456788899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHH
Q 015673          185 DKALELLNEMENKGVEV-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDE  262 (403)
Q Consensus       185 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~  262 (403)
                      ++|++.++++...+..| +...+..+..++...|++++|++.+++      +.+...+..+...+ ..|++++|.+.++.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999998876434 566677788999999999999999987      34566677777777 99999999999999


Q ss_pred             HHHCCCCCChhcH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 015673          263 MRDAGLKPDTISY---NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI  339 (403)
Q Consensus       263 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  339 (403)
                      +.+.  .|+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++++.. +
T Consensus       156 ~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p  231 (291)
T 3mkr_A          156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S  231 (291)
T ss_dssp             HHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            9987  3553321   122334445699999999999999874 6788899999999999999999999999999876 6


Q ss_pred             CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCch
Q 015673          340 PDFNTVKLLVEGLVKKKKIKE-AKGVIRTIKKKFPPN  375 (403)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~  375 (403)
                      .++.++..++..+...|+.++ +.++++++.+..|.+
T Consensus       232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            788999999999999999876 678999998855544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.83  E-value=8.8e-19  Score=151.07  Aligned_cols=279  Identities=9%  Similarity=-0.071  Sum_probs=190.6

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      +...+......+...|++++|+.+|+.+.+..  |. +...+..++..+...|++++|...++++... .+.+...+..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l   95 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE-REEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAAL   95 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCCHHHHHHH
Confidence            44566777788888888888888888888776  43 4566677778888888888888888887643 44556667777


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH--HHHhc
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK--SHCDS  181 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~  181 (403)
                      ..++...|++++|++.++.+.+.... +...+..+...                       .|+......+..  .+...
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~  151 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAP  151 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHc
Confidence            88888888888888888887765422 22222221000                       011111112212  25667


Q ss_pred             CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHH
Q 015673          182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELI  260 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~  260 (403)
                      |++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+ ..|++++|...+
T Consensus       152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77888888888877653 3366777778888888888888888888877763 22344555555555 778888888888


Q ss_pred             HHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCChHHHHHH
Q 015673          261 DEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP-----------NATTFRTWIYHLCGSGNFDKAYKV  329 (403)
Q Consensus       261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~  329 (403)
                      +++.+.. +.+...+..+..+|...|++++|...++++.+.....           +...+..+..++...|+.++|..+
T Consensus       230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8877653 3356778888899999999999999999887653111           467888889999999999999988


Q ss_pred             HHHH
Q 015673          330 FKES  333 (403)
Q Consensus       330 ~~~~  333 (403)
                      +++.
T Consensus       309 ~~~~  312 (327)
T 3cv0_A          309 YAQN  312 (327)
T ss_dssp             TTCC
T ss_pred             HHHH
Confidence            8654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=2.5e-17  Score=149.71  Aligned_cols=341  Identities=11%  Similarity=-0.009  Sum_probs=233.6

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhcc-----C-CCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC------
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHY-----A-SPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND------   91 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~-~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------   91 (403)
                      ....|+.+...+...|++++|++.|+++++..     . .......+|..+..+|...|++++|...++++...      
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            35578889999999999999999999986531     0 01124566788999999999999999998876531      


Q ss_pred             -CCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH---HHhcCCcCcHHHHHHHchhhCCCC
Q 015673           92 -PKITQEPYLCNLIRSYGQ--AGMFDHAMRTFDQMDELGTPRSVISFNALLFA---CTRSRLYDKVPILFDEIPKKYNLS  165 (403)
Q Consensus        92 -~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~  165 (403)
                       .......++..+..++..  .+++++|+..|++..+..+. +...+..+..+   +...++.++|++.+++..+.  .+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p  206 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP  206 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence             122334556655555544  45799999999999886643 45556555554   44567889999999988764  23


Q ss_pred             CchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH
Q 015673          166 PDKISYGLLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAY  241 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  241 (403)
                      .+...+..+...+..    .+++++|.+++++.... .+.+..++..+...|...|++++|...+++..+.... +...+
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence            455566666555544    46788999999998876 3457788999999999999999999999999887432 23333


Q ss_pred             HHHHhhh--------------------cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          242 NVRITNT--------------------YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       242 ~~ll~~~--------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      ..+-..+                    ..+..+.|...++...+.+ +.+..++..+...|...|++++|...|++..+.
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            3222111                    1133567788888877764 346678889999999999999999999999887


Q ss_pred             CCCCCHH--HHHHHHH-HHHccCChHHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHhc
Q 015673          302 GCSPNAT--TFRTWIY-HLCGSGNFDKAYKVFKESVMVH-----------------------KIPDFNTVKLLVEGLVKK  355 (403)
Q Consensus       302 ~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~  355 (403)
                      ...+...  .+..+.. .....|+.++|+..|++.++..                       -+.+..+|..+..+|...
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~  443 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN  443 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            4332221  2223332 3457899999999998877643                       134567888899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 015673          356 KKIKEAKGVIRTIKK  370 (403)
Q Consensus       356 g~~~~a~~~~~~~~~  370 (403)
                      |++++|++.|++..+
T Consensus       444 g~~~~A~~~y~kALe  458 (472)
T 4g1t_A          444 EKMQQADEDSERGLE  458 (472)
T ss_dssp             HHCC-----------
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999886

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=6.7e-16  Score=142.25  Aligned_cols=357  Identities=11%  Similarity=0.079  Sum_probs=202.1

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      +...|..++. +.+.|++++|..+|+++.+..  |. +...|...+..+.+.|++++|..+|+++....  |+...|..+
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~   85 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY   85 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence            4455666666 356677777777777777766  43 44556667777777777777777777776432  345555544


Q ss_pred             HHHH-hccCCHHHHHH----HHHHHHh-CCCCC-cHHHHHHHHHHHHh---------cCCcCcHHHHHHHchhhC-----
Q 015673          104 IRSY-GQAGMFDHAMR----TFDQMDE-LGTPR-SVISFNALLFACTR---------SRLYDKVPILFDEIPKKY-----  162 (403)
Q Consensus       104 ~~~~-~~~~~~~~A~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~-----  162 (403)
                      +... ...|+.+.|.+    +|+.... .|..| +...|...+....+         .|+++.|..+|++.++..     
T Consensus        86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~  165 (530)
T 2ooe_A           86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE  165 (530)
T ss_dssp             HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred             HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence            4322 23344444433    4444432 12222 33444444444332         344555555555544310     


Q ss_pred             ---------------------------------------------------CCCCc--------hHHHHHHHHHHHhc--
Q 015673          163 ---------------------------------------------------NLSPD--------KISYGLLLKSHCDS--  181 (403)
Q Consensus       163 ---------------------------------------------------~~~~~--------~~~~~~l~~~~~~~--  181 (403)
                                                                         .++|+        ...|...+......  
T Consensus       166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~  245 (530)
T 2ooe_A          166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL  245 (530)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence                                                               01111        01122222111110  


Q ss_pred             --CCh----HHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCchHHH
Q 015673          182 --GSS----DKALELLNEMENKGVEVTTVTYTTVLNCLYK-------QGNAE-------EAERLWSEMEKKGVDLDVAAY  241 (403)
Q Consensus       182 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~  241 (403)
                        ++.    +.+..+|+++... .+.+...|..++..+.+       .|+++       +|..++++..+.-.+.+...+
T Consensus       246 ~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~  324 (530)
T 2ooe_A          246 RTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY  324 (530)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence              111    2444555555554 23355666666666654       57766       788888887752122234555


Q ss_pred             HHHHhhh-cCCChHHHHHHHHHHHHCCCCCC-h-hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 015673          242 NVRITNT-YGGDPERLKELIDEMRDAGLKPD-T-ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH-L  317 (403)
Q Consensus       242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~  317 (403)
                      ..+...+ ..|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY  401 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence            5555555 778888888888888775  443 2 467777777777888888888888877653 2223333222222 3


Q ss_pred             HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--Cch-hHHHHHHHHHHhCCCC
Q 015673          318 CGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF--PPN-VLRAWKKVEEELGLVP  391 (403)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~  391 (403)
                      ...|+.++|..+|++.++.. +.++..+..++..+.+.|+.++|..+|++..+..  +|+ ....|...+.....+|
T Consensus       402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G  477 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  477 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred             HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence            35788888888888877654 4567778888888888888888888888887643  232 2345655444433333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.3e-17  Score=134.40  Aligned_cols=239  Identities=10%  Similarity=0.037  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--Cc----hhhH
Q 015673          133 ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE--VT----TVTY  206 (403)
Q Consensus       133 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~  206 (403)
                      ..+..+...+...|++++|..+|++..+. .  .+...+..+..++...|++++|.+.++++.+....  ++    ..++
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            34555555566666666666666666554 2  45555666666666666666666666665543110  11    3566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc
Q 015673          207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN  285 (403)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  285 (403)
                      ..+..++...|++++|...++++.+..  |+..       .+ ..|++++|...++.+.... +.+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            666667777777777777777766642  3321       12 4566777777777777653 22456778888889999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          286 EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      |++++|...++++.+.. +.+..++..+..++...|++++|+..++++++.. +.+...+..+..++.+.|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999988765 4567889999999999999999999999998876 567888999999999999999999999


Q ss_pred             HHHHHhC-----CchhHHHHHHHHHH
Q 015673          366 RTIKKKF-----PPNVLRAWKKVEEE  386 (403)
Q Consensus       366 ~~~~~~~-----~~~~~~~~~~l~~~  386 (403)
                      ++..+..     .|+....+..+.++
T Consensus       231 ~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          231 DAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHhChhhcCCCchHHHHHHHHHh
Confidence            9988744     26666677766554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=2.1e-15  Score=138.97  Aligned_cols=343  Identities=7%  Similarity=-0.048  Sum_probs=242.5

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHH-HHHhcCCcchHHH----HHHHhhcC-C-CC
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVR-RLAKSKRFSDIET----LIESHKND-P-KI   94 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~~~~~~a~~----~~~~~~~~-~-~~   94 (403)
                      |.+...|...+..+.+.|++++|..+|++++...  |  +...|...+. .....|+++.|.+    +|+..... + .+
T Consensus        43 P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p--~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~  118 (530)
T 2ooe_A           43 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L--HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI  118 (530)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C--CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C--ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc
Confidence            4456778889999999999999999999999987  6  3445555554 2345677777765    66665432 2 23


Q ss_pred             CCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH-------------------------
Q 015673           95 TQEPYLCNLIRSYGQ---------AGMFDHAMRTFDQMDELGTPRSVISFNALLF-------------------------  140 (403)
Q Consensus        95 ~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-------------------------  140 (403)
                      .+...|...+....+         .|+++.|..+|++..+.........|.....                         
T Consensus       119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~  198 (530)
T 2ooe_A          119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR  198 (530)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence            456677777766544         6788888888888877311111122221111                         


Q ss_pred             ----------------------------------------HHHhc----CCc----CcHHHHHHHchhhCCCCCchHHHH
Q 015673          141 ----------------------------------------ACTRS----RLY----DKVPILFDEIPKKYNLSPDKISYG  172 (403)
Q Consensus       141 ----------------------------------------~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~  172 (403)
                                                              .....    ++.    ..+..+|++....  .+.+...|.
T Consensus       199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~  276 (530)
T 2ooe_A          199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWY  276 (530)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHH
Confidence                                                    00000    011    1344556666542  334566777


Q ss_pred             HHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 015673          173 LLLKSHCD-------SGSSD-------KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV  238 (403)
Q Consensus       173 ~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  238 (403)
                      ..+..+.+       .|+++       +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.  .|+.
T Consensus       277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~  354 (530)
T 2ooe_A          277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDID  354 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSC
T ss_pred             HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccC
Confidence            77777765       79987       89999999987324456888999999999999999999999999986  4442


Q ss_pred             --HHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673          239 --AAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTC-YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI  314 (403)
Q Consensus       239 --~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  314 (403)
                        ..|......+ +.|+++.|..+|++..+.. +.+...|...+.. +...|+.++|..+|+...+.. +.+...|..++
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~  432 (530)
T 2ooe_A          355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYI  432 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence              3566666666 7899999999999998762 2222333322222 346899999999999988763 44688999999


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHK-IP--DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      ..+.+.|+.++|..+|++.+..+. .|  ....|...+......|+.+.+..+.+++.+.+|.
T Consensus       433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            999999999999999999998742 23  2457888888888999999999999999886653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=3.2e-18  Score=147.95  Aligned_cols=279  Identities=10%  Similarity=0.041  Sum_probs=82.0

Q ss_pred             cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM  117 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  117 (403)
                      .|+.++|.+.++++..        +.+|..++.++.+.|++++|++.|.+.      ++...|..++..+...|++++|+
T Consensus        16 ~~~ld~A~~fae~~~~--------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           16 IGNLDRAYEFAERCNE--------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            4455555555555511        124555556666666666666555432      23334555555555556666666


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673          118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK  197 (403)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (403)
                      ..++...+.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|+.++..|...|.+++|..+|..+   
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence            555544442  2334555555555666555555544442        134445556666666666666666665543   


Q ss_pred             CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHH
Q 015673          198 GVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYN  276 (403)
Q Consensus       198 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (403)
                            ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+| ..|+++.|......+     ..++.-..
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~  211 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE  211 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence                  34555556666666666666555555      1455555555555 555665553333321     11222233


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--CChHHHHHHHHHHHhCCCCC------CHHHHHHH
Q 015673          277 FLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS--GNFDKAYKVFKESVMVHKIP------DFNTVKLL  348 (403)
Q Consensus       277 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l  348 (403)
                      .++..|.+.|.+++|..+++...... +-....|+-+..+|++-  ++..+.++.|..-  .+++|      +...|..+
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~  288 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAEL  288 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence            45555666666666666665555443 33444555554444442  2233333333211  12222      23345555


Q ss_pred             HHHHHhcCCHHHHHH
Q 015673          349 VEGLVKKKKIKEAKG  363 (403)
Q Consensus       349 ~~~~~~~g~~~~a~~  363 (403)
                      +..|.+.++++.|..
T Consensus       289 ~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          289 VFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHhhchHHHHHH
Confidence            555555566555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=4.5e-18  Score=147.04  Aligned_cols=272  Identities=11%  Similarity=0.110  Sum_probs=123.1

Q ss_pred             HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673           73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP  152 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  152 (403)
                      .+.|++++|.+.++++..      +.+|..|+.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|+
T Consensus        14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            366889999999998832      248999999999999999999999763      57789999999999999999999


Q ss_pred             HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      .+++...+.   .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|++++|...|..+   
T Consensus        82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---  148 (449)
T 1b89_A           82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred             HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence            988777652   4567889999999999999999998885       367789999999999999999999999976   


Q ss_pred             CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673          233 GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR  311 (403)
Q Consensus       233 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  311 (403)
                            ..|..+...+ +.|+++.|.+.+.++      .++.+|..++.+|...|+++.|......+     ..++....
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~  211 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE  211 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence                  3677888888 999999999999988      27899999999999999999996655442     33444566


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCc-----hhHHHHHHHH
Q 015673          312 TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK--FPP-----NVLRAWKKVE  384 (403)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-----~~~~~~~~l~  384 (403)
                      .++..|.+.|++++|+.+++..+... +-....|+.+.-.|++- ++++..+.++...++  .||     .....|..+.
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            78899999999999999999998766 66778888887777764 345555555544443  333     3334666665


Q ss_pred             HHhC
Q 015673          385 EELG  388 (403)
Q Consensus       385 ~~~~  388 (403)
                      -.|.
T Consensus       290 ~ly~  293 (449)
T 1b89_A          290 FLYD  293 (449)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=161.17  Aligned_cols=118  Identities=13%  Similarity=0.176  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDE---LGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLL  174 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  174 (403)
                      .+|++||++|++.|++++|.++|+.|.+   .|+.||..+||+||.+|++.|++++|.++|++|.+. |+.||..||+++
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence            4689999999999999999999988753   578899999999999999999999999999999776 999999999999


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc
Q 015673          175 LKSHCDSGSS-DKALELLNEMENKGVEVTTVTYTTVLNCLYKQ  216 (403)
Q Consensus       175 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  216 (403)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence            9999999985 78899999999999999999999888655543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=1.1e-16  Score=129.12  Aligned_cols=200  Identities=14%  Similarity=0.006  Sum_probs=126.5

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      |+++..+..+...+...|++++|+..|+++++.+  |. +..++..+...+.+.|++++|...+++... ..|.+...+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQ-DPEALYWLARTQLKLGLVNPALENGKTLVA-RTPRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHH
Confidence            4455667777777777788888888887777776  43 455666777777777777777777777764 3445556667


Q ss_pred             HHHHHHhcc-----------CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHH
Q 015673          102 NLIRSYGQA-----------GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKIS  170 (403)
Q Consensus       102 ~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  170 (403)
                      .+..++...           |++++|+..|++..+..+. +...+..+..++...|++++|+..|++..+. .  .+...
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~  153 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEI  153 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHH
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHH
Confidence            777777777           7777777777777665432 5666667777777777777777777777665 2  45666


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME  230 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  230 (403)
                      +..+..++...|++++|...|+++.+. .+.+...+..+..++...|++++|...+++..
T Consensus       154 ~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            677777777777777777777777665 23355666666777777777777777666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=2.5e-14  Score=138.10  Aligned_cols=319  Identities=12%  Similarity=0.083  Sum_probs=210.4

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCC-cchhhHHHHHH---------------------------HH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPV-SSRYAQDLTVR---------------------------RL   72 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~~~l~~---------------------------~~   72 (403)
                      .+.++......+..+...|.+.+|+++++++.-.+ ++. .....-+.++.                           .+
T Consensus       981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A          981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred             cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence            34455566777889999999999999999998443 111 12222233443                           34


Q ss_pred             HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHH
Q 015673           73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVP  152 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  152 (403)
                      ...|.+++|..+|++..     ......+.++   ...+++++|.++.++.      -+..+|..+..++...|++++|+
T Consensus      1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred             HhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            44555555555555542     1111112221   1445566666665544      24667777777888888888888


Q ss_pred             HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ..|.+.       -|...|..++.++.+.|++++|.++|....+..  +++...+.++.+|++.+++++.....    + 
T Consensus      1126 dsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A         1126 DSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred             HHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence            877654       266677778888888888888888887766653  23333445777777777777533332    2 


Q ss_pred             CCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015673          233 GVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFR  311 (403)
Q Consensus       233 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  311 (403)
                        .++...+..+-..+ ..|++++|..+|...         ..|..+..+|.+.|++++|.+.+++.      .+..+|.
T Consensus      1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A         1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence              23444444444445 778888888888874         36777888888888888888888765      2557777


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          312 TWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      .+..+|...|++..|......     +..++..+..++..|.+.|.+++|+.+++.... ..+.....|..+...+...+
T Consensus      1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~-LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cChhHhHHHHHHHHHHHhCC
Confidence            777778888888777776543     345677888899999999999999999988875 44666667766666665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=7.3e-16  Score=124.40  Aligned_cols=198  Identities=13%  Similarity=-0.013  Sum_probs=123.2

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673          166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI  245 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  245 (403)
                      ++...+..+...+.+.|++++|...|++..+. -+.+...+..+..++.+.|++++|+..+++..+.... +...+..+-
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            44555556666666666666666666666554 2234555566666666666666666666666554311 222333333


Q ss_pred             hhh-cC-----------CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673          246 TNT-YG-----------GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW  313 (403)
Q Consensus       246 ~~~-~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  313 (403)
                      ..+ ..           |++++|...+++..+.. +-+...+..+..++...|++++|+..|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            333 44           77788888888777653 2246677778888888888888888888888776  677788888


Q ss_pred             HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          314 IYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      ..++...|++++|+..|+++++.. +.+...+..+..++...|++++|.+.+++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            888888888888888888888765 5667788888888888888888888887764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.73  E-value=5.3e-18  Score=158.32  Aligned_cols=119  Identities=18%  Similarity=0.204  Sum_probs=86.2

Q ss_pred             CchhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHH
Q 015673          201 VTTVTYTTVLNCLYKQGNAEEAERLWSEMEK---KGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYN  276 (403)
Q Consensus       201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (403)
                      .-..||+++|.+|++.|++++|.++|.+|.+   .|+.||..+||++|.++ +.|++++|.++|++|.+.|+.||..|||
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            3456888888888888888888888877654   45677777777777777 7777777777777777777777777777


Q ss_pred             HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015673          277 FLMTCYCKNEMM-DEAKKVYEGLEENGCSPNATTFRTWIYHLCG  319 (403)
Q Consensus       277 ~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (403)
                      +||.++++.|+. ++|.++|++|.+.|+.||..+|++++..+.+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            777777776663 5667777777777777777777766654443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1e-15  Score=127.10  Aligned_cols=223  Identities=13%  Similarity=0.064  Sum_probs=147.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC-CCCc----hHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPD----KISYGL  173 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~  173 (403)
                      .+..+...+...|++++|+..|+.+.+..  .+..++..+..++...|++++|...+++..+... ..++    ...+..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            45556666666666666666666666555  4566666666666666666666666666554210 0011    356666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCC
Q 015673          174 LLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGG  251 (403)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~  251 (403)
                      +...+...|++++|...|+++.+..  |+       ...+...|++++|...++.+...  .|+ ...+..+...+ ..|
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence            7777777777777777777776642  23       23455566777777777777665  232 23333333344 777


Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK  331 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (403)
                      ++++|...++++.+.. +.+..++..+..+|...|++++|...++...+.. +.+...+..+..++...|++++|...++
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7777777777777653 3356777788888888888888888888887764 4457778888888888888888888888


Q ss_pred             HHHhC
Q 015673          332 ESVMV  336 (403)
Q Consensus       332 ~~~~~  336 (403)
                      ++.+.
T Consensus       232 ~a~~~  236 (258)
T 3uq3_A          232 AARTK  236 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.72  E-value=1.6e-15  Score=127.07  Aligned_cols=246  Identities=11%  Similarity=0.045  Sum_probs=129.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc--hHHHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD--KISYGLLLKS  177 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~  177 (403)
                      +......+...|++++|+..|+.+.+..+. +...+..+..++...|++++|+..+++..+. ...++  ...|..+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKI   83 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHH
Confidence            344556666667777777777766664432 3445666666666666666666666666542 21111  2336666666


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHH
Q 015673          178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLK  257 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~  257 (403)
                      +...|++++|.+.|++..+.. +.+..++..+..+|...|++++|...+++..+..  |+                    
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~--------------------  140 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TT--------------------  140 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CC--------------------
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CC--------------------
Confidence            667777777777777666642 2345566666666666777777766666665542  21                    


Q ss_pred             HHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHH
Q 015673          258 ELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN---FDKAYKVFKESV  334 (403)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~  334 (403)
                                   +...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+   +++|...++++.
T Consensus       141 -------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          141 -------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence                         22222223311112224444444444444432 2223344444444444444   444555554444


Q ss_pred             hCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          335 MVH-KIPD------FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       335 ~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      +.. -.|+      ..+|..+...|...|++++|.+.+++..+.. |+...+|..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence            321 0111      2455556666666666666666666666533 333445554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.71  E-value=1.1e-15  Score=128.24  Aligned_cols=246  Identities=11%  Similarity=0.006  Sum_probs=143.5

Q ss_pred             ccCCHHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          109 QAGMFDHAMRTFDQMDELGTP---RSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                      ..|++++|+..|+.+.+....   .+..++..+...+...|++++|...|+++.+.  .+.+...+..+...+...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence            345666666666666654211   13445556666666666666666666666543  2334556666666666777777


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMR  264 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~  264 (403)
                      +|.+.|+++.+. .+.+...+..+..++...|++++|...++++.+..  |+.......+..+ ..|++++|...++...
T Consensus        95 ~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            777777766664 22345666666677777777777777777766642  3333333333333 5567777777776665


Q ss_pred             HCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 015673          265 DAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS---PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD  341 (403)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (403)
                      ... +++...+ .++..+...++.++|...+....+....   .+...+..+...+...|++++|...|+++++.. +.+
T Consensus       172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~  248 (275)
T 1xnf_A          172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN  248 (275)
T ss_dssp             HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT
T ss_pred             hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh
Confidence            542 2233333 3556666667777777777766543210   014566777777888888888888888877654 223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          342 FNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      ..   ....++...|++++|.+.+
T Consensus       249 ~~---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FV---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CH---HHHHHHHHHHHHHHC----
T ss_pred             HH---HHHHHHHHHHHHHhhHHHH
Confidence            22   2345666677777776655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.71  E-value=5.9e-15  Score=128.75  Aligned_cols=249  Identities=8%  Similarity=-0.010  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-cCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL-YDKVPILFDEIPKKYNLSPDKISYGLLLK  176 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  176 (403)
                      ..|..+..++...|++++|+..|+++++..+. +..+|+.+..++...|+ +++|+..|+++++.  .+-+...|+.+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            34555666666666666666666666665432 45566666666666664 66666666666542  2234455666666


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHH
Q 015673          177 SHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERL  256 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a  256 (403)
                      ++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++..                       
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-----------------------  230 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----------------------  230 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------------
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------------------
Confidence            6666666666666666665542 2345555556666666666555555555555542                       


Q ss_pred             HHHHHHHHHCCCCCChhcHHHHHHHHHh-cCChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHH
Q 015673          257 KELIDEMRDAGLKPDTISYNFLMTCYCK-NEMMDEA-----KKVYEGLEENGCSPNATTFRTWIYHLCGSG--NFDKAYK  328 (403)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~  328 (403)
                                  +-+...|+.+..++.. .|..++|     +..+++.++.. +-+...|..+...+...|  ++++|++
T Consensus       231 ------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~  297 (382)
T 2h6f_A          231 ------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLN  297 (382)
T ss_dssp             ------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred             ------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHH
Confidence                        2244556666666666 4444555     47777777654 445667777777777777  5788888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHhCCchhHHHHHHHHHHhC
Q 015673          329 VFKESVMVHKIPDFNTVKLLVEGLVKKK---------KIKEAKGVIRTIKKKFPPNVLRAWKKVEEELG  388 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (403)
                      .+.++ +.. +.+...+..+..+|.+.|         ..++|.++++++.....|.....|..+...+.
T Consensus       298 ~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          298 QLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            88887 333 566778888888888764         25889999998833477777778877765543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.71  E-value=6.7e-15  Score=123.23  Aligned_cols=252  Identities=8%  Similarity=-0.020  Sum_probs=170.0

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC--HHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ--EPYLCNL  103 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l  103 (403)
                      ..+......+...|++++|+..|+.+.+..  |. +...+..+...+...|++++|...++++...+..+.  ...|..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            455667788888999999999999998877  43 445677788888899999999999998876321111  2236778


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      ..++...|++++|+..|++..+..+. +..++..+...+...|++++|...|++..+.  .+.+...+..+...+...++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence            88888999999999999988876543 6678888888888888888888888888753  33455666666634444558


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCchHHHHHHHhhhcCCChHHHHHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN---AEEAERLWSEMEKKGV-DLDVAAYNVRITNTYGGDPERLKEL  259 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~a~~~  259 (403)
                      +++|.+.|+++.+. .+.+...+..+..++...|+   +++|...+++..+... .|+..  .                 
T Consensus       158 ~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~-----------------  217 (272)
T 3u4t_A          158 YVKADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY--K-----------------  217 (272)
T ss_dssp             HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG--H-----------------
T ss_pred             HHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc--h-----------------
Confidence            88888888888775 23345666677777777776   6667777766654310 01100  0                 


Q ss_pred             HHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015673          260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTW  313 (403)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  313 (403)
                               ..-..+|..+...|...|++++|...++++.+.. +.+...+..+
T Consensus       218 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l  261 (272)
T 3u4t_A          218 ---------DELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGL  261 (272)
T ss_dssp             ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence                     0001345556666666666666666666666553 3334444333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=7.7e-14  Score=116.89  Aligned_cols=229  Identities=13%  Similarity=0.031  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHH
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYG  172 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  172 (403)
                      ...+..+...+...|++++|+..|++..+.   -+..++..+...|..    .+++++|...|++..+. +   +...+.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~   78 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH   78 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence            334445555555555555555555555551   233444445555555    55555555555555432 1   344444


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673          173 LLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT  248 (403)
Q Consensus       173 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  248 (403)
                      .+...|..    .+++++|++.|++..+.+   +...+..+...|..                               ..
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-------------------------------~~  124 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD-------------------------------GK  124 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-------------------------------CS
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc-------------------------------CC
Confidence            45555554    555555555555554432   33444444444444                               00


Q ss_pred             -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 015673          249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG----  319 (403)
Q Consensus       249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  319 (403)
                       ..+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    
T Consensus       125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~  198 (273)
T 1ouv_A          125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA  198 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred             CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence             0455555555555554443   33445555555555    667777777777766653   44556666666666    


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCch
Q 015673          320 SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .+++++|+..|++..+.+   +...+..+...|.+    .+++++|.+.+++..+..+++
T Consensus       199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            777777777777776654   25566666777777    777777777777776654443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.70  E-value=3.9e-15  Score=123.21  Aligned_cols=200  Identities=6%  Similarity=-0.102  Sum_probs=115.7

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..+...+...|++++|++.|+++.+..  |. ...++..++..+...|++++|.+.++++... .+.+...+..+..
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~  113 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS-SADAHAALAVVFQTEMEPKLADEEYRKALAS-DSRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHH
Confidence            345555566666666666666666666655  32 3445555666666666666666666665532 2334455555666


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS  184 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  184 (403)
                      ++...|++++|++.|+++.+.+..| +...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence            6666666666666666665521222 3445555566666666666666666666543  123455556666666666666


Q ss_pred             HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ++|...++.+.+. .+.+...+..+..++...|++++|.+.++++.+.
T Consensus       192 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          192 VPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6666666666554 2234455555566666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.70  E-value=2.5e-14  Score=118.31  Aligned_cols=202  Identities=10%  Similarity=-0.018  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-  248 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-  248 (403)
                      .+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+... .+...+..+...+ 
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~  116 (252)
T 2ho1_A           39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence            34444444445555555555555444431 22344444455555555555555555555544321 1223333333333 


Q ss_pred             cCCChHHHHHHHHHHHHCCCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY  327 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (403)
                      ..|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555554421223 34566677778888888888888888877664 445777888888888888888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..++++.+.. +.+...+..+...+...|++++|.+.++++.+..|.+
T Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            8888887754 5667778888888888888888888888888755544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.70  E-value=2.6e-15  Score=123.49  Aligned_cols=209  Identities=14%  Similarity=0.077  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT  248 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  248 (403)
                      ..|..+...+...|++++|...|+++.+. .+.+...+..+..++...|++++|...++++.+... .+...+..+...+
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence            33444455555555555555555555543 222444555555555555555555555555554421 1233333333333


Q ss_pred             -cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 015673          249 -YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAY  327 (403)
Q Consensus       249 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (403)
                       ..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence             5566666666666555543 2345567777777888888888888888877654 446777778888888888888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673          328 KVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV  383 (403)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  383 (403)
                      ..++++.+.. +.+..++..+..+|...|++++|...++++.+..|.+ ...|..+
T Consensus       180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~  233 (243)
T 2q7f_A          180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH-MLALHAK  233 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch-HHHHHHH
Confidence            8888887765 5567788888888888888888888888887744433 3355443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.70  E-value=3e-14  Score=115.45  Aligned_cols=205  Identities=10%  Similarity=-0.047  Sum_probs=151.8

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 015673          167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT  246 (403)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  246 (403)
                      +...+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence            45566777777777777777777777776652 33566777777777777788888777777776532 23444444444


Q ss_pred             hh-cC-CChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 015673          247 NT-YG-GDPERLKELIDEMRDAGLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF  323 (403)
Q Consensus       247 ~~-~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  323 (403)
                      .+ .. |++++|...++.+.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            55 77 788888888887776222232 5667778888889999999999999888764 44577888888899999999


Q ss_pred             HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          324 DKAYKVFKESVMVHKI-PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+..|.+
T Consensus       164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~  215 (225)
T 2vq2_A          164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS  215 (225)
T ss_dssp             HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence            99999999988765 4 677778888888889999999999999887755444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.69  E-value=2.2e-16  Score=132.52  Aligned_cols=255  Identities=12%  Similarity=-0.009  Sum_probs=132.1

Q ss_pred             hhhccCChHHHHHHHHHhhhccCC-CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYAS-PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGM  112 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (403)
                      .+...|++++|+..|+.+.+.... ++....++..++..+...|++++|...|+++.. ..+.+...+..+..++...|+
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHTTC
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHccC
Confidence            445567777777777777765311 112445556666677777777777777776653 233445556666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 015673          113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLN  192 (403)
Q Consensus       113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  192 (403)
                      +++|+..|+++.+..+. +..++..+...+...|++++|...|+++.+.   .|+.......+..+...|++++|...++
T Consensus        93 ~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~  168 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK  168 (275)
T ss_dssp             HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence            66666666666654322 4455555555555555555555555555432   1222222223333334455555555554


Q ss_pred             HHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCCh
Q 015673          193 EMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDT  272 (403)
Q Consensus       193 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~  272 (403)
                      +.... .+++...+ .++..+...++.++|...+....+..  |..                             .+.+.
T Consensus       169 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-----------------------------~~~~~  215 (275)
T 1xnf_A          169 QHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSL-----------------------------AEHLS  215 (275)
T ss_dssp             HHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHH-----------------------------HHHHH
T ss_pred             HHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccc-----------------------------ccccc
Confidence            44433 12222222 23333444444444444444433221  000                             00013


Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVF  330 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  330 (403)
                      ..+..+..+|...|++++|...|+++.+..  |+.  +.....++...|++++|++.+
T Consensus       216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            556666777777777777777777777653  321  222244556666777766655

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.69  E-value=8.9e-14  Score=116.53  Aligned_cols=222  Identities=10%  Similarity=-0.065  Sum_probs=164.7

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHHH
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISFN  136 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~  136 (403)
                      +..++..+...+...|++++|...|++...   +.+...+..+...+..    .+++++|+..|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            556777889999999999999999999986   3455677889999999    999999999999999875   788899


Q ss_pred             HHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHH
Q 015673          137 ALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTT  208 (403)
Q Consensus       137 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  208 (403)
                      .+...|..    .+++++|+..|++..+. +   +...+..+...|..    .+++++|+..|++..+.+   +...+..
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            99999999    99999999999999875 3   77888999999999    999999999999998875   4566777


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-c----CCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 015673          209 VLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-Y----GGDPERLKELIDEMRDAGLKPDTISYNFLM  279 (403)
Q Consensus       209 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  279 (403)
                      +...|..    .+++++|...|++..+.+   +...+..+-..+ .    .+++++|...+++..+.+   +...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            7777777    778888888887776653   222222222222 3    455555555555555442   133444444


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHC
Q 015673          280 TCYCK----NEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       280 ~~~~~----~~~~~~A~~~~~~~~~~  301 (403)
                      ..|..    .+++++|...|++..+.
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            45544    45555555555555444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.69  E-value=1.3e-15  Score=125.22  Aligned_cols=205  Identities=10%  Similarity=-0.004  Sum_probs=152.9

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL  100 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  100 (403)
                      ....+..+..+...+...|++++|+..|+++.+..  |. +...+..++..+...|++++|...++++... .+.+...+
T Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~   94 (243)
T 2q7f_A           19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE-DAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAY   94 (243)
T ss_dssp             -----------------------CCTTHHHHHTTC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHH
Confidence            33455667778888999999999999999999877  43 5667788889999999999999999998753 44567778


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..+..++...|++++|++.|+++.+... .+...+..+...+...|++++|...++++.+.  .+.+...+..+...+..
T Consensus        95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A           95 YGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence            8899999999999999999999888654 36778888889999999999999999998764  34467788888999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      .|++++|.+.++++.+.. +.+..++..+..+|...|++++|...++++.+..
T Consensus       172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999999988763 3467788889999999999999999999988863

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.68  E-value=1.1e-14  Score=118.00  Aligned_cols=202  Identities=10%  Similarity=-0.050  Sum_probs=119.0

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...+..++..+...|++++|++.|+.+.+..  |. +...+..++..+...|++++|...++++... .+.+...+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~   83 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK-NELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHH
Confidence            4455666666667777777777777776665  32 3445556666666667777777666666532 333455566666


Q ss_pred             HHHhcc-CCHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          105 RSYGQA-GMFDHAMRTFDQMDELGTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       105 ~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      .++... |++++|+..++.+.+.+..| +...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence            666666 66666666666666522112 2455556666666666666666666666542  2233555566666666666


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus       162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            66666666666655421134445555555556666666666666665543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.68  E-value=1.7e-14  Score=125.80  Aligned_cols=167  Identities=10%  Similarity=-0.033  Sum_probs=143.0

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALL  139 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll  139 (403)
                      ...+|..+...+...|++++|+..++++.. ..+.+...|+.+..++...|+ +++|+..|+++.+..+. +...|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            456678888999999999999999999985 556677889999999999997 99999999999997765 788999999


Q ss_pred             HHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh-cCC
Q 015673          140 FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK-QGN  218 (403)
Q Consensus       140 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~  218 (403)
                      .++...|++++|+..|+++++.  -+-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|.
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999873  34577889999999999999999999999999874 3478899999999988 565


Q ss_pred             HHHHH-----HHHHHHHHc
Q 015673          219 AEEAE-----RLWSEMEKK  232 (403)
Q Consensus       219 ~~~a~-----~~~~~~~~~  232 (403)
                      .++|.     ..+++.+..
T Consensus       251 ~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence            57763     556666554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=1.8e-13  Score=124.18  Aligned_cols=304  Identities=12%  Similarity=0.004  Sum_probs=215.0

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhc--------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKN--------DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL-----G  127 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~  127 (403)
                      ....|+.+...+...|++++|++.|++...        ...+....+|..+..+|...|++++|...++++.+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            456788999999999999999999988643        123445567889999999999999999999887542     1


Q ss_pred             -CC-CcHHHHHHHHHHHHh--cCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCC
Q 015673          128 -TP-RSVISFNALLFACTR--SRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS---HCDSGSSDKALELLNEMENKGVE  200 (403)
Q Consensus       128 -~~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~  200 (403)
                       .. ....++..+..++..  .+++++|+..|++..+.  .|-+...+..+..+   +...++.++|++.+++..+.+ +
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence             11 134566666555554  45789999999999864  22334444444444   445678889999999988763 3


Q ss_pred             CchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcH
Q 015673          201 VTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISY  275 (403)
Q Consensus       201 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~  275 (403)
                      .+..++..+...+..    .|++++|.+.+++...... .+...+..+-..+ ..|++++|...+++..+.. +.+..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence            456666666655554    4678899999999888743 3444555555556 9999999999999998873 3345566


Q ss_pred             HHHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673          276 NFLMTCYCKN-------------------EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       276 ~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (403)
                      ..+..+|...                   +..+.|...++...+.. +.+...+..+...+...|++++|+..|++.++.
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            6666655432                   33567888888877664 445567888999999999999999999999987


Q ss_pred             CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 015673          337 HKIPDFN--TVKLLVE-GLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       337 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ...+...  .+..+.. .+...|++++|+..+++..+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6333221  2333332 34578999999999988876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.67  E-value=2.2e-14  Score=128.99  Aligned_cols=313  Identities=11%  Similarity=0.003  Sum_probs=147.1

Q ss_pred             HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCc---chHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673           30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRF---SDIETLIESHKNDPKITQEPYLCNLIRS  106 (403)
Q Consensus        30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~  106 (403)
                      .+...+.+.|++++|+++|+.+.+.+     +..++..+...+...|+.   ++|...|++....    +...+..|...
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~   78 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELG-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL   78 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT-----CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence            46677788899999999999998876     233445566677777887   8999999988743    34445566664


Q ss_pred             HhccC-----CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC---cHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673          107 YGQAG-----MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD---KVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus       107 ~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      +...+     ++++|+..|++..+.|..   ..+..|...|...+..+   ++.+.+...... +   +...+..+...|
T Consensus        79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y  151 (452)
T 3e4b_A           79 LAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLY  151 (452)
T ss_dssp             HHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHH
T ss_pred             HHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHH
Confidence            54544     788999999999886643   25666666666655433   334444443322 2   233444455555


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCchHHHHHHHhhh----cCC
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQG---NAEEAERLWSEMEKKGVDLDVAAYNVRITNT----YGG  251 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~  251 (403)
                      ...+.++.+......+.+.-...++..+..+...|...|   +.++|+..|++..+.|.......++......    ..+
T Consensus       152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~  231 (452)
T 3e4b_A          152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP  231 (452)
T ss_dssp             HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred             HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence            555533333332222211111112235555555555555   5555555555555554222111122111111    124


Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----Ch
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTC-Y--CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG-----NF  323 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~  323 (403)
                      ++++|...|++.. .|   +...+..|... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++
T Consensus       232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~  303 (452)
T 3e4b_A          232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA  303 (452)
T ss_dssp             CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred             CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence            5555555555554 22   33344444444 2  24555555555555555543   3444444444444 33     55


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 015673          324 DKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKK  370 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~  370 (403)
                      ++|++.|++..    +-++..+..|...|..    ..++++|...|++..+
T Consensus       304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            55555555544    2234444444444444    2255555555555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.67  E-value=1.3e-13  Score=133.20  Aligned_cols=310  Identities=11%  Similarity=0.101  Sum_probs=219.3

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      ...+...+...|.+++|..+|++...       ...+.+.++   ...+++++|.++.+++.      +..+|..+..++
T Consensus      1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A         1052 APDIANIAISNELFEEAFAIFRKFDV-------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQ 1115 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHH
Confidence            34467788889999999999999732       112222232   27788999999988663      366788999999


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  187 (403)
                      ...|++++|++.|.+.      -|...|..++.++.+.|++++|.+.+....+. .  ++....+.++.+|++.+++++.
T Consensus      1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A         1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred             HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHHHH
Confidence            9999999999999664      47788888999999999999999999887653 2  3333344588888888888854


Q ss_pred             HHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673          188 LELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~  266 (403)
                      ..++    +   .++...|..+...|...|++++|...|...         ..|..+...+ +.|+++.|.+.+++..  
T Consensus      1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-- 1248 (1630)
T 1xi4_A         1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-- 1248 (1630)
T ss_pred             HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--
Confidence            4332    2   235567777888999999999999999885         2566777777 8889999999888762  


Q ss_pred             CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673          267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK  346 (403)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (403)
                          +..+|..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++..+... +-....|+
T Consensus      1249 ----n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmft 1318 (1630)
T 1xi4_A         1249 ----STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 1318 (1630)
T ss_pred             ----CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHH
Confidence                5678888888888888888887766542     3456667788888888888888888888777554 44455666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--CCc-----hhHHHHHHHHHHhCCCC
Q 015673          347 LLVEGLVKKKKIKEAKGVIRTIKKK--FPP-----NVLRAWKKVEEELGLVP  391 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-----~~~~~~~~l~~~~~~~~  391 (403)
                      .+...|.+. ++++..+.++-..++  .|+     .....|..+...|...+
T Consensus      1319 ELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A         1319 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred             HHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence            666666653 233333333333332  333     33446666665554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.64  E-value=1.9e-14  Score=128.18  Aligned_cols=272  Identities=14%  Similarity=-0.026  Sum_probs=145.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCCcCcHHHHHHHchhhC---C-CCCchHHHHHH
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSV----ISFNALLFACTRSRLYDKVPILFDEIPKKY---N-LSPDKISYGLL  174 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l  174 (403)
                      +...+...|++++|+..|+++.+.+.. +.    ..+..+...|...|++++|...+++..+..   + .+.....+..+
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            333444444444444444444443211 11    233444444444444444444444433210   0 01122344445


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC----C-CCCchhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc
Q 015673          175 LKSHCDSGSSDKALELLNEMENK----G-VEVTTVTYTTVLNCLYKQGN-----------------AEEAERLWSEMEKK  232 (403)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~  232 (403)
                      ...|...|++++|...++++.+.    + .+....++..+..+|...|+                 +++|...+++..+.
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            55555555555555555544332    0 11122344555555555555                 55555555544331


Q ss_pred             ----CCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC-CC----hhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          233 ----GVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGLK-PD----TISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       233 ----~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                          +..+. ...+..+...+ ..|++++|...+++..+.... ++    ...+..+...|...|++++|...+++..+.
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                11111 11222233333 556666666666655432100 01    236777888888999999999988887643


Q ss_pred             CC-CC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          302 GC-SP----NATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK-----IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       302 ~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      .. ..    ...++..+...+...|++++|...+++.+....     .....++..+..+|...|++++|.+.+++..+.
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            10 01    145677788888999999999999988775411     112457778888999999999999999998875


Q ss_pred             CCch
Q 015673          372 FPPN  375 (403)
Q Consensus       372 ~~~~  375 (403)
                      .+..
T Consensus       373 ~~~~  376 (411)
T 4a1s_A          373 AXXX  376 (411)
T ss_dssp             CCHH
T ss_pred             Hhhc
Confidence            5433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=4.1e-15  Score=132.13  Aligned_cols=316  Identities=11%  Similarity=0.013  Sum_probs=160.6

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc---hhhHHHHHHHHHhcCCcchHHHHHHHhhcC----CC-CCC
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS---RYAQDLTVRRLAKSKRFSDIETLIESHKND----PK-ITQ   96 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~   96 (403)
                      ...+......+...|++++|+..|+.+.+..  |...   ..++..+...+...|++++|...+++....    +. +..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3445566777777788888888888777765  4322   245566677777777777777777765321    11 111


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHH
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISY  171 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  171 (403)
                      ...+..+...+...|++++|+..+++..+.... ++    ..++..+...+...|+...+... ..+.   .. +.. . 
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-~~~~---~~-~~~-a-  159 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP-QDVG---EF-PEE-V-  159 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--------C---CC-CHH-H-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc-chhh---hh-hhh-H-
Confidence            234555666667777777777777666542100 01    22445555555555550000000 0000   00 000 0 


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----hHHH
Q 015673          172 GLLLKSHCDSGSSDKALELLNEMENK----GV-EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD-LD----VAAY  241 (403)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~  241 (403)
                               ...+++|.+.+++..+.    +. +....++..+..+|...|++++|...+++..+.... ++    ...+
T Consensus       160 ---------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  230 (406)
T 3sf4_A          160 ---------RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY  230 (406)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence                     00044444444333221    00 011233444555555555555555555554432100 01    1122


Q ss_pred             HHHHhhh-cCCChHHHHHHHHHHHHC----CCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHH
Q 015673          242 NVRITNT-YGGDPERLKELIDEMRDA----GLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPN----ATTF  310 (403)
Q Consensus       242 ~~ll~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~  310 (403)
                      ..+...+ ..|++++|...+++..+.    +..+ ...++..+...|...|++++|...+++..+... .++    ..++
T Consensus       231 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  310 (406)
T 3sf4_A          231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC  310 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            2222233 555555555555554322    1000 134566777778888888888888877654210 111    4466


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMV----HK-IPDFNTVKLLVEGLVKKKKI  358 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~  358 (403)
                      ..+...+...|++++|...+++..+.    +. .....++..+...+...|+.
T Consensus       311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            77777888888888888888876653    11 12234566667777777665

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=3e-14  Score=126.53  Aligned_cols=291  Identities=12%  Similarity=-0.025  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhh---CCCCC-chH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS----VISFNALLFACTRSRLYDKVPILFDEIPKK---YNLSP-DKI  169 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~  169 (403)
                      ..+......+...|++++|+..|+++.+.+.. +    ...+..+...+...|++++|...+++....   .+..| ...
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34455666667777777777777777665422 2    245666666777777777777777665432   11111 245


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCchhhHHHHHHHHHhcCC--------------------HHHHHH
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGV-----EVTTVTYTTVLNCLYKQGN--------------------AEEAER  224 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~--------------------~~~a~~  224 (403)
                      ++..+...+...|++++|...+++..+...     .....++..+...|...|+                    +++|..
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            677778888888888888888887754310     1113477888888999999                    999999


Q ss_pred             HHHHHHHc----CCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-CCC----hhcHHHHHHHHHhcCChHHHHH
Q 015673          225 LWSEMEKK----GVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGL-KPD----TISYNFLMTCYCKNEMMDEAKK  293 (403)
Q Consensus       225 ~~~~~~~~----~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~  293 (403)
                      .+.+..+.    +..+. ...+..+...+ ..|++++|...+++..+... .++    ..++..+...|...|++++|..
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            88876543    11122 22344444445 88999999999998865311 112    2378888999999999999999


Q ss_pred             HHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHH
Q 015673          294 VYEGLEENGC-SPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKI-P----DFNTVKLLVEGLVKKKKIKEAKG  363 (403)
Q Consensus       294 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~  363 (403)
                      .+++..+... .++    ..++..+...+...|++++|...+++..+.... .    ...++..+..+|...|++++|.+
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9998764310 112    457788889999999999999999998764211 1    15677889999999999999999


Q ss_pred             HHHHHHHh---C--CchhHHHHHHHHHHhCC
Q 015673          364 VIRTIKKK---F--PPNVLRAWKKVEEELGL  389 (403)
Q Consensus       364 ~~~~~~~~---~--~~~~~~~~~~l~~~~~~  389 (403)
                      .+++..+.   .  ++.....+..+...+..
T Consensus       329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  359 (406)
T 3sf4_A          329 FAEKHLEISREVGDKSGELTARLNLSDLQMV  359 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence            99998652   2  33344455555555433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=3.5e-15  Score=132.95  Aligned_cols=279  Identities=12%  Similarity=0.011  Sum_probs=152.3

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc---hhhHHHHHHHHHhcCCcchHHHHHHHhhcC----C-CCCCHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS---RYAQDLTVRRLAKSKRFSDIETLIESHKND----P-KITQEP   98 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~   98 (403)
                      .+..+...+...|++++|+..|+++.+..  |...   ..++..+...+...|++++|...+++....    + .+....
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34456667777788888888888777765  4322   135666777777777777777777766431    1 112223


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHhcCC-----------------cCcHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELG-----TPRSVISFNALLFACTRSRL-----------------YDKVPILFD  156 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~  156 (403)
                      .+..+...|...|++++|+..|+++.+..     .+....++..+...|...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            45667777777777777777777665421     01123345555566666666                 555555555


Q ss_pred             HchhhC---CC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673          157 EIPKKY---NL-SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-VT----TVTYTTVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       157 ~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~  227 (403)
                      +..+..   +. +....++..+...+...|++++|.+.+++..+.... .+    ...+..+..+|...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            443210   00 011224444555555555555555555554332100 00    1134444445555555555555554


Q ss_pred             HHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 015673          228 EMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGL-KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----G  302 (403)
Q Consensus       228 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~  302 (403)
                      +......                              ..+. .....++..+...|...|++++|...+++..+.    +
T Consensus       288 ~al~~~~------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          288 RTLALAV------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             HHHHHHH------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            4433200                              0000 001345666777777777777777777776532    1


Q ss_pred             C-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          303 C-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       303 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      . .....++..+...+...|++++|...+++..+..
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            0 0113366667777788888888888888777643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.61  E-value=1.2e-12  Score=111.54  Aligned_cols=231  Identities=8%  Similarity=0.024  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcc----CCH----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-------cCCc-------CcHHHHH
Q 015673           98 PYLCNLIRSYGQA----GMF----DHAMRTFDQMDELGTPRSVISFNALLFACTR-------SRLY-------DKVPILF  155 (403)
Q Consensus        98 ~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~  155 (403)
                      ..|...+....+.    ++.    ++|..+|+++....+ -+...|..++..+..       .|++       ++|..+|
T Consensus         9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~   87 (308)
T 2ond_A            9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY   87 (308)
T ss_dssp             HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence            3455555554332    232    566677777766443 256666666666543       3554       5666666


Q ss_pred             HHchhhCCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          156 DEIPKKYNLSP-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT-TV-TYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       156 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ++..+  .+.| +...|..++..+.+.|++++|.++|+++.+.  .|+ .. .|..++..+.+.|++++|..+|++..+.
T Consensus        88 ~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A           88 ERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            66654  1233 3345666666666666666666666666653  222 22 5666666666666666666666666554


Q ss_pred             CCCCchHHHHHHHhh-h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CH
Q 015673          233 GVDLDVAAYNVRITN-T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG-CSP--NA  307 (403)
Q Consensus       233 ~~~~~~~~~~~ll~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~  307 (403)
                      .. ++...|...... + ..|+++.|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++|  ..
T Consensus       164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            21 111112111111 0 1344444444444444331 1133344444444444444444444444444431 122  23


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          308 TTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      ..|..++......|+.++|..+++++.+
T Consensus       242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          242 EIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444444444444444444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.60  E-value=4.8e-13  Score=114.08  Aligned_cols=218  Identities=7%  Similarity=0.005  Sum_probs=127.1

Q ss_pred             HHHHHHHHHhhhccCCCCcchhhHHHHHHHHH-------hcCCc-------chHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLA-------KSKRF-------SDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        42 ~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      ++|+.+|++++...  |. +...|..++..+.       ..|++       ++|..+|++......+.+...|..++..+
T Consensus        33 ~~a~~~~~~al~~~--p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH--TT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            67788888888877  43 4555666666554       34665       67777777776433445555677777777


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH-hcCChH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVI-SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC-DSGSSD  185 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~  185 (403)
                      .+.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+.  .+++...|...+.... ..|+++
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence            7777777777777777764321 232 6666666666677777777777776542  2233333433322221 246666


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc--hHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLD--VAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      +|.++|++..+. .+.+...|..++..+.+.|++++|..+|++..... ..|+  ...|...+... ..|+.+.|..+++
T Consensus       187 ~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666666554 22345566666666666666666666666666542 2321  23333333333 4455555555555


Q ss_pred             HHHHC
Q 015673          262 EMRDA  266 (403)
Q Consensus       262 ~~~~~  266 (403)
                      ++.+.
T Consensus       266 ~a~~~  270 (308)
T 2ond_A          266 RRFTA  270 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.60  E-value=4.1e-13  Score=120.67  Aligned_cols=323  Identities=17%  Similarity=0.071  Sum_probs=201.5

Q ss_pred             chhHHHHHhhhhccCCh---HHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcC-----CcchHHHHHHHhhcCCCCCC
Q 015673           25 SISVSKAKSKLRSEFDP---DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK-----RFSDIETLIESHKNDPKITQ   96 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~---~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~   96 (403)
                      +..+..+...+...|++   ++|++.|++..+..  |    .++..+...+...+     ++++|...|++....+.+. 
T Consensus        35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~--~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~-  107 (452)
T 3e4b_A           35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS--P----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN-  107 (452)
T ss_dssp             CTGGGTCC----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS-
T ss_pred             HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC--H----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH-
Confidence            34555666677777888   89999999998652  3    34456666555554     6788999999988644433 


Q ss_pred             HHHHHHHHHHHhccCCHH---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHH
Q 015673           97 EPYLCNLIRSYGQAGMFD---HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGL  173 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  173 (403)
                        .+..|...|...+..+   ++.+.+......|   +...+..|...|...+.++++......+.+. -...+...+..
T Consensus       108 --A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~-a~~~~~~a~~~  181 (452)
T 3e4b_A          108 --TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKA-ALNTTDICYVE  181 (452)
T ss_dssp             --CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH-HTTTCTTHHHH
T ss_pred             --HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH-HHcCCHHHHHH
Confidence              4566777777665443   3455555555443   4566777778888888776665553333222 12223447888


Q ss_pred             HHHHHHhcC---ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 015673          174 LLKSHCDSG---SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ----GNAEEAERLWSEMEKKGVDLDVAAYNVRIT  246 (403)
Q Consensus       174 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  246 (403)
                      +...|...|   ++++|++.|++..+.|. ++...+..+...|...    +++++|+..|++.. .|.  ....++....
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~--~~a~~~Lg~~  257 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY--PASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS--THHHHHHHHH
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC--HHHHHHHHHH
Confidence            888888899   88999999999988864 3555556677777554    68999999999987 432  1222222221


Q ss_pred             ---hhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015673          247 ---NTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE-----MMDEAKKVYEGLEENGCSPNATTFRTWIYHLC  318 (403)
Q Consensus       247 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (403)
                         ....+++++|...|++..+.|   +...+..|...|. .|     ++++|...|++.. .|   +...+..+...|.
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYR  329 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHH
Confidence               126789999999999998876   6667777887777 45     8999999999887 43   6667777777776


Q ss_pred             c----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCch
Q 015673          319 G----SGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       319 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .    ..+.++|..+|++..+.|.   +.....|...|..    ..++++|...++...+...++
T Consensus       330 ~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          330 RGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE  391 (452)
T ss_dssp             TTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence            6    3489999999999888763   3344556666654    457888888888876654444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.60  E-value=4e-14  Score=122.12  Aligned_cols=123  Identities=10%  Similarity=-0.041  Sum_probs=86.2

Q ss_pred             cCCChHHHHHHHHHHHHCCC-CC----ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGL-KP----DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGC-SPN----ATTFRTWIYHLC  318 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~  318 (403)
                      ..|++++|...+++..+... .+    ...++..+...+...|++++|...+++..+... ..+    ..++..+...+.
T Consensus       195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            55666666666665543210 00    123677788888899999999999988764210 112    456777888899


Q ss_pred             ccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          319 GSGNFDKAYKVFKESVMVHK-----IPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      ..|++++|...++++.+...     .....++..+...|.+.|++++|...+++..+.
T Consensus       275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999988765421     112446778889999999999999999998763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.59  E-value=1.1e-13  Score=121.91  Aligned_cols=302  Identities=8%  Similarity=-0.020  Sum_probs=168.9

Q ss_pred             hhccCChHHHHHHHHHhhhccCC--CCcchhhHHHHHH--HHHhcCCcchHH-----------HHHHHhhcCCCCCCHHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYAS--PVSSRYAQDLTVR--RLAKSKRFSDIE-----------TLIESHKNDPKITQEPY   99 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~~~l~~--~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~   99 (403)
                      ..+.+++++|..+++.+.+.-..  ...+...|..++.  ...-.+.++.+.           +.++.+.....  +...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cchh
Confidence            34688999999999998664411  1222222222221  111223333333           55555542111  1111


Q ss_pred             H------HHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-
Q 015673          100 L------CNLIRSYGQAGMFDHAMRTFDQMDEL----GTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-  167 (403)
Q Consensus       100 ~------~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  167 (403)
                      +      ......+...|++++|+..|++..+.    +-.+ ...++..+...|...|++++|...+++..+...-.++ 
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence            1      22555666778888888888777653    1111 2345666667777777777777777666543211111 


Q ss_pred             ----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 015673          168 ----KISYGLLLKSHCDSGSSDKALELLNEMENKGV-----EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV  238 (403)
Q Consensus       168 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  238 (403)
                          ..+++.+..+|...|++++|.+.+++..+...     .....++..+..+|...|++++|...+++..+.      
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~------  253 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV------  253 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence                24566666667777777777776666543210     001135555666666666666666666655441      


Q ss_pred             HHHHHHHhhhcCCChHHHHHHHHHHHHCCC-CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 015673          239 AAYNVRITNTYGGDPERLKELIDEMRDAGL-KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----GCSPNATTFRTW  313 (403)
Q Consensus       239 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l  313 (403)
                                           .   ...+. +....++..+...|.+.|++++|...+++..+.    +-+.....+..+
T Consensus       254 ---------------------~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  309 (383)
T 3ulq_A          254 ---------------------F---EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL  309 (383)
T ss_dssp             ---------------------H---HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ---------------------H---HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                                 0   01111 112445666777777777777777777776532    111112234556


Q ss_pred             HHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          314 IYHLCGSGN---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       314 ~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ...+...|+   +++|+.++++..  ..+.....+..+...|...|++++|...+++..+
T Consensus       310 ~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          310 KSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            667777777   677777776651  2123345666778888888888888888888764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=2.7e-14  Score=123.18  Aligned_cols=277  Identities=12%  Similarity=0.007  Sum_probs=149.3

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc---hhhHHHHHHHHHhcCCcchHHHHHHHhhcC----C-CCCCH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS---RYAQDLTVRRLAKSKRFSDIETLIESHKND----P-KITQE   97 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~   97 (403)
                      ..+......+...|++++|+..|+++.+..  |...   ...+..+...+...|++++|.+.+++....    + .+...
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            345555667777777777777777777765  4322   245556667777777777777777765421    1 11112


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHhcCC--------------------cCcHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALLFACTRSRL--------------------YDKVP  152 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~  152 (403)
                      ..+..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            34455666666667777777666665442100 11    2244455555555555                    44444


Q ss_pred             HHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          153 ILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKG-VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      ..+++.....                                ...+ .+....++..+...+...|++++|...+++..+
T Consensus       164 ~~~~~a~~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  211 (338)
T 3ro2_A          164 DLYEENLSLV--------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL  211 (338)
T ss_dssp             HHHHHHHHHH--------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4444332110                                0000 001123444445555555555555555555433


Q ss_pred             cCCC-Cc----hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC-CCC----hhcHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015673          232 KGVD-LD----VAAYNVRITNT-YGGDPERLKELIDEMRDAGL-KPD----TISYNFLMTCYCKNEMMDEAKKVYEGLEE  300 (403)
Q Consensus       232 ~~~~-~~----~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  300 (403)
                      .... ++    ...+..+...+ ..|++++|...+++..+... ..+    ..++..+...|...|++++|...+++..+
T Consensus       212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            2100 00    11222222233 55556666555555443210 001    34567777888888899888888887764


Q ss_pred             C----CCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 015673          301 N----GCS-PNATTFRTWIYHLCGSGNFDKAYKVFKESVMV  336 (403)
Q Consensus       301 ~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (403)
                      .    +.. ....++..+...+...|++++|...+++..+.
T Consensus       292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            2    101 11346677888888899999999999888764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=5.1e-13  Score=104.68  Aligned_cols=163  Identities=12%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 015673          204 VTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCY  282 (403)
Q Consensus       204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  282 (403)
                      .+|..+..+|...|++++|+..|++..+... .+...+..+...+ ..|++++|...+....... +.+...+..+...+
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN   83 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence            3444444444444444444444444444321 1222222222222 4444444444444444432 22344455555666


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673          283 CKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK  362 (403)
Q Consensus       283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  362 (403)
                      ...++++.|...+.+..+.. +.+...+..+...+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|.
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence            66677777777777666553 3455666667777777777777777777776655 556667777777777777777777


Q ss_pred             HHHHHHHH
Q 015673          363 GVIRTIKK  370 (403)
Q Consensus       363 ~~~~~~~~  370 (403)
                      +.|++..+
T Consensus       162 ~~~~~al~  169 (184)
T 3vtx_A          162 KYFKKALE  169 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77777766

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.57  E-value=5.4e-13  Score=120.68  Aligned_cols=213  Identities=10%  Similarity=-0.017  Sum_probs=177.0

Q ss_pred             cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673          148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSS-DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      +++++..++....  ..+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus        84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4456666666543  3344778889999999999999 99999999998863 346788999999999999999999999


Q ss_pred             HHHHHcCCCCchHHHHHHHhhh-cC---------CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhc--------CCh
Q 015673          227 SEMEKKGVDLDVAAYNVRITNT-YG---------GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKN--------EMM  288 (403)
Q Consensus       227 ~~~~~~~~~~~~~~~~~ll~~~-~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  288 (403)
                      ++..+..  |+...+..+-..+ ..         |++++|...+++..+.. +.+...|..+..+|...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            9999874  5556666666666 77         99999999999998874 33677888999999988        999


Q ss_pred             HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015673          289 DEAKKVYEGLEENGCS---PNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       289 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      ++|...|++..+.. +   .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999863 3   478899999999999999999999999998876 567788899999999999999998766


Q ss_pred             HHH
Q 015673          366 RTI  368 (403)
Q Consensus       366 ~~~  368 (403)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=3.5e-13  Score=105.62  Aligned_cols=165  Identities=14%  Similarity=0.018  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                      ..|..+...+...|++++|++.|++... ..|.+...+..+..++.+.|++++|+..+......... +...+..+...+
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLK-ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN   83 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence            3344445555555555555555555442 22333444444555555555555555555554443322 344444444445


Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      ...++++.+...+.+..+.  .+.+...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus        84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            5555555555555554432  22234445555555555555555555555555542 23445555555555555555555


Q ss_pred             HHHHHHHHHc
Q 015673          223 ERLWSEMEKK  232 (403)
Q Consensus       223 ~~~~~~~~~~  232 (403)
                      ++.|++..+.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            5555555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.56  E-value=1.5e-13  Score=117.19  Aligned_cols=251  Identities=12%  Similarity=0.095  Sum_probs=169.6

Q ss_pred             CCCCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhcc-----CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673           15 TAAGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHY-----ASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHK   89 (403)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   89 (403)
                      ...+...+.....+..+...+...|++++|+.+|+++.+..     ..+.....++..+...+...|++++|...+++..
T Consensus        17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34444455566778889999999999999999999998741     0123356677889999999999999999999886


Q ss_pred             cC------C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCcHHHHHHHHHHHHhcCCcCcHHHHH
Q 015673           90 ND------P-KITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL------GT-PRSVISFNALLFACTRSRLYDKVPILF  155 (403)
Q Consensus        90 ~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~  155 (403)
                      ..      . .+.....+..+...+...|++++|...|+++.+.      +. +.....+..+...+...|++++|..++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A           97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            43      1 2333456788999999999999999999998764      21 224566888889999999999999999


Q ss_pred             HHchhhC------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCchh-------hHHHHHHHHHh
Q 015673          156 DEIPKKY------NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK-------GVEVTTV-------TYTTVLNCLYK  215 (403)
Q Consensus       156 ~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~ll~~~~~  215 (403)
                      +++.+..      ..+....++..+..+|...|++++|.+.++++.+.       ...+...       .+..+...+..
T Consensus       177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            9987531      12223457888999999999999999999998753       1111111       12222233334


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673          216 QGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~  266 (403)
                      .+.+.++...+....... +.....+..+...+ ..|++++|...+++..+.
T Consensus       257 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             -CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            445555666666655431 22344455555556 889999999999887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.56  E-value=4.5e-13  Score=118.11  Aligned_cols=117  Identities=8%  Similarity=-0.000  Sum_probs=85.3

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC----CCCCHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEEN----GC-SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH----KIPDFN  343 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~  343 (403)
                      .++..+..+|...|++++|...+++..+.    +. +....++..+...+...|++++|...+++..+..    .+....
T Consensus       225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  304 (383)
T 3ulq_A          225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS  304 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46778999999999999999999998762    32 3345678889999999999999999999987642    122233


Q ss_pred             HHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          344 TVKLLVEGLVKKKK---IKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       344 ~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      .+..+...+...|+   +++|..++++.  ...|+....+..+...+...+
T Consensus       305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g  353 (383)
T 3ulq_A          305 EFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERK  353 (383)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCC
Confidence            45678888889999   77777777766  244454555555555554444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.54  E-value=4.8e-14  Score=120.34  Aligned_cols=53  Identities=13%  Similarity=0.020  Sum_probs=22.4

Q ss_pred             HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          317 LCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +...+.+.++...++...... +....++..+..+|.+.|++++|.+.+++..+
T Consensus       254 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          254 QKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334444555555555544322 23345555566666666666666666666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.53  E-value=1.5e-12  Score=114.51  Aligned_cols=316  Identities=11%  Similarity=-0.050  Sum_probs=170.8

Q ss_pred             ccchhHHHHHhhh--hccCChHHHHHHHHHhhhcc--CCCCcchhhHHHHHHH--HHhcCCcchHH---------HHHHH
Q 015673           23 ASSISVSKAKSKL--RSEFDPDKALDIYSSVSKHY--ASPVSSRYAQDLTVRR--LAKSKRFSDIE---------TLIES   87 (403)
Q Consensus        23 ~~~~~~~~l~~~l--~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~   87 (403)
                      |+...-..+-..+  ...+++++|..+++++.+..  .........|..++..  ..-.+.+..+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            3344444444455  67889999999998875533  1111122222222221  11123333333         55555


Q ss_pred             hhcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C----cHHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673           88 HKNDPKITQEP----YLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-R----SVISFNALLFACTRSRLYDKVPILFDEI  158 (403)
Q Consensus        88 ~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~  158 (403)
                      +.....+.+..    .+......+...|++++|+..|++..+.... +    ...++..+...|...|+++.|...+++.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            53211111110    1223445556777777777777776543110 1    2345566666677777777777766665


Q ss_pred             hhhCCCCC-----chHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          159 PKKYNLSP-----DKISYGLLLKSHCDSGSSDKALELLNEMENK----GVE-VTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       159 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      .+...-.+     ...+++.+..+|...|++++|.+.|++..+.    +.+ ....++..+..+|...|++++|...+++
T Consensus       168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            54211111     1345566666667777777777766665442    111 1123455566666666666666666665


Q ss_pred             HHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC
Q 015673          229 MEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENG----CS  304 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~  304 (403)
                      ..+.                           ++..  . .+....++..+...|.+.|++++|...+++..+..    -+
T Consensus       248 al~~---------------------------~~~~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  297 (378)
T 3q15_A          248 AAKV---------------------------SREK--V-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK  297 (378)
T ss_dssp             HHHH---------------------------HHHH--C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred             HHHH---------------------------HHhh--C-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            5441                           0000  1 12224556667777778888888888887766431    11


Q ss_pred             CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          305 PNATTFRTWIYHLCGSGN---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .....+..+...+...++   +.+|+..+++..  ..+.....+..+...|...|++++|...+++..+
T Consensus       298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          298 FYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            123345555556666677   677777776521  2123345566778888888888888888887754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=4.6e-13  Score=121.12  Aligned_cols=214  Identities=9%  Similarity=-0.073  Sum_probs=126.8

Q ss_pred             cchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHH
Q 015673           78 FSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMF-DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFD  156 (403)
Q Consensus        78 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  156 (403)
                      ++++...++... ...+.+...+..+...+...|++ ++|++.|++..+.... +..+|..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            445555665554 23345566666777777777777 7777777777665532 46677777777777777777777777


Q ss_pred             HchhhCCCCCchHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc--------CCH
Q 015673          157 EIPKKYNLSPDKISYGLLLKSHCDS---------GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ--------GNA  219 (403)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~  219 (403)
                      +..+   ..|+...+..+...+...         |++++|.+.|++..+.. +.+...|..+..+|...        |++
T Consensus       162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            7763   345566677777777777         77777777777776652 33556666666666666        556


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          220 EEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLE  299 (403)
Q Consensus       220 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  299 (403)
                      ++|+..|++..+..  |.                              ...+...|..+..+|...|++++|...|++..
T Consensus       238 ~~A~~~~~~al~~~--p~------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          238 QQALSAYAQAEKVD--RK------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHHHHHHHHHHHHC--GG------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CC------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666555542  20                              00134445555555555555555555555554


Q ss_pred             HCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015673          300 ENGCSPNATTFRTWIYHLCGSGNFDKAYKVF  330 (403)
Q Consensus       300 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  330 (403)
                      +.. +.+...+..+..++...|++++|++.+
T Consensus       286 ~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          286 ALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            442 223444445555555555555555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.50  E-value=1.2e-11  Score=108.60  Aligned_cols=299  Identities=10%  Similarity=0.020  Sum_probs=168.9

Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHH
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEP----YLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALL  139 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll  139 (403)
                      ...+...|++++|...+++........+..    .+..+...+...|++++|...+++....... .+    ..++..+.
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344445566666666665554322212111    2344555566666666666666665432100 11    12244555


Q ss_pred             HHHHhcCCcCcHHHHHHHchhhC---CCC--C-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CchhhHHHH
Q 015673          140 FACTRSRLYDKVPILFDEIPKKY---NLS--P-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVE----VTTVTYTTV  209 (403)
Q Consensus       140 ~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l  209 (403)
                      ..+...|++++|...+++..+..   +.+  | ....+..+...+...|++++|...+++.......    .....+..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            56666777777777666654321   111  2 2344556667777778888888777776543211    122456667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHH----HHHhhh-cCCChHHHHHHHHHHHHCCCCCC---hhcHHHHH
Q 015673          210 LNCLYKQGNAEEAERLWSEMEKKGVDLD--VAAYN----VRITNT-YGGDPERLKELIDEMRDAGLKPD---TISYNFLM  279 (403)
Q Consensus       210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~  279 (403)
                      ...+...|++++|...+++.......++  .....    .....+ ..|++++|...++........+.   ...+..+.
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la  260 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  260 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence            7777788888888888877765321111  11111    111223 77888888888877654321111   12356677


Q ss_pred             HHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673          280 TCYCKNEMMDEAKKVYEGLEEN----GCSPNA-TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK  354 (403)
Q Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (403)
                      ..+...|++++|...++.....    |..++. ..+..+..++...|+.++|...+++.....-+      .-.+..+..
T Consensus       261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~~~~~  334 (373)
T 1hz4_A          261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFISHFVI  334 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHHHHHH
Confidence            7888889999999988887532    211222 25556677888899999999988887653200      012233444


Q ss_pred             cCCHHHHHHHHHHHHHhCCch
Q 015673          355 KKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .|  +....+++.+.+..+.+
T Consensus       335 ~g--~~~~~ll~~~~~~~~~~  353 (373)
T 1hz4_A          335 EG--EAMAQQLRQLIQLNTLP  353 (373)
T ss_dssp             TH--HHHHHHHHHHHHTTCSC
T ss_pred             cc--HHHHHHHHHHHhCCCCc
Confidence            44  56666777776644443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.49  E-value=2.3e-11  Score=106.70  Aligned_cols=270  Identities=12%  Similarity=-0.016  Sum_probs=191.8

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc----hHHHH
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVI----SFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD----KISYG  172 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~  172 (403)
                      ......+...|++++|...+++........+..    +++.+...+...|++++|...+++......-..+    ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            345566778999999999999987754332322    4666777888999999999999987653111112    23466


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----chHHH
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENK----GVE--V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL----DVAAY  241 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~  241 (403)
                      .+...+...|++++|...+++..+.    +..  | ....+..+..++...|++++|...+++........    ....+
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            7888899999999999999987653    221  2 33456778889999999999999999987653221    12334


Q ss_pred             HHHHhhh-cCCChHHHHHHHHHHHHCCCCCCh-hcHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHH
Q 015673          242 NVRITNT-YGGDPERLKELIDEMRDAGLKPDT-ISYN-----FLMTCYCKNEMMDEAKKVYEGLEENGCSP---NATTFR  311 (403)
Q Consensus       242 ~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~  311 (403)
                      ..+...+ ..|++++|...+++.......++. ..+.     ..+..+...|++++|...++........+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            4444444 889999999999998754212221 1122     23344779999999999999987543211   133566


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          312 TWIYHLCGSGNFDKAYKVFKESVMV----HKIPDF-NTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+...+...|++++|...+++....    +..++. .++..+..++...|++++|...+++...
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            7788899999999999999887653    212222 3667778889999999999999998865

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.47  E-value=1.3e-11  Score=108.42  Aligned_cols=215  Identities=9%  Similarity=-0.020  Sum_probs=129.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCC--C---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CC-chHHHH
Q 015673          174 LLKSHCDSGSSDKALELLNEMENKGV--E---VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV-----DL-DVAAYN  242 (403)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~  242 (403)
                      ....+...|++++|...|+++.+...  +   ....++..+..+|...|+++.|...+.+..+...     .+ ...+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34445555666666666665543210  0   1123455555566666666666666555543210     00 112233


Q ss_pred             HHHhhh-cCCChHHHHHHHHHHHHC----CCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 015673          243 VRITNT-YGGDPERLKELIDEMRDA----GLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEE-----NGCSPNATTFR  311 (403)
Q Consensus       243 ~ll~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~  311 (403)
                      .+-..+ ..|++++|...+++..+.    +..+ ...++..+..+|...|++++|...+++..+     .. +....++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence            333333 566666666666555432    1111 234677889999999999999999999876     43 33367888


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCchhHHHHHHHH
Q 015673          312 TWIYHLCGSGNFDKAYKVFKESVMVH----KIPDFNTVKLLVEGLVKKKK---IKEAKGVIRTIKKKFPPNVLRAWKKVE  384 (403)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~  384 (403)
                      .+...+.+.|++++|...+++..+..    .+.....+..+...+...|+   +++|...+++.  ...|+....+..+.
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~~~la  343 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACARSAA  343 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHHHHHH
Confidence            89999999999999999999988752    12234456666677777888   77777777763  23445445555565


Q ss_pred             HHhCCCC
Q 015673          385 EELGLVP  391 (403)
Q Consensus       385 ~~~~~~~  391 (403)
                      ..+...+
T Consensus       344 ~~y~~~g  350 (378)
T 3q15_A          344 AVFESSC  350 (378)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCC
Confidence            5554444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=6e-12  Score=98.39  Aligned_cols=166  Identities=14%  Similarity=0.035  Sum_probs=112.0

Q ss_pred             hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015673           62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA  141 (403)
Q Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~  141 (403)
                      ...+..++..+...|++++|...++++.. ..+.+...+..+...+...|++++|...++.+.+... .+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD-ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCC-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            34455566666677777777777777653 3334555666677777777777777777777766543 256666677777


Q ss_pred             HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673          142 CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       142 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  221 (403)
                      +...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            77777777777777777653  33455667777777777777777777777776652 3456677777777777777777


Q ss_pred             HHHHHHHHHHc
Q 015673          222 AERLWSEMEKK  232 (403)
Q Consensus       222 a~~~~~~~~~~  232 (403)
                      |...++++.+.
T Consensus       163 A~~~~~~~~~~  173 (186)
T 3as5_A          163 ALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            77777776654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.46  E-value=5.7e-10  Score=103.94  Aligned_cols=360  Identities=9%  Similarity=0.034  Sum_probs=215.6

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC---cchHHHHHHHhhcCC-CCCCHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR---FSDIETLIESHKNDP-KITQEP   98 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~   98 (403)
                      -+...|..++..+.+.+.++.+..+|+++...-  |. ....|...+..-.+.++   ++.+..+|++..... .+++..
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence            355578888999988999999999999999988  54 44567777777788888   999999999998533 137777


Q ss_pred             HHHHHHHHHhccCCH--------HHHHHHHHHHHh-CCC-CC-cHHHHHHHHHHHHh---------cCCcCcHHHHHHHc
Q 015673           99 YLCNLIRSYGQAGMF--------DHAMRTFDQMDE-LGT-PR-SVISFNALLFACTR---------SRLYDKVPILFDEI  158 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~  158 (403)
                      .|...+....+.++.        +...++|+.... .|. .+ +...|...+.....         .++++.+..+|+..
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra  220 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL  220 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence            888777665555443        334577777654 354 34 34677777665432         23345566666666


Q ss_pred             hhhCCCCCc--hHHHH---HH-----------------------------------------------------------
Q 015673          159 PKKYNLSPD--KISYG---LL-----------------------------------------------------------  174 (403)
Q Consensus       159 ~~~~~~~~~--~~~~~---~l-----------------------------------------------------------  174 (403)
                      +.   +|..  ..+|.   .+                                                           
T Consensus       221 L~---iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~  297 (679)
T 4e6h_A          221 LC---QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY  297 (679)
T ss_dssp             TT---SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred             Hh---CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence            53   2111  11111   11                                                           


Q ss_pred             -----------HHHHHhcC-------ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCC
Q 015673          175 -----------LKSHCDSG-------SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAE-RLWSEMEKKGVD  235 (403)
Q Consensus       175 -----------~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~  235 (403)
                                 +..--..+       ..+.+..+|+++... .+-+...|...+..+...|+.++|. ++|++.... ++
T Consensus       298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P  375 (679)
T 4e6h_A          298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP  375 (679)
T ss_dssp             CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred             HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence                       00000000       001122333333333 2234445555555566677777776 888887764 22


Q ss_pred             CchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC---------CCC------------hhcHHHHHHHHHhcCChHHHHH
Q 015673          236 LDVAAYNVRITNT-YGGDPERLKELIDEMRDAGL---------KPD------------TISYNFLMTCYCKNEMMDEAKK  293 (403)
Q Consensus       236 ~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~A~~  293 (403)
                      .+...+-..+... ..|+++.|.++|+.+.....         .|+            ...|...+....+.|+.+.|..
T Consensus       376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~  455 (679)
T 4e6h_A          376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK  455 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence            2333333344444 77888888888887765310         121            2356666666677788888888


Q ss_pred             HHHHHHHC-CCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          294 VYEGLEEN-GCSPNATTFRTWIYHLCGS-GNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       294 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      +|....+. + ......|...+..-.+. ++.+.|.++|+..++. .+.+...+..+++.....|+.+.|..+|++..+.
T Consensus       456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            88888765 2 12233443333333333 4478888888888775 3556666777777777788888888888888776


Q ss_pred             CCc--hhHHHHHHHHHHhCCCCC
Q 015673          372 FPP--NVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       372 ~~~--~~~~~~~~l~~~~~~~~~  392 (403)
                      .++  .....|...++--..+|+
T Consensus       534 ~~~~~~~~~lw~~~~~fE~~~G~  556 (679)
T 4e6h_A          534 ISDSHLLKMIFQKVIFFESKVGS  556 (679)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCC
Confidence            553  344566665554444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=2.2e-11  Score=98.83  Aligned_cols=207  Identities=12%  Similarity=0.028  Sum_probs=152.2

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673          166 PDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI  245 (403)
Q Consensus       166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  245 (403)
                      .|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.... +...+..+-
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4567888899999999999999999999988754367788888999999999999999999999986422 334444455


Q ss_pred             hhh-cCCChHHHHHHHHHHHHCCCCCCh-------hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 015673          246 TNT-YGGDPERLKELIDEMRDAGLKPDT-------ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN---ATTFRTWI  314 (403)
Q Consensus       246 ~~~-~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~  314 (403)
                      ..+ ..|++++|...+++..+.. +.+.       ..|..+...+...|++++|...|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            555 8899999999999998863 2234       45777888888999999999999999876  454   45677777


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      .++...|     ..+++++...+ ..+...|....  ....+.+++|...+++..+..| +....+..+..
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~  222 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQ  222 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence            7775544     44556665554 34455554433  3446678999999999988544 44445554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=2.4e-12  Score=121.15  Aligned_cols=167  Identities=10%  Similarity=0.002  Sum_probs=147.6

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      .+...++.+...+.+.|++++|++.|+++++..  |. ...+|..+..+|.+.|++++|+..|++..+ ..+.....|..
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~P~~~~a~~n   82 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Confidence            346789999999999999999999999999998  54 667888999999999999999999999885 45566788999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      +..++.+.|++++|++.|++..+.... +..+|+.+..+|.+.|++++|+..|++..+.  .+-+...+..+..++...|
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence            999999999999999999999987654 6889999999999999999999999999864  2345778999999999999


Q ss_pred             ChHHHHHHHHHHHh
Q 015673          183 SSDKALELLNEMEN  196 (403)
Q Consensus       183 ~~~~a~~~~~~~~~  196 (403)
                      ++++|.+.++++.+
T Consensus       160 ~~~~A~~~~~kal~  173 (723)
T 4gyw_A          160 DWTDYDERMKKLVS  173 (723)
T ss_dssp             CCTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999988754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=1.5e-11  Score=96.00  Aligned_cols=120  Identities=16%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus        54 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           54 KTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            4444444444444444432 2245566667777778888888888888877654 4566777778888888888888888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      .++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus       132 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          132 SFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            888887765 556778888888888888888888888888764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.40  E-value=7.5e-12  Score=117.85  Aligned_cols=166  Identities=9%  Similarity=0.005  Sum_probs=146.9

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF  140 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  140 (403)
                      ...+|+.+...+.+.|++++|+..|++..+ ..+.+...+..+..+|.+.|++++|+..|++..+.... +..+|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            567889999999999999999999999985 45566788999999999999999999999999987654 6889999999


Q ss_pred             HHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHH
Q 015673          141 ACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE  220 (403)
Q Consensus       141 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  220 (403)
                      ++.+.|++++|++.|++.++.  -+-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence            999999999999999999864  23467889999999999999999999999999863 346788999999999999999


Q ss_pred             HHHHHHHHHHH
Q 015673          221 EAERLWSEMEK  231 (403)
Q Consensus       221 ~a~~~~~~~~~  231 (403)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998888765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=1.8e-11  Score=99.33  Aligned_cols=206  Identities=7%  Similarity=-0.028  Sum_probs=155.8

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      .++..+......+...|++++|++.|+.+++..  |..+...+..+..++...|++++|...+++... ..+.+...+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~   81 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-KNYNLANAYIG   81 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hCcchHHHHHH
Confidence            345788888999999999999999999999988  534556666789999999999999999999985 44456677888


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc---hHHHH
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSV-------ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD---KISYG  172 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~  172 (403)
                      +..++...|++++|+..|++..+..+. +.       ..|..+...+...|++++|+..|++..+   ..|+   ...+.
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~  157 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALY  157 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHH
Confidence            999999999999999999999886543 44       4577888889999999999999999975   3454   56677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRI  245 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  245 (403)
                      .+..+|...|     ..+++++...+. .+...|....  ....+.+++|+..+++..+.  .|+......++
T Consensus       158 ~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l  220 (228)
T 4i17_A          158 SLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence            7777776443     445566655432 2344444333  34456789999999999987  45544443333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.38  E-value=4.8e-12  Score=106.16  Aligned_cols=228  Identities=12%  Similarity=0.088  Sum_probs=151.4

Q ss_pred             ccCChHHHHHHHHHhhhcc-----CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC------C-CCCCHHHHHHHH
Q 015673           37 SEFDPDKALDIYSSVSKHY-----ASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND------P-KITQEPYLCNLI  104 (403)
Q Consensus        37 ~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~  104 (403)
                      ..|++++|+..|+++.+.-     ..++....++..+...+...|++++|...++++...      . .+.....+..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4567777777777776521     112335667788999999999999999999988643      1 223344678899


Q ss_pred             HHHhccCCHHHHHHHHHHHHhC------C-CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC------CCCCchHHH
Q 015673          105 RSYGQAGMFDHAMRTFDQMDEL------G-TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY------NLSPDKISY  171 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~  171 (403)
                      .++...|++++|+..|+++.+.      . .+....++..+...+...|++++|..++++..+..      ..+....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999998764      1 12346778888999999999999999999887541      122245678


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhC-------CCCC-chhhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCc
Q 015673          172 GLLLKSHCDSGSSDKALELLNEMENK-------GVEV-TTVTYTTVLNCLYKQGNAE------EAERLWSEMEKKGVDLD  237 (403)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~  237 (403)
                      ..+..+|...|++++|..+++++.+.       ...+ ....+..+...+...+...      .+...+.....  ..|+
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  250 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT  250 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence            88999999999999999999988753       1122 2233333333333333222      22222221111  1122


Q ss_pred             -hHHHHHHHhhh-cCCChHHHHHHHHHHHHC
Q 015673          238 -VAAYNVRITNT-YGGDPERLKELIDEMRDA  266 (403)
Q Consensus       238 -~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~  266 (403)
                       ...+..+...+ ..|++++|...+++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             33444555555 889999999999887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.37  E-value=6e-10  Score=92.47  Aligned_cols=269  Identities=14%  Similarity=0.054  Sum_probs=155.8

Q ss_pred             HHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673           69 VRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                      ++-..-.|++..++.-..++.   .........-+.+++...|+++..         ....|....+..+.. |...   
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~---   83 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDT---   83 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTT---
T ss_pred             HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhcc---
Confidence            455556788877777444332   112222333355777777776632         112233334333333 3332   


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGV-EVTTVTYTTVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~  227 (403)
                       .++..|+++... + +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus        84 -~a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~  160 (310)
T 3mv2_B           84 -KNIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD  160 (310)
T ss_dssp             -TCCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -cHHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             267777777653 2 44555556777788888888888888887766543 2356667777788888888888888888


Q ss_pred             HHHHcCCCC-----chHHHHHHHhhh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHH
Q 015673          228 EMEKKGVDL-----DVAAYNVRITNT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEG  297 (403)
Q Consensus       228 ~~~~~~~~~-----~~~~~~~ll~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  297 (403)
                      +|.+.  .|     +..+...+..+.     ..+++..|..+|+++.+.  .|+..+...++.++.+.|++++|...++.
T Consensus       161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88765  44     244444444332     233777888888887654  34423333444477777888888888776


Q ss_pred             HHHC-----C----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          298 LEEN-----G----CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI  368 (403)
Q Consensus       298 ~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (403)
                      +.+.     .    -+.|+.++..+|......|+  +|.++++++.+.. |.++.+.           ++.+....|+++
T Consensus       237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~-----------d~~~k~~~Fd~~  302 (310)
T 3mv2_B          237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIK-----------HHQEIDAKFDEL  302 (310)
T ss_dssp             HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHH-----------HHHHHHHHHHHH
T ss_pred             HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHH-----------HHHHHHHHHHHH
Confidence            5532     0    03355566556555555665  7777777777654 3333321           123445556666


Q ss_pred             HHhCCc
Q 015673          369 KKKFPP  374 (403)
Q Consensus       369 ~~~~~~  374 (403)
                      ..++.+
T Consensus       303 ~~ky~~  308 (310)
T 3mv2_B          303 VRKYDT  308 (310)
T ss_dssp             HHTCC-
T ss_pred             HHHhcC
Confidence            555543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.37  E-value=1.4e-09  Score=90.23  Aligned_cols=79  Identities=11%  Similarity=-0.038  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-CCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          116 AMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-SPDKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       116 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      |+..|++..+.+ .++..++..+..++...|++++|++++.+.+.. +. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            444444444433 223333344444555555555555555554322 11 123344444555555555555555555555


Q ss_pred             Hh
Q 015673          195 EN  196 (403)
Q Consensus       195 ~~  196 (403)
                      .+
T Consensus       163 ~~  164 (310)
T 3mv2_B          163 TN  164 (310)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.36  E-value=3.9e-09  Score=98.41  Aligned_cols=363  Identities=10%  Similarity=0.020  Sum_probs=235.7

Q ss_pred             cccchhHHHHHhhhhccCCh--------HHHHHHHHHhhhcc-C-CCCcchhhHHHHHHHHH---------hcCCcchHH
Q 015673           22 TASSISVSKAKSKLRSEFDP--------DKALDIYSSVSKHY-A-SPVSSRYAQDLTVRRLA---------KSKRFSDIE   82 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~--------~~A~~~~~~~~~~~-~-~p~~~~~~~~~l~~~~~---------~~~~~~~a~   82 (403)
                      +|+...|..-+....+.++.        +...++|+.++..- . .+ .+...|...+....         .+++++.+.
T Consensus       136 ~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~-~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R  214 (679)
T 4e6h_A          136 NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP-KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR  214 (679)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence            36666777766655554433        34558888877643 2 23 24456766665543         234577899


Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHhc-------------cCCHHHHHHHHHHHHh--CCC----C-----------C--
Q 015673           83 TLIESHKNDPKITQEPYLCNLIRSYGQ-------------AGMFDHAMRTFDQMDE--LGT----P-----------R--  130 (403)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~--~~~----~-----------~--  130 (403)
                      .+|+.+...+......+|......-..             ..+++.|...+..+..  .++    +           |  
T Consensus       215 ~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~  294 (679)
T 4e6h_A          215 KLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKP  294 (679)
T ss_dssp             HHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCT
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCC
Confidence            999998853332223344322221111             1234445555554321  111    1           1  


Q ss_pred             c------HHHHHHHHHHHHhcCC-------cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 015673          131 S------VISFNALLFACTRSRL-------YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKAL-ELLNEMEN  196 (403)
Q Consensus       131 ~------~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~  196 (403)
                      +      ...|...+..--..+.       .+.+..+|++.+..  ++-+...|...+..+...|+.++|. ++|++...
T Consensus       295 ~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~  372 (679)
T 4e6h_A          295 NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ  372 (679)
T ss_dssp             TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            0      2345555544333221       12345678888774  4446777888888888889999997 99999987


Q ss_pred             CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCc------------hHHHHHHHhhh-cCCChH
Q 015673          197 KGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG---------VDLD------------VAAYNVRITNT-YGGDPE  254 (403)
Q Consensus       197 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~-~~~~~~  254 (403)
                      . .+.+...|...+...-+.|+++.|.++|+.+.+..         ..|+            ...|...+... +.|+.+
T Consensus       373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~  451 (679)
T 4e6h_A          373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA  451 (679)
T ss_dssp             H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence            5 55677778888888999999999999999988641         0132            22455555555 778999


Q ss_pred             HHHHHHHHHHHCCCCCChhcHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 015673          255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKN-EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKES  333 (403)
Q Consensus       255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  333 (403)
                      .|..+|....+.-..+....|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.
T Consensus       452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999998751112233343333333344 4589999999999876 3456677778888888899999999999999


Q ss_pred             HhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          334 VMVHKIP--DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       334 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      +.....+  ....|..++..-.+.|+.+.+.++.+++.+.+|.+.  ....+...|+...
T Consensus       531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~--~~~~f~~ry~~~~  588 (679)
T 4e6h_A          531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN--KLEEFTNKYKVLD  588 (679)
T ss_dssp             TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC--HHHHHHHHTCBTT
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc--HHHHHHHHhcCCc
Confidence            8765321  346788888888899999999999999999887653  2344556665543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.35  E-value=3.1e-11  Score=101.16  Aligned_cols=159  Identities=14%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             HhcCCcchHHHHHHHhhcC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCcHHHHHHH
Q 015673           73 AKSKRFSDIETLIESHKND-------PKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL------GT-PRSVISFNAL  138 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l  138 (403)
                      ...|++++|...+++....       ..+.....+..+..++...|++++|+..|+++.+.      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3456666666666665431       12223345566777777777777777777766543      11 1124455566


Q ss_pred             HHHHHhcCCcCcHHHHHHHchhhC-----C-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCchhh
Q 015673          139 LFACTRSRLYDKVPILFDEIPKKY-----N-LSPDKISYGLLLKSHCDSGSSDKALELLNEMENK------G-VEVTTVT  205 (403)
Q Consensus       139 l~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~  205 (403)
                      ...|...|++++|...+++..+..     . .+....++..+...|...|++++|...++++.+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            666666666666666666654421     0 1222344555556666666666666666655443      1 1112344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          206 YTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       206 ~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      +..+..+|...|++++|...+++..+
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555555566666666655555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=9e-11  Score=97.40  Aligned_cols=190  Identities=9%  Similarity=-0.042  Sum_probs=120.3

Q ss_pred             CcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCC--CCC
Q 015673           21 TTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPK--ITQ   96 (403)
Q Consensus        21 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~   96 (403)
                      .+.++..+......+...|++++|+..|+.+++..  |..  ...++..+..++...|++++|...|+++.....  +..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            34455677788888999999999999999999887  432  256677888899999999999999999875322  122


Q ss_pred             HHHHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch
Q 015673           97 EPYLCNLIRSYGQ--------AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK  168 (403)
Q Consensus        97 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  168 (403)
                      ...+..+..++..        .|++++|+..|+++.+..+. +......+..              +..+...     -.
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~-----~~  148 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK-----LA  148 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH-----HH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH-----HH
Confidence            3456678888888        89999999999998875532 2222222110              0000000     01


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEV--TTVTYTTVLNCLYKQ----------GNAEEAERLWSEMEKK  232 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~  232 (403)
                      ..+..+...|.+.|++++|...|+++.+.....  ....+..+..+|...          |++++|...|+++.+.
T Consensus       149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            123455556666666666666666665532110  223455555555544          6666666666666654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.28  E-value=9.2e-10  Score=92.87  Aligned_cols=105  Identities=11%  Similarity=-0.053  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCCCc-hHHHHHHHHHHHhcCChHHH
Q 015673          112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLSPD-KISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a  187 (403)
                      ++++|...|++.               ...|...|++++|...|.+..+..   +.+++ ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366666666655               234555666666666666554321   11111 34666777777777777777


Q ss_pred             HHHHHHHHhCC----CCC-chhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 015673          188 LELLNEMENKG----VEV-TTVTYTTVLNCLYKQ-GNAEEAERLWSEMEK  231 (403)
Q Consensus       188 ~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~  231 (403)
                      +..+++..+..    ... -..++..+..+|... |++++|+..|++..+
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            77777665421    000 123455566666664 666666666666554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.26  E-value=4.6e-10  Score=94.73  Aligned_cols=222  Identities=12%  Similarity=0.053  Sum_probs=157.6

Q ss_pred             CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCc-hhhHHHHHHHHHhcCCHHH
Q 015673          147 LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENK----GVEVT-TVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~  221 (403)
                      ++++|...|++.                ...|...|++++|...|++..+.    |.+++ ..+|+.+..+|...|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            366676666665                44677899999999999988653    22222 5688999999999999999


Q ss_pred             HHHHHHHHHHcCC---CCc--hHHHHHHHhhh-cC-CChHHHHHHHHHHHHCCCCC-C----hhcHHHHHHHHHhcCChH
Q 015673          222 AERLWSEMEKKGV---DLD--VAAYNVRITNT-YG-GDPERLKELIDEMRDAGLKP-D----TISYNFLMTCYCKNEMMD  289 (403)
Q Consensus       222 a~~~~~~~~~~~~---~~~--~~~~~~ll~~~-~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~  289 (403)
                      |+..+++..+...   .+.  ...++.+-..+ .. |++++|...|++..+..... +    ..++..+...+.+.|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            9999998876421   111  23455555566 65 99999999999987642110 1    346788899999999999


Q ss_pred             HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hc
Q 015673          290 EAKKVYEGLEENGCSPNA------TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF------NTVKLLVEGLV--KK  355 (403)
Q Consensus       290 ~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~  355 (403)
                      +|+..|++..+.......      ..|..+..++...|++++|+..|++.++..  |+.      ..+..++.++.  ..
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~  253 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS  253 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence            999999999876422221      156777888999999999999999988643  321      23444566664  45


Q ss_pred             CCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          356 KKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       356 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      +++++|+..|+++.+ ..|.....|..+-..+
T Consensus       254 ~~~~~A~~~~~~~~~-l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          254 EQLSEHCKEFDNFMR-LDKWKITILNKIKESI  284 (292)
T ss_dssp             TTHHHHHHHHTTSSC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCc-cHHHHHHHHHHHHHHh
Confidence            678888888877755 5666666666655544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.24  E-value=1.5e-10  Score=92.40  Aligned_cols=112  Identities=8%  Similarity=-0.058  Sum_probs=59.0

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHH----------------HHHHHHhcCCcchHHHHHHHhh
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDL----------------TVRRLAKSKRFSDIETLIESHK   89 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~   89 (403)
                      ..+......+...|++++|+..|+.+.+.+  |. +...+..                +..++...|++++|...|++..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--ID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344556677888999999999999999987  53 3344444                4444444444444444444443


Q ss_pred             cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           90 NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                      . ..|.+...+..+..++...|++++|+..|+++.+..+. +..++..+..+|
T Consensus        82 ~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~  132 (208)
T 3urz_A           82 Q-KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYY  132 (208)
T ss_dssp             H-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             H-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence            2 22233334444444444444444444444444443321 333444444433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.23  E-value=2.2e-08  Score=83.97  Aligned_cols=236  Identities=10%  Similarity=0.002  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--CcCcHHHHHHHchhhCCCCCchHHHHHHHHHH----Hhc---CC
Q 015673          113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSR--LYDKVPILFDEIPKKYNLSPDKISYGLLLKSH----CDS---GS  183 (403)
Q Consensus       113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~  183 (403)
                      .++|+.+++.++...+. +..+|+.--..+...|  ++++++.+++.+...  .+-+..+|+.-...+    ...   ++
T Consensus        49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCC
Confidence            34566666666554432 3444555555555555  555555555555542  222333333333222    222   44


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEM  263 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~  263 (403)
                      +++++++++++.+.. +-+..+|+.-..++.+.|.++                                .+++++.++.+
T Consensus       126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~--------------------------------~~~EL~~~~~~  172 (306)
T 3dra_A          126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN--------------------------------DAKELSFVDKV  172 (306)
T ss_dssp             THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT--------------------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC--------------------------------hHHHHHHHHHH
Confidence            555555555555442 224444444444444444444                                01444445554


Q ss_pred             HHCCCCCChhcHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 015673          264 RDAGLKPDTISYNFLMTCYCKNEM------MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK-AYKVFKESVMV  336 (403)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~  336 (403)
                      .+.+.. |...|+.-...+...+.      ++++++.+..++... +-|...|+.+...+.+.|+... +..+..++.+.
T Consensus       173 i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  250 (306)
T 3dra_A          173 IDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL  250 (306)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred             HHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            444322 44444444444444444      788888888888775 5678888888888888777544 55566666543


Q ss_pred             C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673          337 H--KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE  386 (403)
Q Consensus       337 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  386 (403)
                      +  -+.++..+..+..+|.+.|+.++|.++++.+.++..|.....|+.....
T Consensus       251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence            2  2457788889999999999999999999999888889888899866553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.22  E-value=2.4e-10  Score=108.05  Aligned_cols=155  Identities=12%  Similarity=0.005  Sum_probs=95.6

Q ss_pred             HhcCCcchHHHHHHHhhc-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 015673           73 AKSKRFSDIETLIESHKN-------DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRS  145 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  145 (403)
                      ...|++++|++.+++...       ...+.+...+..+..++...|++++|+..|+++.+.+.. +...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence            556666666666666651       123344455566666666667777777776666664432 556666666666666


Q ss_pred             CCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015673          146 RLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERL  225 (403)
Q Consensus       146 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  225 (403)
                      |++++|+..|++..+.  .+.+...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|+..
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777776666542  22345556666666666677766 66666666542 23455666666666677777777776


Q ss_pred             HHHHHHc
Q 015673          226 WSEMEKK  232 (403)
Q Consensus       226 ~~~~~~~  232 (403)
                      |++..+.
T Consensus       557 ~~~al~l  563 (681)
T 2pzi_A          557 LDEVPPT  563 (681)
T ss_dssp             HHTSCTT
T ss_pred             HHhhccc
Confidence            6666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.22  E-value=1.2e-10  Score=87.57  Aligned_cols=146  Identities=12%  Similarity=-0.003  Sum_probs=111.4

Q ss_pred             HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc
Q 015673           31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA  110 (403)
Q Consensus        31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (403)
                      +...+...|++++|+..++......  |. ....+..+...|.+.|++++|++.|++... ..|.+...|..+..++.+.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP--RQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQERDPKAHRFLGLLYELE   78 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH--HH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Confidence            5667778889999999999988766  43 445566788999999999999999999874 4556777888899999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH-HHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL-FDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      |++++|+..|++..+..+. +..++..+...|.+.|+++++... +++..+.  .|-+...|......+...|+
T Consensus        79 ~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           79 ENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred             CchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999886643 678888888999999998887665 4776653  23456667777666666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.21  E-value=7.4e-10  Score=81.25  Aligned_cols=129  Identities=20%  Similarity=0.229  Sum_probs=82.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC  179 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (403)
                      +..++..+...|++++|..+|+.+.+.+. .+...+..+...+...|++++|..+++++.+.  .+.+...+..+...+.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence            45566666666777777777776665443 24556666666666667777777777666543  2334556666667777


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ..|++++|.++++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            7777777777777766652 234556666777777777777777777766654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.21  E-value=9.5e-10  Score=91.18  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=42.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-hHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS---VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-KISYGLLL  175 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~  175 (403)
                      +..+...+.+.|++++|+..|+.+.+..+. +   ...+..+..++.+.|++++|+..|+++.+...-.|. ...+..+.
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg   96 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA   96 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence            333444444445555555555544443211 1   334444444444445555555555444433111111 22344444


Q ss_pred             HHHHh--------cCChHHHHHHHHHHHhC
Q 015673          176 KSHCD--------SGSSDKALELLNEMENK  197 (403)
Q Consensus       176 ~~~~~--------~~~~~~a~~~~~~~~~~  197 (403)
                      .++..        .|++++|...|+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            44444        55555555555555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.21  E-value=2.3e-10  Score=88.67  Aligned_cols=162  Identities=12%  Similarity=0.052  Sum_probs=77.9

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS  106 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  106 (403)
                      .+......+...|++++|+..|+.+.+..  |. +...+..+...+...|++++|...++.+.....  +...+..+...
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~   82 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL   82 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence            34455566666677777777777666665  33 345555666666666777777666666653221  33222211111


Q ss_pred             -HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          107 -YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       107 -~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                       +...+....|+..|++..+..+. +...+..+..++...|++++|...|+++.+...-..+...+..+...+...|+.+
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence             11111222344445554443321 3444455555555555555555555554432110112334444455555555555


Q ss_pred             HHHHHHHHH
Q 015673          186 KALELLNEM  194 (403)
Q Consensus       186 ~a~~~~~~~  194 (403)
                      +|...|++.
T Consensus       162 ~A~~~y~~a  170 (176)
T 2r5s_A          162 AIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.20  E-value=1.7e-09  Score=79.26  Aligned_cols=120  Identities=16%  Similarity=0.142  Sum_probs=78.0

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|.+
T Consensus        13 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~   90 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE   90 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHH
Confidence            4444555555555444432 2244555666666777777777777777776654 3455666677777777777777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      .++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus        91 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           91 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            777776654 445667777777777778888887777777653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=1.5e-09  Score=87.77  Aligned_cols=186  Identities=10%  Similarity=-0.021  Sum_probs=124.7

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCC-CCH-HHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKI-TQE-PYL  100 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~  100 (403)
                      +..+..+...+...|++++|+..|+.+.+..  |..  ...++..++.++.+.|++++|+..|+++...... +.. ..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            3456667788889999999999999999877  432  2456778889999999999999999998753222 211 134


Q ss_pred             HHHHHHHhc------------------cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC
Q 015673          101 CNLIRSYGQ------------------AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY  162 (403)
Q Consensus       101 ~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  162 (403)
                      ..+..++..                  .|++++|+..|+++.+..+. +..++......          ..+...+    
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence            444444443                  56778888888887775422 22222211110          0001111    


Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          163 NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT---TVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                           ......+...|.+.|++++|...|+++.+.. +.+   ...+..+..++.+.|++++|.+.++.+...+
T Consensus       147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                 1122456778888999999999999988752 212   2567788899999999999999999888764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=1.2e-09  Score=103.16  Aligned_cols=173  Identities=12%  Similarity=-0.003  Sum_probs=136.9

Q ss_pred             HhcCChHHHHHHHHHHH--------hCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-c
Q 015673          179 CDSGSSDKALELLNEME--------NKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-Y  249 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~  249 (403)
                      ...|++++|++.+++..        +. .+.+...+..+..++...|++++|+..|+++.+.... +...+..+-..+ .
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            78899999999999988        43 3446678888999999999999999999999887432 334444444444 8


Q ss_pred             CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015673          250 GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKV  329 (403)
Q Consensus       250 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (403)
                      .|++++|...|++..+.. +.+...+..+..+|.+.|++++ ...|++..+.+ +.+...|..+..++...|++++|+..
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            899999999999998874 3356788889999999999999 99999998875 55678899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673          330 FKESVMVHKIPDFNTVKLLVEGLVKKKK  357 (403)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~  357 (403)
                      |+++++.+ +.+...+..+..++...|+
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            99988655 3446777777778766555

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=8.1e-09  Score=82.53  Aligned_cols=177  Identities=14%  Similarity=-0.007  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccC----CHHHHH
Q 015673           42 DKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAG----MFDHAM  117 (403)
Q Consensus        42 ~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~  117 (403)
                      .+|++.|++..+.+     +..++..+...+...+++++|...|++....+   +...+..|...|.. +    ++++|+
T Consensus         3 ~eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             -CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             chHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence            35677777777766     45566777778888888888888888877543   44556667777776 6    788888


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCC-CchHHHHHHHHHHHh----cCChHHHH
Q 015673          118 RTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLS-PDKISYGLLLKSHCD----SGSSDKAL  188 (403)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~  188 (403)
                      +.|++..+.|   +..++..|...|..    .+++++|+.+|++..+. +.. .+...+..|...|..    .+++++|.
T Consensus        74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  149 (212)
T 3rjv_A           74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKAS  149 (212)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            8888887653   56677777777766    67788888888887653 211 125667777777777    67788888


Q ss_pred             HHHHHHHhCCCCCchhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 015673          189 ELLNEMENKGVEVTTVTYTTVLNCLYKQ-G-----NAEEAERLWSEMEKKG  233 (403)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~  233 (403)
                      .+|++..+.  +.+...+..|..+|... |     ++++|...|+...+.|
T Consensus       150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            888887775  22444566666666543 2     7788888888777765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.12  E-value=4.3e-08  Score=78.29  Aligned_cols=180  Identities=12%  Similarity=-0.007  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCC----ChHHHHHHHHH
Q 015673          187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGG----DPERLKELIDE  262 (403)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~a~~~~~~  262 (403)
                      |++.|++..+.|   +...+..+...|...+++++|+..|++..+.+   +...+..+-..+..+    ++++|...|++
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEK   78 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            444455444442   34444555555555555555555555555543   222222222223113    56666666666


Q ss_pred             HHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCChHHHHHHHHHH
Q 015673          263 MRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCS-PNATTFRTWIYHLCG----SGNFDKAYKVFKES  333 (403)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~  333 (403)
                      ..+.|   +...+..|...|..    .+++++|..+|++..+.|.. .+...+..|...|..    .++.++|+.+|++.
T Consensus        79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            65543   44455556666655    56677777777776665411 014556666666666    66677777777777


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhCCchhH
Q 015673          334 VMVHKIPDFNTVKLLVEGLVKK-K-----KIKEAKGVIRTIKKKFPPNVL  377 (403)
Q Consensus       334 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~~~  377 (403)
                      .+.  +.+...+..|...|... |     ++++|...+++..+...++..
T Consensus       156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~  203 (212)
T 3rjv_A          156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC  203 (212)
T ss_dssp             HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            665  12334555566666542 2     677777777777665554433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=9.7e-10  Score=92.42  Aligned_cols=166  Identities=10%  Similarity=-0.017  Sum_probs=134.6

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHH-HHH
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFN-ALL  139 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll  139 (403)
                      +...+..+...+...|++++|...|+++.. ..|.+...+..+...+.+.|++++|...++++....  |+..... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ-LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            445566788889999999999999999874 455667788889999999999999999999987755  4443333 333


Q ss_pred             HHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHhcCC
Q 015673          140 FACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-VTTVTYTTVLNCLYKQGN  218 (403)
Q Consensus       140 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~  218 (403)
                      ..+...++.++|...+++..+.  .+.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            3467788889999999998763  4556788999999999999999999999999886332 126789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 015673          219 AEEAERLWSEMEK  231 (403)
Q Consensus       219 ~~~a~~~~~~~~~  231 (403)
                      .++|...+++...
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.11  E-value=1.1e-09  Score=87.25  Aligned_cols=91  Identities=10%  Similarity=0.065  Sum_probs=42.6

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHhCCCCCc
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN----------------LIRSYGQAGMFDHAMRTFDQMDELGTPRS  131 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  131 (403)
                      ....+...|++++|...|++.... .|.+...+..                +..++.+.|++++|+..|++..+..+. +
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~   87 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-N   87 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence            344455666666666666665531 2222233333                444444444444444444444443322 3


Q ss_pred             HHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673          132 VISFNALLFACTRSRLYDKVPILFDEIPK  160 (403)
Q Consensus       132 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  160 (403)
                      ...+..+..++...|++++|+..|++..+
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  116 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQ  116 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444444444444444444444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=1.6e-08  Score=81.73  Aligned_cols=188  Identities=9%  Similarity=0.013  Sum_probs=120.2

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch---HHH
Q 015673          167 DKISYGLLLKSHCDSGSSDKALELLNEMENKGVE-V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV---AAY  241 (403)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~  241 (403)
                      +...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.......   ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4455667788889999999999999999875221 1 1356778889999999999999999999886433221   122


Q ss_pred             HHHHhhhc------------------CCChHHHHHHHHHHHHCCCCCChh-cHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015673          242 NVRITNTY------------------GGDPERLKELIDEMRDAGLKPDTI-SYNFLMTCYCKNEMMDEAKKVYEGLEENG  302 (403)
Q Consensus       242 ~~ll~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  302 (403)
                      ......+.                  .|++++|...|+++.+.  .|+.. .+......          ..+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence            22221111                  34455555555555543  22221 11111000          00000000   


Q ss_pred             CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          303 CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD---FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                           .....+...+.+.|++++|+..|+++++.. +.+   ...+..+..+|.+.|++++|.+.++.+....|.+
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                 011245667889999999999999998764 222   3578889999999999999999999888754443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.10  E-value=1.4e-09  Score=84.28  Aligned_cols=162  Identities=9%  Similarity=-0.032  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HH
Q 015673           65 QDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA-CT  143 (403)
Q Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~  143 (403)
                      +......+...|++++|...|++... ..|.+...+..+..++...|++++|+..|+.+....+  +...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD-ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH-HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence            44667778888889999888888764 3455667778888888888999999888888776543  44333322212 22


Q ss_pred             hcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHhcCCHHHH
Q 015673          144 RSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEV-TTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       144 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      ..+...++...+++..+.  .+.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus        86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            333444577888887653  23356778888888888888888888888887764322 345777888888888888888


Q ss_pred             HHHHHHHHH
Q 015673          223 ERLWSEMEK  231 (403)
Q Consensus       223 ~~~~~~~~~  231 (403)
                      ...|++...
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.09  E-value=4.4e-09  Score=76.25  Aligned_cols=112  Identities=14%  Similarity=0.060  Sum_probs=97.1

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL  352 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (403)
                      ..+......|.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..+++.++.+ +.+...|..+..+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            456778889999999999999999998875 5678899999999999999999999999999876 66788999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          353 VKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      ...|++++|.+.|++..+ ..|+...++..|..++
T Consensus        92 ~~~~~~~~A~~~~~~al~-l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQ-VDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence            999999999999999998 4556566887776654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.09  E-value=8.2e-10  Score=82.98  Aligned_cols=139  Identities=18%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|+..++...... +.+...+..+...|.+.|++++|...|++.++.. +-+...|..+..++...|++++|+.
T Consensus         9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence            4567777777777765431 1134556678888888999999999999888764 4567788888888899999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          329 VFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGV-IRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      .|++.++.. +.++.++..+...|.+.|++++|.+. +++..+ ..|+....|......+...+
T Consensus        87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-LFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-HSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHhC
Confidence            998888766 55678888888888888888776554 577776 44455556665555544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.08  E-value=3.7e-09  Score=88.86  Aligned_cols=165  Identities=12%  Similarity=0.027  Sum_probs=91.8

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673          165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR  244 (403)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (403)
                      +.+...+..+...+...|++++|...|+++.+. .+-+...+..+..++...|++++|...++++....  |+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            334455666666677777777777777777665 23355666667777777777777777777665542  332222221


Q ss_pred             Hhh-h-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccC
Q 015673          245 ITN-T-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCS-PNATTFRTWIYHLCGSG  321 (403)
Q Consensus       245 l~~-~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  321 (403)
                      ... + ..++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            111 1 4445555555555555542 224455555666666666666666666665554211 01345555555555566


Q ss_pred             ChHHHHHHHHHH
Q 015673          322 NFDKAYKVFKES  333 (403)
Q Consensus       322 ~~~~a~~~~~~~  333 (403)
                      +.++|...+++.
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            655555555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.08  E-value=2.1e-09  Score=99.78  Aligned_cols=154  Identities=11%  Similarity=-0.043  Sum_probs=115.6

Q ss_pred             cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM  117 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  117 (403)
                      .|++++|++.|+++.+..  |. +...+..+...+...|++++|.+.+++... ..+.+...+..+..++...|++++|.
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLA-LHPGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             ---------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            478899999999998877  43 567788899999999999999999999984 45566778888999999999999999


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc---CChHHHHHHHHHH
Q 015673          118 RTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS---GSSDKALELLNEM  194 (403)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~  194 (403)
                      +.|++..+.... +...+..+..++.+.|++++|...|++..+.  .+.+...+..+..++...   |++++|.+.+++.
T Consensus        78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            999999887643 6788999999999999999999999998764  334567888899999999   9999999999999


Q ss_pred             HhCC
Q 015673          195 ENKG  198 (403)
Q Consensus       195 ~~~~  198 (403)
                      .+.+
T Consensus       155 l~~~  158 (568)
T 2vsy_A          155 VAQG  158 (568)
T ss_dssp             HHHT
T ss_pred             HhcC
Confidence            8764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.06  E-value=5.3e-09  Score=97.07  Aligned_cols=155  Identities=8%  Similarity=-0.092  Sum_probs=118.4

Q ss_pred             cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHH
Q 015673           75 SKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPIL  154 (403)
Q Consensus        75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  154 (403)
                      .|++++|...+++... ..+.+...+..+...+...|++++|++.|++..+.... +...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR-HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788899999998874 45566778888999999999999999999999987643 688899999999999999999999


Q ss_pred             HHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 015673          155 FDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ---GNAEEAERLWSEMEK  231 (403)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~  231 (403)
                      +++..+.  .+.+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+..++...   |++++|.+.+++..+
T Consensus        80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            9999874  34467789999999999999999999999998863 34678888999999999   999999999999988


Q ss_pred             cCC
Q 015673          232 KGV  234 (403)
Q Consensus       232 ~~~  234 (403)
                      .+.
T Consensus       157 ~~p  159 (568)
T 2vsy_A          157 QGV  159 (568)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.05  E-value=1.4e-07  Score=79.06  Aligned_cols=179  Identities=9%  Similarity=-0.067  Sum_probs=125.3

Q ss_pred             HhhhhccCC-hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcC--CcchHHHHHHHhhcCCCCCCHHHHHHHHHHH-
Q 015673           32 KSKLRSEFD-PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK--RFSDIETLIESHKNDPKITQEPYLCNLIRSY-  107 (403)
Q Consensus        32 ~~~l~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-  107 (403)
                      +++..+.|. .++|+++++.++..+  |. ...+|+.-...+...+  ++++++..++.+.. ..|.+..+|+.-..++ 
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-~nPk~y~aW~~R~~iL~  114 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINEL--AS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIAL-DNEKNYQIWNYRQLIIG  114 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-HCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHC--cH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HCcccHHHHHHHHHHHH
Confidence            444445554 468999999999988  54 5566777778888888  88889998888875 3444555565533333 


Q ss_pred             ---hcc---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC--cHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673          108 ---GQA---GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD--KVPILFDEIPKKYNLSPDKISYGLLLKSHC  179 (403)
Q Consensus       108 ---~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (403)
                         ...   +++++++.+++.+.+..++ +..+|+.-.-.+.+.|.++  ++++.++++.+.  -+-|...|+.......
T Consensus       115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          115 QIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             HHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence               344   6788888888888887665 7888888777777788887  888888888764  3446667776666666


Q ss_pred             hcCC------hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 015673          180 DSGS------SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN  218 (403)
Q Consensus       180 ~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  218 (403)
                      ..+.      ++++++.++.+.... +-|...|+.+...+.+.|+
T Consensus       192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred             hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence            6665      677777777776653 3466667666666666665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.05  E-value=6.4e-09  Score=88.36  Aligned_cols=168  Identities=10%  Similarity=0.020  Sum_probs=117.9

Q ss_pred             ccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 015673           37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHA  116 (403)
Q Consensus        37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  116 (403)
                      ..|++++|.++++++.+..  +. .   +      +...++++.|...|.+.               +..|...|++++|
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~-~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A   55 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KT-S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA   55 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CC-C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--cc-c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence            3578889999999888765  21 1   0      11146777777777654               4567788999999


Q ss_pred             HHHHHHHHhCCC----C-CcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCCC-chHHHHHHHHHHHhcCChHHH
Q 015673          117 MRTFDQMDELGT----P-RSVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLSP-DKISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       117 ~~~~~~~~~~~~----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a  187 (403)
                      ...|.+..+...    . .-..+|+.+...|...|++++|+..|++..+..   +.+. -..++..+...|.. |++++|
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A  134 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA  134 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence            999888755311    1 114577888888999999999999998876431   1111 13567788888888 999999


Q ss_pred             HHHHHHHHhCCCC-----CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          188 LELLNEMENKGVE-----VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       188 ~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      +..|++..+....     ....++..+..+|...|++++|+..|++..+.
T Consensus       135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999887653110     01456777888888889999998888887653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.03  E-value=1.2e-06  Score=79.10  Aligned_cols=320  Identities=8%  Similarity=-0.025  Sum_probs=160.9

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC-cchHHHHHHHhhcC-C-CCCCHHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR-FSDIETLIESHKND-P-KITQEPYLCNL  103 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~-~~~~~~~~~~l  103 (403)
                      .|...+..+-. |+++.+..+|++.....  |  +...|...+....+.+. .+....+|+..... + .+.+...|...
T Consensus        17 vyer~l~~~P~-~~~e~~~~iferal~~~--p--s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           17 IMEHARRLYMS-KDYRSLESLFGRCLKKS--Y--NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHSTTC--C--CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHCCC-CCHHHHHHHHHHHhccC--C--CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            44444554443 88999999999999865  5  66677777766666653 45677788877643 2 35567888888


Q ss_pred             HHHHhc----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh-------------cCCcC-----------------
Q 015673          104 IRSYGQ----AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR-------------SRLYD-----------------  149 (403)
Q Consensus       104 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~-----------------  149 (403)
                      +..+..    .++.+.+.++|++.+......-...|......-..             .+.+.                 
T Consensus        92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s  171 (493)
T 2uy1_A           92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS  171 (493)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence            876542    35688899999998874221111222211110000             00111                 


Q ss_pred             -------------------------cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchh
Q 015673          150 -------------------------KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTV  204 (403)
Q Consensus       150 -------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  204 (403)
                                               .+..+|++++..  .+.+...|...+..+.+.|+.+.|.+++++....  +.+..
T Consensus       172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~  247 (493)
T 2uy1_A          172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF  247 (493)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred             HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence                                     123344444331  2223344444444444555555555555555544  22221


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC---chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC
Q 015673          205 TYTTVLNCLYKQGNAEEAERLWSEMEKKG---------VDL---DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD  271 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~  271 (403)
                      .+..    |....+.++.   ++.+.+.-         ..+   ....|...+... +.++.+.|..+|+.. .. ...+
T Consensus       248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~  318 (493)
T 2uy1_A          248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVG  318 (493)
T ss_dssp             HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCC
T ss_pred             HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCC
Confidence            1111    1111111111   11111100         000   011222222222 455677777777766 21 1112


Q ss_pred             hhcHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673          272 TISYNFLMTCYCK-NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE  350 (403)
Q Consensus       272 ~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (403)
                      ...|...+..-.. .++.+.|..+|+...+.. +-++..+...++.....|+.+.|..+|+++.     .....|...+.
T Consensus       319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~  392 (493)
T 2uy1_A          319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE  392 (493)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            2233221211112 235777777777766542 2234445555666666777777777777652     24566666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 015673          351 GLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .-...|+.+.+..++++..+
T Consensus       393 fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          393 YEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            66666777777777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.97  E-value=7.3e-08  Score=78.97  Aligned_cols=194  Identities=9%  Similarity=-0.042  Sum_probs=143.5

Q ss_pred             HhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHH-------HHHHHhcCCcchHHHHHHHhhc------------CC
Q 015673           32 KSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLT-------VRRLAKSKRFSDIETLIESHKN------------DP   92 (403)
Q Consensus        32 ~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~   92 (403)
                      ...+ ..++++.|++.|.++...+  |. ....|.-+       ...+.+.++..++...+.....            .+
T Consensus        14 ~~~~-~~~d~~~A~~~F~~a~~~d--P~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           14 AVSM-LPMSEARSLDLFTEITNYD--ES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHH-TTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             Hhcc-cCCCHHHHHHHHHHHHHhC--hh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            3344 5899999999999999999  54 45566555       5666666666666666665543            11


Q ss_pred             C--------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673           93 K--------ITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL  164 (403)
Q Consensus        93 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  164 (403)
                      .        .........+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+.....  .
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~  165 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P  165 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C
Confidence            0        0112334557788889999999999999998755  44446667777899999999999999877532  1


Q ss_pred             CCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          165 SPD--KISYGLLLKSHCDSGSSDKALELLNEMENKGVEV--TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       165 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      .|.  ...+..+..++...|++++|+..|++.......|  ..........++.+.|+.++|..+|+++....
T Consensus       166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            221  3467888999999999999999999998654324  34466777888999999999999999999874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.97  E-value=3e-08  Score=79.17  Aligned_cols=124  Identities=10%  Similarity=-0.081  Sum_probs=58.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      +...+...|++++|+..|++..    .|+...+..+...+...|++++|+..|++..+.  .+.+...+..+..++...|
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence            3344444444444444444442    134444444444444445555555444444432  1223344445555555555


Q ss_pred             ChHHHHHHHHHHHhCCCC---------------CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          183 SSDKALELLNEMENKGVE---------------VTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~---------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ++++|.+.|++..+....               .....+..+..+|...|++++|...|+...+.
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            555555555555443110               01144555555566666666666666665554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.94  E-value=8.3e-07  Score=75.23  Aligned_cols=240  Identities=7%  Similarity=-0.029  Sum_probs=144.8

Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhc-C-C
Q 015673          107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDS-G-S  183 (403)
Q Consensus       107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  183 (403)
                      ....+..++|+++++.+....+. +..+|+.--..+...| .+++++.+++.+..  ..+-+..+|+.-...+... + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCC
Confidence            34445567788888888876654 5666777766666677 47788888888775  3445566677666666655 5 7


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAE--------EAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPER  255 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  255 (403)
                      +++++++++++.+.. +-+..+|+.-..++.+.|.++        ++++.++++.+..+.                    
T Consensus       141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~--------------------  199 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR--------------------  199 (349)
T ss_dssp             CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--------------------
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC--------------------
Confidence            778888888877663 336666665555555554444        555555555554322                    


Q ss_pred             HHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----
Q 015673          256 LKELIDEMRDAGLKPDTISYNFLMTCYCKNEM-------MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF-----  323 (403)
Q Consensus       256 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----  323 (403)
                                     |...|+.....+.+.+.       ++++++.+.+++... +-|...|+-+-..+.+.|+.     
T Consensus       200 ---------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~  263 (349)
T 3q7a_A          200 ---------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPIL  263 (349)
T ss_dssp             ---------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred             ---------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccc
Confidence                           33333333333333332       355555555555443 33444554444444443332     


Q ss_pred             ---------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673          324 ---------------DKAYKVFKESVMVH-----KIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV  383 (403)
Q Consensus       324 ---------------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  383 (403)
                                     .+...+..++....     -.+++..+..+++.|...|+.++|.++++.+.++..|--...|+-.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~  343 (349)
T 3q7a_A          264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR  343 (349)
T ss_dssp             HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence                           22222222222211     1467788889999999999999999999999988899888889866


Q ss_pred             HHH
Q 015673          384 EEE  386 (403)
Q Consensus       384 ~~~  386 (403)
                      ...
T Consensus       344 ~~~  346 (349)
T 3q7a_A          344 RRE  346 (349)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.93  E-value=5.1e-07  Score=76.04  Aligned_cols=162  Identities=12%  Similarity=-0.012  Sum_probs=116.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CCchH----HHHHHHhhh-cCCChHHHHHHHHHHHHCCCC-CC----hhcHHH
Q 015673          209 VLNCLYKQGNAEEAERLWSEMEKKGV-DLDVA----AYNVRITNT-YGGDPERLKELIDEMRDAGLK-PD----TISYNF  277 (403)
Q Consensus       209 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  277 (403)
                      .+..+...|++++|..++++..+... .|+..    .+..+...+ ..+++++|...+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            45667788888888888888776432 12211    112222233 667889999999888874322 22    226888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHH
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEE----N-GCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKIP-DFNTVK  346 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~  346 (403)
                      +..+|...|++++|...|+++.+    . +..+. ..++..+...|...|++++|+..+++.++.    +..+ -..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999999873    1 11122 237788899999999999999999987753    2122 267888


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHH
Q 015673          347 LLVEGLVKKKK-IKEAKGVIRTIKK  370 (403)
Q Consensus       347 ~l~~~~~~~g~-~~~a~~~~~~~~~  370 (403)
                      .+..+|.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999994 6999999998864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.92  E-value=1.1e-07  Score=75.91  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=59.2

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|...|++..    .|+...+..+..+|...|++++|...+++..+.. +.+...+..+..++...|++++|+.
T Consensus        18 ~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~   92 (213)
T 1hh8_A           18 DKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK   92 (213)
T ss_dssp             HTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHH
Confidence            4444444444444331    3344455555555555555555555555555442 3344455555555555555555555


Q ss_pred             HHHHHHhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          329 VFKESVMVHKIP----------------DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       329 ~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      .|+++.+.. +.                ....+..+..+|.+.|++++|.+.+++..+..
T Consensus        93 ~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           93 DLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            555555432 11                12445555555555666666666655555533

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.90  E-value=3.3e-08  Score=73.83  Aligned_cols=102  Identities=11%  Similarity=0.001  Sum_probs=83.9

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+.+.|++++|...|+.+.+.. +.+...|..+..++...|++++|+..|++++... +.++..|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            3456777788888999999999999888775 5567788888888999999999999999988776 5567888888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCch
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      |...|++++|...|++..+..+.+
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999988755544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.90  E-value=2.1e-08  Score=73.25  Aligned_cols=125  Identities=10%  Similarity=-0.009  Sum_probs=88.4

Q ss_pred             CCCCCcccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC
Q 015673           17 AGSSTTASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ   96 (403)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   96 (403)
                      .....+.+...+..+...+...|++++|+..|+.+.+..  |. +...+..+...+...|++++|...+++... ..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~   83 (133)
T 2lni_A            8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPTF   83 (133)
T ss_dssp             TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HCTTC
T ss_pred             CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCc
Confidence            334445556677778888888888888888888888776  43 456667777888888888888888888764 23445


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                      ...+..+..++.+.|++++|.+.|++..+.... +...+..+..++...|
T Consensus        84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            666777888888888888888888887765432 4455566655555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=4.8e-07  Score=76.16  Aligned_cols=166  Identities=9%  Similarity=-0.011  Sum_probs=89.1

Q ss_pred             HHHHHhcCCcCcHHHHHHHchhhCCCCCchH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-Cc----hhhHHHH
Q 015673          139 LFACTRSRLYDKVPILFDEIPKKYNLSPDKI----SYGLLLKSHCDSGSSDKALELLNEMENKGVE-VT----TVTYTTV  209 (403)
Q Consensus       139 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  209 (403)
                      +..+...|++++|..++++..+.....|+..    .+..+...+...|++++|+..|+++.+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4556667777777777777655322233321    2334556666667777777777777663221 12    2256777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHC-CCCC-ChhcHHHHHHHHHhcCC
Q 015673          210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA-GLKP-DTISYNFLMTCYCKNEM  287 (403)
Q Consensus       210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~  287 (403)
                      ..+|...|++++|...++++.+.-                           +   .. +..+ ...++..+...|.+.|+
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~---------------------------~---~~~~~~~~~~~~~~nlg~~y~~~~~  211 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQL---------------------------E---ALHDNEEFDVKVRYNHAKALYLDSR  211 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH---------------------------H---HSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHH---------------------------H---hcccchhHHHHHHHHHHHHHHHHhH
Confidence            777777777777777777765310                           0   00 0000 12244455555556666


Q ss_pred             hHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCC-hHHHHHHHHHHH
Q 015673          288 MDEAKKVYEGLEE----NGCSPN-ATTFRTWIYHLCGSGN-FDKAYKVFKESV  334 (403)
Q Consensus       288 ~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~  334 (403)
                      +++|...+++..+    .+..+. ..+|..+..++.+.|+ +++|.+.++++.
T Consensus       212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            6666655555442    111111 3455555555666663 456655555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.88  E-value=1.8e-08  Score=73.02  Aligned_cols=109  Identities=9%  Similarity=-0.004  Sum_probs=77.1

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...+...+..+.+.|++++|++.|+++++.+  |. +...|..+..++...|++++|+..+++... ..+.+...|..+.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg   88 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PE-NAILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHH
Confidence            3456667777888888888888888887777  43 456667777778888888888888887764 3445566677777


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELGTPRSVISFNAL  138 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  138 (403)
                      .++...|++++|++.|++..+..+. +...+..|
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l  121 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV  121 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence            7888888888888888887775532 44444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.88  E-value=3.9e-07  Score=76.75  Aligned_cols=165  Identities=15%  Similarity=0.067  Sum_probs=91.0

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHhhcCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC---Cc--HHHH
Q 015673           66 DLTVRRLAKSKRFSDIETLIESHKNDPKITQE-----PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP---RS--VISF  135 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~~~  135 (403)
                      ...+..+...|++++|.+.+++..........     ..+..+...+...|++++|+..|++..+....   +.  ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            34455666677777777777665533222111     11233445556666777777777766542211   11  3456


Q ss_pred             HHHHHHHHhcCCcCcHHHHHHHchh---hCCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCC-chhh
Q 015673          136 NALLFACTRSRLYDKVPILFDEIPK---KYNLSP--DKISYGLLLKSHCDSGSSDKALELLNEMENKG----VEV-TTVT  205 (403)
Q Consensus       136 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~  205 (403)
                      +.+...|...|++++|...|++..+   .....+  ...++..+..+|...|++++|...+++..+..    ... -..+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            6666667777777777777766652   211111  11456666667777777777777776654321    100 1445


Q ss_pred             HHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015673          206 YTTVLNCLYKQGNAEEA-ERLWSEME  230 (403)
Q Consensus       206 ~~~ll~~~~~~~~~~~a-~~~~~~~~  230 (403)
                      |..+..+|.+.|++++| ...+++..
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            66666666777777666 55555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=4.1e-08  Score=83.40  Aligned_cols=168  Identities=12%  Similarity=0.018  Sum_probs=84.8

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCC---CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC----CCCC-CHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYAS---PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND----PKIT-QEP   98 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~---p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~   98 (403)
                      .|...+..+...|++++|++.|+++......   +.....+|..+...|...|++++|...|++....    +.+. ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4555556666667777777776666554310   1112334555666666666666666666655321    1110 122


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCCCc-hH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPR-----SVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLSPD-KI  169 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~  169 (403)
                      .+..+..+|.. |++++|+..|++..+.....     ...++..+...+.+.|++++|+..|++..+..   +..+. ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            34556666655 66666666666654321100     12345555555566666666666655554321   10011 11


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEME  195 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~  195 (403)
                      .+..++.++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            34444445555556666666555554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.84  E-value=9.1e-08  Score=69.24  Aligned_cols=113  Identities=10%  Similarity=-0.000  Sum_probs=93.9

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3456777888899999999999999998775 5578889999999999999999999999999876 5678889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCC-----chhHHHHHHHHHH
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFP-----PNVLRAWKKVEEE  386 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~  386 (403)
                      +...|++++|...+++..+..|     |+....+..+..+
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            9999999999999999987441     5555566665544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=1.1e-07  Score=72.40  Aligned_cols=128  Identities=16%  Similarity=0.017  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      .+..+...+...|++++|...|+...+.... +...+..+...+...|++++|...+++..+.  .+.+...+..+..++
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            3555666777777777777777777665432 5666777777777777777777777777653  234556677777777


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYT--TVLNCLYKQGNAEEAERLWSEME  230 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~  230 (403)
                      ...|++++|...|+++.+.. +.+...+.  ..+..+...|++++|...+....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            77788888888877776652 22334442  23333666677777777776654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.84  E-value=1.6e-07  Score=67.44  Aligned_cols=112  Identities=18%  Similarity=0.164  Sum_probs=87.3

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4567778888888999999999998888764 4567788888888889999999999998888765 5567788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE  386 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  386 (403)
                      +...|++++|...++++.+..| +....+..+...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~  120 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA  120 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence            9999999999999998887544 334455544443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.82  E-value=1.6e-07  Score=68.38  Aligned_cols=114  Identities=11%  Similarity=-0.019  Sum_probs=91.7

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE  350 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (403)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            45667788888899999999999999988764 4467788888889999999999999999988765 557788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          351 GLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      ++.+.|++++|.+.+++..+.. |+....|..+...+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~  128 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCM  128 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence            9999999999999999988744 44444666555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.82  E-value=5.3e-08  Score=75.26  Aligned_cols=124  Identities=10%  Similarity=0.131  Sum_probs=86.4

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCh--HH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYH-LCGSGNF--DK  325 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~  325 (403)
                      ..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            4567777777777776653 3356677777778888888888888888877654 3456667777777 6677877  88


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          326 AYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      |...++++++.. +.+...+..+..+|...|++++|...++++.+..|.+
T Consensus       100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            888888877765 4556777777888888888888888888877754443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=1.7e-08  Score=75.43  Aligned_cols=100  Identities=13%  Similarity=0.072  Sum_probs=82.7

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE  350 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (403)
                      +...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++++... +.++..+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            34566677888888999999999999888764 5577788888888999999999999999988766 556788888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhC
Q 015673          351 GLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      +|...|++++|...|++..+..
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC
Confidence            9999999999999999887743

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.82  E-value=5.8e-08  Score=70.48  Aligned_cols=122  Identities=10%  Similarity=-0.030  Sum_probs=85.5

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      +.+...+..+...+...|++++|+..|+++....  |. +...+..+...+...|++++|...++..... .+.+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~   84 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYG   84 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHH
Confidence            3345566777777778888888888888887766  33 4556667777777888888888888777642 344456677


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                      .+..++...|++++|...|+...+..+. +...+..+..++.+.|++
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence            7777777888888888888877765432 556666666666666654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.81  E-value=1.7e-06  Score=73.33  Aligned_cols=244  Identities=9%  Similarity=0.046  Sum_probs=158.5

Q ss_pred             hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcC-CcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc-C
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSK-RFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA-G  111 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~  111 (403)
                      .+.+.+..++|+++++.++..+  |. ...+|+.-...+...| .+++++.+++.+.. ..+.+..+|+.-..++.+. +
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~n--P~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~nPKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMN--PA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QNLKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhC--ch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhcC
Confidence            3444556688999999999999  54 5566777777777788 59999999999884 5566777787766666555 6


Q ss_pred             -CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC--------cHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          112 -MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD--------KVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       112 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                       ++++++++++.+.+...+ +..+|+.-.-.+.+.|.++        ++++.++++++.  .+-|...|+.....+.+.+
T Consensus       139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTST
T ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcc
Confidence             889999999999987765 7888887777776666676        788888888764  3457777888777777776


Q ss_pred             C-------hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH--HHHHHHHHHHcCCCCchHHHHHHHhhhcCCCh
Q 015673          183 S-------SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE--AERLWSEMEKKGVDLDVAAYNVRITNTYGGDP  253 (403)
Q Consensus       183 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  253 (403)
                      .       ++++++.++++... .+-|...|+.+-..+.+.|+...  -..++   ...+...+ .....+.        
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--------  282 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PDIETVE--------  282 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC--------------------
T ss_pred             ccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCccccccccc---cccccccc-ccchhHH--------
Confidence            5       57788888777776 33466777766666655554310  00000   00000000 0000000        


Q ss_pred             HHHHHHHHHHHHC-----CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          254 ERLKELIDEMRDA-----GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       254 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                          ....++...     .-.++...+..|+..|...|+.++|.++++.+.+.
T Consensus       283 ----~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          283 ----AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence                111111111     01345667777888888888888888888887643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.81  E-value=1.3e-07  Score=77.48  Aligned_cols=198  Identities=11%  Similarity=0.018  Sum_probs=128.8

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCch--------------
Q 015673          180 DSGSSDKALELLNEMENKGVEVTTVTYTTV-------LNCLYKQGNAEEAERLWSEMEKKGVDLDV--------------  238 (403)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------  238 (403)
                      ..++...|.+.|.++.+.. +-....|..+       ..++...++..+++..+.....  +.|+.              
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            5677788888888877752 2345666655       3444444445555444444333  11110              


Q ss_pred             -------HH-HHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--H
Q 015673          239 -------AA-YNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN--A  307 (403)
Q Consensus       239 -------~~-~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~  307 (403)
                             .. .-.....+ ..|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   11 11122223 6788888888888776653  443355556667888999999999998665431 111  2


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP--DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      ..+..+..++...|++++|+..|++.......|  ..........++.+.|+.++|..+|+++....|.  ...+..|..
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~  249 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence            356777888999999999999999987543314  3456677788899999999999999999885554  557776653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.80  E-value=2.9e-07  Score=69.98  Aligned_cols=119  Identities=15%  Similarity=0.078  Sum_probs=89.0

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|+++.|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|..
T Consensus        25 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~  102 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR  102 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            5666666666666666543 3356677778888888899999999998888764 4567788888888999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 015673          329 VFKESVMVHKIPDFNTVKL--LVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .++++.+.. +.+...+..  .+..+...|++++|.+.+++...
T Consensus       103 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          103 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999888765 445555533  34447788999999998887754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=3.1e-08  Score=78.36  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=39.3

Q ss_pred             ccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC-----CCCCCHHHHHHHHHHHhccC
Q 015673           37 SEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND-----PKITQEPYLCNLIRSYGQAG  111 (403)
Q Consensus        37 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~  111 (403)
                      ..|++++|.++++.+.. .  |.....++..+...+...|++++|...+++....     ..+.....+..+...+...|
T Consensus         4 ~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            45666666664433322 1  2234445555555566666666666655554420     00111123344555555555


Q ss_pred             CHHHHHHHHHHHH
Q 015673          112 MFDHAMRTFDQMD  124 (403)
Q Consensus       112 ~~~~A~~~~~~~~  124 (403)
                      ++++|...+++..
T Consensus        81 ~~~~A~~~~~~al   93 (203)
T 3gw4_A           81 NWDAARRCFLEER   93 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.80  E-value=1.1e-08  Score=85.63  Aligned_cols=195  Identities=11%  Similarity=0.042  Sum_probs=119.4

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      +...+..+...+...|++++|+..|+.+++..  |. +...|..+..++...|++++|...+++... ..+.+...+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l   78 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-VAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSVKAHFFL   78 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence            34567778888889999999999999998887  43 556677888889999999999999998874 455667778888


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS  183 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  183 (403)
                      ..++...|++++|+..|+...+.++. +...+...+....+..   .... +...... ..+.+......+...  ..|+
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~  150 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEER-RIHQESELHSYLTRL--IAAE  150 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHH
Confidence            88899999999999999887664311 0001111111111110   1111 1112111 333444443333322  2577


Q ss_pred             hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 015673          184 SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ-GNAEEAERLWSEMEK  231 (403)
Q Consensus       184 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~  231 (403)
                      +++|.+.++...+.. +.+......+...+.+. +.++++.++|..+.+
T Consensus       151 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          151 RERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            778877777766542 22333333333334443 556777777776654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.79  E-value=7.8e-09  Score=88.92  Aligned_cols=129  Identities=10%  Similarity=0.051  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS--------------VISFNALLFACTRSRLYDKVPILFDEIPKKYNL  164 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  164 (403)
                      .+..+...+.+.|++++|+..|++..+......              ..+|..+..+|.+.|++++|+..+++.++.  .
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~  226 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D  226 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            344455555555555555555555544332211              356666666666666666666666666553  2


Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015673          165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA-ERLWSEME  230 (403)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~  230 (403)
                      +.+...|..+..+|...|++++|...|+++.+. .+.+...+..+..++.+.|+++++ ...+..|.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335556666666666777777777777666665 223455666666666666666666 33445443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.79  E-value=2.9e-07  Score=65.28  Aligned_cols=112  Identities=13%  Similarity=0.007  Sum_probs=89.6

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            4556777888889999999999999988764 4467788888888999999999999999988765 5567888888999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE  386 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  386 (403)
                      +...|++++|.+.+++..+. .|+....|..+...
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~  115 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHh
Confidence            99999999999999998874 44445566655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.78  E-value=1.9e-06  Score=72.46  Aligned_cols=162  Identities=12%  Similarity=-0.023  Sum_probs=97.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-----HHHHHHHhhh-cCCChHHHHHHHHHHHHCCCC---CC--hhcH
Q 015673          207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDV-----AAYNVRITNT-YGGDPERLKELIDEMRDAGLK---PD--TISY  275 (403)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~---~~--~~~~  275 (403)
                      ...+..+...|++++|.+.+.+..+.......     ..+..+...+ ..|++++|...+++..+....   +.  ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            33445555666666666666555543221110     1111122222 556777777776666543111   11  3367


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHH---HCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCC----CCC-CHH
Q 015673          276 NFLMTCYCKNEMMDEAKKVYEGLE---ENGCSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMVH----KIP-DFN  343 (403)
Q Consensus       276 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~  343 (403)
                      +.+...|...|++++|...+++..   +.. +.+    ..++..+...|...|++++|+..+++.++..    ... -..
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            777888888888888888888776   221 111    1467777888888888888888888776432    111 156


Q ss_pred             HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015673          344 TVKLLVEGLVKKKKIKEA-KGVIRTIK  369 (403)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a-~~~~~~~~  369 (403)
                      +|..+..+|.+.|++++| ...+++..
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            777788888888888888 66677654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.77  E-value=2.3e-08  Score=83.69  Aligned_cols=97  Identities=7%  Similarity=-0.060  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHH
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLK  176 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  176 (403)
                      ...+..+...+...|++++|+..|+...+..+. +...|..+..++.+.|++++|...+++..+  ..+.+...+..+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ   80 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            344555666666777777777777776665432 566666666667777777777777776654  22334556666677


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 015673          177 SHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~  196 (403)
                      ++...|++++|...|++..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777766654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.77  E-value=3.1e-08  Score=74.00  Aligned_cols=91  Identities=7%  Similarity=-0.078  Sum_probs=38.4

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                      .+...+...|++++|...|+.+.. ..+.+...|..+..++...|++++|+..|+++....+. +...+..+..++...|
T Consensus        26 ~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g  103 (148)
T 2vgx_A           26 SLAFNQYQSGXYEDAHXVFQALCV-LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXG  103 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence            334444444444444444444432 22233333444444444444444444444444443321 3334444444444444


Q ss_pred             CcCcHHHHHHHch
Q 015673          147 LYDKVPILFDEIP  159 (403)
Q Consensus       147 ~~~~a~~~~~~~~  159 (403)
                      ++++|...|++..
T Consensus       104 ~~~~A~~~~~~al  116 (148)
T 2vgx_A          104 ELAEAESGLFLAQ  116 (148)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4444444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=2.6e-07  Score=66.29  Aligned_cols=96  Identities=18%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      .+..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|..+++++.+.  .+.+..++..+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~   87 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence            344455555555555555555555544332 23444555555555555555555555555432  122344455555555


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 015673          179 CDSGSSDKALELLNEMENK  197 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~  197 (403)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5555555555555555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.75  E-value=4.6e-06  Score=75.41  Aligned_cols=203  Identities=8%  Similarity=-0.027  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 015673          114 DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNE  193 (403)
Q Consensus       114 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  193 (403)
                      +.+..+|+++....+ .+...|...+..+.+.|+.+.|..+|++....   |.+...+..    |....+.++.   ++.
T Consensus       196 ~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~---~~~  264 (493)
T 2uy1_A          196 SRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAV---YGD  264 (493)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHH---HHH
T ss_pred             HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHH---HHH
Confidence            446678888877543 36778888888888999999999999999874   334333322    2222222222   222


Q ss_pred             HHhCC------------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHH--HHhhhcCCChHHHHHH
Q 015673          194 MENKG------------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNV--RITNTYGGDPERLKEL  259 (403)
Q Consensus       194 ~~~~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~a~~~  259 (403)
                      +.+.-            .......|...+..+.+.++.+.|..+|+.. +.. ..+...|..  .+.....++.+.|..+
T Consensus       265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence            22110            0112355777777777888999999999999 321 223333321  2222244579999999


Q ss_pred             HHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          260 IDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      |+...+.- +-+...+...+....+.|+.+.|..+|+.+.     .....|...+..-...|+.+.+.+++++..+
T Consensus       343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99988763 2234456667777778999999999999973     2567888888877888999999998888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.75  E-value=1.1e-07  Score=75.17  Aligned_cols=158  Identities=12%  Similarity=0.058  Sum_probs=102.1

Q ss_pred             HhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHhcCC
Q 015673           73 AKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDEL----GTP-RSVISFNALLFACTRSRL  147 (403)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~  147 (403)
                      ...|++++|.+.++.+.. ........+..+...+...|++++|...+++..+.    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            456888888885555442 22234556777888888889999998888887651    111 234566777777888888


Q ss_pred             cCcHHHHHHHchhh---CCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHhcC
Q 015673          148 YDKVPILFDEIPKK---YNLSP--DKISYGLLLKSHCDSGSSDKALELLNEMENK----GVE-VTTVTYTTVLNCLYKQG  217 (403)
Q Consensus       148 ~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~  217 (403)
                      +++|...+++..+.   .+..+  ....+..+...+...|++++|...+++..+.    +.. .-..++..+..++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            88888888776543   12111  2345677777888888888888888776532    111 11233566777788888


Q ss_pred             CHHHHHHHHHHHHH
Q 015673          218 NAEEAERLWSEMEK  231 (403)
Q Consensus       218 ~~~~a~~~~~~~~~  231 (403)
                      ++++|...+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888777654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.75  E-value=2.5e-07  Score=67.07  Aligned_cols=113  Identities=14%  Similarity=0.007  Sum_probs=80.6

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            4456667777777888888888888877653 3466677777778888888888888888877654 4556777777888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      +...|++++|...+++..+..| +....|..+...+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~  124 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAE  124 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHH
Confidence            8888888888888888776443 3344565555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.74  E-value=6.1e-08  Score=74.92  Aligned_cols=123  Identities=12%  Similarity=0.092  Sum_probs=73.0

Q ss_pred             hhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH-HhccC
Q 015673           33 SKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS-YGQAG  111 (403)
Q Consensus        33 ~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  111 (403)
                      ..+...|++++|+..|+...+..  |. +...+..+...+...|++++|...|++.... .+.+...+..+..+ +...|
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRAN--PQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQAS   93 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHC--CS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhccCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcC
Confidence            33456677777777777776666  33 4455666667777777777777777766532 23344555556666 55666


Q ss_pred             CH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673          112 MF--DHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK  160 (403)
Q Consensus       112 ~~--~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  160 (403)
                      ++  ++|+..|+.+.+..+. +...+..+...+...|++++|...|+++.+
T Consensus        94 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            66  7777777666665432 455566666666666666666666666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.73  E-value=2.3e-07  Score=65.21  Aligned_cols=103  Identities=11%  Similarity=-0.001  Sum_probs=85.9

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP--DFNTVKLL  348 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l  348 (403)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.  +...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            45567778888889999999999999988764 4567788888889999999999999999988765 44  67888889


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHhCCch
Q 015673          349 VEGLVKK-KKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       349 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..++... |++++|.+.+++..+..|++
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999 99999999999998765544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.73  E-value=4.2e-08  Score=73.31  Aligned_cols=99  Identities=12%  Similarity=0.007  Sum_probs=65.3

Q ss_pred             chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673           61 SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF  140 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  140 (403)
                      +...+..+...+.+.|++++|...|+++.. ..|.+...|..+..++...|++++|+..|++..+..+. +...|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            344555666666777777777777777663 34455666666777777777777777777777665543 5666667777


Q ss_pred             HHHhcCCcCcHHHHHHHchhh
Q 015673          141 ACTRSRLYDKVPILFDEIPKK  161 (403)
Q Consensus       141 ~~~~~~~~~~a~~~~~~~~~~  161 (403)
                      +|...|++++|...|++..+.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777776653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.72  E-value=3.8e-07  Score=66.90  Aligned_cols=100  Identities=9%  Similarity=-0.009  Sum_probs=84.9

Q ss_pred             CChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015673          270 PDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLV  349 (403)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (403)
                      .+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.++.. +.+...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            356678888888999999999999999988764 4567788888889999999999999999988866 56788888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh
Q 015673          350 EGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      .+|...|++++|...+++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999988763

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=7.9e-07  Score=66.05  Aligned_cols=114  Identities=12%  Similarity=-0.038  Sum_probs=94.0

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK  346 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (403)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..++...|++++|+..+++.++.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4566778888899999999999999999876  455    5778888889999999999999999988765 55788888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhC
Q 015673          347 LLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELG  388 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (403)
                      .+..++...|++++|...+++..+..| +....|..+.....
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~  144 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHh
Confidence            899999999999999999999988544 44557766665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.72  E-value=1.7e-07  Score=69.41  Aligned_cols=97  Identities=12%  Similarity=0.051  Sum_probs=76.3

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGL  352 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (403)
                      ..+..+...+.+.|++++|...|+.....+ +.+...|..+..++...|++++|+..|++.+... +.++..+..+..+|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            445556777788888888888888887764 4567778888888888888888888888888765 55667777888888


Q ss_pred             HhcCCHHHHHHHHHHHHHh
Q 015673          353 VKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~  371 (403)
                      ...|++++|.+.|++..+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            8888888888888888764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.70  E-value=2.2e-08  Score=79.03  Aligned_cols=88  Identities=14%  Similarity=-0.024  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 015673          133 ISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNC  212 (403)
Q Consensus       133 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  212 (403)
                      ..+..+..++...|++++|+..+++..+.  .+.+...+..+..+|...|++++|.+.|++..+. .+.+...+..+..+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~  165 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHH
Confidence            34444444444555555555555544432  1223444555555555555555555555555443 12234444444444


Q ss_pred             HHhcCCHHHHH
Q 015673          213 LYKQGNAEEAE  223 (403)
Q Consensus       213 ~~~~~~~~~a~  223 (403)
                      +...++.+++.
T Consensus       166 ~~~~~~~~~~~  176 (198)
T 2fbn_A          166 VNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.69  E-value=3.2e-07  Score=78.80  Aligned_cols=152  Identities=12%  Similarity=-0.027  Sum_probs=104.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-------------hHHHHHHHH
Q 015673          110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-------------KISYGLLLK  176 (403)
Q Consensus       110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~  176 (403)
                      .+++++|+..|+...+..+ -+...+..+...+.+.|++++|+..|++..+.....++             ...|..+..
T Consensus       126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3444445444444332221 25777888888888889999999988888764211110             477888888


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHH
Q 015673          177 SHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPER  255 (403)
Q Consensus       177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~  255 (403)
                      +|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+... .+...+..+...+ ..|+.++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999998888763 34677888888888889999999999988888632 2334444444444 6777777


Q ss_pred             H-HHHHHHHH
Q 015673          256 L-KELIDEMR  264 (403)
Q Consensus       256 a-~~~~~~~~  264 (403)
                      + ..+++.|.
T Consensus       283 a~~~~~~~~~  292 (336)
T 1p5q_A          283 REKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7 44555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.68  E-value=5.1e-05  Score=64.02  Aligned_cols=237  Identities=9%  Similarity=-0.013  Sum_probs=120.0

Q ss_pred             ccCCHH-HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC----------cCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673          109 QAGMFD-HAMRTFDQMDELGTPRSVISFNALLFACTRSRL----------YDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus       109 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      +.|.++ +|+.+++.+...++. +..+|+.--..+...+.          +++++.+++.+...  .+-+..+|+.-.-.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wl  117 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL  117 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            344433 566666666665432 34445443333332222          34444555555432  22344444444444


Q ss_pred             HHhcC--ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChH
Q 015673          178 HCDSG--SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGN-AEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPE  254 (403)
Q Consensus       178 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  254 (403)
                      +...+  .+++++.+++++.+.. +-|...|+.-..++...|. ++++++.+..+.+..+.                   
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-------------------  177 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-------------------  177 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-------------------
T ss_pred             HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-------------------
Confidence            44444  2455555555555442 2244444444444444444 34555555555444321                   


Q ss_pred             HHHHHHHHHHHCCCCCChhcHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015673          255 RLKELIDEMRDAGLKPDTISYNFLMTCYCKN--------------EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS  320 (403)
Q Consensus       255 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  320 (403)
                                      |...|+.....+...              +.++++++.+...+... +-|...|+-+-..+.+.
T Consensus       178 ----------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          178 ----------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             ----------------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred             ----------------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence                            333333333322222              34566777777766654 44555665443334333


Q ss_pred             -----------CChHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Q 015673          321 -----------GNFDKAYKVFKESVMVHKIPDFNTVKLLV---EGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEE  386 (403)
Q Consensus       321 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  386 (403)
                                 +.++++++.++++++.. +.+.-.+..++   ......|..+++...+.++.+ ..|.-...|..+...
T Consensus       241 ~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          241 SGRCELSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-VDPMRAAYLDDLRSK  318 (331)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH-HCGGGHHHHHHHHHH
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH-hCcchhhHHHHHHHH
Confidence                       34678888888888755 22322222222   122246778888889998886 666666678777654


Q ss_pred             h
Q 015673          387 L  387 (403)
Q Consensus       387 ~  387 (403)
                      +
T Consensus       319 ~  319 (331)
T 3dss_A          319 F  319 (331)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.66  E-value=6.4e-07  Score=68.13  Aligned_cols=98  Identities=12%  Similarity=-0.027  Sum_probs=66.0

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG  351 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (403)
                      ...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.++.. +.+...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3455566666677777777777777766653 3356666667777777777777777777776655 4456666777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHh
Q 015673          352 LVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~  371 (403)
                      |...|++++|...|++..+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            77777777777777776653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.64  E-value=2e-07  Score=69.03  Aligned_cols=23  Identities=13%  Similarity=0.324  Sum_probs=8.8

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHH
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMD  124 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~  124 (403)
                      .+..++.+.|++++|+..|+...
T Consensus        57 ~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A           57 GLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333333333333333333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.64  E-value=3.2e-07  Score=66.31  Aligned_cols=99  Identities=12%  Similarity=0.029  Sum_probs=70.6

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...+......+...|++++|+..|+++++..  |. +...|..+..++...|++++|...+++... ..+.+...+..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg   79 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PE-DARGYSNRAAALAKLMSFPEAIADCNKAIE-KDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHH
Confidence            3456667777777888888888888887776  43 456667777777777888888887777764 3344566677777


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCC
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .++...|++++|+..|++..+..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhC
Confidence            77777788888877777776643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.63  E-value=4.2e-07  Score=65.14  Aligned_cols=98  Identities=12%  Similarity=0.043  Sum_probs=81.7

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV  353 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (403)
                      .+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++.++.. +.+...+..+..+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45667778889999999999999988764 4577888888899999999999999999998876 567788888999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCC
Q 015673          354 KKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~  373 (403)
                      ..|++++|...+++..+..|
T Consensus        97 ~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC---
T ss_pred             HcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999886433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.62  E-value=1.4e-05  Score=67.48  Aligned_cols=119  Identities=8%  Similarity=-0.005  Sum_probs=52.9

Q ss_pred             ccCChH-HHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC----------cchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           37 SEFDPD-KALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR----------FSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        37 ~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      +.|.++ +|+++++.++..+  |. ...+|+.--..+...+.          ++++..+++.+.. ..|.+..+|+.-..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n--P~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~-~~PKny~aW~hR~w  116 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN--PD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPKSYGTWHHRCW  116 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC--TT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC--ch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence            344433 5666666666666  33 22333333333322222          3444444444442 23334444444333


Q ss_pred             HHhccC--CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-cCcHHHHHHHchh
Q 015673          106 SYGQAG--MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL-YDKVPILFDEIPK  160 (403)
Q Consensus       106 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~  160 (403)
                      ++.+.+  .+++++.+++.+.+.++. +..+|+.-...+...|. ++++++.++.+++
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~  173 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  173 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            333333  245555555555554433 44445444444444444 2445555555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.62  E-value=5.7e-07  Score=63.08  Aligned_cols=101  Identities=7%  Similarity=-0.091  Sum_probs=71.3

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC--CHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT--QEPYLC  101 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~  101 (403)
                      +...+..+...+...|++++|+..|+++.+..  |. +...+..+...+...|++++|...+++.... .+.  +...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~   80 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWA   80 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHH
Confidence            44566677777778888888888888887766  33 4455666777777778888888777777643 333  456667


Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHhCCC
Q 015673          102 NLIRSYGQA-GMFDHAMRTFDQMDELGT  128 (403)
Q Consensus       102 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~  128 (403)
                      .+..++... |++++|++.++.+.....
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            777777777 777888777777776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.61  E-value=4.1e-08  Score=77.50  Aligned_cols=63  Identities=11%  Similarity=-0.091  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      ..+..+..+|...|++++|+..+++..+. .+.+...+..+..+|...|++++|...|++..+.
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            44555666666666666666666666554 2234555666666666666666666666666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=3.2e-06  Score=75.39  Aligned_cols=202  Identities=9%  Similarity=-0.070  Sum_probs=138.8

Q ss_pred             HHHhhhhccCChHHHHHHHHHhhhccCCCCcc--------------hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCC
Q 015673           30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSS--------------RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKIT   95 (403)
Q Consensus        30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   95 (403)
                      ...+.+.+.|++++|++.|..+.+........              ..++..++..|...|++++|.+.+..+.......
T Consensus         9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~   88 (434)
T 4b4t_Q            9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF   88 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            35677889999999999999998876222111              1235678889999999999999988875421111


Q ss_pred             CHH-----HHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCC
Q 015673           96 QEP-----YLCNLIRSYGQAGMFDHAMRTFDQMDE----LGTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLS  165 (403)
Q Consensus        96 ~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  165 (403)
                      ...     +.+.+...+...|+++.|..+++....    .+..+ -..++..+...+...|++++|..+++++.......
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~  168 (434)
T 4b4t_Q           89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL  168 (434)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence            111     223344555567889999998887653    22222 25577888888999999999999988876532211


Q ss_pred             ----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          166 ----PDKISYGLLLKSHCDSGSSDKALELLNEMENK----GVEVT--TVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       166 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                          .....+..++..|...|++++|..++++....    +.++.  ...+..+...+...|++++|...|.+..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                12456888889999999999999998877542    11111  24456666677788899999888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.57  E-value=2.4e-06  Score=61.72  Aligned_cols=99  Identities=15%  Similarity=0.076  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA---TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD---FNTVKLL  348 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  348 (403)
                      +..+...+...|++++|...|+.+.+.. +.+.   ..+..+..++...|++++|+..|+++++.. +.+   ...+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence            4456677788899999999999888753 2223   467777888889999999999999888765 333   6777888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          349 VEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      ..++...|++++|...|+++.+..|.+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            889999999999999999988866544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.56  E-value=1.3e-06  Score=61.80  Aligned_cols=98  Identities=16%  Similarity=0.022  Sum_probs=63.8

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..++..+...|++++|+..|+.+....  |. +...+..+...+...|++++|...+++.... .+.+...+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~   80 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence            345566666777777777777777777665  33 3445566666677777777777777766532 3344555666667


Q ss_pred             HHhccCCHHHHHHHHHHHHhCC
Q 015673          106 SYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      ++...|++++|.+.|+...+.+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC
Confidence            7777777777777777766644

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.56  E-value=8.8e-07  Score=67.34  Aligned_cols=102  Identities=12%  Similarity=0.016  Sum_probs=80.1

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      +.+...+..+...+...|++++|++.|+++++..  |. +...|..+..++...|++++|+..|++... ..+.+...|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~   83 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PA-NPIYLSNRAAAYSASGQHEKAAEDAELATV-VDPKYSKAWS   83 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHH
Confidence            3445667778888888899999999999888887  43 556677888888888888888888888874 3445567777


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .+..++...|++++|+..|++..+..
T Consensus        84 ~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           84 RLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            88888888888888888888887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.55  E-value=1.2e-06  Score=63.36  Aligned_cols=96  Identities=9%  Similarity=0.046  Sum_probs=46.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC-CCCc----hHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN-LSPD----KISYGLL  174 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l  174 (403)
                      +..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|+..+++.++... ..++    ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            344555555555555555555555554332 344555555555555555555555555443200 0000    1234444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 015673          175 LKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      ..++...|++++|++.|++...
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555555555555555444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2e-06  Score=63.78  Aligned_cols=114  Identities=15%  Similarity=0.055  Sum_probs=83.8

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY   99 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (403)
                      +.+...+..+...+...|++++|++.|+.+.+..  |..  ....+..+...+...|++++|...+++.... .+.+...
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~  101 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKA  101 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHH
Confidence            3445667778888889999999999999998877  532  1566677788888888888888888887643 3445666


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALL  139 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll  139 (403)
                      +..+..++...|++++|...|++..+.... +...+..+.
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~  140 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence            777888888888888888888888775432 344444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.5e-05  Score=71.07  Aligned_cols=195  Identities=7%  Similarity=-0.063  Sum_probs=121.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCc----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cch
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVT----------------TVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVD-LDV  238 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~  238 (403)
                      +.+.+.|++++|++.|..+.+......                ...+..++..|...|++++|.+.+..+.+.-.. ++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            345566777777777766655421110                123566777888888888888887776543111 111


Q ss_pred             ---HHHHHHHhhh--cCCChHHHHHHHHHHHHC----CCCCC-hhcHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--C
Q 015673          239 ---AAYNVRITNT--YGGDPERLKELIDEMRDA----GLKPD-TISYNFLMTCYCKNEMMDEAKKVYEGLEEN--GC--S  304 (403)
Q Consensus       239 ---~~~~~ll~~~--~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~  304 (403)
                         ......+..+  ..|+++.+..+++.....    +..+. ..++..+...|...|++++|..+++++...  +.  .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence               1222333333  667888888888776432    22222 346677888888888998888888876532  11  1


Q ss_pred             C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          305 P-NATTFRTWIYHLCGSGNFDKAYKVFKESVMV--HKI-P-D--FNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       305 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      + ...++..++..|...|++++|..++++....  .+. | .  ...+..+...+...|++++|...+.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1 1346777788888889999888888876543  111 1 1  23455666677778888888887777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.52  E-value=2.5e-06  Score=61.58  Aligned_cols=100  Identities=17%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCC----HHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPD----FNTVK  346 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  346 (403)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.....  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            456667778888888888888888887764 45677788888888888888888888888776531  122    66777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          347 LLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      .+..++...|++++|.+.+++..+..+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            888888888899899888888877544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.51  E-value=2e-06  Score=62.16  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCC----HHHHH
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH--KIPD----FNTVK  346 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~  346 (403)
                      ..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++..  ..++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            356678888889999999999999988764 4567788888899999999999999998887642  1121    24677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 015673          347 LLVEGLVKKKKIKEAKGVIRTIKKKF  372 (403)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (403)
                      .+..++...|++++|++.|++..+..
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            78888889999999999999887643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.50  E-value=2.5e-06  Score=64.65  Aligned_cols=103  Identities=11%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             hcHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          273 ISYNFLMTCYCKNEMMDEAKKVYEGLEEN-------GC----------SPNATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      ..+......+.+.|++++|...|...+..       +-          +.+...|..+..++.+.|++++|+..++++++
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34556677777888888888888776653       00          22345777888888999999999999999888


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh
Q 015673          336 VHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNV  376 (403)
Q Consensus       336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  376 (403)
                      .+ +.+...|..+..+|...|++++|...|++..+..|.+.
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            76 66788888899999999999999999999887554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.48  E-value=1.8e-06  Score=63.22  Aligned_cols=98  Identities=7%  Similarity=-0.056  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHH
Q 015673           96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLL  175 (403)
Q Consensus        96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  175 (403)
                      +...+..+...+...|++++|+..|+......+. +...+..+..++...|++++|...+++..+.  .+.+...+..+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   84 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   84 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence            3445555666666666666666666666554432 4555566666666666666666666665542  223445556666


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 015673          176 KSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      .++...|++++|...|++..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            666666666666666665544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.47  E-value=2.2e-07  Score=83.78  Aligned_cols=126  Identities=8%  Similarity=-0.004  Sum_probs=101.4

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..+...+.+.|++++|++.|+++.+..  |. +..++..+..++.+.|++++|.+.+++... ..+.+...+..+..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~   82 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELN--PS-NAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKKYIKGYYRRAA   82 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence            345566778889999999999999999988  54 567788999999999999999999999985 35566778889999


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHhcCCcCcHHHHHH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA--CTRSRLYDKVPILFD  156 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~  156 (403)
                      +|...|++++|++.|++..+.... +...+..+..+  +.+.|++++|+..++
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999886543 44556656555  888899999999998

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.46  E-value=6.9e-07  Score=64.00  Aligned_cols=98  Identities=8%  Similarity=-0.100  Sum_probs=76.3

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+..+...+.+.|++++|+..|+.+++..  |. +...|..+..++...|++++|+..|++... ..+.+...+..+..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~   93 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PE-REEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAV   93 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence            345667778888889999999998888887  44 556677888888888888888888888874 34455667778888


Q ss_pred             HHhccCCHHHHHHHHHHHHhCC
Q 015673          106 SYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      ++...|++++|+..|++..+..
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           94 SHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            8888888888888888887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.43  E-value=4e-07  Score=64.81  Aligned_cols=87  Identities=5%  Similarity=-0.082  Sum_probs=42.8

Q ss_pred             cCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 015673           38 EFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAM  117 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  117 (403)
                      .|++++|+..|+++++.+...+.+..++..+..++...|++++|...|++... ..+.+...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            45555666666665554211112334445555555555555555555555543 22333444555555555555555555


Q ss_pred             HHHHHHHh
Q 015673          118 RTFDQMDE  125 (403)
Q Consensus       118 ~~~~~~~~  125 (403)
                      ..|++..+
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.43  E-value=1.3e-06  Score=63.12  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=48.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC-CCc----hHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNL-SPD----KISYGLL  174 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l  174 (403)
                      +..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..+.... .++    ..++..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            44455555555555555555555554332 24444555555555555555555555554432100 011    3445555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC
Q 015673          175 LKSHCDSGSSDKALELLNEMENK  197 (403)
Q Consensus       175 ~~~~~~~~~~~~a~~~~~~~~~~  197 (403)
                      ..++...|++++|.+.|+++.+.
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHh
Confidence            55555566666666666555553

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.43  E-value=2e-07  Score=83.73  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc--------------HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCC
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS--------------VISFNALLFACTRSRLYDKVPILFDEIPKKYNL  164 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  164 (403)
                      .+..+...+.+.|++++|+..|++..+......              ..+|..+..+|.+.|++++|+..+++.++.  .
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence            344455555555555555555555544322111              456666777777777777777777777653  2


Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 015673          165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAER-LWSEM  229 (403)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~  229 (403)
                      +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++++++.+ .+..|
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356667777777777777777777777777652 2355666677777777777666553 34444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.41  E-value=6e-06  Score=59.60  Aligned_cols=97  Identities=16%  Similarity=0.021  Sum_probs=68.9

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcc--hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCC---HHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSS--RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQ---EPYLCN  102 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~  102 (403)
                      +..+...+...|++++|++.|+.+.+..  |...  ...+..+..++...|++++|...|+.+... .+.+   ...+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~   81 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHH
Confidence            4456677778888888888888888776  4322  145667777888888888888888887643 2233   445666


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      +..++...|++++|...|+.+.+..
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            7778888888888888888877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.39  E-value=1.8e-06  Score=65.01  Aligned_cols=133  Identities=13%  Similarity=-0.019  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC----chH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-RS----VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP----DKI  169 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~  169 (403)
                      .+..+...+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...+++..+.....+    ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3455556666666666666666665432100 01    13455566666666666666666666543211011    134


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENK----GVE-VTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      .+..+...+...|++++|.+.+++..+.    +.. .....+..+..++...|++++|...+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5666677777778888887777776532    111 1234566677777778888888877777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.37  E-value=6.2e-07  Score=63.82  Aligned_cols=88  Identities=14%  Similarity=0.050  Sum_probs=61.8

Q ss_pred             cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015673          285 NEMMDEAKKVYEGLEENG--CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAK  362 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  362 (403)
                      .|++++|+..|++.++.+  -+.+...+..+..++...|++++|+..|+++++.. +.+..++..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            567777888888877653  12234567777778888888888888888887765 556777777888888888888888


Q ss_pred             HHHHHHHHhCC
Q 015673          363 GVIRTIKKKFP  373 (403)
Q Consensus       363 ~~~~~~~~~~~  373 (403)
                      ..+++..+..|
T Consensus        82 ~~~~~al~~~p   92 (117)
T 3k9i_A           82 ELLLKIIAETS   92 (117)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhCC
Confidence            88888776543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.30  E-value=8e-06  Score=73.30  Aligned_cols=152  Identities=9%  Similarity=-0.013  Sum_probs=95.5

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-------------hHHHHHHH
Q 015673          109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-------------KISYGLLL  175 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~  175 (403)
                      ..+++++|+..|+...+..+ -....+..+...+.+.|++++|+..|++.++.....++             ...|..+.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence            33445555544443332221 25677777778888888888888888887753211111             46777888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChH
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPE  254 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~  254 (403)
                      .+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+-..+ ..++.+
T Consensus       325 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          325 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888887763 346777778888888888888888888888775321 223333333344 556666


Q ss_pred             HHH-HHHHHH
Q 015673          255 RLK-ELIDEM  263 (403)
Q Consensus       255 ~a~-~~~~~~  263 (403)
                      ++. .++..|
T Consensus       403 ~a~~~~~~~~  412 (457)
T 1kt0_A          403 ERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            554 334444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.28  E-value=3e-06  Score=76.39  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=72.5

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+
T Consensus        18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5567777777777766653 2245667777777777777777777777777664 3456667777777777777777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 015673          329 VFKESVMVHKIPDFNTVKLLVEG--LVKKKKIKEAKGVIR  366 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  366 (403)
                      .++++++.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            777776654 3333444444444  666777777777766

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.24  E-value=9.9e-06  Score=59.94  Aligned_cols=97  Identities=12%  Similarity=-0.073  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhC------
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP------NA-----TTFRTWIYHLCGSGNFDKAYKVFKESVMV------  336 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------  336 (403)
                      .+......+.+.|++++|+..|++.++.....      +.     ..|..+..++.+.|++++|+..+++.++.      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34556667778888888888888877653110      22     38888888999999999999999998876      


Q ss_pred             -CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 015673          337 -HKIPDFNTV----KLLVEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       337 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                       + +.+...|    .....++...|++++|+..|++..+-
T Consensus        93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             4 4455677    88899999999999999999999873

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.24  E-value=3.2e-06  Score=63.60  Aligned_cols=98  Identities=16%  Similarity=0.034  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC---CCC-CchH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELG----TPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKY---NLS-PDKI  169 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~  169 (403)
                      .+..+...+...|++++|...++...+..    ..+ ....+..+...+...|++++|...+++..+..   +.+ ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            34455566666666666666666544321    000 13345555666666677777766666654321   111 1134


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      .+..+...+...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            566777788888888888888887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.23  E-value=9.5e-06  Score=70.48  Aligned_cols=96  Identities=9%  Similarity=-0.002  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCC---------------CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCC
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELG---------------TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYN  163 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  163 (403)
                      .+..+...+.+.|++++|+..|++..+.-               -+.+..+|..+..+|.+.|++++|+..+++.++.  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            36678888889999999999998887610               0012334444444444555555555555544431  


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015673          164 LSPDKISYGLLLKSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      .+.+...|..+..+|...|++++|.+.|+++.+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            122334444444455555555555555554444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.23  E-value=7.1e-06  Score=71.28  Aligned_cols=136  Identities=10%  Similarity=0.007  Sum_probs=67.0

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      +..+...+.+.|++++|+..|+++++..  +. . .          ....       .+... ...+.....|..+..+|
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~-~-~----------~~~~-------~~~~~-~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG-S-R----------AAAE-------DADGA-KLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-H-H----------HHSC-------HHHHG-GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc-C-c----------cccC-------hHHHH-HHHHHHHHHHHHHHHHH
Confidence            5556666777777777777777776522  10 0 0          0000       00000 01112233455555555


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  187 (403)
                      .+.|++++|+..++++.+.... +..++..+..+|...|++++|+..|++..+.  .+.+...+..+..++...++.+++
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666655554322 4555555555566666666666666555442  122344445555555555555444


Q ss_pred             H
Q 015673          188 L  188 (403)
Q Consensus       188 ~  188 (403)
                      .
T Consensus       361 ~  361 (370)
T 1ihg_A          361 E  361 (370)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.23  E-value=4.6e-06  Score=71.63  Aligned_cols=147  Identities=12%  Similarity=0.038  Sum_probs=78.2

Q ss_pred             hHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673           27 SVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRS  106 (403)
Q Consensus        27 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  106 (403)
                      .+..+...+.+.|++++|+..|++++...  |.  ...       +...++.+++...+.          ...|..+..+
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~--~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GD--DFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CH--HHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--cc--chh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            45566778888889999999998888776  42  111       112223333322221          1256778888


Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH-HHhcCChH
Q 015673          107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS-HCDSGSSD  185 (403)
Q Consensus       107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  185 (403)
                      |.+.|++++|+..|++..+.... +..+|..+..+|...|++++|...|++..+.  .+-+...+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888776542 6778888888888888888888888888642  12234445555444 23456677


Q ss_pred             HHHHHHHHHHhC
Q 015673          186 KALELLNEMENK  197 (403)
Q Consensus       186 ~a~~~~~~~~~~  197 (403)
                      .+.+.|..|...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            777888877654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.22  E-value=1e-05  Score=61.21  Aligned_cols=102  Identities=13%  Similarity=0.031  Sum_probs=67.4

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhcc------CCC---------CcchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHY------ASP---------VSSRYAQDLTVRRLAKSKRFSDIETLIESHK   89 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~------~~p---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   89 (403)
                      ...+...+..+.+.|++++|+..|+.++..-      ..|         +.....|..+..++.+.|++++|+..++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3467778899999999999999999998861      001         1123445566666666667766666666665


Q ss_pred             cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673           90 NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      . ..+.+...|..+..++...|++++|+..|+...+..
T Consensus        91 ~-~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           91 K-REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             H-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             h-cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            3 234455556666666666667777766666666543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.20  E-value=1.1e-06  Score=61.63  Aligned_cols=92  Identities=11%  Similarity=0.029  Sum_probs=58.5

Q ss_pred             hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC------HHHH
Q 015673          272 TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPD------FNTV  345 (403)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~  345 (403)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.++.. +.+      ...+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~   81 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence            4456666777777777777777777777653 4456667777777777777777777777777544 222      4445


Q ss_pred             HHHHHHHHhcCCHHHHHHHH
Q 015673          346 KLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~  365 (403)
                      ..+..++...|++++|...+
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHH
Confidence            55555555555555444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.19  E-value=9.9e-06  Score=69.54  Aligned_cols=152  Identities=16%  Similarity=0.038  Sum_probs=87.1

Q ss_pred             chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHH
Q 015673          202 TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTC  281 (403)
Q Consensus       202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  281 (403)
                      ....+..+...+.+.|++++|...|++....  .|+...+      ...++..++...+.          ...|..+..+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~------~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF------QLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH------TCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh------hhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            3556777888888999999999999998875  3443211      12333333332221          2367888999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 015673          282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEG-LVKKKKIKE  360 (403)
Q Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~  360 (403)
                      |.+.|++++|+..++..++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+... ....+..++
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998874 4577889999999999999999999999988654 3345555555555 334566778


Q ss_pred             HHHHHHHHHHhCC
Q 015673          361 AKGVIRTIKKKFP  373 (403)
Q Consensus       361 a~~~~~~~~~~~~  373 (403)
                      +...|+++.+..|
T Consensus       318 a~~~~~~~l~~~p  330 (338)
T 2if4_A          318 QKEMYKGIFKGKD  330 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHhhCCCC
Confidence            8888888876433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.17  E-value=7.5e-05  Score=68.65  Aligned_cols=179  Identities=9%  Similarity=-0.050  Sum_probs=136.3

Q ss_pred             hhccCC-hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC----------cchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           35 LRSEFD-PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR----------FSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        35 l~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      +.+.|+ .++|++.++.++..+  |. ...+|+.-..++...|+          ++++.+.++.+.. ..+.+..+|..-
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~n--P~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pK~y~aW~hR  113 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGAN--PD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPKSYGTWHHR  113 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHC--ch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence            334444 567899999999999  54 55667777777777777          8899999999884 556677788877


Q ss_pred             HHHHhccC--CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          104 IRSYGQAG--MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       104 ~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..++.+.+  +++++++.++++.+.++. +..+|+.-...+.+.| .++++++.++++++  ..+-|...|+.....+.+
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHh
Confidence            77788888  679999999999998765 8888988888888888 78889999999886  345577778777766655


Q ss_pred             c--------------CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673          181 S--------------GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       181 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  221 (403)
                      .              +.++++++.++++.... +-+...|..+...+.+.++.++
T Consensus       191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence            3              45688888888887763 3467778877777777666433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.15  E-value=0.00022  Score=65.56  Aligned_cols=136  Identities=7%  Similarity=-0.010  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHH
Q 015673          253 PERLKELIDEMRDAGLKPDTISYNFLMTCYCKNE--MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG-NFDKAYKV  329 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~  329 (403)
                      ++++.+.++.+.+.. +-+..+|+.-..++.+.+  ++++++..++++.+.+ +-|...|+.-...+.+.| ..+++++.
T Consensus        89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence            566777777776654 225666666666667777  6688888888888775 457777877777777777 78888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCCC
Q 015673          330 FKESVMVHKIPDFNTVKLLVEGLVKK--------------KKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVPA  392 (403)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  392 (403)
                      ++++++.+ +.+...|+.....+.+.              +.++++.+.+++... ..|+...+|..+...+...+.
T Consensus       167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~-~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF-TDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH-HCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh-hCCCCccHHHHHHHHHhcCCC
Confidence            88888766 56777777776666653              557889999988887 455667799988888776554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.12  E-value=0.00013  Score=53.26  Aligned_cols=111  Identities=10%  Similarity=-0.050  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHH
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG----SGNFDKAY  327 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~  327 (403)
                      ++++|...|++..+.| .|+  ..  |...|...+.+++|..+|++..+.|   +...+..+...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4555556666555554 222  12  4445555555556666666665543   44555555555555    55666666


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 015673          328 KVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~  373 (403)
                      ++|++..+.|   ++..+..|...|..    .+++++|.+.|++..+...
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            6666666543   34455555566655    5666666666666655433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.10  E-value=1.6e-05  Score=58.78  Aligned_cols=107  Identities=8%  Similarity=-0.080  Sum_probs=61.6

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ..+......+...|++++|+..|+++++..  |.....                ++..        ..+.+...|..+..
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~----------------~a~~--------~~~~~a~a~~n~g~   65 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE----------------EAFD--------HAGFDAFCHAGLAE   65 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT----------------SCCC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch----------------hhhh--------hccchHHHHHHHHH
Confidence            456677888889999999999999999988  431100                0000        00001124555555


Q ss_pred             HHhccCCHHHHHHHHHHHHhC-------CCCCcHHHH----HHHHHHHHhcCCcCcHHHHHHHch
Q 015673          106 SYGQAGMFDHAMRTFDQMDEL-------GTPRSVISF----NALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                      ++.+.|++++|+..+++.++.       .+. +...|    .....++...|++++|+..|++..
T Consensus        66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           66 ALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            555555555555555555553       321 34455    555666666666666666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.02  E-value=2e-05  Score=58.17  Aligned_cols=95  Identities=13%  Similarity=0.136  Sum_probs=52.5

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673          285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF----------DKAYKVFKESVMVHKIPDFNTVKLLVEGLVK  354 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (403)
                      .+.+++|...++...+.. +.+...|..+..++...+++          ++|+..|++.++.+ +.+..+|..+..+|..
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence            344555555555555543 33455555555555554443          36666666666554 4455666666666665


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCchhHHHHHH
Q 015673          355 KK-----------KIKEAKGVIRTIKKKFPPNVLRAWKK  382 (403)
Q Consensus       355 ~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~  382 (403)
                      .|           ++++|++.|++..+ ..|+....|..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~~~y~~a  130 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNTHYLKS  130 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHH-hCCCCHHHHHH
Confidence            53           67777777777666 33333334443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.02  E-value=5.1e-05  Score=53.41  Aligned_cols=78  Identities=14%  Similarity=0.012  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          291 AKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       291 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      |...|++..+.. +.+...+..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444332 2234444444444555555555555555544433 33344444445555555555555555554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.00  E-value=1.5e-05  Score=71.61  Aligned_cols=89  Identities=7%  Similarity=-0.033  Sum_probs=43.0

Q ss_pred             hhccCChHHHHHHHHHhhhccCC-----CCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc-------CCCCCCHHHHHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYAS-----PVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN-------DPKITQEPYLCN  102 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~  102 (403)
                      +..+|++++|+.++++.++....     .+....+++.++..|...|++++|..++++...       ...+.....++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44566666666666655442211     111333445555555556666655555554432       111112223455


Q ss_pred             HHHHHhccCCHHHHHHHHHHH
Q 015673          103 LIRSYGQAGMFDHAMRTFDQM  123 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~  123 (403)
                      |...|...|++++|+.++++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            555555555555555555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.97  E-value=9.7e-05  Score=49.18  Aligned_cols=61  Identities=11%  Similarity=0.127  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          309 TFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+..+...+...|++++|+..+++.++.. +.+...+..+..++...|++++|...+++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33344444444444444444444444432 23344444444444455555555555544444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=1.4e-05  Score=55.76  Aligned_cols=96  Identities=13%  Similarity=-0.001  Sum_probs=63.0

Q ss_pred             hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc------HHHH
Q 015673           62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS------VISF  135 (403)
Q Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~  135 (403)
                      ...+..+...+...|++++|...|++... ..+.+...+..+..++...|++++|+..|++..+..+. +      ...+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~   81 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT-AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence            34455666677777777777777777663 23445566677777777778888888888777765432 2      4455


Q ss_pred             HHHHHHHHhcCCcCcHHHHHHHch
Q 015673          136 NALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus       136 ~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                      ..+..++...|+++.|...++++.
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHhH
Confidence            666666777777777766665553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.96  E-value=3.2e-05  Score=54.49  Aligned_cols=63  Identities=10%  Similarity=0.034  Sum_probs=28.5

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673           96 QEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus        96 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                      +...+..+..++...|++++|+..|++..+..+. +...|..+..++...|++++|...|++..
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444444444445555555554444443321 33444444444444444444444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.93  E-value=0.00047  Score=50.31  Aligned_cols=109  Identities=11%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHH
Q 015673          218 NAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAK  292 (403)
Q Consensus       218 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~  292 (403)
                      ++++|+..|++..+.+ .++..    +-..+ ..+.+++|.+.|++..+.|   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4566666666666655 22222    22223 4455666777777766654   55566666667766    67777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCC
Q 015673          293 KVYEGLEENGCSPNATTFRTWIYHLCG----SGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  337 (403)
                      .+|++..+.|   +...+..+...|..    .++.++|.++|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            7777777654   45566666666766    677777877777777765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.85  E-value=5.6e-05  Score=67.88  Aligned_cols=125  Identities=7%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             HhccCCHHHHHHHHHHHHhC-----CC-CC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC----C-CCCc-hHHHHH
Q 015673          107 YGQAGMFDHAMRTFDQMDEL-----GT-PR-SVISFNALLFACTRSRLYDKVPILFDEIPKKY----N-LSPD-KISYGL  173 (403)
Q Consensus       107 ~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~  173 (403)
                      +...|++++|+.++++..+.     |. .| ...+++.|..+|...|++++|..++++.++..    | ..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44667777777777665432     11 01 23456666667777777777766666654321    1 1122 345666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhC-----CC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          174 LLKSHCDSGSSDKALELLNEMENK-----GV--EVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       174 l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      |...|...|++++|..++++..+.     |.  +....+...+..++...+.+++|..++..+.+
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777777666665421     21  11223334455555566666666666666654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.84  E-value=0.00018  Score=47.88  Aligned_cols=84  Identities=18%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015673          271 DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVE  350 (403)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (403)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            35677888899999999999999999998764 4567888899999999999999999999998865 556777777777


Q ss_pred             HHHhcC
Q 015673          351 GLVKKK  356 (403)
Q Consensus       351 ~~~~~g  356 (403)
                      ++.+.|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            776543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.80  E-value=5.2e-05  Score=51.91  Aligned_cols=62  Identities=13%  Similarity=-0.030  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673           97 EPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                      ...+..+..++...|++++|+..|+++.+.++. +...|..+..+|...|++++|...|++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334444444455555555555555554443322 33444444444555555555554444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.74  E-value=5.1e-05  Score=56.01  Aligned_cols=101  Identities=13%  Similarity=0.016  Sum_probs=70.1

Q ss_pred             hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcc----------hHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFS----------DIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      ...+.+.+++|++.++...+.+  |. +...|..+..++...++++          +|+..|++... -.|.....|..+
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~--P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-ldP~~~~A~~~L   86 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSN--PL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPKKDEAVWCI   86 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-hCcCcHHHHHHH
Confidence            3456678999999999999998  54 6677777888888887765          77777777764 344555666677


Q ss_pred             HHHHhccC-----------CHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673          104 IRSYGQAG-----------MFDHAMRTFDQMDELGTPRSVISFNALLF  140 (403)
Q Consensus       104 ~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  140 (403)
                      ..+|...|           ++++|++.|++..+..  |+...|...+.
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~  132 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            77776653           6777777777777643  55444444333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.71  E-value=0.00024  Score=48.45  Aligned_cols=62  Identities=15%  Similarity=-0.024  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      ...+..+..++...|++++|+..|+++++.. +.+...|..+..+|...|++++|.+.+++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444444455555555544444433 2333444444444555555555555444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.44  E-value=0.00089  Score=45.30  Aligned_cols=58  Identities=9%  Similarity=0.147  Sum_probs=30.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEENGCSPNAT-TFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      ...+...|++++|...++++.+.. +.+.. .+..+..++...|++++|+..|++.++..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            344455555566666555555442 22344 55555555555555555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.41  E-value=0.0098  Score=50.53  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=87.4

Q ss_pred             CCCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCCcC--cH---HHHHHHch
Q 015673           93 KITQEPYLCNLIRSYG--QA---GMFDHAMRTFDQMDELGTPRSVISFNALLFACTR---SRLYD--KV---PILFDEIP  159 (403)
Q Consensus        93 ~~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~--~a---~~~~~~~~  159 (403)
                      .+.+...|...+++..  ..   .+..+|+.+|++..+..+. ....|..+..+|..   .+...  ..   ...+....
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            3445555655554432  22   3357888888888886532 34455544444321   11111  00   11111111


Q ss_pred             hhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH
Q 015673          160 KKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVA  239 (403)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  239 (403)
                      .....+.+..+|..+...+...|++++|...++++...+  |+...|..+...+...|++++|...+++....  .|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence            111235567777777776777788888888888888864  67777777778888888888888888888776  45655


Q ss_pred             HHHHH
Q 015673          240 AYNVR  244 (403)
Q Consensus       240 ~~~~l  244 (403)
                      +|...
T Consensus       345 t~~~~  349 (372)
T 3ly7_A          345 TLYWI  349 (372)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            55443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.33  E-value=0.00035  Score=47.36  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             HHHHHHccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          313 WIYHLCGSGNFDKAYKVFKESVMVHKIPDFN-TVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      ....+...|++++|+..++++++.. +.+.. .+..+..+|...|++++|.+.|++..+..|
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3456677788888888888877655 44556 777777788888888888888888776444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.31  E-value=0.0025  Score=42.58  Aligned_cols=70  Identities=11%  Similarity=0.061  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          304 SPNATTFRTWIYHLCGSGN---FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      +.|...+..+..++...++   .++|..++++.++.+ +.++.....+...+.+.|++++|+..|+++.+..|+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566666667666654443   577888888877766 566777777777788888888888888887775544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.30  E-value=0.00061  Score=60.13  Aligned_cols=87  Identities=9%  Similarity=-0.060  Sum_probs=41.2

Q ss_pred             cCChHHHHHHHHHhhhcc-----CCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhc-------CCCCCCHHHHHHHHH
Q 015673           38 EFDPDKALDIYSSVSKHY-----ASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKN-------DPKITQEPYLCNLIR  105 (403)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~  105 (403)
                      .|++++|+.++++.++..     ...+....+++.++.+|...|++++|..++++...       ...+.....++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            455566666665554321     11111233445555555555665555555555432       111111223455555


Q ss_pred             HHhccCCHHHHHHHHHHHH
Q 015673          106 SYGQAGMFDHAMRTFDQMD  124 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~  124 (403)
                      .|...|++++|+.+|++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            5555555555555555543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.30  E-value=0.0073  Score=51.32  Aligned_cols=68  Identities=15%  Similarity=0.091  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          304 SPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      +.+..+|..+...+...|++++|...+++++..+  |+...|..+...+.-.|++++|.+.+++.....|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            4455566655555555566666666666666654  5555555566666666666666666666655333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.22  E-value=0.0034  Score=45.82  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 015673          287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVHKIP--DFNTVKLLVEGLVKKKKIKEA  361 (403)
Q Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a  361 (403)
                      ....+.+-|.+..+.| .++..+.-.+..++++++   ++++++.++++..+.+ .|  ....+..+.-+|.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            3455666777766666 478888888888899888   6668999999888765 34  456677788888999999999


Q ss_pred             HHHHHHHHHhCCch
Q 015673          362 KGVIRTIKKKFPPN  375 (403)
Q Consensus       362 ~~~~~~~~~~~~~~  375 (403)
                      .+.++.+.+..|.+
T Consensus        91 ~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           91 LKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCCC
Confidence            99999998855544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.12  E-value=0.0015  Score=57.80  Aligned_cols=59  Identities=7%  Similarity=-0.085  Sum_probs=25.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhC-----CC-CCc-HHHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDEL-----GT-PRS-VISFNALLFACTRSRLYDKVPILFDEI  158 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~  158 (403)
                      ++.|+..|...|++++|+.+++++.+.     |. .|+ ..+++.|...|...|++++|+.++++.
T Consensus       332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            344444444455555555444443321     10 011 223444444455555555555444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.11  E-value=0.012  Score=56.88  Aligned_cols=45  Identities=9%  Similarity=0.037  Sum_probs=23.8

Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      ...|+++.|.++.+.+.       +...|..+...+.+.++++.|.+.|.++
T Consensus       663 l~~~~~~~A~~~~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDES-------AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34455555555544331       3445555555555555555555555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.08  E-value=0.006  Score=41.73  Aligned_cols=62  Identities=13%  Similarity=0.021  Sum_probs=29.1

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          274 SYNFLMTCYCKNEMMDEAKKVYEGLEENG------CSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       274 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      -+..|...+.+.|++..|...|+...+.-      -.+...++..+..++.+.|+++.|+..++++.+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            34445555555555555555555544310      012233444444455555555555555544443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.02  E-value=0.0044  Score=54.70  Aligned_cols=92  Identities=7%  Similarity=-0.073  Sum_probs=61.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CC-CC-CHHH
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEENG---CSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMV-----HK-IP-DFNT  344 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~  344 (403)
                      +..+.+.|++++|..++++..+..   +.|+    ..+++.+..+|...|++++|+.++++++..     |- .| ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556678888888887776421   1222    346777777888888888888887776543     20 12 2345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          345 VKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            67778888888888888888887754

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.00  E-value=0.023  Score=39.94  Aligned_cols=141  Identities=14%  Similarity=0.018  Sum_probs=80.1

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      +...|..++..++..+.....     +..-++.++--....-+-+-..++++.+-....             ...+|+..
T Consensus        17 ~ildG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-------------is~C~NlK   78 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-------------LDKCQNLK   78 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-------------GGGCSCTH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhhhcC-------------cHhhhcHH
Confidence            344577777777777766655     233344455444455555555555555432111             11233444


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      .....+-.+-     .+.......+..+...|.-+...+++..+..  ..+|++...-.+..+|.+.|+..+|.+++.++
T Consensus        79 rVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           79 SVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             HHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            3333333332     2444555556666677777777777777544  45566677777777777777777777777777


Q ss_pred             HhCCCC
Q 015673          195 ENKGVE  200 (403)
Q Consensus       195 ~~~~~~  200 (403)
                      .+.|++
T Consensus       152 C~kG~k  157 (172)
T 1wy6_A          152 CKKGEK  157 (172)
T ss_dssp             HHTTCH
T ss_pred             HHhhhH
Confidence            777663

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.97  E-value=0.002  Score=56.87  Aligned_cols=87  Identities=7%  Similarity=-0.118  Sum_probs=63.3

Q ss_pred             hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CC-CC-CHHHHHHHH
Q 015673          284 KNEMMDEAKKVYEGLEEN---GCSPN----ATTFRTWIYHLCGSGNFDKAYKVFKESVMV-----HK-IP-DFNTVKLLV  349 (403)
Q Consensus       284 ~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~  349 (403)
                      ..|++++|..++++.++.   -+.|+    ..+++.+..+|...|++++|..++++.+..     |- .| ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357788888888876531   11222    347888888899999999998888887653     21 12 235678888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 015673          350 EGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.094  Score=39.29  Aligned_cols=101  Identities=12%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                      .....|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+...          +..+.-.|.-.|+.+
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence            344677777777776655      3666777777777777777777777777732          344555555567766


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      .-.++-+.....|-      ++....++...|+++++.++|.+
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            66555555544432      34445556667777777777754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.80  E-value=0.069  Score=43.57  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 015673          168 KISYGLLLKSHCDS-----GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQ-GNAEEAERLWSEMEKKGVD  235 (403)
Q Consensus       168 ~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~  235 (403)
                      -..|..+...|.+.     |+.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++.+.....
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            34556666666653     66666666666666543222345555555555553 6666666666666665444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.78  E-value=0.016  Score=38.54  Aligned_cols=21  Identities=5%  Similarity=-0.165  Sum_probs=7.9

Q ss_pred             HHHHHHhcCCcCcHHHHHHHc
Q 015673          138 LLFACTRSRLYDKVPILFDEI  158 (403)
Q Consensus       138 ll~~~~~~~~~~~a~~~~~~~  158 (403)
                      +...+.+.|++++|+..|+.+
T Consensus        49 lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A           49 IANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            333333333333333333333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.78  E-value=0.057  Score=52.11  Aligned_cols=99  Identities=10%  Similarity=0.103  Sum_probs=66.0

Q ss_pred             hccCCHHHHHH-HHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHH
Q 015673          108 GQAGMFDHAMR-TFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK  186 (403)
Q Consensus       108 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  186 (403)
                      ...+++++|.+ ++..+      ++......++..+.+.|..+.|.++.+.-.             .-.......|+++.
T Consensus       610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTL  670 (814)
T ss_dssp             HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHH
T ss_pred             HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHH
Confidence            45677888766 44221      112233666677777777777776553221             11233456799999


Q ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      |.++.+.+      .+...|..+...+.+.++++.|.+.|..+..
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            98886533      3668899999999999999999999988643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.63  E-value=0.028  Score=39.39  Aligned_cols=94  Identities=17%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 015673          280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDK---AYKVFKESVMVHKIP--DFNTVKLLVEGLVK  354 (403)
Q Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  354 (403)
                      ...........+.+-|.+....| .++..+--.+..++.++.+...   ++.+++++...+ .|  .......|.-++.+
T Consensus         9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk   86 (126)
T 1nzn_A            9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence            33333445566677777666656 4778887788889999887665   889999988765 23  44566678889999


Q ss_pred             cCCHHHHHHHHHHHHHhCCch
Q 015673          355 KKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .|++++|.+.++.+.+.-|.+
T Consensus        87 lg~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           87 LKEYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999855544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.63  E-value=0.029  Score=38.23  Aligned_cols=66  Identities=11%  Similarity=-0.027  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          167 DKISYGLLLKSHCDSGSSDKALELLNEMENKG------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      +...+..+...+.+.|+++.|...|+...+.-      -.+....+..+..++.+.|+++.|...++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44556667777777777777777777665431      1234556677777777777777777777777765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.47  E-value=0.054  Score=39.02  Aligned_cols=115  Identities=12%  Similarity=0.053  Sum_probs=79.0

Q ss_pred             cccchhHHHHHhhhhccCCh------HHHHHHHHHhhhccCCCCcchhhHHHHHH------HHHhcCCcchHHHHHHHhh
Q 015673           22 TASSISVSKAKSKLRSEFDP------DKALDIYSSVSKHYASPVSSRYAQDLTVR------RLAKSKRFSDIETLIESHK   89 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~------~~A~~~~~~~~~~~~~p~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~   89 (403)
                      |.+..+|...+..+-+.|++      ++.+++|+++...-  |+.....|...+.      .+...++.++|.++|+.+.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45667888888888888999      89999999998765  3221111111111      1234488999999999986


Q ss_pred             cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 015673           90 NDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLF  140 (403)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  140 (403)
                      .. ...-..+|......-.+.|+...|.+++......+.+| ...+...+.
T Consensus        88 ~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           88 AN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             HH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             HH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            54 33336677777888888999999999999999887764 334444333

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.14  E-value=1  Score=43.46  Aligned_cols=294  Identities=7%  Similarity=-0.029  Sum_probs=161.0

Q ss_pred             HHHhhhhccCChHHH-HH-HHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHH--HHHHH
Q 015673           30 KAKSKLRSEFDPDKA-LD-IYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYL--CNLIR  105 (403)
Q Consensus        30 ~l~~~l~~~~~~~~A-~~-~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~  105 (403)
                      ...+++...|-..+. +. ..+|+.+..  +  ....-....-.....|+.+++..++..........+...-  ..+.-
T Consensus       344 ~f~Naf~naG~~~D~~l~~~~~Wl~k~~--~--~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL  419 (963)
T 4ady_A          344 SVANGFMHAGTTDNSFIKANLPWLGKAQ--N--WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL  419 (963)
T ss_dssp             HHHHHHHTTTTCCCHHHHHCHHHHHHCC--T--HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchhhhcchhhhhccc--h--HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence            456666666654332 22 223444433  2  2222234445577889999999999888743212232222  22444


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHhcCCc-CcHHHHHHHchhhCCCCCch--HHHHHHH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGT-------PRSVISFNALLFACTRSRLY-DKVPILFDEIPKKYNLSPDK--ISYGLLL  175 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~--~~~~~l~  175 (403)
                      +....|..+++..++.......-       .+....-..+.-++.-.|.- +++...+..+.....  +..  ..-..+.
T Consensus       420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALG  497 (963)
T 4ady_A          420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMG  497 (963)
T ss_dssp             HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHh
Confidence            45556665678887776554221       11223333444444444433 356666666654311  111  1222344


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHh--hh-cC
Q 015673          176 KSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLN--CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRIT--NT-YG  250 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~-~~  250 (403)
                      ..++..|+.+....++..+.+. .  +..+...+..  ++...|+.+.+..+++.+... ..|....-..+..  +| ..
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~-~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT  573 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQET-Q--HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT  573 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred             hhhcccCCHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence            5566778888888888877664 2  2233333433  444678888888888888764 1233322222222  33 67


Q ss_pred             CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHH
Q 015673          251 GDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNF-DKAYKV  329 (403)
Q Consensus       251 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~  329 (403)
                      |+.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++..
T Consensus       574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~  651 (963)
T 4ady_A          574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV  651 (963)
T ss_dssp             CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence            88877777998888642 2233333344445556777777788887776654 44444333444444445443 678888


Q ss_pred             HHHHHh
Q 015673          330 FKESVM  335 (403)
Q Consensus       330 ~~~~~~  335 (403)
                      +..+..
T Consensus       652 L~~L~~  657 (963)
T 4ady_A          652 LDPLTK  657 (963)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            888864

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.13  E-value=0.00068  Score=59.06  Aligned_cols=246  Identities=11%  Similarity=0.066  Sum_probs=158.0

Q ss_pred             cchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHH
Q 015673           24 SSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNL  103 (403)
Q Consensus        24 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  103 (403)
                      .+..|..+..+....++..+|++.|-++   +     ++..|..++....+.|.+++-+..+....+....+.  +=+.|
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteL  122 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETEL  122 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC---S-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC---C-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHH
Confidence            3567888899999999999888876322   2     334567888999999999999999887765433333  33679


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhC-------------------CC
Q 015673          104 IRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKY-------------------NL  164 (403)
Q Consensus       104 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------~~  164 (403)
                      +.+|++.++..+-.++    ..   .|+......+..-|...|.++.|.-+|..+..-.                   .-
T Consensus       123 i~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK  195 (624)
T 3lvg_A          123 IFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK  195 (624)
T ss_dssp             HHHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred             HHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999886553322    22   2676677788888888888888888777663211                   01


Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 015673          165 SPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR  244 (403)
Q Consensus       165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  244 (403)
                      .-+..||..+-.+|...+.+..|.-.--.+.-.     ......++..|-..|.+++.+.+++..... -......|+-+
T Consensus       196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL  269 (624)
T 3lvg_A          196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL  269 (624)
T ss_dssp             CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred             cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence            235667888888888888877665443333221     112223555677788888888888776643 23456666666


Q ss_pred             HhhhcCCChHHHHHHHHHHHHC-CCCC------ChhcHHHHHHHHHhcCChHHHH
Q 015673          245 ITNTYGGDPERLKELIDEMRDA-GLKP------DTISYNFLMTCYCKNEMMDEAK  292 (403)
Q Consensus       245 l~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~  292 (403)
                      --.+..-.+++..+.++..-.+ +++-      ....|.-++-.|.+..+++.|.
T Consensus       270 aILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          270 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            6555555666655555543221 1110      2345666777777777777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.12  E-value=0.064  Score=39.09  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=13.7

Q ss_pred             chhhHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 015673          202 TTVTYTTVLNCLYKQG---NAEEAERLWSEMEKK  232 (403)
Q Consensus       202 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~  232 (403)
                      +..+...+..++++++   +.++++.+|+...+.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~   64 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK   64 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            4444444444444444   333444444444443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.29  Score=36.64  Aligned_cols=44  Identities=9%  Similarity=-0.049  Sum_probs=19.9

Q ss_pred             hcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 015673           74 KSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQM  123 (403)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  123 (403)
                      ..|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+.
T Consensus        17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            444444444444433      12334444444444444444444444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.00  E-value=0.15  Score=36.85  Aligned_cols=65  Identities=12%  Similarity=0.206  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh
Q 015673          182 GSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT  248 (403)
Q Consensus       182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  248 (403)
                      +++++|.++|+.+.+.+-.- ...|....+.-.+.|+.+.|.+++...+..+.. +...+...+..+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl  138 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL  138 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence            67777777777776553332 566666666667778888888888777776543 333344444443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.77  E-value=0.31  Score=34.41  Aligned_cols=66  Identities=26%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673          168 KISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV  234 (403)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  234 (403)
                      .......+......|.-+.-.+++..+... .+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus        91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            334455555566666666666666664332 345556666666666666666666666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.57  E-value=0.14  Score=41.88  Aligned_cols=108  Identities=15%  Similarity=0.200  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHCCCCCC---hhcHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCh
Q 015673          253 PERLKELIDEMRDAGLKPD---TISYNFLMTCYCKN-----EMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGS-GNF  323 (403)
Q Consensus       253 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~  323 (403)
                      ...|...+++..+.  .|+   ...|..|...|.+.     |+.++|.+.|++.++.+..-+..++..+.+.++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            35666777777765  444   45677888888874     89999999999988864222366777778888774 888


Q ss_pred             HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          324 DKAYKVFKESVMVHKI--PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       324 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      +++.+.+++.+.....  |+....+.        +.-++|..++.++..
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d  297 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD  297 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence            9999999988877644  54333222        223456666655543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.36  E-value=1.2  Score=38.43  Aligned_cols=236  Identities=12%  Similarity=0.036  Sum_probs=117.1

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCc--chhhHHHHHHHHHhc-CCcchHHHHHHHhhcCCCCCCHHHH--
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVS--SRYAQDLTVRRLAKS-KRFSDIETLIESHKNDPKITQEPYL--  100 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--  100 (403)
                      .....+...|.+.|+.++..+++......-.....  .......++..+... +..+.-.++..+..+........++  
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666788888889998888888777543311111  222234555555543 2233333333333211111111111  


Q ss_pred             ---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhC-CCCCchHHH
Q 015673          101 ---CNLIRSYGQAGMFDHAMRTFDQMDELGTPRS-----VISFNALLFACTRSRLYDKVPILFDEIPKKY-NLSPDKISY  171 (403)
Q Consensus       101 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~  171 (403)
                         ..++..|...|++.+|.+++..+.+.=.+.|     ...+..-+..|...+++.++...+....... .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               2477888888888888888877765211112     2334555666777788888877776664321 121232222


Q ss_pred             HH----HHHHHH-hcCChHHHHHHHHHHHhC----CCC--CchhhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCchH
Q 015673          172 GL----LLKSHC-DSGSSDKALELLNEMENK----GVE--VTTVTYTTVLNCLYKQGNAEEAERLWS-EMEKKGVDLDVA  239 (403)
Q Consensus       172 ~~----l~~~~~-~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~  239 (403)
                      ..    -...+. ..++|..|...|-+..+.    +.+  .+...|..+  +..-.++..+...++. .....-..|...
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~~~pei~  257 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITYSGRDID  257 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhccccccccCCccHH
Confidence            11    123344 677788777776655321    110  011122111  2222233323222221 111111245555


Q ss_pred             HHHHHHhhhcCCChHHHHHHHHHH
Q 015673          240 AYNVRITNTYGGDPERLKELIDEM  263 (403)
Q Consensus       240 ~~~~ll~~~~~~~~~~a~~~~~~~  263 (403)
                      .+..++.++..+++.....+++..
T Consensus       258 ~l~~L~~a~~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          258 AMKSVAEASHKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            566666666667776666666554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.85  E-value=4e-06  Score=72.53  Aligned_cols=262  Identities=8%  Similarity=0.004  Sum_probs=141.1

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015673           63 YAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFAC  142 (403)
Q Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  142 (403)
                      ..|..+..+....+++.+|++-|   .+..   ++..|..+|....+.|.+++-++.+...++..-  +...=+.|+.+|
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay  126 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL  126 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred             cHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence            44555666666666665555432   1112   222355566666666666666666555544321  333334556666


Q ss_pred             HhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015673          143 TRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEA  222 (403)
Q Consensus       143 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  222 (403)
                      ++.++..+..++        -..||..-...+..-|...|.++.|.-+|..+         .-|.-|..++.+.|++..|
T Consensus       127 Ak~~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~A  189 (624)
T 3lvg_A          127 AKTNRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA  189 (624)
T ss_dssp             HTSCSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSS
T ss_pred             HhhCcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHH
Confidence            666665443222        11244444455566666666666655544422         1223334445555666555


Q ss_pred             HHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015673          223 ERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      .+.-++      ..++.+|..+..+| ..+.+..|.-.--.+.-   .  ..-...++..|-..|.+++-+.+++.-...
T Consensus       190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---h--adeL~elv~~YE~~G~f~ELIsLlEaglgl  258 (624)
T 3lvg_A          190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H--ADELEELINYYQDRGYFEELITMLEAALGL  258 (624)
T ss_dssp             TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---C--SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred             HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---c--HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence            433222      24566777777777 66666655544433332   1  122334666777788888888888776643


Q ss_pred             CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          302 GCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTI  368 (403)
Q Consensus       302 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (403)
                      . ......|+-|.-.|++- +.++.++.++..-++   .+.   ..++++|.+..-|.++.-++...
T Consensus       259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iNi---pKviracE~ahLW~ElvfLY~~y  317 (624)
T 3lvg_A          259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VNI---PKVLRAAEQAHLWAELVFLYDKY  317 (624)
T ss_dssp             T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SCC---TTTHHHHTTTTCHHHHHHHHHHH
T ss_pred             C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---ccH---HHHHHHHHHHhhHHHHHHHHhcc
Confidence            2 45666777777777764 455555554432221   111   12677888888888887776654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.51  E-value=2.4  Score=37.52  Aligned_cols=49  Identities=4%  Similarity=0.074  Sum_probs=24.3

Q ss_pred             CCcchHHHHHHHhhc-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 015673           76 KRFSDIETLIESHKN-----DPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMD  124 (403)
Q Consensus        76 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  124 (403)
                      |+++.|.+.+..+.+     ............++..|...++++...+.+..+.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls   83 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS   83 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            455555555433321     1222333445556666666666666655554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.47  E-value=0.23  Score=46.87  Aligned_cols=128  Identities=12%  Similarity=0.080  Sum_probs=77.4

Q ss_pred             HHHHHHHhccCC-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-cCcHHHHHHHchhhC-----CCCCc-h----
Q 015673          101 CNLIRSYGQAGM-FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL-YDKVPILFDEIPKKY-----NLSPD-K----  168 (403)
Q Consensus       101 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~-----~~~~~-~----  168 (403)
                      ..++..+...++ .+.|+.+|+.+.+.++.-+......++..+...++ --+|.+++.+..+..     ..++. .    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            445666655666 57788888888775532222222233333333322 123455554443210     11111 1    


Q ss_pred             ------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          169 ------ISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       169 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                            .....-...+...|+++.|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                  11222245566789999999999998876 4556789999999999999999999888887

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.41  E-value=0.86  Score=43.02  Aligned_cols=129  Identities=17%  Similarity=0.181  Sum_probs=82.9

Q ss_pred             HHHHHhhhhccCC-hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC-cchHHHHHHHhhc-------CCCCCCH-
Q 015673           28 VSKAKSKLRSEFD-PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR-FSDIETLIESHKN-------DPKITQE-   97 (403)
Q Consensus        28 ~~~l~~~l~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-------~~~~~~~-   97 (403)
                      ...++..+...++ .+.|+.+|+++.+..  |.........++..+...++ --+|.+++.+...       .....+. 
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            3445555555666 588999999999887  54333322233333333321 2234444444321       1111111 


Q ss_pred             ---------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHch
Q 015673           98 ---------PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIP  159 (403)
Q Consensus        98 ---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  159 (403)
                               ..+..=...+...|+++-|+++-++.....+. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                     12233345567789999999999999886542 68899999999999999999999999885

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.30  E-value=2.9  Score=42.11  Aligned_cols=146  Identities=16%  Similarity=0.061  Sum_probs=71.7

Q ss_pred             HHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673           67 LTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                      .++..+...+..+.+.++...+.     .+...--.+..++...|++++|.+.|.+... |+..+..             
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~-------------  877 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTS-------------  877 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCC-------------
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccch-------------
Confidence            45555666677766666554432     1222223466677777788888777766532 1111100             


Q ss_pred             CcCcHHHHHHHchhhC-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hhhHHHHHHHHHhcCCHHH
Q 015673          147 LYDKVPILFDEIPKKY-NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVT----TVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       147 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~  221 (403)
                      ... ...-+..+.... ....-..-|..++..+.+.+.++.+.++-....+...+.+    ...|..+.+++...|++++
T Consensus       878 l~~-~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~  956 (1139)
T 4fhn_B          878 QFA-VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA  956 (1139)
T ss_dssp             SCS-SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred             hhh-hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence            000 000000110100 0011123456666666677777777666665554321111    1245666677777777777


Q ss_pred             HHHHHHHHHHc
Q 015673          222 AERLWSEMEKK  232 (403)
Q Consensus       222 a~~~~~~~~~~  232 (403)
                      |...+..+...
T Consensus       957 Ay~aL~~~pd~  967 (1139)
T 4fhn_B          957 AHVALMVLSTT  967 (1139)
T ss_dssp             GGHHHHHHHHS
T ss_pred             HHHHHHhCCCH
Confidence            76666655543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.26  E-value=0.22  Score=34.91  Aligned_cols=23  Identities=9%  Similarity=0.105  Sum_probs=10.9

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHh
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDE  125 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~  125 (403)
                      |.-++.+.|++++|.+.++.+.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            44444444444444444444444

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.84  E-value=4.1  Score=37.69  Aligned_cols=311  Identities=11%  Similarity=0.075  Sum_probs=153.1

Q ss_pred             hhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHH-HHHHHHHHhccCC
Q 015673           34 KLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPY-LCNLIRSYGQAGM  112 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~  112 (403)
                      ...+.|+++.+..+...+.. +  |...-..|..+...+ .....++....+...   +..|-... -...+..+.+.++
T Consensus        15 ~a~~~~~~~~~~~l~~~l~~-~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~~~~~   87 (618)
T 1qsa_A           15 QAWDNRQMDVVEQMMPGLKD-Y--PLYPYLEYRQITDDL-MNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELARRED   87 (618)
T ss_dssp             HHHHTTCHHHHHHHSGGGTT-S--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHhhcC-C--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHhCCC
Confidence            34456788777776555432 2  321222222222111 122344444444433   33333322 2446666777778


Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHH--HHHH
Q 015673          113 FDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDK--ALEL  190 (403)
Q Consensus       113 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~  190 (403)
                      +...+..+..     .+.+...-.....+....|+..+|......+-...  ......+..++..+.+.|....  ...=
T Consensus        88 w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~lt~~~~~~R  160 (618)
T 1qsa_A           88 WRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGKQDPLAYLER  160 (618)
T ss_dssp             HHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence            7776664443     12344444555666667777666666555554321  2234456667777666555433  2222


Q ss_pred             HHHHHhCC-----------CCCchhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHH---HhhhcCCChHH
Q 015673          191 LNEMENKG-----------VEVTTVTY-TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVR---ITNTYGGDPER  255 (403)
Q Consensus       191 ~~~~~~~~-----------~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~  255 (403)
                      ++.+...|           ++++.... ..++..+.   +...+.....   .  ..++...-..+   +..+...+.+.
T Consensus       161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar~d~~~  232 (618)
T 1qsa_A          161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAEN  232 (618)
T ss_dssp             HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHHHHHHHhcCHHH
Confidence            22222222           11111111 11111111   1111111111   1  12222221222   22224457888


Q ss_pred             HHHHHHHHHHCCCCCChhcHHH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015673          256 LKELIDEMRDAGLKPDTISYNF----LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFK  331 (403)
Q Consensus       256 a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (403)
                      |...+....... ..+......    +.......+...++...+......  ..+.....-.+....+.|+++.|...|+
T Consensus       233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~  309 (618)
T 1qsa_A          233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLA  309 (618)
T ss_dssp             HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888876543 223332222    222233344345666666665543  3444444444555557799999999998


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          332 ESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .|.... ........-+..++...|+.++|..+|+++.+
T Consensus       310 ~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          310 RLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             Hccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            876532 22344455567788888999999999988875

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.80  E-value=0.55  Score=34.60  Aligned_cols=65  Identities=8%  Similarity=-0.048  Sum_probs=46.5

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccC-CCC-----cchhhHHHHHHHHHhcCCcchHHHHHHHhh
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYA-SPV-----SSRYAQDLTVRRLAKSKRFSDIETLIESHK   89 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~p~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   89 (403)
                      .-.+..-+..+...|.++.|+-+.+.+....- .|.     .-..++..+++++...+++..|...|++..
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34566778899999999999988888654331 121     112245667888999999999999999853

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.79  E-value=2  Score=43.27  Aligned_cols=168  Identities=14%  Similarity=0.040  Sum_probs=87.5

Q ss_pred             HHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhc
Q 015673           30 KAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQ  109 (403)
Q Consensus        30 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (403)
                      .++..+...+.++-|.++..+...      ..... ..++.++...|++++|.+.|++... +........         
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~-yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~---------  879 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS------DPIAV-YLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF---------  879 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC------CHHHH-HHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC---------
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC------CcHHH-HHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh---------
Confidence            456667777888888776655432      12233 4678899999999999999998753 211111000         


Q ss_pred             cCCHHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC-c--hHHHHHHHHHHHhcCCh
Q 015673          110 AGMFDHAMRTFDQMDELG--TPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP-D--KISYGLLLKSHCDSGSS  184 (403)
Q Consensus       110 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~  184 (403)
                       .....    +..+....  ...-..-|..++..+-+.+.++.+.++-...++..+..+ +  ...|..+.+++...|++
T Consensus       880 -~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y  954 (1139)
T 4fhn_B          880 -AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF  954 (1139)
T ss_dssp             -SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred             -hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence             00000    01111100  011223455555556666666665555554443311111 1  12456666666666777


Q ss_pred             HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673          185 DKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       185 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  221 (403)
                      ++|...+-.+.....  -......++..+|..|..+.
T Consensus       955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence            776666666655433  23444555555555554443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.65  E-value=0.98  Score=29.93  Aligned_cols=54  Identities=13%  Similarity=0.150  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      +.=+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+..+.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~   78 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH   78 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            444677777777777888888888888888888888888888888887664433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.60  E-value=0.61  Score=40.45  Aligned_cols=73  Identities=10%  Similarity=-0.074  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTVKLL  348 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l  348 (403)
                      ...++..+...|+.++|...+..+.... +.+...|..++.++.+.|+..+|++.|+.+.+     .|+.|.+.+-...
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4456677778888888888888877654 56777888888888888888888888877644     3778877764433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.75  E-value=1.6  Score=30.76  Aligned_cols=72  Identities=14%  Similarity=0.079  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          304 SPNATTFRTWIYHLCGSGNF---DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .|+..+--.+..++.++.+.   .+++.+++++.+.+.......+..+.-++.+.|++++|.+..+.+.+.-|.+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            56666666667777776554   4677777777765521235566667778888888888888888887744333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.64  E-value=2.9  Score=36.22  Aligned_cols=73  Identities=10%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCchHHHHH
Q 015673          170 SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK-----KGVDLDVAAYNV  243 (403)
Q Consensus       170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  243 (403)
                      ....++..+...|+++++...+..+... .+.+...+..+|.++.+.|+..+|++.|+.+.+     .|+.|+..+-..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            3456677888899999999999888776 456888999999999999999999999988654     477887765433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.45  E-value=5.4  Score=35.24  Aligned_cols=94  Identities=16%  Similarity=0.120  Sum_probs=48.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCCC--HHH
Q 015673          276 NFLMTCYCKNEMMDEAKKVYEGLEE--NGCSPN---ATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKIPD--FNT  344 (403)
Q Consensus       276 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~  344 (403)
                      ..|...|...|++.+|..++..+..  .|....   ...+...++.|...+++..|..+++++...    ..+|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            3455566666666666666666542  121111   123444455666666666666666654321    11111  123


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          345 VKLLVEGLVKKKKIKEAKGVIRTIK  369 (403)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~  369 (403)
                      +...+..+...+++.+|...|.++.
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4445555666666666665555554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.36  E-value=2  Score=30.17  Aligned_cols=54  Identities=13%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      |.=+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-++.+..+.
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~  121 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH  121 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence            344566777777777888899988888999999999999999998888765433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.94  E-value=2.4  Score=28.13  Aligned_cols=50  Identities=12%  Similarity=0.086  Sum_probs=25.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhh
Q 015673          112 MFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKK  161 (403)
Q Consensus       112 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  161 (403)
                      +.=+..+-++.+...+..|++....+.+.+|.+.+++..|.++++.+..+
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            33344444445544455555555555555555555555555555555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.20  E-value=1.9  Score=30.79  Aligned_cols=67  Identities=15%  Similarity=0.021  Sum_probs=41.2

Q ss_pred             chhhHHHHHHHHHhcCC---cchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673           61 SRYAQDLTVRRLAKSKR---FSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus        61 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      +..+-....-+++++.+   ..+++.+++.+..............|.-++.+.|++++|.+..+.+.+..
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            33444445556666654   34577777777653332334444457777778888888888888887744

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.59  E-value=8.4  Score=32.28  Aligned_cols=168  Identities=12%  Similarity=0.019  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHH----HHHHhCCCCCcHHHHHHHH
Q 015673           64 AQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTF----DQMDELGTPRSVISFNALL  139 (403)
Q Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~ll  139 (403)
                      .|..+...|.+.+++++|++++-.-.               ..+.+.|+...|-++.    +-..+.++++|......|+
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~  101 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL  101 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            44556666778888888887755432               2233456655554433    4455567777777777777


Q ss_pred             HHHHhcCCcCc-HHHHHHHch----hhC-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 015673          140 FACTRSRLYDK-VPILFDEIP----KKY-NLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCL  213 (403)
Q Consensus       140 ~~~~~~~~~~~-a~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  213 (403)
                      ..+.....-+- =..+.+.++    +.. ...-|......+...|.+.+++.+|...|-    .|..++...|..++.-+
T Consensus       102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew  177 (336)
T 3lpz_A          102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW  177 (336)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence            66655443221 111222221    110 122355666777777777777777776662    13333335555554444


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHH
Q 015673          214 YKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMR  264 (403)
Q Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~  264 (403)
                      ...+...              .++......++..+..++...|..+++...
T Consensus       178 ~~~~~~~--------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          178 YKQDESH--------------TAPLYCARAVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHTSCGG--------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCCc--------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3333211              223334444454456777777777666554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.41  E-value=2.5  Score=31.15  Aligned_cols=31  Identities=19%  Similarity=0.180  Sum_probs=24.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          340 PDFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      .+.+.-..+..+|.+.|++++|+.+++.+..
T Consensus       120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             chHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            3445555688899999999999999988754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.39  E-value=3.1  Score=36.59  Aligned_cols=123  Identities=7%  Similarity=-0.060  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcC--CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 015673           41 PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKND--PKITQEPYLCNLIRSYGQAGMFDHAMR  118 (403)
Q Consensus        41 ~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~  118 (403)
                      .++-.+......+....-.....++..++..+.+.|+++.|.+.|.++...  +.......+...++.+...+++..+..
T Consensus       110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~  189 (429)
T 4b4t_R          110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE  189 (429)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            344444444444433111223345578899999999999999999998653  233334567778999999999999999


Q ss_pred             HHHHHHh---CCCCCcHHHHH--HHHHHHHhcCCcCcHHHHHHHchhhCC
Q 015673          119 TFDQMDE---LGTPRSVISFN--ALLFACTRSRLYDKVPILFDEIPKKYN  163 (403)
Q Consensus       119 ~~~~~~~---~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~  163 (403)
                      .+.++..   .+..|+...-.  .-...+...+++..|...|-+....+.
T Consensus       190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            9988753   23223322211  111224457889999888888766543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.32  E-value=8.4  Score=31.96  Aligned_cols=64  Identities=19%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             CCCCchHHHHHHHHHHHhcCChH-HHHHHHHHHH----hCC--CCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015673          163 NLSPDKISYGLLLKSHCDSGSSD-KALELLNEME----NKG--VEVTTVTYTTVLNCLYKQGNAEEAERLW  226 (403)
Q Consensus       163 ~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~  226 (403)
                      +.+++......++..+.....-+ .-.++++++.    +.|  ..-++.....+...|.+.|++.+|...|
T Consensus        87 ~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A           87 EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            55666655555555554432111 1223333332    111  1124445555555555555555555444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.72  E-value=4.9  Score=35.32  Aligned_cols=59  Identities=12%  Similarity=0.014  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015673          171 YGLLLKSHCDSGSSDKALELLNEMENKG--VEVTTVTYTTVLNCLYKQGNAEEAERLWSEM  229 (403)
Q Consensus       171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  229 (403)
                      ...+...|.+.|+++.|.+.|.++....  ...-...+-..++.+...+++..+...+.++
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3344455555555555555555554321  1112233444455555555555555555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=88.61  E-value=2.2  Score=30.08  Aligned_cols=24  Identities=25%  Similarity=0.115  Sum_probs=11.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEEN  301 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~~  301 (403)
                      |..++.+.|++++|.+..+.+.+.
T Consensus        84 LAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           84 LTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhh
Confidence            344444444444444444444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.34  E-value=20  Score=34.97  Aligned_cols=295  Identities=8%  Similarity=-0.020  Sum_probs=160.2

Q ss_pred             HHHHHHHHhcCCcchH-HHHHHHhhcCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 015673           66 DLTVRRLAKSKRFSDI-ETLIESHKNDPKITQEPYL-CNLIRSYGQAGMFDHAMRTFDQMDELG--TPRSVISFNALLFA  141 (403)
Q Consensus        66 ~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~  141 (403)
                      ..+..++...|--.+. .......... . .+..-+ ....-+....|+.++++.+++.....+  -.+....-..+.-+
T Consensus       343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k-~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG  420 (963)
T 4ady_A          343 VSVANGFMHAGTTDNSFIKANLPWLGK-A-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG  420 (963)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHCHHHHHH-C-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhcchhhhhc-c-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence            4567888888865443 2222222211 1 222222 334445667899999988888766421  11223333444445


Q ss_pred             HHhcCCcCcHHHHHHHchhhCCC------CCchHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCch--hhHHHHHH
Q 015673          142 CTRSRLYDKVPILFDEIPKKYNL------SPDKISYGLLLKSH--CDSGSSDKALELLNEMENKGVEVTT--VTYTTVLN  211 (403)
Q Consensus       142 ~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~  211 (403)
                      ....|..+++..++.........      .+....-..+.-+.  .-.++ +++.+.+..+....- +..  ..-.++..
T Consensus       421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGl  498 (963)
T 4ady_A          421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGL  498 (963)
T ss_dssp             HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence            56666666788777776554110      01122223333333  33444 455666666554321 111  11223344


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh---cCCChHHHHHHHHHHHHCCCCCChhcH--HHHHHHHHhcC
Q 015673          212 CLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT---YGGDPERLKELIDEMRDAGLKPDTISY--NFLMTCYCKNE  286 (403)
Q Consensus       212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~  286 (403)
                      .+.-.|+.+....++..+.+..   +......+..++   ..|+.+.+..+++.+.... .|....-  .++.-+|+..|
T Consensus       499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred             hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence            4556788888888888777642   222333233332   6789999999999887642 2332222  23445677888


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 015673          287 MMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKI-KEAKGVI  365 (403)
Q Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~  365 (403)
                      +.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..++
T Consensus       575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            9877777888887642 2233333333335556777777788887666544 45554444455555555554 5677788


Q ss_pred             HHHHH
Q 015673          366 RTIKK  370 (403)
Q Consensus       366 ~~~~~  370 (403)
                      ..+.+
T Consensus       653 ~~L~~  657 (963)
T 4ady_A          653 DPLTK  657 (963)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            77764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.29  E-value=5.5  Score=28.48  Aligned_cols=72  Identities=14%  Similarity=0.079  Sum_probs=53.4

Q ss_pred             CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          304 SPNATTFRTWIYHLCGSGNF---DKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .|+..+--.+..++.++.+.   .+++.+++++...+..........|.-++.+.|++++|.++.+.+.+.-|.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            56777777777788887654   4688888888775522345566677889999999999999999998854444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.19  E-value=10  Score=31.48  Aligned_cols=192  Identities=12%  Similarity=0.021  Sum_probs=109.8

Q ss_pred             ChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 015673           40 DPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRT  119 (403)
Q Consensus        40 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  119 (403)
                      ..++.+.-++.-++.|- .......|..+...|.+.+++++|++++..-.               ..+.+.|+...|-++
T Consensus        12 ~~~r~l~rl~~~I~~G~-yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DL   75 (312)
T 2wpv_A           12 KLAKTLQRFENKIKAGD-YYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDL   75 (312)
T ss_dssp             CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHH
Confidence            34455555555555441 11233344566667778888888888765532               223455776665553


Q ss_pred             ----HHHHHhCCCCCcHHHHHHHHHHHHhcCCcC-cHHHHHHHchh---hCC--CCCchHHHHHHHHHHHhcCChHHHHH
Q 015673          120 ----FDQMDELGTPRSVISFNALLFACTRSRLYD-KVPILFDEIPK---KYN--LSPDKISYGLLLKSHCDSGSSDKALE  189 (403)
Q Consensus       120 ----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~  189 (403)
                          ++...+.+.+++......++..+.....-+ .-.++++.+++   +.|  ..-++..+..+...|.+.|++.+|..
T Consensus        76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~  155 (312)
T 2wpv_A           76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER  155 (312)
T ss_dssp             HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence                455566678888888888887776643222 22334443331   111  22367788899999999999999888


Q ss_pred             HHHHHHhCCCCCchhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 015673          190 LLNEMENKGVEVTTVTYTTVLNCLYKQ---GNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRD  265 (403)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~  265 (403)
                      .|-.    |..-|...+..++.-+...   |...++              +......++..+..++...|..+++...+
T Consensus       156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            7742    1111345555555444443   333222              22233344444477888888888887653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.72  E-value=5.9  Score=31.90  Aligned_cols=57  Identities=16%  Similarity=0.247  Sum_probs=41.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 015673          280 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH  337 (403)
Q Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (403)
                      ....+.|.+++|+.....-++.. +-|...-..+++.+|-.|+++.|.+-++...+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~   61 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF   61 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            34556788888888777776664 5577777778888888888888888777766544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.46  E-value=13  Score=32.02  Aligned_cols=27  Identities=11%  Similarity=-0.012  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 015673           98 PYLCNLIRSYGQAGMFDHAMRTFDQMD  124 (403)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~A~~~~~~~~  124 (403)
                      .....|...|.+.|+.++..+++....
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~   46 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTR   46 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345567777777777777777776654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.38  E-value=5.9  Score=27.91  Aligned_cols=62  Identities=13%  Similarity=0.216  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI  314 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  314 (403)
                      |.-+..+-++.+...++.|++....+.+++|.+.+|+..|.++|+-+..+- .+...+|..++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence            344555666666667778888888888888888888888888888777432 23344565555

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.25  E-value=3  Score=37.26  Aligned_cols=66  Identities=12%  Similarity=0.002  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCch--HH-HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 015673          132 VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDK--IS-YGLLLKSHCDSGSSDKALELLNEMENK  197 (403)
Q Consensus       132 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~  197 (403)
                      ...+|.+++.|...+.++.|..+..+..--....+|.  .. +.-+...+.-.+++.+|.+.|......
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            5678899999999999999999999873100101121  12 233466677889999999999988765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.40  E-value=4.1  Score=32.78  Aligned_cols=56  Identities=13%  Similarity=0.053  Sum_probs=35.7

Q ss_pred             HHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673           71 RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus        71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .+.+.|+++++++....-.+ ..|.+...-..|+..+|-.|+++.|.+-++...+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR-~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~   61 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIK-ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF   61 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH-TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCHHHHHHHHHHHHH-hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            34566777777766666553 445555555567777777777777777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-05

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 32/257 (12%), Positives = 74/257 (28%), Gaps = 11/257 (4%)

Query: 88  HKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL 147
                       + + + +  +A       +          P   ++++ L         
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184

Query: 148 YDKVPILFDEIPKKYNLSPDKI-SYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTY 206
                  F++      L P+ + +Y  L     ++   D+A+       +         +
Sbjct: 185 IWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VH 240

Query: 207 TTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA 266
             +    Y+QG  + A   +    +       A  N+       G     ++  +     
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYE-GLEENGCSPNATTFRTWIYHLCGSGNFDK 325
                  S N L     +   ++EA ++Y   LE       A +    +      G   +
Sbjct: 301 C-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--QGKLQE 357

Query: 326 AYKVFKESVMVHKIPDF 342
           A   +KE++ +   P F
Sbjct: 358 ALMHYKEAIRIS--PTF 372

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.69
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.35
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.29
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.27
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.82
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.82
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.65
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.51
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.38
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.15
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.14
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.07
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.05
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.04
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.81
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.78
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.57
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.19
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.84
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.71
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.45
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.07
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.58
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.35
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.95

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-23  Score=183.35  Aligned_cols=348  Identities=11%  Similarity=0.029  Sum_probs=277.5

Q ss_pred             HHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhcc
Q 015673           31 AKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQA  110 (403)
Q Consensus        31 l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (403)
                      +...+.+.|++++|++.|+++.+..  |. +..++..++.++.+.|++++|...++++.. ..|.+...+..+..++.+.
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhhhh
Confidence            5567778999999999999999988  54 566778899999999999999999999875 3456677888999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcC----------------------------------cHHHHHH
Q 015673          111 GMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYD----------------------------------KVPILFD  156 (403)
Q Consensus       111 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----------------------------------~a~~~~~  156 (403)
                      |++++|+..+....+.... +..............+...                                  .+...+.
T Consensus        81 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence            9999999999998876543 3333333333333333222                                  3333333


Q ss_pred             HchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673          157 EIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL  236 (403)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (403)
                      ....  ..+.+...+..+...+...|+++.|...+++..+.. +-+...+..+..++...|++++|...+.+....... 
T Consensus       160 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-  235 (388)
T d1w3ba_         160 KAIE--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-  235 (388)
T ss_dssp             HHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred             Hhhc--cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-
Confidence            3332  123345677788889999999999999999988763 346778899999999999999999999999887533 


Q ss_pred             chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015673          237 DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY  315 (403)
Q Consensus       237 ~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  315 (403)
                      +...+..+...+ ..|++++|...|++..+.. +.+..++..+...+...|++++|...++...... +.+...+..+..
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  313 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence            344444444555 8999999999999998874 3356788899999999999999999999988764 667888999999


Q ss_pred             HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHHHhCCCC
Q 015673          316 HLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEEELGLVP  391 (403)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (403)
                      .+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|.+.|++..+ ..|+...+|..+...+...+
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999998765 56788899999999999999999999999987 56777778988888775544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-20  Score=162.17  Aligned_cols=323  Identities=12%  Similarity=-0.026  Sum_probs=258.7

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      .++..+..+...+...|++++|+..|+++++.+  |. ...++..++.++...|++++|...+........ ........
T Consensus        31 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~  106 (388)
T d1w3ba_          31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYIN  106 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHhhhhcccccccccccccccccc-cccccccc
Confidence            345678888999999999999999999999988  54 567788999999999999999999998875322 22222222


Q ss_pred             ----------------------------------HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCc
Q 015673          103 ----------------------------------LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLY  148 (403)
Q Consensus       103 ----------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  148 (403)
                                                        ........+....+...+.......+ -+...+..+...+...|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  185 (388)
T d1w3ba_         107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEI  185 (388)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcH
Confidence                                              22333344555555555555555432 2567788888889999999


Q ss_pred             CcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015673          149 DKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSE  228 (403)
Q Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  228 (403)
                      ++|...+++..+.  .+-+...+..+...+...|++++|...+++....+ +.+...+..+..++.+.|++++|...|++
T Consensus       186 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  262 (388)
T d1w3ba_         186 WLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999998764  23456788999999999999999999999998864 34677888899999999999999999999


Q ss_pred             HHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 015673          229 MEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNA  307 (403)
Q Consensus       229 ~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  307 (403)
                      ..+... .+...+..+...+ ..|++++|...++...... +.+...+..+...+...|++++|+..|++..+.. +.+.
T Consensus       263 al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~  339 (388)
T d1w3ba_         263 AIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA  339 (388)
T ss_dssp             HHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH
T ss_pred             HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            988642 2344555555566 8899999999999988764 5567788899999999999999999999998764 4467


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673          308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK  357 (403)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  357 (403)
                      .++..+..++...|++++|+..|+++++.. |.+..+|..+..+|.+.||
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            788999999999999999999999999765 5568899999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-14  Score=123.06  Aligned_cols=242  Identities=12%  Similarity=0.020  Sum_probs=128.8

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL  147 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  147 (403)
                      .+..+.+.|++++|...|+++.. ..|.+...|..+..++...|++++|+..|++..+..+. +...+..+...|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQ-QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            34445555666666666655553 23334445555555555556666666555555554332 44455555555555555


Q ss_pred             cCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 015673          148 YDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWS  227 (403)
Q Consensus       148 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  227 (403)
                      +++|.+.++.....   .|+............                   ...+.......+..+...+.+.++...+.
T Consensus       103 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         103 QRQACEILRDWLRY---TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             HHHHHHHHHHHHHT---STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHh---ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            55555555555432   111100000000000                   00000001111122334445666666666


Q ss_pred             HHHHcCCC-CchHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015673          228 EMEKKGVD-LDVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP  305 (403)
Q Consensus       228 ~~~~~~~~-~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  305 (403)
                      +..+.... .+...+..+-..+ ..|++++|...+++..... +-+...|..+..+|...|++++|...|++..+.. +-
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence            66554322 2233333333344 6677777777777766653 2245667777777778888888888888777653 33


Q ss_pred             CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 015673          306 NATTFRTWIYHLCGSGNFDKAYKVFKESVM  335 (403)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (403)
                      +...+..+..+|.+.|++++|++.|++.++
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566777777788888888888888877765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.1e-15  Score=124.43  Aligned_cols=275  Identities=11%  Similarity=-0.042  Sum_probs=169.0

Q ss_pred             hhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHH
Q 015673           26 ISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIR  105 (403)
Q Consensus        26 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  105 (403)
                      ......+..+.+.|++++|+..|+.+++.+  |. +..+|..++.++...|++++|...|++... ..|.+...+..++.
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~   95 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PK-HMEAWQYLGTTQAENEQELLAISALRRCLE-LKPDNQTALMALAV   95 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhc-cccccccccccccc
Confidence            334467788899999999999999999988  54 567788899999999999999999999875 34566778888999


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChH
Q 015673          106 SYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSD  185 (403)
Q Consensus       106 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  185 (403)
                      ++...|++++|.+.++.+....  |+.............                    ..+.......+..+...+.+.
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~  153 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFL  153 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHH
T ss_pred             cccccccccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHH
Confidence            9999999999999999988754  221110000000000                    000001111111222334455


Q ss_pred             HHHHHHHHHHhCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHH
Q 015673          186 KALELLNEMENKG-VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEM  263 (403)
Q Consensus       186 ~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~  263 (403)
                      +|...+.+..+.. ...+..++..+...+...|++++|+..+++....... +...+..+-..+ ..|++++|.+.|++.
T Consensus       154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHH
Confidence            5666665554432 1223455556666666666666666666666654321 233333333334 666666666666666


Q ss_pred             HHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          264 RDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEEN----------GCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      .+.. +-+..++..+..+|.+.|++++|+..|++.++.          ........|..+-.++...++.+.+..
T Consensus       233 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         233 LELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            6542 224555666777777777777777777765531          112334456666666666666655443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-10  Score=97.45  Aligned_cols=131  Identities=6%  Similarity=-0.068  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-CcCcHHHHHHHchhhCCCCCchHHHHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSR-LYDKVPILFDEIPKKYNLSPDKISYGLLLKS  177 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  177 (403)
                      .++.+...+.+.+.+++|+.+++.+++..+. +..+|+....++...| ++++|+..++...+.  .+-+..+|+.+...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHH
Confidence            4566777778888899999999999887654 6778888888877766 478899998888763  34467788888888


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          178 HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      +.+.|++++|+..++++.+. -+.+...|..+..++...|++++|++.++++++.+
T Consensus       122 ~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence            88899999999999988886 34477888888888888899999988888888864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.4e-10  Score=95.37  Aligned_cols=194  Identities=6%  Similarity=0.009  Sum_probs=98.5

Q ss_pred             HHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCC-cchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           29 SKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKR-FSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        29 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      ..+...+.+.+.+++|+++++.+++.+  |. ...+|+....++...|+ +++|...++.+.. ..+.+..+|..+..++
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~-~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAIELN--AA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHC--CC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHhhhhHHHHHhHHH
Confidence            344445555666666666666666666  33 33445555555555443 5666666665542 3344455555555566


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCC----
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGS----  183 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  183 (403)
                      .+.|++++|+..++.+.+..+. +..+|..+...+...|++++|+..++++++.  -+.+...|+.+...+.+.+.    
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence            6666666666666666554433 4555666666666666666666666665542  22244445544444444333    


Q ss_pred             --hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          184 --SDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       184 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                        +++|++.+.++.+.. +.+...|..+...+.. ...+++.+.++...+
T Consensus       200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence              344555555444431 2234444444333322 223444444444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.1e-10  Score=94.51  Aligned_cols=191  Identities=9%  Similarity=-0.005  Sum_probs=139.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      ..++|..+|++..+...+.+...|...+..+...|+++.|..+|+++++.........|...+... ..|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            456778888888765444456677777788888888888888888888764333344566666666 7788888888888


Q ss_pred             HHHHCCCCCChhcHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CC
Q 015673          262 EMRDAGLKPDTISYNFLMTC-YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVH-KI  339 (403)
Q Consensus       262 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~  339 (403)
                      .+.+.+. .+...|...+.. +...|+.+.|..+|+.+.+.. +.+...|...+..+...|++++|..+|++.+... ..
T Consensus       159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            8877642 233334333332 334678899999999988763 5567788888999999999999999999988764 23


Q ss_pred             CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          340 PD--FNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       340 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      |.  ...|...+..-...|+.+.+..+.+++.+.++.+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            32  4577778887788899999999999988766544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=7.9e-10  Score=93.83  Aligned_cols=295  Identities=11%  Similarity=0.037  Sum_probs=159.0

Q ss_pred             HHHHHHhcCCcchHHHHHHHhhcCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C----cHHHHHHH
Q 015673           68 TVRRLAKSKRFSDIETLIESHKNDPKITQE----PYLCNLIRSYGQAGMFDHAMRTFDQMDELGTP-R----SVISFNAL  138 (403)
Q Consensus        68 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l  138 (403)
                      ....+...|++++|.+++++........+.    ..+..+..++...|++++|+..|+...+.... +    ....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            344455555666666555555432211111    12344555566666666666666655432100 0    12233444


Q ss_pred             HHHHHhcCCcCcHHHHHHHchhh---CCCC--C-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCchhhHHH
Q 015673          139 LFACTRSRLYDKVPILFDEIPKK---YNLS--P-DKISYGLLLKSHCDSGSSDKALELLNEMENKG----VEVTTVTYTT  208 (403)
Q Consensus       139 l~~~~~~~~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~  208 (403)
                      ...+...|++..+...+......   ....  + ....+..+...+...|+++.+...+.......    .......+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            45556666666666655554321   0111  1 12344556667777777777777777665431    2222344455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC--CC--Cc--hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCC---hhcHHHH
Q 015673          209 VLNCLYKQGNAEEAERLWSEMEKKG--VD--LD--VAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPD---TISYNFL  278 (403)
Q Consensus       209 ll~~~~~~~~~~~a~~~~~~~~~~~--~~--~~--~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  278 (403)
                      ....+...+++..+...+.......  ..  +.  ...+......+ ..|+++.|...++.........+   ...+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            5566667777777777766554321  11  11  11122222233 67788888877776654422212   2344556


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCC----CCHHHH
Q 015673          279 MTCYCKNEMMDEAKKVYEGLEE----NGCSPN-ATTFRTWIYHLCGSGNFDKAYKVFKESVMV----HKI----PDFNTV  345 (403)
Q Consensus       279 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~  345 (403)
                      ..++...|++++|...++....    .+..|+ ...+..+...|...|++++|.+.+++.++.    |..    .....+
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~  337 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM  337 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence            7788888888888888887652    233333 345667777888888888888888876543    211    112334


Q ss_pred             HHHHHHHHhcCCHHHHH
Q 015673          346 KLLVEGLVKKKKIKEAK  362 (403)
Q Consensus       346 ~~l~~~~~~~g~~~~a~  362 (403)
                      ..++..+...++.+++.
T Consensus       338 ~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         338 AQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHhcCCChHHH
Confidence            44555566666655554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.1e-09  Score=93.03  Aligned_cols=271  Identities=12%  Similarity=-0.025  Sum_probs=192.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc----hHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRS----VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD----KISY  171 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~  171 (403)
                      .......+...|++++|++++++..+.....+    ..++..+..++...|++++|...|++..+.....++    ...+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            33456777899999999999999887543222    346777888899999999999999987653111112    3456


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----hHH
Q 015673          172 GLLLKSHCDSGSSDKALELLNEMENK----GVEV---TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLD----VAA  240 (403)
Q Consensus       172 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~  240 (403)
                      ..+...+...|++..+...+......    +...   ....+..+...+...|+++.+...+...........    ...
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            67778889999999999999876532    1111   123556677889999999999999988876532211    222


Q ss_pred             HHHHHhhh-cCCChHHHHHHHHHHHHCC--CCCC----hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 015673          241 YNVRITNT-YGGDPERLKELIDEMRDAG--LKPD----TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSP---NATTF  310 (403)
Q Consensus       241 ~~~ll~~~-~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~  310 (403)
                      +......+ ..++...+...+.......  ....    ...+..+...+...|++++|...+..........   ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            23333333 7788888888887765421  1111    2345566777889999999999999877543222   23456


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          311 RTWIYHLCGSGNFDKAYKVFKESVMV----HKIP-DFNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                      ..+..++...|++++|...+++++..    +..| ...++..+..+|.+.|++++|.+.+++..+
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66788999999999999999987643    3333 345778888999999999999999998765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.8e-10  Score=94.82  Aligned_cols=219  Identities=6%  Similarity=-0.008  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHh--------------cCCcchHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 015673           41 PDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAK--------------SKRFSDIETLIESHKNDPKITQEPYLCNLIRS  106 (403)
Q Consensus        41 ~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  106 (403)
                      .+++..+|++++...  |. ....|...+..+..              .+..++|..+|++......+.+...|..++..
T Consensus        32 ~~Rv~~vyerAl~~~--~~-~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~  108 (308)
T d2onda1          32 TKRVMFAYEQCLLVL--GH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHHHH--TT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            455667777777766  32 33444333333222              12335566666666543344444555556666


Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHH-HHhcCChH
Q 015673          107 YGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKS-HCDSGSSD  185 (403)
Q Consensus       107 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  185 (403)
                      ..+.|+++.|..+|+.+.+.........|...+..+.+.|+++.|..+|..+.+.  .+.+...|...... +...|+.+
T Consensus       109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHH
Confidence            6666666666666666665443322345666666666666666666666666542  22223333322222 22345666


Q ss_pred             HHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc--hHHHHHHHhhh-cCCChHHHHHHHH
Q 015673          186 KALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG-VDLD--VAAYNVRITNT-YGGDPERLKELID  261 (403)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~-~~~~~~~a~~~~~  261 (403)
                      .|.++|+.+.+. .+.+...|...+..+...|+++.|..+|++..+.. ..|+  ...|...+..- ..|+.+.+.++++
T Consensus       187 ~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~  265 (308)
T d2onda1         187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666666554 33345556666666666666666666666655542 1221  12333333333 4455555555555


Q ss_pred             HHHH
Q 015673          262 EMRD  265 (403)
Q Consensus       262 ~~~~  265 (403)
                      ++.+
T Consensus       266 r~~~  269 (308)
T d2onda1         266 RRFT  269 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=6.8e-12  Score=106.22  Aligned_cols=103  Identities=13%  Similarity=-0.041  Sum_probs=63.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015673          282 YCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEA  361 (403)
Q Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (403)
                      +...+..+++...+....... +++...+..+...+...|+.++|...+.+..... +.+..++..+..++...|++++|
T Consensus       218 ~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA  295 (334)
T d1dcea1         218 AFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKET  295 (334)
T ss_dssp             HHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHH
Confidence            344455566666666665543 3344445555556666677777777777766544 33456666677777777777777


Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHh
Q 015673          362 KGVIRTIKKKFPPNVLRAWKKVEEEL  387 (403)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~l~~~~  387 (403)
                      .+.+++..+ ..|+....|..|...+
T Consensus       296 ~~~~~~ai~-ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         296 LQYFSTLKA-VDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHHHHHH-HCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HCcccHHHHHHHHHHH
Confidence            777777766 4555555666665443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=7.7e-11  Score=95.66  Aligned_cols=128  Identities=16%  Similarity=0.007  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      ++..+..+|.+.|++++|+..|++..+..+. +..+|+.+..++.+.|++++|+..|+++.+.  .+-+..++..+..++
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence            3445566666666666666666666655433 4556666666666666666666666666542  222344556666666


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEME  230 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  230 (403)
                      ...|++++|.+.|+...+.. +.+......+..++.+.+..+....+.....
T Consensus       116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            66666666666666665542 2233333333333444444444433333333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.9e-11  Score=103.43  Aligned_cols=233  Identities=7%  Similarity=-0.060  Sum_probs=144.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--cCcHHHHHHHchhhCCCCCchHHHH-HHHHHHHhcCChHH
Q 015673          110 AGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL--YDKVPILFDEIPKKYNLSPDKISYG-LLLKSHCDSGSSDK  186 (403)
Q Consensus       110 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~  186 (403)
                      .|++++|+..++.+.+..++ +...|..+..++...+.  ++++...++.+.+.  .+++...+. .....+...+.++.
T Consensus        86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccccHH
Confidence            34466677777776665433 55566666655555443  55677777776653  223344433 33455566677777


Q ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHC
Q 015673          187 ALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDA  266 (403)
Q Consensus       187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~  266 (403)
                      |+..++.+.+.+ +-+...|..+..++...|++++|...+....+.  .|..  ..........+..+.+...+......
T Consensus       163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE--LELVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH--HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH--HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            777777776653 235666777777777777776665544433332  1111  11111112334455566667766665


Q ss_pred             CCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 015673          267 GLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVK  346 (403)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (403)
                      . +++...+..+...+...++.++|...+.+..+.. +.+...+..+..++...|++++|++.++++++.+ |.+...|.
T Consensus       238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~  314 (334)
T d1dcea1         238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLD  314 (334)
T ss_dssp             C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred             C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHH
Confidence            3 3455566667777888889999999998888663 3345677788889999999999999999998765 33455666


Q ss_pred             HHHHHHH
Q 015673          347 LLVEGLV  353 (403)
Q Consensus       347 ~l~~~~~  353 (403)
                      .+...+.
T Consensus       315 ~L~~~~~  321 (334)
T d1dcea1         315 DLRSKFL  321 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5655554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.5e-11  Score=97.77  Aligned_cols=99  Identities=11%  Similarity=-0.147  Sum_probs=62.7

Q ss_pred             chhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHH
Q 015673           25 SISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLI  104 (403)
Q Consensus        25 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  104 (403)
                      ...+..++..+.+.|++++|++.|+++++.+  |. +..+|..+..++...|++++|+..|+++.. ..+.+...+..+.
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg  112 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIR--PD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHH-HHhhhhhhHHHHH
Confidence            3455556666666777777777777776666  33 445566666667777777777777766654 2333444556666


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCC
Q 015673          105 RSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .++...|++++|+..|+...+..
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhc
Confidence            66666777777777776666544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.4e-08  Score=69.47  Aligned_cols=105  Identities=14%  Similarity=0.030  Sum_probs=88.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015673          278 LMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKK  357 (403)
Q Consensus       278 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  357 (403)
                      -...+.+.|++++|+..|.+.++.. +.+...|..+..++...|++++|+..+.+.++.+ +.++..|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            4567788899999999999998875 5677889999999999999999999999999877 7788899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          358 IKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       358 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      +++|+..+++..+ ..|+....+..+.+
T Consensus        87 ~~~A~~~~~~a~~-~~p~~~~~~~~l~~  113 (117)
T d1elwa_          87 FEEAKRTYEEGLK-HEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHHHT-TCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence            9999999999987 45555666666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.9e-08  Score=73.29  Aligned_cols=123  Identities=10%  Similarity=-0.028  Sum_probs=56.6

Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKA  187 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  187 (403)
                      ...|+++.|++.|+.+.    +|+..+|..+..++...|++++|+..|++.++.  -+.+...|..+..+|.+.|++++|
T Consensus        16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence            34444444444444331    133444444444444444444444444444432  122333444444444444444444


Q ss_pred             HHHHHHHHhCC------------CC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673          188 LELLNEMENKG------------VE--V-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL  236 (403)
Q Consensus       188 ~~~~~~~~~~~------------~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (403)
                      .+.|++.....            ..  . ...++..+..++.+.|++++|.+.+....+....+
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            44444443210            00  0 01334455566666777777777766666554333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.84  E-value=8.4e-06  Score=65.36  Aligned_cols=117  Identities=13%  Similarity=0.013  Sum_probs=65.7

Q ss_pred             CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 015673          250 GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG----SG  321 (403)
Q Consensus       250 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  321 (403)
                      ......+...+......+   +...+..|...|..    ..+...+...++...+.|   +......+...+..    ..
T Consensus       123 ~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~  196 (265)
T d1ouva_         123 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK  196 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred             cchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCccccc
Confidence            344555555555554432   44455555555553    344556666666665543   44444444444443    45


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCch
Q 015673          322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      +.++|+.+|++..+.|   ++..+..|...|.+    ..+.++|.+.|++..+....+
T Consensus       197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             chhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            6777777777776665   34455556666654    336777777777776654444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=1.3e-07  Score=77.55  Aligned_cols=131  Identities=10%  Similarity=-0.011  Sum_probs=76.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc----hHHHH
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDEL----GTPR-SVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD----KISYG  172 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~  172 (403)
                      ....+|...+++++|.+.|.++.+.    +-++ -..+|..+..+|.+.|++++|...+++..+...-..+    ..++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3456677788888888888776542    1111 1345677777777777777777777765432111111    23445


Q ss_pred             HHHHHHH-hcCChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          173 LLLKSHC-DSGSSDKALELLNEMENK----GVEV-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       173 ~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      .+...|. ..|++++|++.+++..+.    +.++ -..++..+...+...|++++|+..|+++...
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            5555553 357777777777765432    1111 1234556666777777777777777766554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.6e-07  Score=71.61  Aligned_cols=126  Identities=12%  Similarity=-0.028  Sum_probs=74.4

Q ss_pred             HHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCc
Q 015673           71 RLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDK  150 (403)
Q Consensus        71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  150 (403)
                      .+...|+++.|++.|+++.    +++..+|..+..+|...|++++|++.|++.++.++. +...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence            3445556666665555432    233444555566666666666666666666555433 45555555556666666666


Q ss_pred             HHHHHHHchhhC-----------CC--CC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 015673          151 VPILFDEIPKKY-----------NL--SP-DKISYGLLLKSHCDSGSSDKALELLNEMENKGVEV  201 (403)
Q Consensus       151 a~~~~~~~~~~~-----------~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  201 (403)
                      |+..|++.....           +.  .+ ...++..+..++.+.|++++|.+.+....+....+
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            665555543210           11  11 12456677888999999999999999988764443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=3.4e-07  Score=74.90  Aligned_cols=198  Identities=11%  Similarity=-0.014  Sum_probs=110.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCc--hHHHH
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENK----GVEV-TTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV---DLD--VAAYN  242 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~  242 (403)
                      .....|...|++++|.+.|.++.+.    +.++ -..+|..+..+|.+.|++++|...+++..+...   .+.  ...+.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3344566666666666666665432    1111 124566666677777777777777665543210   111  12223


Q ss_pred             HHHhhh--cCCChHHHHHHHHHHHHC----CCCC-ChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----H-HH
Q 015673          243 VRITNT--YGGDPERLKELIDEMRDA----GLKP-DTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN-----A-TT  309 (403)
Q Consensus       243 ~ll~~~--~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~-~~  309 (403)
                      .+...+  ..|+++.|...+++..+.    +..+ -..++..+...+...|++++|...|+++........     . ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            333333  357777777777765432    1111 123466778888888888888888888775431111     1 12


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 015673          310 FRTWIYHLCGSGNFDKAYKVFKESVMVHKI-P---DFNTVKLLVEGLVK--KKKIKEAKGVIRTIKK  370 (403)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~  370 (403)
                      +...+.++...|+++.|...+++..+.... +   ....+..++.++..  .+.+++|+..|+++.+
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            344455667788888888888887765311 1   12344556666554  2446777777765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.2e-08  Score=66.62  Aligned_cols=105  Identities=15%  Similarity=0.012  Sum_probs=79.8

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      +...+..+...|++++|+..|+++++.+  |. +...|..+..++...|++++|+..++.... ..+.+...|..+..++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~--p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLD--PH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-chhhhhcccccccccccccccchhhhhHHH-hccchhhHHHHHHHHH
Confidence            4456777888888888888888888887  44 556777888888888888888888888874 3556677788888888


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCcHHHHHH
Q 015673          108 GQAGMFDHAMRTFDQMDELGTPRSVISFNA  137 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  137 (403)
                      ...|++++|+..|+...+..+. +...+..
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~  110 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEG  110 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT-CHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence            8888888888888888875533 3333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-07  Score=69.65  Aligned_cols=98  Identities=14%  Similarity=0.062  Sum_probs=70.3

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|...|++..+.. +-+...|..+..+|...|++++|...|+.+++.. +.+...|..+..++...|++++|..
T Consensus        22 ~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~~   99 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR   99 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7788888888888877764 3356677777777888888888888888877664 4456677777778888888888888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHH
Q 015673          329 VFKESVMVHKIPDFNTVKLLV  349 (403)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~  349 (403)
                      .+++..... +.+...+..+.
T Consensus       100 ~~~~a~~~~-p~~~~~~~~l~  119 (159)
T d1a17a_         100 DYETVVKVK-PHDKDAKMKYQ  119 (159)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHH
T ss_pred             HHHHHHHcC-CCCHHHHHHHH
Confidence            888877655 44455544443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=2.1e-07  Score=71.56  Aligned_cols=85  Identities=11%  Similarity=0.010  Sum_probs=45.9

Q ss_pred             cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYK  328 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (403)
                      ..|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+..++.. +-+...|..+..+|...|++++|+.
T Consensus        16 ~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l~~~~~A~~   93 (201)
T d2c2la1          16 VGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIA   93 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            5555555555555555443 2244455555555555555555555555555442 2234455555555555555555555


Q ss_pred             HHHHHHh
Q 015673          329 VFKESVM  335 (403)
Q Consensus       329 ~~~~~~~  335 (403)
                      .|+++++
T Consensus        94 ~~~~al~  100 (201)
T d2c2la1          94 NLQRAYS  100 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=1.3e-07  Score=72.76  Aligned_cols=100  Identities=9%  Similarity=-0.039  Sum_probs=81.9

Q ss_pred             cccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHH
Q 015673           22 TASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLC  101 (403)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (403)
                      +|+...+...+..+.+.|++++|+..|++++..+  |. +..+|..++.+|.+.|++++|+..|+.... -.|.....|.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-l~p~~~~a~~   76 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-VAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSVKAHF   76 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH-hCCCcHHHHH
Confidence            3566677788888999999999999999988888  54 567778888889999999999999988873 4556677788


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHh
Q 015673          102 NLIRSYGQAGMFDHAMRTFDQMDE  125 (403)
Q Consensus       102 ~l~~~~~~~~~~~~A~~~~~~~~~  125 (403)
                      .+..+|...|++++|+..|+.+.+
T Consensus        77 ~lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888888899999999988888765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.64  E-value=3.9e-05  Score=61.28  Aligned_cols=221  Identities=14%  Similarity=0.032  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCcCcHHHHHHHchhhCCCCCchHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTR----SRLYDKVPILFDEIPKKYNLSPDKISYGLL  174 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  174 (403)
                      .+..|...+.+.+++++|++.|++..+.|   +..++..|...|..    ..+...+...+....+. +   +......+
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~---~~~a~~~l   76 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-c---ccchhhcc
Confidence            34455555566666666666666666544   44455555555544    33445555555555432 2   22223333


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 015673          175 LKSHCD----SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYK----QGNAEEAERLWSEMEKKGVDLDVAAYNVRIT  246 (403)
Q Consensus       175 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  246 (403)
                      ...+..    ..+.+.|...++...+.|..   .....+...+..    ......+...+......+   +...+..+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~  150 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  150 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence            333322    34556666666666665432   122222222222    234555666665555432   2222332222


Q ss_pred             hh-----cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015673          247 NT-----YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHL  317 (403)
Q Consensus       247 ~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (403)
                      .+     ...+...+...++...+.|   +......+...|..    ..+.++|..+|....+.|   ++..+..|...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y  224 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  224 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence            22     3456667777777776654   45555556555554    567888888888888776   455555666666


Q ss_pred             Hc----cCChHHHHHHHHHHHhCCC
Q 015673          318 CG----SGNFDKAYKVFKESVMVHK  338 (403)
Q Consensus       318 ~~----~~~~~~a~~~~~~~~~~~~  338 (403)
                      ..    ..+.++|.+.|++..+.|.
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HcCCCCccCHHHHHHHHHHHHHCcC
Confidence            54    3477888888888877763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.6e-07  Score=65.30  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=81.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 015673          276 NFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGN---FDKAYKVFKESVMVHKIPD-FNTVKLLVEG  351 (403)
Q Consensus       276 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  351 (403)
                      ..++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++   +++|+.++++++..+..|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            457788888999999999999999876 6678888889999987554   4579999999887653333 3477788999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCchhHHHH
Q 015673          352 LVKKKKIKEAKGVIRTIKKKFPPNVLRAW  380 (403)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  380 (403)
                      |.+.|++++|++.|+++.+.. |+...+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~-P~~~~A~  109 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTE-PQNNQAK  109 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhC-cCCHHHH
Confidence            999999999999999999844 4444333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.63  E-value=2.4e-07  Score=63.58  Aligned_cols=93  Identities=12%  Similarity=0.031  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK  354 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (403)
                      +..+...+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..|++.++.. +.+...+..+..+|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence            3446677888899999999999988774 4467888888899999999999999999988876 6678888889999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 015673          355 KKKIKEAKGVIRTIK  369 (403)
Q Consensus       355 ~g~~~~a~~~~~~~~  369 (403)
                      .|++++|.+.+++..
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999988763

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.6e-07  Score=68.04  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=8.1

Q ss_pred             hhhccCChHHHHHHHHHhhhc
Q 015673           34 KLRSEFDPDKALDIYSSVSKH   54 (403)
Q Consensus        34 ~l~~~~~~~~A~~~~~~~~~~   54 (403)
                      .+.+.|++++|+..|+++++.
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~   39 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIEL   39 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHhhhcccc
Confidence            333333333333333333333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.51  E-value=2.3e-07  Score=63.67  Aligned_cols=92  Identities=9%  Similarity=-0.065  Sum_probs=68.1

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 015673           28 VSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSY  107 (403)
Q Consensus        28 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  107 (403)
                      ....+..+.+.|++++|+..|+++++.+  |. +..+|..+..++.+.|++++|+..|++... ..|.+...+..+..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PE-REEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSH   94 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc--cc-cchhhhhhhhhhhhhhhHHHhhcccccccc-cccccccchHHHHHHH
Confidence            3445667777788888888888888777  43 566677777788888888888888887764 4455666777788888


Q ss_pred             hccCCHHHHHHHHHHH
Q 015673          108 GQAGMFDHAMRTFDQM  123 (403)
Q Consensus       108 ~~~~~~~~A~~~~~~~  123 (403)
                      ...|++++|++.|++.
T Consensus        95 ~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          95 TNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            8888888888877765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.41  E-value=0.0003  Score=57.48  Aligned_cols=292  Identities=11%  Similarity=0.013  Sum_probs=147.9

Q ss_pred             ccchhHHHHHhhhhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHH
Q 015673           23 ASSISVSKAKSKLRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCN  102 (403)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (403)
                      |+......++..|.+.|.++.|..+|..+..           |..++..+.+.++++.|.+++.+..      +..+|..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~   74 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKE   74 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC-----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHH
Confidence            4556666777778888888888888876532           3456677778888888887776542      3556777


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcC
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSG  182 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  182 (403)
                      +...+.+......|     .+.......+......++..|-..|.+++...++.....  .-.++...++.++..|++.+
T Consensus        75 ~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~--~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          75 VCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--CCccchHHHHHHHHHHHHhC
Confidence            77777777665543     222222334555666778888888888888888887653  23456667778888887754


Q ss_pred             ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHH
Q 015673          183 SSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDE  262 (403)
Q Consensus       183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~  262 (403)
                       .++..+.+....      +.....-++..|-+.+-+.++.-++.++...     ......++...  .+........+-
T Consensus       148 -~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~-----~~A~~~~i~~~--~~~~~~~~f~e~  213 (336)
T d1b89a_         148 -PQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-----DNAIITMMNHP--TDAWKEGQFKDI  213 (336)
T ss_dssp             -HHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH-----HHHHHHHHHST--TTTCCHHHHHHH
T ss_pred             -hHHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCH-----HHHHHHHHHcc--hhhhhHHHHHHH
Confidence             333333333221      1122233445555555555555555443221     11111111111  111111111122


Q ss_pred             HHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 015673          263 MRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDF  342 (403)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (403)
                      ..+.   .|+..|...+..|... +.+-...++..+...   -|.   ..++..+-+.+++.-...+++...+.+   +.
T Consensus       214 ~~k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~  280 (336)
T d1b89a_         214 ITKV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NK  280 (336)
T ss_dssp             HHHC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CH
T ss_pred             HHcc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hH
Confidence            2221   1333444444444432 122233333333221   111   234455566677777777777665544   34


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH
Q 015673          343 NTVKLLVEGLVKKKKIKEAKGVI  365 (403)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~  365 (403)
                      .+.+++...|...++++.-+..+
T Consensus       281 ~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         281 SVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcchhHHHHHHH
Confidence            68888888999998876544444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.38  E-value=8.5e-06  Score=59.12  Aligned_cols=76  Identities=13%  Similarity=0.024  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          308 TTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      .+|..+..+|.+.|++++|++.++++++.+ |.+..+|..+..++...|++++|...|++..+. .|++...+..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~n~~~~~~l~~  143 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence            366778888999999999999999998876 678899999999999999999999999999884 4454555555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.7e-06  Score=61.29  Aligned_cols=106  Identities=12%  Similarity=-0.029  Sum_probs=71.0

Q ss_pred             cCCChHHHHHHHHHHHHCCCC-CC-------------hhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673          249 YGGDPERLKELIDEMRDAGLK-PD-------------TISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI  314 (403)
Q Consensus       249 ~~~~~~~a~~~~~~~~~~~~~-~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  314 (403)
                      ..|++++|...|.+....... +.             ..+|+.+..+|.+.|++++|+..++..++.+ +.+...+..+.
T Consensus        25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g  103 (170)
T d1p5qa1          25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRG  103 (170)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHH
Confidence            778888888888887654211 10             1335556777777888888888888777764 44677777777


Q ss_pred             HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015673          315 YHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK  356 (403)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  356 (403)
                      .++...|++++|+..|+++++.. |.+..+...+..+..+.+
T Consensus       104 ~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1         104 EAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence            78888888888888888877655 345555555544444333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2e-06  Score=59.58  Aligned_cols=92  Identities=14%  Similarity=0.120  Sum_probs=40.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---cCcHHHHHHHchhhCCCCCc-hHHHHHHHHHH
Q 015673          103 LIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRL---YDKVPILFDEIPKKYNLSPD-KISYGLLLKSH  178 (403)
Q Consensus       103 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~  178 (403)
                      +++.+...+++++|.+.|+.....++. +..++..+..++.+.++   +++|+.+|+++... ...|+ ..++..+..+|
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHH
Confidence            444444555555555555555544432 44444444444444322   22344444444432 11111 12344444455


Q ss_pred             HhcCChHHHHHHHHHHHh
Q 015673          179 CDSGSSDKALELLNEMEN  196 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~  196 (403)
                      .+.|++++|.+.|+++.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            555555555555555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.8e-06  Score=57.27  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHK--IPD----FNTVKLL  348 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l  348 (403)
                      +..+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|+..++++++...  ...    ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3446667778888888888888888765 45677788888888888888888888888776421  111    2356667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh
Q 015673          349 VEGLVKKKKIKEAKGVIRTIKKK  371 (403)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~  371 (403)
                      ...+...+++++|++.|++....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            77788888888888888877653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.1e-05  Score=58.14  Aligned_cols=111  Identities=11%  Similarity=-0.003  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHH
Q 015673           99 YLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSH  178 (403)
Q Consensus        99 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  178 (403)
                      .+......+.+.|++++|+..|.+.+......              .+..+.-......+        ...+|+.+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYE--------------SSFSNEEAQKAQAL--------RLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC--------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc--------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence            34456667778888888888888776532110              00011111111111        123566778888


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015673          179 CDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKK  232 (403)
Q Consensus       179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  232 (403)
                      .+.|++++|+..++...+.+ |.++..+..+..+|...|++++|+..|++..+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            88888888888888888763 347778888888888888888888888888876

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=9.8e-06  Score=56.75  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCc-----hHHHHHHH
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPD-----KISYGLLL  175 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~  175 (403)
                      ..+...+.+.|++++|+..|++.++.++. +..++..+..+|.+.|++++|+..++++++...-.+.     ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            34566666667777777777666665543 5666666666666666666666666665532100011     13455556


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 015673          176 KSHCDSGSSDKALELLNEMEN  196 (403)
Q Consensus       176 ~~~~~~~~~~~a~~~~~~~~~  196 (403)
                      ..+...+++++|++.|++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            666666667777776666554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=1.9e-05  Score=58.30  Aligned_cols=77  Identities=8%  Similarity=-0.002  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          307 ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      ...|..+..++.+.|++++|+..++++++.. +.+..+|..+..+|.+.|++++|+..|++..+..| +....+..+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~  153 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            3456667788888899999999999988776 66788888888899999999999999998887444 43434444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.14  E-value=0.00022  Score=52.33  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh
Q 015673          205 TYTTVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK  284 (403)
Q Consensus       205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  284 (403)
                      .+......+.+.|++++|+..|.+.+..-            ........+. ......+       ....|+.+..+|.+
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~------------~~~~~~~~~~-~~~~~~~-------~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWL------------EMEYGLSEKE-SKASESF-------LLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------TTCCSCCHHH-HHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------HHhhccchhh-hhhcchh-------HHHHHHhHHHHHHH
Confidence            44556677888888888888887765420            0000111111 1111111       13356678889999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHH
Q 015673          285 NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIK-EAKG  363 (403)
Q Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~  363 (403)
                      .|++++|+..++..++.. +.+...|..+..++...|++++|+..|+++++.. |.+..+...+-.+....+... ...+
T Consensus        77 l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999875 6678899999999999999999999999999876 566666666655554544433 3445


Q ss_pred             HHHHHHH
Q 015673          364 VIRTIKK  370 (403)
Q Consensus       364 ~~~~~~~  370 (403)
                      ++..|-+
T Consensus       155 ~~~~~f~  161 (168)
T d1kt1a1         155 TYANMFK  161 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.4e-07  Score=79.16  Aligned_cols=223  Identities=9%  Similarity=-0.023  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchH-HHHHHHHHHHhcCChHHHHHHHH
Q 015673          115 HAMRTFDQMDELGTPRS-VISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKI-SYGLLLKSHCDSGSSDKALELLN  192 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~  192 (403)
                      +|.+.|++..+..  |+ ...+..+..++...|++++|   |++++..   .|+.. .++.  ....-...+..+.+.++
T Consensus         4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~--e~~Lw~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKV--EQDLWNHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTH--HHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhH--HHHHHHHHHHHHHHHHH
Confidence            5667777766532  33 34455555566666655544   5555432   12111 1111  11110112344555555


Q ss_pred             HHHhCCCCCchhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHhhh-cCCChHHHHHHHHHHHHCCC
Q 015673          193 EMENKGVEVTTVTYTTVLNC--LYKQGNAEEAERLWSEMEKKGVDLD-VAAYNVRITNT-YGGDPERLKELIDEMRDAGL  268 (403)
Q Consensus       193 ~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~  268 (403)
                      ...+....++..-....+..  ....+.++.++..+....+.  .|+ ...+..+-..+ ..|+.+.|...+....... 
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH-
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence            55544333332222221111  11233444444444433332  222 12222222222 5566666665555544321 


Q ss_pred             CCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015673          269 KPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLL  348 (403)
Q Consensus       269 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  348 (403)
                        ...++..+...+...|++++|...|.+..+.. +-+...|+.+...+...|+..+|+..|.+.+... +|-+.++..|
T Consensus       151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL  226 (497)
T d1ya0a1         151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL  226 (497)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence              12345556666666666677766666666553 3344566666666666666666666666666554 4556666666


Q ss_pred             HHHHHh
Q 015673          349 VEGLVK  354 (403)
Q Consensus       349 ~~~~~~  354 (403)
                      ...+.+
T Consensus       227 ~~~~~~  232 (497)
T d1ya0a1         227 QKALSK  232 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.08  E-value=6e-05  Score=55.51  Aligned_cols=125  Identities=13%  Similarity=0.031  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCC
Q 015673          208 TVLNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEM  287 (403)
Q Consensus       208 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  287 (403)
                      .....+...|++++|+..|.++++..  +..         ..........    .+.    +.+...+..+..++.+.|+
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~--~~~---------~~~~~~~~~~----~~~----~~~~~~~~nla~~~~~~~~   92 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYV--EGS---------RAAAEDADGA----KLQ----PVALSCVLNIGACKLKMSD   92 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH--HHH---------HHHSCHHHHG----GGH----HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh--hhh---------hhhhhhHHHH----HhC----hhhHHHHHHHHHHHHhhcc
Confidence            34556677888888888887765420  000         0000000000    000    1134567778889999999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015673          288 MDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTVKLLVEGLV  353 (403)
Q Consensus       288 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (403)
                      +++|+..+..+++.. +.+...|..+..++...|++++|+..|+++++.. +.+..+...+..+..
T Consensus        93 ~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          93 WQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            999999999999875 5678899999999999999999999999999876 556666665555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.07  E-value=0.00013  Score=53.55  Aligned_cols=109  Identities=13%  Similarity=0.054  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCC-----------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 015673          275 YNFLMTCYCKNEMMDEAKKVYEGLEE---NGCSPN-----------ATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIP  340 (403)
Q Consensus       275 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (403)
                      +......+.+.|++.+|...|.+.+.   .....+           ..+|..+..+|.+.|++++|+..+++.++.+ +.
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~   96 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA   96 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc
Confidence            33445556667777777777766542   111111           2345667788999999999999999999876 77


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          341 DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      +..+|..+..+|...|++++|...|+++.+ +.|++...+..+..
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~-l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLE-VNPQNKAARLQIFM  140 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence            889999999999999999999999999987 45555545555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.05  E-value=0.0012  Score=53.86  Aligned_cols=238  Identities=12%  Similarity=0.070  Sum_probs=148.4

Q ss_pred             hhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015673           62 RYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFA  141 (403)
Q Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~  141 (403)
                      ..-...++..|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+.+...      -+..+|..+...
T Consensus        14 ~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~   78 (336)
T d1b89a_          14 NAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA   78 (336)
T ss_dssp             ---------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHH
Confidence            33445678888999999999999998763         778999999999999998887755      367789899999


Q ss_pred             HHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHH
Q 015673          142 CTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEE  221 (403)
Q Consensus       142 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  221 (403)
                      +.+......+     .+... ....+......++..|...|.++....+++..... -..+...++.++.+|++.+ .++
T Consensus        79 l~~~~e~~la-----~i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k  150 (336)
T d1b89a_          79 CVDGKEFRLA-----QMCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK  150 (336)
T ss_dssp             HHHTTCHHHH-----HHTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH
T ss_pred             HHhCcHHHHH-----HHHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH
Confidence            8887655332     11111 33345666678999999999999999999987654 3457778889999998864 334


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHhhh-cCCChHHHHHHHHHHHHC--------CCCCChhcHHHHHHHHHhcCChHHHH
Q 015673          222 AERLWSEMEKKGVDLDVAAYNVRITNT-YGGDPERLKELIDEMRDA--------GLKPDTISYNFLMTCYCKNEMMDEAK  292 (403)
Q Consensus       222 a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~  292 (403)
                      .   .+.+...+..   .-...++..| ..+-+.++.-++..+...        ...++..-....+..+.+..+.+...
T Consensus       151 l---~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~  224 (336)
T d1b89a_         151 M---REHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY  224 (336)
T ss_dssp             H---HHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred             H---HHHHHhcccc---CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHH
Confidence            3   3333332111   2223445566 667777777766654211        01334444455666677777777766


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 015673          293 KVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKE  332 (403)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  332 (403)
                      ++.....+.  .|  ...+.++......-+..+.++.+++
T Consensus       225 ~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k  260 (336)
T d1b89a_         225 RAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSK  260 (336)
T ss_dssp             HHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHh
Confidence            666665553  23  3456666666666677666666654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.04  E-value=7.1e-05  Score=54.03  Aligned_cols=112  Identities=10%  Similarity=-0.002  Sum_probs=76.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHH
Q 015673          100 LCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHC  179 (403)
Q Consensus       100 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  179 (403)
                      +..-...+.+.|++.+|+..|..+...-..               ........ .......     ....+|+.+..+|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~---------------~~~~~~~~-~~~~~~~-----~~~~~~~Nla~~~~   78 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIH---------------TEEWDDQI-LLDKKKN-----IEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT---------------CTTCCCHH-HHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------------hhhhhhHH-HHHhhhh-----HHHHHHhhHHHHHH
Confidence            445566777888888888888877653110               11111110 1111100     12346777888889


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          180 DSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      +.|++++|++.++.+.+.+ +.+..+|..+..++...|++++|+..|+...+..
T Consensus        79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999888763 4577888889999999999999999999888863

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=0.00014  Score=53.78  Aligned_cols=124  Identities=11%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHh
Q 015673          101 CNLIRSYGQAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCD  180 (403)
Q Consensus       101 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  180 (403)
                      ..........|++++|.+.|......-.  ...        +......+-+...-..+...     ....+..+..++..
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~--------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~   79 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWR--GPV--------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCC--SST--------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCc--ccc--------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            3455667788999999999888876421  110        01111111222222222221     34567788889999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCchHH
Q 015673          181 SGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEK-----KGVDLDVAA  240 (403)
Q Consensus       181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  240 (403)
                      .|++++|+..++.+.+. .+-+...|..++.+|...|+.++|++.|+++.+     .|+.|+..+
T Consensus        80 ~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          80 CGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99999999999999887 456888899999999999999999999988743     577777654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.5e-06  Score=75.26  Aligned_cols=227  Identities=9%  Similarity=-0.057  Sum_probs=121.8

Q ss_pred             hHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCcCcHHHHHHHc
Q 015673           80 DIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELGTPRSV-ISFNALLFACTRSRLYDKVPILFDEI  158 (403)
Q Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~  158 (403)
                      +|.+.|++.... .+.....+..+..++...|++++|   |+++...+  |+. ..++... .+. ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l-~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVL-KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHH-HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHH-HHHHHHHHHHHHHh
Confidence            577888887631 222233455677788888888876   77776533  221 1122111 111 12244566777766


Q ss_pred             hhhCCCCCchHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015673          159 PKKYNLSPDKISYGLLLKS--HCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGVDL  236 (403)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  236 (403)
                      .+. ...++..-.......  ....+.++.++..+....+. .+++...+..+...+.+.|+.+.|...+......  .|
T Consensus        76 ~k~-~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~  151 (497)
T d1ya0a1          76 AKN-RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC  151 (497)
T ss_dssp             HSC-SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH
T ss_pred             ccc-ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH
Confidence            543 222333222222222  22345566666555554443 2345667788888899999999999888776653  22


Q ss_pred             chHHHHHHHhhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015673          237 DVAAYNVRITNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIY  315 (403)
Q Consensus       237 ~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  315 (403)
                      . ..+..+-..+ ..|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+.+... +|-..++..|..
T Consensus       152 ~-~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~  228 (497)
T d1ya0a1         152 Q-HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK  228 (497)
T ss_dssp             H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence            2 2333333344 8899999999999999874 3356799999999999999999999999999776 678888888887


Q ss_pred             HHHccC
Q 015673          316 HLCGSG  321 (403)
Q Consensus       316 ~~~~~~  321 (403)
                      .+.+..
T Consensus       229 ~~~~~~  234 (497)
T d1ya0a1         229 ALSKAL  234 (497)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            776543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=0.00027  Score=52.24  Aligned_cols=123  Identities=9%  Similarity=-0.038  Sum_probs=82.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhhcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChH
Q 015673          210 LNCLYKQGNAEEAERLWSEMEKKGVDLDVAAYNVRITNTYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMD  289 (403)
Q Consensus       210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  289 (403)
                      .......|++++|.+.|.......  +...     +..+..+.+  +...-..+...    ....+..+..++...|+++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~-----l~~~~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREW--RGPV-----LDDLRDFQF--VEPFATALVED----KVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC--CSST-----TGGGTTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--cccc-----cccCcchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence            345677788888888888877642  1111     001111111  11111222211    2345677888899999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 015673          290 EAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVM-----VHKIPDFNTVK  346 (403)
Q Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  346 (403)
                      +|+..++.+.+.. +-+...|..++.+|...|+.++|++.|+++..     .|+.|...+-.
T Consensus        85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~  145 (179)
T d2ff4a2          85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  145 (179)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            9999999998875 66788999999999999999999999988743     48888876533

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.88  E-value=1.6e-05  Score=63.11  Aligned_cols=123  Identities=8%  Similarity=-0.005  Sum_probs=85.5

Q ss_pred             hcCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHH
Q 015673          248 TYGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPN-ATTFRTWIYHLCGSGNFDKA  326 (403)
Q Consensus       248 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a  326 (403)
                      +..|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.  .|+ ...+..+...+...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence            36799999999999999874 447788999999999999999999999999887  344 44554454444444333333


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 015673          327 YKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFP  373 (403)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (403)
                      ..-.......+-+++...+......+...|+.++|.+.++++.+..|
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            22211111112123334455556778889999999999999987543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=1.2e-05  Score=57.55  Aligned_cols=83  Identities=12%  Similarity=0.008  Sum_probs=53.5

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      +-+.+.+++|++.|+.+.+.+  |. +..++..+..++...+++..+.+-                         .+.++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--P~-~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~   58 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--PL-DADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQ   58 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--Cc-chHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHH
Confidence            344566888888888888887  44 455566667666665555444331                         23446


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSR  146 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  146 (403)
                      +|+..|+++.+.++. +..+|..+..+|...|
T Consensus        59 ~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          59 EAITKFEEALLIDPK-KDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcch-hhHHHhhHHHHHHHcc
Confidence            777777777776543 5667777777766554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=4.5e-05  Score=54.52  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673          323 FDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKK-----------KIKEAKGVIRTIKKKFPPNVLRAWKKV  383 (403)
Q Consensus       323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l  383 (403)
                      +++|+..|+++++.+ |.+..+|..+..+|...|           .+++|.+.|++..+ ..|+....+..|
T Consensus        57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-l~P~~~~~~~~L  126 (145)
T d1zu2a1          57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-EQPDNTHYLKSL  126 (145)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-cCCCHHHHHHHH
Confidence            344555555555444 344455555555554433           23555555555554 233333344433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.78  E-value=1.8e-05  Score=62.88  Aligned_cols=51  Identities=6%  Similarity=0.008  Sum_probs=28.3

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchh
Q 015673          109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPK  160 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  160 (403)
                      +.|++++|+..+++.++..+. |...+..+...++..|++++|...++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445555555555555554432 455555555555555555555555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00034  Score=45.51  Aligned_cols=71  Identities=7%  Similarity=0.055  Sum_probs=41.1

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHH
Q 015673          312 TWIYHLCGSGNFDKAYKVFKESVMVH-----KIP-DFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKV  383 (403)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  383 (403)
                      .+...+.+.|++++|+..|++.++..     ..+ ...++..+..++.+.|++++|+..++++.+ ..|+...++..+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~-l~P~~~~a~~Nl   86 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-LDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH-hCcCCHHHHHHH
Confidence            45556666666666666666655431     011 235566667777777777777777777666 334444455444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.51  E-value=0.00079  Score=48.45  Aligned_cols=63  Identities=14%  Similarity=0.043  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          169 ISYGLLLKSHCDSGSSDKALELLNEMENK-----GVEVT-----TVTYTTVLNCLYKQGNAEEAERLWSEMEK  231 (403)
Q Consensus       169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  231 (403)
                      ..|+.+..+|...|++++|.+.+++..+.     ...++     ...+..+..+|...|++++|+..|++..+
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788888888887777776532     11111     22456677788888888888888877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.39  E-value=0.0018  Score=46.47  Aligned_cols=97  Identities=19%  Similarity=0.075  Sum_probs=69.6

Q ss_pred             cHHHH--HHHHHhcCChHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 015673          274 SYNFL--MTCYCKNEMMDEAKKVYEGLEENGC-SPN----------ATTFRTWIYHLCGSGNFDKAYKVFKESVMV----  336 (403)
Q Consensus       274 ~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  336 (403)
                      +|..+  ...+.+.|++++|+..|++.++... .|+          ..+|+.+..+|...|++++|...+++.++.    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  4455677889999998888775210 111          356788888999999999999888887653    


Q ss_pred             -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015673          337 -HKIPD-----FNTVKLLVEGLVKKKKIKEAKGVIRTIKK  370 (403)
Q Consensus       337 -~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (403)
                       ...++     ...+..+..+|...|++++|.+.|++..+
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             11121     23567788999999999999999999765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0023  Score=41.31  Aligned_cols=66  Identities=11%  Similarity=-0.034  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015673          168 KISYGLLLKSHCDSGSSDKALELLNEMENKG------VEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKG  233 (403)
Q Consensus       168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  233 (403)
                      ...+..+...+.+.|+++.|...|++..+..      ......++..+..++.+.|++++|+..++++++..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3445566777777777777777777665421      11123456777777777777777777777777763

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.95  E-value=0.025  Score=38.84  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=20.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 015673          322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVK----KKKIKEAKGVIRTIKK  370 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~  370 (403)
                      +.++|.++|++..+.+   ++.....|...|..    ..+.++|.+++++..+
T Consensus        74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            3445555555554443   22233333333333    2345555555555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.84  E-value=0.034  Score=38.13  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             CCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 015673          250 GGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCK----NEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCG----SG  321 (403)
Q Consensus       250 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  321 (403)
                      ..+.++|...+++..+.|   +......|...|..    ..+.++|..+|+...+.|   ++.....|...|..    ..
T Consensus        36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence            345566666666665554   34444445544443    345667777777776655   33344444444443    34


Q ss_pred             ChHHHHHHHHHHHhCC
Q 015673          322 NFDKAYKVFKESVMVH  337 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~  337 (403)
                      +.++|.++|++..+.|
T Consensus       110 d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            6667777777766665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.71  E-value=0.036  Score=36.73  Aligned_cols=141  Identities=14%  Similarity=0.025  Sum_probs=71.8

Q ss_pred             hhccCChHHHHHHHHHhhhccCCCCcchhhHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHH
Q 015673           35 LRSEFDPDKALDIYSSVSKHYASPVSSRYAQDLTVRRLAKSKRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFD  114 (403)
Q Consensus        35 l~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (403)
                      +...|..++..++..+.....     +..-|+.++--....-+-+...+.++.+-.....             ..+++..
T Consensus        12 ~ildG~ve~Gveii~k~~~ss-----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl-------------s~C~Nlk   73 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL-------------DKCQNLK   73 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-------------GGCSCTH
T ss_pred             HHHhhhHHhHHHHHHHHcccC-----CccccceeeeecccccchHHHHHHHHHHhhhcCc-------------hhhhcHH
Confidence            344566666666666666544     2233344444444444445555555554321111             1222222


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015673          115 HAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSPDKISYGLLLKSHCDSGSSDKALELLNEM  194 (403)
Q Consensus       115 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  194 (403)
                      .....+-.+-     .+...+...++.+..+|.-+...++++.+.+  .-.+++...-.+..+|.+.|...++-+++.++
T Consensus        74 ~vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          74 SVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             HHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            2222222221     1334444455556666666666666666545  33455555666667777777777777777776


Q ss_pred             HhCCCC
Q 015673          195 ENKGVE  200 (403)
Q Consensus       195 ~~~~~~  200 (403)
                      .+.|.+
T Consensus       147 Ce~G~K  152 (161)
T d1wy6a1         147 CKKGEK  152 (161)
T ss_dssp             HHTTCH
T ss_pred             HHHhHH
Confidence            666653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.69  E-value=0.15  Score=33.79  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcCcHHHHHHHchhhCCCCC----------------chHHHH
Q 015673          109 QAGMFDHAMRTFDQMDELGTPRSVISFNALLFACTRSRLYDKVPILFDEIPKKYNLSP----------------DKISYG  172 (403)
Q Consensus       109 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~  172 (403)
                      -.|..++..+++.+....   .+..-||.++--....-+-+-..++++.+-+.+.+.|                +.....
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd   90 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN   90 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence            345566666665555442   2333444444444444444444444444422221111                233344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015673          173 LLLKSHCDSGSSDKALELLNEMENKGVEVTTVTYTTVLNCLYKQGNAEEAERLWSEMEKKGV  234 (403)
Q Consensus       173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  234 (403)
                      ..+....+.|.-+.-.+++..+.+. -++++...-.+..+|.+.|...++-.++.+.-+.|+
T Consensus        91 lALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          91 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            4555555666666666666665553 334555556666666666666666666666665553

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.1  Score=34.76  Aligned_cols=71  Identities=14%  Similarity=0.058  Sum_probs=49.9

Q ss_pred             CCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch
Q 015673          304 SPNATTFRTWIYHLCGSG---NFDKAYKVFKESVMVHKIPDF-NTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPPN  375 (403)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  375 (403)
                      .+...+--....+++++.   +.++++.+++++.+.+ +.+. ..+..|.-+|.+.|++++|.+.++.+.+..|.+
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            455556556666777654   4567888888887654 3343 566777888888999999999998888844444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.15  Score=33.92  Aligned_cols=65  Identities=15%  Similarity=0.030  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHhc---CCcchHHHHHHHhhcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 015673           63 YAQDLTVRRLAKS---KRFSDIETLIESHKNDPKITQEPYLCNLIRSYGQAGMFDHAMRTFDQMDELG  127 (403)
Q Consensus        63 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  127 (403)
                      .+-...+-+++++   .++++++.+|+.+...........+..|.-+|.+.|++++|.+.++.+++..
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            3333444445544   3345677777776642221222344556666777777777777777777644

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.58  E-value=0.45  Score=29.67  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc
Q 015673          322 NFDKAYKVFKESVMVHKIPDFNTVKLLVEGLVKKKKIKEAKGVIRTIKKKFPP  374 (403)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (403)
                      +.=++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+.++.+..+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~   73 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP   73 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            44466777777777788888888888888888888888888888888776543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=3.4  Score=34.43  Aligned_cols=166  Identities=8%  Similarity=-0.104  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCchHHH--HHHH-hhh-cCCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHH
Q 015673          217 GNAEEAERLWSEMEKKGVDLDVAAY--NVRI-TNT-YGGDPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAK  292 (403)
Q Consensus       217 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll-~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  292 (403)
                      .+.+.+...+...............  ...+ ... ..+..+.+...+......+  .+.......+......+++..+.
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~  305 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN  305 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence            4677777777776654322222111  1111 122 4566777777777766553  24444444555566778888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------------CCCC-----------CH----HHH
Q 015673          293 KVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMV------------HKIP-----------DF----NTV  345 (403)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-----------~~----~~~  345 (403)
                      ..+..|.... .....-.--+..++...|+.++|...|..+...            |.++           ..    ..-
T Consensus       306 ~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~  384 (450)
T d1qsaa1         306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE  384 (450)
T ss_dssp             HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred             HHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChH
Confidence            8887775432 122333335567788888888888888875431            1110           00    001


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 015673          346 KLLVEGLVKKKKIKEAKGVIRTIKKKFPPNVLRAWKKVEE  385 (403)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  385 (403)
                      ..-+..+...|....|...|..+..+.++........+..
T Consensus       385 ~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~  424 (450)
T d1qsaa1         385 MARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAF  424 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            1235667788999999998888877666665544444433

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.95  E-value=1.4  Score=27.49  Aligned_cols=62  Identities=13%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhcHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015673          252 DPERLKELIDEMRDAGLKPDTISYNFLMTCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWI  314 (403)
Q Consensus       252 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  314 (403)
                      |.-+..+-+..+...++.|++....+.+++|.+.+|+..|.++++.+..+- .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            444555555556666666777777777777777777777777777666332 22333454443