Citrus Sinensis ID: 015811

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MRHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNTNRG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mrhmhpspppvssfnILLGclaknkhyDTVLSLFKRLnsiglfpdlytYSILINCFCKMGQVSLGFVIFGRILrscfapnvvTFTSLIKGLCAESRIVEAAALFTKLkafgcepnvitYNTLINGLCRTGHTIVALNLFkemtngngeigvvfkpntVTYSIIIDGLCKEGFVDKAKELFLQMKYenlnpnvvTYTSLIHGFCHANDWNEAKGLLIEMVDqgvqpnvvSSNVIMNELckngkmdnASRLLDLMVQcdvrpnaftyntlmdgfcltgKINRVKELFVSMEsmgckhddfsynILINGYCKNKEVEEALSLYnelpfkgikptvvTYNTLFHGLFEIRQAERALKLFVEMqgndvaadtctyrtfidglcvrpqvRFTYarrkgnsgntnrg
Flexible Loop (DISEMBL)
mrhmhpspppVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVrftyarrkgnsgntnrg
Low Complexity Region (SEG)
MRHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNTNRG
Disordered region (IsUnstruct)
*************FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYA************
Disordered Region (DISOPRED)
*****PSP*PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARR***SG*****
Disordered Region (DISEMBL)
***********SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK*********
Disordered Region (DISPRO)
*****PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNTNRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	400	2.2.26 [Sep-21-2011]
Q9LPX2	644	Pentatricopeptide repeat-	yes	no	0.91	0.565	0.367	3e-77
Q9SH26	577	Pentatricopeptide repeat-	no	no	0.94	0.651	0.348	8e-76
Q9SXD8	634	Pentatricopeptide repeat-	no	no	0.91	0.574	0.360	1e-75
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.922	0.579	0.352	6e-75
Q9C8T7	559	Pentatricopeptide repeat-	no	no	0.91	0.651	0.358	8e-75
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.94	0.596	0.348	1e-74
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.91	0.578	0.358	2e-74
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.94	0.594	0.343	3e-74
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.94	0.596	0.343	8e-74
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.91	0.592	0.348	1e-73

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  289 bits (739), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/405 (36%), Positives = 225/405 (55%), Gaps = 41/405 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P V  FN L   +AK K Y+ VL+L K++ S G+   +YT SI+INCFC+  ++S  F  
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC- 127
            G+I++  + P+ V F +L+ GLC E R+ EA  L  ++   G +P +IT NTL+NGLC 
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 128 ----------------------------------RTGHTIVALNLFKEMTNGNGEIGVVF 153
                                             ++G T +A+ L ++M   N       
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN------I 259

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
           K + V YSIIIDGLCK+G +D A  LF +M+ +    +++TY +LI GFC+A  W++   
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAK 319

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+ + + PNVV+ +V+++   K GK+  A +LL  M+Q  + PN  TYN+L+DGFC
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
              ++    ++   M S GC  D  ++NILINGYCK   +++ L L+ E+  +G+    V
Sbjct: 380 KENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           TYNTL  G  +  + E A KLF EM    V  D  +Y+  +DGLC
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1

 Score =  284 bits (727), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/422 (34%), Positives = 233/422 (55%), Gaps = 46/422 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  FN LL  +AK K +D V+SL +++  +G+  +LYTY+ILINCFC+  Q+SL   +
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRI------------------------------- 97
            G++++  + P++VT +SL+ G C   RI                               
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 98  ----VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                EA AL  ++   GC+PN++TY  ++NGLC+ G   +A NL  +M     E     
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE----- 257

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
             N V YS +ID LCK    D A  LF +M+ + + PNV+TY+SLI   C+   W++A  
Sbjct: 258 -ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASR 316

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PNVV+ N +++   K GK+  A +L D M++  + P+ FTY++L++GFC
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  +++  K +F  M S  C  +  +YN LING+CK K ++E + L+ E+  +G+    V
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV-----RPQVRFTYA 388
           TY TL HG F+ R  + A  +F +M  + V  +  TY T +DGLC      +  V F Y 
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496

Query: 389 RR 390
           +R
Sbjct: 497 QR 498

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/405 (36%), Positives = 225/405 (55%), Gaps = 41/405 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  FN LL  +AK K +D V+SL +++  + +   LYTY+ILINCFC+  Q+SL   +
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIV------------------------------ 98
            G++++  + P++VT +SL+ G C   RI                               
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 99  -----EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                EA AL  ++   GC+PN++TY  ++NGLC+ G T +ALNL  +M     E  VV 
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
                 ++ IID LCK   VD A  LF +M+ + + PNVVTY+SLI   C    W++A  
Sbjct: 263 ------FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 316

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PN+V+ N +++   K GK   A +L D M++  + P+ FTYN+L++GFC
Sbjct: 317 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFC 376

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  ++++ K++F  M S  C  D  +YN LI G+CK+K VE+   L+ E+  +G+    V
Sbjct: 377 MHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 436

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           TY TL  GLF     + A K+F +M  + V  D  TY   +DGLC
Sbjct: 437 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  281 bits (719), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 226/411 (54%), Gaps = 42/411 (10%)

Query: 4   MHPSP-PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV 62
           +H  P P V  F+ L   +AK K YD VL+L K++   G+  +LYT SI+INCFC+  ++
Sbjct: 80  IHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKL 139

Query: 63  SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI------------------------- 97
            L F   G+I++  + PN +TF++LI GLC E R+                         
Sbjct: 140 CLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTL 199

Query: 98  ----------VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNG 147
                      EA  L  K+  +GC+PN +TY  ++N +C++G T +A+ L ++M   N 
Sbjct: 200 VNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN- 258

Query: 148 EIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND 207
                 K + V YSIIIDGLCK G +D A  LF +M+ + +  N++TY  LI GFC+A  
Sbjct: 259 -----IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313

Query: 208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT 267
           W++   LL +M+ + + PNVV+ +V+++   K GK+  A  L   M+   + P+  TY +
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373

Query: 268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG 327
           L+DGFC    +++  ++   M S GC  +  ++NILINGYCK   +++ L L+ ++  +G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433

Query: 328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           +    VTYNTL  G  E+ +   A +LF EM    V  +  TY+  +DGLC
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLC 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2

 Score =  281 bits (718), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 225/405 (55%), Gaps = 41/405 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  FN LL  +AK K +D V+SL +++  +G+  +LYTY+ILINCFC+  Q+SL   +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIV------------------------------ 98
            G++++  + P++VT +SL+ G C   RI                               
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 99  -----EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                EA AL  ++   GC+PN++TY  ++NGLC+ G   +A NL  +M     E  VV 
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
                 ++ IID LCK   VD A  LF +M+ + + PNVVTY+SLI   C    W++A  
Sbjct: 188 ------FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PN+V+ N +++   K GK   A +L D M++  + P+ FTYN+L++GFC
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 301

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  ++++ K++F  M S  C  D  +YN LI G+CK+K VE+   L+ E+  +G+    V
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           TY TL  GLF     + A K+F +M  + V  D  TY   +DGLC
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/422 (34%), Positives = 235/422 (55%), Gaps = 46/422 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  F+ LL  +AK   +D V+SL +++ ++G+  + YTYSILINCFC+  Q+ L   +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIVEAA--------------------------- 101
            G++++  + PN+VT +SL+ G C   RI EA                            
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 102 --------ALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                   AL  ++ A GC+P+++TY  ++NGLC+ G T +A NL  +M  G  E GV+ 
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
                 Y+ IIDGLCK   +D A  LF +M+ + + PNVVTY+SLI   C+   W++A  
Sbjct: 259 ------YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + P+V + + +++   K GK+  A +L D MV+  + P+  TY++L++GFC
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  +++  K++F  M S  C  D  +YN LI G+CK K VEE + ++ E+  +G+    V
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV-----RPQVRFTYA 388
           TYN L  GLF+    + A ++F EM  + V  +  TY T +DGLC      +  V F Y 
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 389 RR 390
           +R
Sbjct: 493 QR 494

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  280 bits (715), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/405 (35%), Positives = 226/405 (55%), Gaps = 41/405 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  FN LL  +AK   +D V+SL +R+ ++ +  DLY+Y+ILINCFC+  Q+ L   +
Sbjct: 78  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAAL------------------------- 103
            G++++  + P++VT +SL+ G C   RI EA AL                         
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197

Query: 104 ----------FTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                       ++ A GC+P++ TY T++NGLC+ G   +AL+L K+M  G  E  VV 
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
                 Y+ IID LC    V+ A  LF +M  + + PNVVTY SLI   C+   W++A  
Sbjct: 258 ------YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PNVV+ + +++   K GK+  A +L D M++  + P+ FTY++L++GFC
Sbjct: 312 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 371

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  +++  K +F  M S  C  +  +YN LI G+CK K VEE + L+ E+  +G+    V
Sbjct: 372 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 431

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           TYNTL  GLF+    + A K+F +M  + V  D  TY   +DGLC
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  279 bits (713), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/422 (34%), Positives = 232/422 (54%), Gaps = 46/422 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  FN LL  +AK   ++ V+SL +++ ++G+  DLYTYSI INCFC+  Q+SL   +
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRI------------------------------- 97
             ++++  + P++VT +SL+ G C   RI                               
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 98  ----VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                EA AL  ++   GC+P+++TY T++NGLC+ G   +AL+L K+M  G  E  VV 
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
                 Y+ IIDGLCK   +D A  LF +M  + + P+V TY+SLI   C+   W++A  
Sbjct: 261 ------YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PNVV+ + +++   K GK+  A +L D M++  + P+ FTY++L++GFC
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 374

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  +++  K +F  M S  C  +  +Y+ LI G+CK K VEE + L+ E+  +G+    V
Sbjct: 375 MHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 434

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC-----VRPQVRFTYA 388
           TY TL HG F+ R  + A  +F +M    V  +  TY   +DGLC      +  V F Y 
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494

Query: 389 RR 390
           +R
Sbjct: 495 QR 496

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  277 bits (709), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 145/422 (34%), Positives = 232/422 (54%), Gaps = 46/422 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  F+ LL  +AK   +D V+SL +++ ++G+  +LYTYSILINCFC+  Q+SL   +
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRI------------------------------- 97
             ++++  + P++VT  SL+ G C  +RI                               
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 98  ----VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                EA AL  ++   GC+P+++TY  ++NGLC+ G   +AL+L K+M  G  E     
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE----- 253

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
            P  V Y+ IID LC    V+ A  LF +M  + + PNVVTY SLI   C+   W++A  
Sbjct: 254 -PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PNVV+ + +++   K GK+  A +L D M++  + P+ FTY++L++GFC
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  +++  K +F  M S  C  +  +YN LI G+CK K V+E + L+ E+  +G+    V
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVR-----FTYA 388
           TY TL HG F+ R+ + A  +F +M  + V  D  TY   +DGLC   +V      F Y 
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492

Query: 389 RR 390
           +R
Sbjct: 493 QR 494

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/405 (34%), Positives = 224/405 (55%), Gaps = 41/405 (10%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +  F+ LL  +AK K +D V+S  +++  +G+  +LYTY+I+INC C+  Q+S    I
Sbjct: 63  PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFG----------------- 111
            G++++  + P++VT  SL+ G C  +RI EA AL  ++   G                 
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182

Query: 112 ------------------CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF 153
                             C+P+++TY  +INGLC+ G   +ALNL  +M  G  E  VV 
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242

Query: 154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG 213
                 YS +ID LCK   VD A  LF +M  + + P+V TY+SLI   C+   W++A  
Sbjct: 243 ------YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 296

Query: 214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           LL +M+++ + PNVV+ N +++   K GK+  A +L D M+Q  + PN  TYN+L++GFC
Sbjct: 297 LLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFC 356

Query: 274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV 333
           +  +++  +++F  M S  C  D  +YN LING+CK K+V + + L+ ++  +G+    V
Sbjct: 357 MHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416

Query: 334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           TY TL HG F+    + A  +F +M  + V  +  TY T +DGLC
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 461

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
359479583	627	PREDICTED: pentatricopeptide repeat-cont	0.935	0.596	0.546	1e-115
449529622	618	PREDICTED: pentatricopeptide repeat-cont	0.942	0.610	0.510	1e-105
449520325	605	PREDICTED: pentatricopeptide repeat-cont	0.937	0.619	0.484	1e-101
449520323	605	PREDICTED: pentatricopeptide repeat-cont	0.937	0.619	0.492	1e-100
255559961	628	pentatricopeptide repeat-containing prot	0.917	0.584	0.480	5e-96
449462477	597	PREDICTED: pentatricopeptide repeat-cont	0.917	0.614	0.478	8e-95
449462479	580	PREDICTED: pentatricopeptide repeat-cont	0.875	0.603	0.449	2e-88
147768816	653	hypothetical protein VITISV_031897 [Viti	0.972	0.595	0.409	4e-85
225452994	588	PREDICTED: putative pentatricopeptide re	0.972	0.661	0.409	6e-85
224092696	597	predicted protein [Populus trichocarpa]	0.93	0.623	0.407	3e-83

>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/375 (54%), Positives = 263/375 (70%), Gaps = 1/375 (0%)

Query: 4   MHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVS 63
           M P+PP +SSFN LLG +AK K Y  V+SL+KR++ IGL PD  T +ILINC+C + +V 
Sbjct: 86  MQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVD 144

Query: 64  LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI 123
            G  + G +LR   +PN VTFTSL+KGLC  SRI EA  L  K+   G  PNV+TY TL+
Sbjct: 145 FGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLL 204

Query: 124 NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM 183
           NGLC TG+T++A+ L +EM NGNG  GV  KPN V Y  IID LCK+G +DK KELFL+M
Sbjct: 205 NGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEM 264

Query: 184 KYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKM 243
           K   ++P+VV Y+S+IHG CH   W  AKGL  EMVD+GV PNVV+ NV+++ LCK GKM
Sbjct: 265 KGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKM 324

Query: 244 DNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNIL 303
           + A+ LL LM+Q    P+ FTYNTL+DGFCL G+I+  ++LFVSMES G + D  SYN+L
Sbjct: 325 EEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVL 384

Query: 304 INGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDV 363
           INGYCK+  + EA  LY E+  K I PTV+TYNTL  GLF   +   A  LF EM+ +D+
Sbjct: 385 INGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDL 444

Query: 364 AADTCTYRTFIDGLC 378
             ++CTY   +DGLC
Sbjct: 445 TPESCTYNILLDGLC 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 257/378 (67%), Gaps = 1/378 (0%)

Query: 1   MRHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60
           M   HP PP +SSFN LLG LAK  HY  + SL+  +   GL PDL+T SIL NC C + 
Sbjct: 82  MMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVN 140

Query: 61  QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120
           +VS        ILR  + PNVVT+T+LIKGLC E RI EA  LF +++  GC PN +TY 
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYG 200

Query: 121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180
           TLI GLC+TG+  +AL L KEM N   + GV  KP  +TYSIIIDGLCK G  D+AKELF
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELF 260

Query: 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240
            +MK + + P+V++Y++LIHGFC A  W+++K L  EMVDQGVQP++V+ +V+++ LCK 
Sbjct: 261 EEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKE 320

Query: 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300
           GK+  A +LL++M+Q  + PN  TYN+L+DGFC+ G +N  +ELF+SM S G + D+ SY
Sbjct: 321 GKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380

Query: 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360
             LINGYCK  +V+EA++LYNE+   G  P V TY TL  GLF+  +   A KLF  M+ 
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKT 440

Query: 361 NDVAADTCTYRTFIDGLC 378
             V+A++  Y  F+DGLC
Sbjct: 441 YGVSANSQIYGIFLDGLC 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/376 (48%), Positives = 258/376 (68%), Gaps = 1/376 (0%)

Query: 4   MHPSP-PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV 62
           M  +P P +SSFN LL  LAK KHY  V SL+ ++   GL  D  T +IL+NC C + ++
Sbjct: 61  MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRL 120

Query: 63  SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122
             GF  F  ILR  ++PN+VT+ +LIKGLC E RI EA  LF +++  GC P+V+TY TL
Sbjct: 121 REGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTL 180

Query: 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182
           I GLC TG+  +AL L +EM N      +  KPN +TY+II+DGLCK G  D+AK+LF +
Sbjct: 181 IKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEE 240

Query: 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242
           MK + + P++++Y SLIHGFC A  W E+K LL EM+DQG+QP++V+ NV+++ LCK GK
Sbjct: 241 MKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGK 300

Query: 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302
           +  A +LL +M++  + P+  TYN+L++GFC+ G +N  +ELFVSM S GC+ D  SYN+
Sbjct: 301 VIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNV 360

Query: 303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362
           LINGY K  +VEEA+ LYNE+   G +P V+TY++L  G+F   + + A KLF  M+ + 
Sbjct: 361 LINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 420

Query: 363 VAADTCTYRTFIDGLC 378
           +A ++ TY  F+DGLC
Sbjct: 421 IAENSYTYGIFLDGLC 436

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/376 (49%), Positives = 250/376 (66%), Gaps = 1/376 (0%)

Query: 4   MHPSP-PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV 62
           M+ +P PP+SSF  LL  LAK KHY  V  L+ ++   G+ PD  T +IL+NC C + +V
Sbjct: 88  MYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRV 147

Query: 63  SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122
             G  +   ILR  + P++VT+T+LIKGLC E RI +AA LFT+++  GC PN ITY TL
Sbjct: 148 GEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTL 207

Query: 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182
           + GLCRTG+  +AL L +EM N +   G+ FKP  ++YSIIID LCK+   D+A++LF +
Sbjct: 208 MKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEE 267

Query: 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242
           MK + + P V++YTSLIHGFC    W EAK L  EMV+QGVQPNVV+ NV+++ LCK GK
Sbjct: 268 MKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 327

Query: 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302
           +  A  LL++M+Q  + PN  TYN+L++GFCL G +N  +ELFVSM S GC+ D   Y +
Sbjct: 328 VIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTV 387

Query: 303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362
           LINGYCK  +VEEA+ LYN +   G +P V TY  L  GLF+  +   A KLF  M+   
Sbjct: 388 LINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYG 447

Query: 363 VAADTCTYRTFIDGLC 378
           +  D   Y  F++GLC
Sbjct: 448 IPGDLYIYGIFLNGLC 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 183/381 (48%), Positives = 252/381 (66%), Gaps = 14/381 (3%)

Query: 1   MRHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60
           M HM  +P  +S FN L G LAK K Y  V+S+  R+NSIGL  +  + +IL+NC C + 
Sbjct: 98  MIHMQTTPA-LSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVK 156

Query: 61  QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120
           +V  GFV+FG ILR  + PN  TFT+L+KGLC E +I EA  +F  +  F C P+ IT  
Sbjct: 157 RVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCG 216

Query: 121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180
            LI+GLCRTG+T  AL L + M NGN + G+  KP  V+YS IID LCK+G V++AKE F
Sbjct: 217 VLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFF 276

Query: 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240
           ++MK + + PNVVTYTSL+HG C A++W EAK L IEMVD G+ P+VV+ +V++  LCK 
Sbjct: 277 VEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKV 336

Query: 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300
           GK+  AS L DLMVQ  V P+  TYN L++G+CL G ++  K++F+SM +  C+HD  SY
Sbjct: 337 GKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSY 396

Query: 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360
           +IL+  YCK+ EV  A+ LY E+  +GI+PTV+TY+          +   A KLF E+Q 
Sbjct: 397 SILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS----------KVGDARKLFGEIQF 446

Query: 361 NDVAADTCTYR---TFIDGLC 378
            D+  D+ +Y     ++DGLC
Sbjct: 447 QDMVLDSISYSIYNVYLDGLC 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 180/376 (47%), Positives = 246/376 (65%), Gaps = 9/376 (2%)

Query: 4   MHPSP-PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV 62
           M+ +P PP+SSF  LL  LAK KHY  V  L+ ++   G+ PD  T +IL+NC C + +V
Sbjct: 88  MYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRV 147

Query: 63  SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122
             G  +   ILR  + P++VT+T+LIKGLC E RI +AA LFT+++  GC PN ITY TL
Sbjct: 148 GEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTL 207

Query: 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182
           + GLCRTG+  +AL L +EM N +   G+ FKP  ++YSIIID LCK+   D+A++LF +
Sbjct: 208 MKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEE 267

Query: 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242
           MK + + P V++YTSL+        W EAK L  EMV+QGVQPNVV+ NV+++ LCK GK
Sbjct: 268 MKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 319

Query: 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302
           +  A  LL++M+Q  + PN  TYN+L++GFCL G +N  +ELFVSM S GC+ D   Y +
Sbjct: 320 VIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTV 379

Query: 303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362
           LINGYCK  +VEEA+ LYN +   G +P V TY  L  GLF+  +   A KLF  M+   
Sbjct: 380 LINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYG 439

Query: 363 VAADTCTYRTFIDGLC 378
           +  D   Y  F++GLC
Sbjct: 440 IPGDLYIYGIFLNGLC 455

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/376 (44%), Positives = 240/376 (63%), Gaps = 26/376 (6%)

Query: 4   MHPSP-PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV 62
           M  +P P +SSFN LL  LAK KHY  V SL+ ++   GL  D  T +IL+NC C + ++
Sbjct: 61  MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRL 120

Query: 63  SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122
             GF  F  ILR  ++PN+VT+ +LIKGLC E RI EA  LF +++  GC P+V+TY TL
Sbjct: 121 REGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTL 180

Query: 123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182
           I GLC TG+  +AL L +EM N      +  KPN +TY+II+DGLCK G  D+AK+LF +
Sbjct: 181 IKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEE 240

Query: 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242
           MK + + PN                         EM+DQG+QP++V+ NV+++ LCK GK
Sbjct: 241 MKTQGMIPN-------------------------EMLDQGLQPDMVTFNVLIDTLCKEGK 275

Query: 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI 302
           +  A +LL +M++  + P+  TYN+L++GFC+ G +N  +ELFVSM S GC+ D  SYN+
Sbjct: 276 VIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNV 335

Query: 303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND 362
           LINGY K  +VEEA+ LYNE+   G +P V+TY++L  G+F   + + A KLF  M+ + 
Sbjct: 336 LINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHG 395

Query: 363 VAADTCTYRTFIDGLC 378
           +A ++ TY  F+DGLC
Sbjct: 396 IAENSYTYGIFLDGLC 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 162/396 (40%), Positives = 235/396 (59%), Gaps = 7/396 (1%)

Query: 2   RHMHPSPPPVS-SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60
           R +H  PPP +  FN LL  +AK KH+ T+LSL ++++S G+ PD+YT +I+IN  C + 
Sbjct: 60  RMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLN 119

Query: 61  QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120
           +V   F    +IL+    P+  TFT+LI+GLC E +I EA  LF K+   G +PNV+TY 
Sbjct: 120 RVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYG 179

Query: 121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180
           TLINGLC+ G+T  A+ L + M  GN +      PN V +S +ID LCK+  V +A  +F
Sbjct: 180 TLINGLCKVGNTSAAIRLLRSMEQGNCQ------PNVVVFSTLIDSLCKDRQVTEAFNIF 233

Query: 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240
            +M  + ++PN+VTY SLIHG C   +W     L+ EMVD  + P+V + N +++ LCK 
Sbjct: 234 SEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKE 293

Query: 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300
           G +  A  ++D+M+   V PN  TYN LMDG CL  +++   ++F +M    C  +  SY
Sbjct: 294 GMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISY 353

Query: 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360
           N LINGYCK + V++A+ L+ E+  + + P  VTYNTL HGL  + + + A+ LF EM  
Sbjct: 354 NTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVA 413

Query: 361 NDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN 396
                D  TYRT  D LC    +    A  K   G+
Sbjct: 414 RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGS 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera]

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 162/396 (40%), Positives = 235/396 (59%), Gaps = 7/396 (1%)

Query: 2   RHMHPSPPPVS-SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60
           R +H  PPP +  FN LL  +AK KH+ T+LSL ++++S G+ PD+YT +I+IN  C + 
Sbjct: 60  RMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLN 119

Query: 61  QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120
           +V   F    +IL+    P+  TFT+LI+GLC E +I EA  LF K+   G +PNV+TY 
Sbjct: 120 RVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYG 179

Query: 121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180
           TLINGLC+ G+T  A+ L + M  GN +      PN V +S +ID LCK+  V +A  +F
Sbjct: 180 TLINGLCKVGNTSAAIRLLRSMEQGNCQ------PNVVVFSTLIDSLCKDRQVTEAFNIF 233

Query: 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240
            +M  + ++PN+VTY SLIHG C   +W     L+ EMVD  + P+V + N +++ LCK 
Sbjct: 234 SEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKE 293

Query: 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300
           G +  A  ++D+M+   V PN  TYN LMDG CL  +++   ++F +M    C  +  SY
Sbjct: 294 GMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISY 353

Query: 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360
           N LINGYCK + V++A+ L+ E+  + + P  VTYNTL HGL  + + + A+ LF EM  
Sbjct: 354 NTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVA 413

Query: 361 NDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN 396
                D  TYRT  D LC    +    A  K   G+
Sbjct: 414 RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGS 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa] gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/378 (40%), Positives = 227/378 (60%), Gaps = 6/378 (1%)

Query: 1   MRHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG 60
           M H  P P  +    +L   +   ++YD V+SL K++  +GL P++YT SI +NCFC++ 
Sbjct: 83  MLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQ 142

Query: 61  QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120
           +V LGF +  ++++    P +VTFT+LI GLC      +A  LF  + A GC+P+V TYN
Sbjct: 143 RVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYN 202

Query: 121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF 180
           T+INGLC+ G T  A  L K+M     +      PN VTYS +ID LC++  V++A ++F
Sbjct: 203 TIINGLCKIGETAAAAGLLKKMEEAGCQ------PNMVTYSTLIDSLCRDRLVNEALDIF 256

Query: 181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN 240
             MK + ++P++ TYTSLI G C  + W EA  LL EM    + P++V+ NV+++  CK 
Sbjct: 257 SYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKE 316

Query: 241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY 300
           GK+  A  +L  M +  V PN  TY++LM G+ L   +   ++LF  M + GCK + FSY
Sbjct: 317 GKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSY 376

Query: 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG 360
           NILINGYCK K ++EA+ L+NE+  +G+ P  V+YNTL HG  ++ +   A  LF  M  
Sbjct: 377 NILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCT 436

Query: 361 NDVAADTCTYRTFIDGLC 378
           N    D  TY   +DG C
Sbjct: 437 NGNLPDLFTYSILLDGFC 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.9	0.586	0.352	3.1e-67
TAIR|locus:2203916	634	AT1G62590 [Arabidopsis thalian	0.9	0.567	0.360	5.1e-67
TAIR|locus:2031301	577	AT1G63400 [Arabidopsis thalian	0.9	0.623	0.349	8.2e-67
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.9	0.572	0.366	1.1e-66
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.9	0.571	0.352	5.8e-66
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.9	0.571	0.352	1.2e-65
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.9	0.581	0.355	1.1e-64
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.9	0.565	0.341	1.4e-64
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.905	0.562	0.339	1.8e-64
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.91	0.664	0.356	4.7e-64

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 129/366 (35%), Positives = 213/366 (58%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             ++NI++ CL +       L++  ++  +G  P + T + L+N FC   ++S    +  ++
Sbjct:   102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
             +   + P+ VTFT+L+ GL   ++  EA AL  ++   GC+P+++TY  +INGLC+ G  
Sbjct:   162 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEP 221

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +ALNL  +M  G  E  VV       YS +ID LCK   VD A  LF +M  + + P+V
Sbjct:   222 DLALNLLNKMEKGKIEADVVI------YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
              TY+SLI   C+   W++A  LL +M+++ + PNVV+ N +++   K GK+  A +L D 
Sbjct:   276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M+Q  + PN  TYN+L++GFC+  +++  +++F  M S  C  D  +YN LING+CK K+
Sbjct:   336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             V + + L+ ++  +G+    VTY TL HG F+    + A  +F +M  + V  +  TY T
Sbjct:   396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   456 LLDGLC 461

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 132/366 (36%), Positives = 212/366 (57%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             ++NIL+ C  +       L+L  ++  +G  P + T S L+N +C   ++S    +  ++
Sbjct:   122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
             +   + P+ +TFT+LI GL   ++  EA AL  ++   GC+PN++TY  ++NGLC+ G T
Sbjct:   182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +ALNL  +M     E  VV       ++ IID LCK   VD A  LF +M+ + + PNV
Sbjct:   242 DLALNLLNKMEAAKIEADVVI------FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             VTY+SLI   C    W++A  LL +M+++ + PN+V+ N +++   K GK   A +L D 
Sbjct:   296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M++  + P+ FTYN+L++GFC+  ++++ K++F  M S  C  D  +YN LI G+CK+K 
Sbjct:   356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             VE+   L+ E+  +G+    VTY TL  GLF     + A K+F +M  + V  D  TY  
Sbjct:   416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   476 LLDGLC 481

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 128/366 (34%), Positives = 214/366 (58%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             ++NIL+ C  +       L+L  ++  +G  P + T S L+N +C   ++S    +  ++
Sbjct:   122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
             +   + P+ +TFT+LI GL   ++  EA AL  ++   GC+PN++TY  ++NGLC+ G  
Sbjct:   182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +A NL  +M     E   + + N V YS +ID LCK    D A  LF +M+ + + PNV
Sbjct:   242 DLAFNLLNKM-----EAAKI-EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNV 295

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             +TY+SLI   C+   W++A  LL +M+++ + PNVV+ N +++   K GK+  A +L D 
Sbjct:   296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M++  + P+ FTY++L++GFC+  +++  K +F  M S  C  +  +YN LING+CK K 
Sbjct:   356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             ++E + L+ E+  +G+    VTY TL HG F+ R  + A  +F +M  + V  +  TY T
Sbjct:   416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   476 LLDGLC 481

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 134/366 (36%), Positives = 212/366 (57%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             S+NIL+ C  +       L++  ++  +G  PD+ T S L+N +C   ++S    +  ++
Sbjct:   117 SYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
                 + PN VTF +LI GL   ++  EA AL  ++ A GC+P++ TY T++NGLC+ G  
Sbjct:   177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +AL+L K+M  G  E  VV       Y+ IID LC    V+ A  LF +M  + + PNV
Sbjct:   237 DLALSLLKKMEKGKIEADVVI------YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             VTY SLI   C+   W++A  LL +M+++ + PNVV+ + +++   K GK+  A +L D 
Sbjct:   291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M++  + P+ FTY++L++GFC+  +++  K +F  M S  C  +  +YN LI G+CK K 
Sbjct:   351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             VEE + L+ E+  +G+    VTYNTL  GLF+    + A K+F +M  + V  D  TY  
Sbjct:   411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   471 LLDGLC 476

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 129/366 (35%), Positives = 216/366 (59%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             +++IL+ C  +       L++  ++  +G  P++ T S L+N +C   ++S    +  ++
Sbjct:   118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
               + + PN VTF +LI GL   ++  EA AL  ++ A GC+P+++TY  ++NGLC+ G T
Sbjct:   178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +A NL  +M  G  E GV+       Y+ IIDGLCK   +D A  LF +M+ + + PNV
Sbjct:   238 DLAFNLLNKMEQGKLEPGVLI------YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             VTY+SLI   C+   W++A  LL +M+++ + P+V + + +++   K GK+  A +L D 
Sbjct:   292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             MV+  + P+  TY++L++GFC+  +++  K++F  M S  C  D  +YN LI G+CK K 
Sbjct:   352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             VEE + ++ E+  +G+    VTYN L  GLF+    + A ++F EM  + V  +  TY T
Sbjct:   412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   472 LLDGLC 477

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 129/366 (35%), Positives = 213/366 (58%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             +++IL+ C  +       L++  ++  +G  PD+ T + L+N FC   ++S    + G++
Sbjct:   118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
             +   + P+  TF +LI GL   +R  EA AL  ++   GC+P+++TY  ++NGLC+ G  
Sbjct:   178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +AL+L K+M  G  E GVV       Y+ IID LC    V+ A  LF +M  + + PNV
Sbjct:   238 DLALSLLKKMEQGKIEPGVVI------YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 291

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             VTY SLI   C+   W++A  LL +M+++ + PNVV+ + +++   K GK+  A +L D 
Sbjct:   292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M++  + P+ FTY++L++GFC+  +++  K +F  M S  C  +  +YN LI G+CK K 
Sbjct:   352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             V+E + L+ E+  +G+    VTY TL HG F+ R+ + A  +F +M  + V  D  TY  
Sbjct:   412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   472 LLDGLC 477

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 130/366 (35%), Positives = 211/366 (57%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             +  I++ C  + K      S+  R   +G  PD  T+S L+N FC  G+VS    +  R+
Sbjct:   107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
             +     P++VT ++LI GLC + R+ EA  L  ++  +G +P+ +TY  ++N LC++G++
Sbjct:   167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +AL+LF++M   N       K + V YSI+ID LCK+G  D A  LF +M+ + +  +V
Sbjct:   227 ALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             VTY+SLI G C+   W++   +L EM+ + + P+VV+ + +++   K GK+  A  L + 
Sbjct:   281 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M+   + P+  TYN+L+DGFC    ++   ++F  M S GC+ D  +Y+ILIN YCK K 
Sbjct:   341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             V++ + L+ E+  KG+ P  +TYNTL  G  +  +   A +LF EM    V     TY  
Sbjct:   401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   461 LLDGLC 466

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 125/366 (34%), Positives = 207/366 (56%)

Query:    13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
             + +I++ C  + +      S   ++  +G  P+  T+S LIN  C  G+VS    +  R+
Sbjct:   125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184

Query:    73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 132
             +     P+++T  +L+ GLC   +  EA  L  K+  +GC+PN +TY  ++N +C++G T
Sbjct:   185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244

Query:   133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
              +A+ L ++M   N       K + V YSIIIDGLCK G +D A  LF +M+ + +  N+
Sbjct:   245 ALAMELLRKMEERN------IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298

Query:   193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL 252
             +TY  LI GFC+A  W++   LL +M+ + + PNVV+ +V+++   K GK+  A  L   
Sbjct:   299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358

Query:   253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE 312
             M+   + P+  TY +L+DGFC    +++  ++   M S GC  +  ++NILINGYCK   
Sbjct:   359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418

Query:   313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRT 372
             +++ L L+ ++  +G+    VTYNTL  G  E+ +   A +LF EM    V  +  TY+ 
Sbjct:   419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query:   373 FIDGLC 378
              +DGLC
Sbjct:   479 LLDGLC 484

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 125/368 (33%), Positives = 208/368 (56%)

Query:    11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFG 70
             + + +I++ C  + +      S   ++  +G  PD   ++ L+N  C   +VS    +  
Sbjct:   123 IYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVD 182

Query:    71 RILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130
             R++     P ++T  +L+ GLC   ++ +A  L  ++   G +PN +TY  ++N +C++G
Sbjct:   183 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSG 242

Query:   131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP 190
              T +A+ L ++M   N       K + V YSIIIDGLCK+G +D A  LF +M+ +    
Sbjct:   243 QTALAMELLRKMEERN------IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKA 296

Query:   191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLL 250
             +++TY +LI GFC+A  W++   LL +M+ + + PNVV+ +V+++   K GK+  A +LL
Sbjct:   297 DIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLL 356

Query:   251 DLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN 310
               M+Q  + PN  TYN+L+DGFC   ++    ++   M S GC  D  ++NILINGYCK 
Sbjct:   357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKA 416

Query:   311 KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTY 370
               +++ L L+ E+  +G+    VTYNTL  G  +  + E A KLF EM    V  D  +Y
Sbjct:   417 NRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSY 476

Query:   371 RTFIDGLC 378
             +  +DGLC
Sbjct:   477 KILLDGLC 484

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 132/370 (35%), Positives = 214/370 (57%)

Query:     9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
             P +  FN LL  + K K YD V+SL K++  +G+  DLYT++I+INCFC   QVSL   I
Sbjct:    83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query:    69 FGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128
              G++L+  + P+ VT  SL+ G C  +R+ +A +L  K+   G +P+++ YN +I+ LC+
Sbjct:   143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query:   129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL 188
             T     A + FKE+       G+  +PN VTY+ +++GLC       A  L   M  + +
Sbjct:   203 TKRVNDAFDFFKEIERK----GI--RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256

Query:   189 NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248
              PNV+TY++L+  F       EAK L  EMV   + P++V+ + ++N LC + ++D A++
Sbjct:   257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316

Query:   249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC 308
             + DLMV      +  +YNTL++GFC   ++    +LF  M   G   +  +YN LI G+ 
Sbjct:   317 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376

Query:   309 KNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC 368
             +  +V++A   ++++ F GI P + TYN L  GL +  + E+AL +F +MQ  ++  D  
Sbjct:   377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436

Query:   369 TYRTFIDGLC 378
             TY T I G+C
Sbjct:   437 TYTTVIRGMC 446

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023872001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-37
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-18
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-17
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-15
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-09
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	6e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-07
pfam01535	31	pfam01535, PPR, PPR repeat	8e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	6e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	7e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	9e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004
pfam01535	31	pfam01535, PPR, PPR repeat	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  144 bits (364), Expect = 2e-37
 Identities = 92/381 (24%), Positives = 172/381 (45%), Gaps = 23/381 (6%)

Query: 9   PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI 68
           P +S+FN+L+   A ++  D  L + + +   GL  D   Y+ LI+   K G+V   F +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 69  FGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC---------EPNVITY 119
           F  ++ +    NV TF +LI G CA +  V         KAFG          +P+ + +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDG-CARAGQVA--------KAFGAYGIMRSKNVKPDRVVF 545

Query: 120 NTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKEL 179
           N LI+   ++G    A ++  EM      I     P+ +T   ++      G VD+AKE+
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPI----DPDHITVGALMKACANAGQVDRAKEV 601

Query: 180 FLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239
           +  +   N+      YT  ++      DW+ A  +  +M  +GV+P+ V  + +++    
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661

Query: 240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS 299
            G +D A  +L    +  ++    +Y++LM          +  EL+  ++S+  +    +
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721

Query: 300 YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359
            N LI   C+  ++ +AL + +E+   G+ P  +TY+ L         A+  L L  + +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781

Query: 360 GNDVAADTCTYRTFIDGLCVR 380
            + +  +    R  I GLC+R
Sbjct: 782 EDGIKPNLVMCRC-ITGLCLR 801

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 77.1 bits (191), Expect = 3e-18
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH 204
           P+ VTY+ +IDG CK+G V++A +LF +MK   + PNV TY+ LI G C 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 91/392 (23%), Positives = 144/392 (36%), Gaps = 98/392 (25%)

Query: 17  LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS- 75
           L+   AK+   D +  +F  + + G+  +++T+  LI+   + GQV+  F  +G I+RS 
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSK 536

Query: 76  CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-----PNVITYNTLINGLCRTG 130
              P+ V F +LI   C +S  V+ A  F  L     E     P+ IT   L+      G
Sbjct: 537 NVKPDRVVFNALISA-CGQSGAVDRA--FDVLAEMKAETHPIDPDHITVGALMKACANAG 593

Query: 131 -----------------------HTIV------------ALNLFKEMTNGNGEIGV---- 151
                                  +TI             AL+++ +M     + GV    
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK----KKGVKPDE 649

Query: 152 VF-----------------------------KPNTVTYSIIIDGLCKEGFVDKAKELFLQ 182
           VF                             K  TV+YS ++          KA EL+  
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709

Query: 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242
           +K   L P V T  +LI   C  N   +A  +L EM   G+ PN ++ ++++    +   
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769

Query: 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT--GKINRVKELFVSMESMGCKHDDFSY 300
            D    LL    +  ++PN      +  G CL    K   + E  VS +S          
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSG--------- 819

Query: 301 NILINGYCKNKEVEEALSLYNELPFKGIKPTV 332
              I    +NK    AL +Y E    G  PT+
Sbjct: 820 RPQI----ENKWTSWALMVYRETISAGTLPTM 847

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 77/360 (21%), Positives = 155/360 (43%), Gaps = 43/360 (11%)

Query: 31  LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG 90
           L LF  +  + + PDL T + +I+    +G   LG  + G ++++ FA +V    SLI+ 
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332

Query: 91  LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM-------- 142
             +     EA  +F++++      + +++  +I+G  + G    AL  +  M        
Sbjct: 333 YLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

Query: 143 ------------TNGNGEIGVVF-----KPNTVTYSII----IDGLCKEGFVDKAKELFL 181
                         G+ ++GV       +   ++Y ++    I+   K   +DKA E+F 
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448

Query: 182 QMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG 241
            +       +V+++TS+I G    N   EA     +M+   ++PN V+    ++   + G
Sbjct: 449 NIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIG 503

Query: 242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYN 301
            +     +   +++  +  + F  N L+D +   G++N     F S      + D  S+N
Sbjct: 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-----HEKDVVSWN 558

Query: 302 ILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGN 361
           IL+ GY  + +   A+ L+N +   G+ P  VT+ +L           + L+ F  M+  
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.9 bits (175), Expect = 7e-16
 Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 6/56 (10%)

Query: 114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK 169
           P+V+TYNTLI+G C+ G    AL LF EM           KPN  TYSI+IDGLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.1 bits (173), Expect = 1e-15
 Identities = 27/47 (57%), Positives = 34/47 (72%)

Query: 296 DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL 342
           D  +YN LI+GYCK  +VEEAL L+NE+  +GIKP V TY+ L  GL
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 69.7 bits (172), Expect = 2e-15
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 260 PNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCK 309
           P+  TYNTL+DG+C  GK+    +LF  M+  G K + ++Y+ILI+G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 69.7 bits (172), Expect = 2e-15
 Identities = 24/50 (48%), Positives = 36/50 (72%)

Query: 79  PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128
           P+VVT+ +LI G C + ++ EA  LF ++K  G +PNV TY+ LI+GLC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 8e-15
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 190 PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK 239
           P+VVTY +LI G+C      EA  L  EM  +G++PNV + +++++ LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 9e-15
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 225 PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC 273
           P+VV+ N +++  CK GK++ A +L + M +  ++PN +TY+ L+DG C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 83/351 (23%), Positives = 151/351 (43%), Gaps = 20/351 (5%)

Query: 11  VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFG 70
           + S+N+L+G  AK  ++D  L L+ R+   G+ PD+YT+  ++     +  ++ G  +  
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211

Query: 71  RILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130
            ++R  F  +V    +LI        +V A  +F ++    C    I++N +I+G    G
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENG 267

Query: 131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP 190
             +  L LF  M        +   P+ +T + +I      G     +E+   +       
Sbjct: 268 ECLEGLELFFTM------RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321

Query: 191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLL 250
           +V    SLI  +     W EA+ +   M  +    + VS   +++   KNG  D A    
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377

Query: 251 DLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN 310
            LM Q +V P+  T  +++      G ++   +L    E  G        N LI  Y K 
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437

Query: 311 KEVEEALSLYNELPFKGIKPTVVTYNTLFHGL-FEIRQAERALKLFVEMQG 360
           K +++AL +++ +P K     V+++ ++  GL    R  E AL  F +M  
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFE-ALIFFRQMLL 483

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 62.0 bits (152), Expect = 8e-13
 Identities = 24/49 (48%), Positives = 29/49 (59%)

Query: 330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC 378
           P VVTYNTL  G  +  + E ALKLF EM+   +  +  TY   IDGLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 78/364 (21%), Positives = 147/364 (40%), Gaps = 35/364 (9%)

Query: 13  SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRI 72
           S+  ++G L    +Y    +LF+ +   G   +  T+ +++          LG    G+ 
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR-----ASAGLGSARAGQQ 245

Query: 73  LRSCFAPNVV---TFTS--LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127
           L  C     V   TF S  LI        I +A  +F  +     E   + +N+++ G  
Sbjct: 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301

Query: 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN 187
             G++  AL L+ EM +    I      +  T+SI+I    +   ++ AK+    +    
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSI------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355

Query: 188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247
              ++V  T+L+  +       +A+ +   M  +    N++S N ++     +G+   A 
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAV 411

Query: 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM-ESMGCKHDDFSYNILING 306
            + + M+   V PN  T+  ++     +G   +  E+F SM E+   K     Y  +I  
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471

Query: 307 YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLF-----HGLFEIRQ--AERALKLFVEMQ 359
             +   ++EA ++    PF   KPTV  +  L      H   E+ +  AE+   +  E  
Sbjct: 472 LGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528

Query: 360 GNDV 363
            N V
Sbjct: 529 NNYV 532

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 64/351 (18%), Positives = 136/351 (38%), Gaps = 19/351 (5%)

Query: 21  LAKNKHYDTVLSLFKRLNSIGLFP-DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP 79
           L     +   L LF+ L +   F     TY  L+     +  +     ++  +  S F P
Sbjct: 97  LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156

Query: 80  NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLF 139
           +      ++        +++A  LF ++     E N+ ++ T+I GL   G+   A  LF
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALF 212

Query: 140 KEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLI 199
           +EM                T+ +++      G     ++L   +    +  +     +LI
Sbjct: 213 REM------WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266

Query: 200 HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR 259
             +    D  +A+ +     D   +   V+ N ++     +G  + A  L   M    V 
Sbjct: 267 DMYSKCGDIEDARCVF----DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322

Query: 260 PNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSL 319
            + FT++ ++  F     +   K+    +   G   D  +   L++ Y K   +E+A ++
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382

Query: 320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTY 370
           ++ +P K +    +++N L  G     +  +A+++F  M    VA +  T+
Sbjct: 383 FDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.3 bits (137), Expect = 9e-11
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC 92
          PD+ TY+ LI+ +CK G+V     +F  + +    PNV T++ LI GLC
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 11  VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFG 70
             ++N +L   A + + +  L L+  +   G+  D +T+SI+I  F ++  +        
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349

Query: 71  RILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 130
            ++R+ F  ++V  T+L+       R+ +A  +F ++       N+I++N LI G    G
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHG 405

Query: 131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM-KYENLN 189
               A+ +F+ M       GV   PN VT+  ++      G  ++  E+F  M +   + 
Sbjct: 406 RGTKAVEMFERMIAE----GVA--PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459

Query: 190 PNVVTYTSLIHGF 202
           P  + Y  +I   
Sbjct: 460 PRAMHYACMIELL 472

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 82/372 (22%), Positives = 151/372 (40%), Gaps = 52/372 (13%)

Query: 11  VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY-SILINCFCKMGQVSLGFVIF 69
           VS   ++ G   KN   D  L  +  +    + PD  T  S+L  C C +G + +G  + 
Sbjct: 355 VSWTAMISGY-EKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC-LGDLDVGVKLH 412

Query: 70  GRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEP--NVITYNTLINGLC 127
               R      VV   +LI+ + ++ + ++ A     L+ F   P  +VI++ ++I GL 
Sbjct: 413 ELAERKGLISYVVVANALIE-MYSKCKCIDKA-----LEVFHNIPEKDVISWTSIIAGLR 466

Query: 128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKE-----LFLQ 182
                  AL  F++M      +  + KPN+VT    +    + G +   KE     L   
Sbjct: 467 LNNRCFEALIFFRQM------LLTL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519

Query: 183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK 242
           + ++   PN     +L+  +      N A            + +VVS N+++     +GK
Sbjct: 520 IGFDGFLPN-----ALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGK 569

Query: 243 MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS--- 299
              A  L + MV+  V P+  T+ +L+     +G + +  E F SME      + +S   
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME------EKYSITP 623

Query: 300 ----YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL---FEIRQAERAL 352
               Y  +++   +  ++ EA +  N++P   I P    +  L +       +   E A 
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAA 680

Query: 353 KLFVEMQGNDVA 364
           +   E+  N V 
Sbjct: 681 QHIFELDPNSVG 692

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 9  PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK 58
          P V ++N L+    K    +  L LF  +   G+ P++YTYSILI+  CK
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 55.4 bits (135), Expect = 2e-10
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 110 FGCEPNVITYNTLINGLCRTGHTIVALNLFKEM 142
            G +P+V+TYNTLI+GLCR G    A+ L  EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 54.3 bits (132), Expect = 3e-10
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 153 FKPNTVTYSIIIDGLCKEGFVDKAKELFLQMK 184
            KP+ VTY+ +IDGLC+ G VD+A EL  +M+
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 2/178 (1%)

Query: 188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS 247
            NP + T+  L+     + D + A  +L  + + G++ +      +++   K+GK+D   
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492

Query: 248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGY 307
            +   MV   V  N  T+  L+DG    G++ +    +  M S   K D   +N LI+  
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552

Query: 308 CKNKEVEEALSLYNEL--PFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDV 363
            ++  V+ A  +  E+      I P  +T   L        Q +RA +++  +   ++
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 67/327 (20%), Positives = 135/327 (41%), Gaps = 20/327 (6%)

Query: 10  PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIF 69
           P S+++ L+      K    V +++  + S G  PD Y      N    M  V  G +I 
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM----NRVLLM-HVKCGMLID 176

Query: 70  GR-ILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR 128
            R +       N+ ++ ++I GL       EA ALF ++   G +    T+  ++     
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236

Query: 129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL 188
            G         +++     + GVV   +T     +ID   K G ++ A+ +F  M     
Sbjct: 237 LGSARAG----QQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMP---- 286

Query: 189 NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR 248
               V + S++ G+       EA  L  EM D GV  +  + ++++    +   +++A +
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC 308
               +++     +      L+D +   G++   + +F  M     + +  S+N LI GY 
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402

Query: 309 KNKEVEEALSLYNELPFKGIKPTVVTY 335
            +    +A+ ++  +  +G+ P  VT+
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTF 429

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.1 bits (116), Expect = 6e-08
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNE 322
            G K D  +YN LI+G C+   V+EA+ L +E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.8 bits (115), Expect = 6e-08
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 298 FSYNILINGYCKNKEVEEALSLYNELPFKGIKPTV 332
            +YN LI+G CK   VEEAL L+ E+  +GI+P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 47.7 bits (115), Expect = 8e-08
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 187 NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV 219
            L P+VVTY +LI G C A   +EA  LL EM 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 8   PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFV 67
                S++ L+G  +  K++   L L++ + SI L P + T + LI   C+  Q+     
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

Query: 68  IFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC 127
           +   + R    PN +T++ L+     +        L ++ K  G +PN++    +  GLC
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 66/300 (22%), Positives = 115/300 (38%), Gaps = 51/300 (17%)

Query: 82  VTFTSLIKGLCAESRIVEAAALFTKLKA-FGCEPNVITYNTLINGLCRTGHTIVALNLFK 140
           V+  S I+ L A  R  EA  LF  L+A         TY+ L+              ++ 
Sbjct: 88  VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147

Query: 141 EMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIH 200
            + + +G     F+P+    + ++    K G +  A+ LF +M   NL     ++ ++I 
Sbjct: 148 HVES-SG-----FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIG 197

Query: 201 GFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP 260
           G   A ++ EA  L  EM + G                     D   R   +M++     
Sbjct: 198 GLVDAGNYREAFALFREMWEDG--------------------SDAEPRTFVVMLRASAG- 236

Query: 261 NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLY 320
                          G     ++L   +   G   D F    LI+ Y K  ++E+A  ++
Sbjct: 237 --------------LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282

Query: 321 NELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVR 380
           + +P K    T V +N++  G      +E AL L+ EM+ + V+ D  T+   I  +  R
Sbjct: 283 DGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI-RIFSR 337

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 45.1 bits (108), Expect = 7e-07
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV 227
           VTY +LI G C A    EA  L  EM ++G++P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 298 FSYNILINGYCKNKEVEEALSLYNELPFKGI 328
            +YN LI+GYCK  ++EEAL L+ E+  KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 45/237 (18%), Positives = 97/237 (40%), Gaps = 24/237 (10%)

Query: 57  CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEA-----AALFTKLKAFG 111
           C  GQ+     +   +       +   + +L + LC   R VE      +   +   + G
Sbjct: 62  CSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLG 120

Query: 112 CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG 171
                   N +++   R G  + A  +F +M   +     +F     ++++++ G  K G
Sbjct: 121 VRLG----NAMLSMFVRFGELVHAWYVFGKMPERD-----LF-----SWNVLVGGYAKAG 166

Query: 172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN 231
           + D+A  L+ +M +  + P+V T+  ++       D    + +   +V  G + +V   N
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226

Query: 232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM 288
            ++    K G + +A  + D M + D      ++N ++ G+   G+     ELF +M
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTM 279

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.5 bits (104), Expect = 2e-06
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 221 QGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV 254
           +G++P+VV+ N +++ LC+ G++D A  LLD M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 3e-06
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSME 289
            ++P+  TYNTL+DG C  G+++   EL   ME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENL 188
           VTY+ +I G CK G +++A ELF +MK + +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGV 223
           VTY SLI G+C A    EA  L  EM ++GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF 285
           ++ S NV++    K G  D A  L   M+   VRP+ +T+  ++        + R +E+ 
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210

Query: 286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEI 345
             +   G + D    N LI  Y K  +V  A  +++ +P +      +++N +  G FE 
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFEN 266

Query: 346 RQAERALKLFVEMQGNDVAADTCTYRTFI 374
            +    L+LF  M+   V  D  T  + I
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVI 295

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query: 158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV 192
           VTY+ +IDGLCK G V++A ELF +MK   + P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDD 297
            TYNTL+DG C  G++    ELF  M+  G + D 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 39/141 (27%)

Query: 230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTY------------------------ 265
           SN  +  LC +G+++ A +LL+ M +  V  +   Y                        
Sbjct: 54  SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113

Query: 266 -----------NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVE 314
                      N ++  F   G++     +F  M     + D FS+N+L+ GY K    +
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFD 169

Query: 315 EALSLYNELPFKGIKPTVVTY 335
           EAL LY+ + + G++P V T+
Sbjct: 170 EALCLYHRMLWAGVRPDVYTF 190

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.6 bits (94), Expect = 5e-05
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 326 KGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ 359
           KG+KP VVTYNTL  GL    + + A++L  EM+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.7 bits (94), Expect = 5e-05
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 117 ITYNTLINGLCRTGHTIVALNLFKEM 142
           +TYN+LI+G C+ G    AL LFKEM
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 263 FTYNTLMDGFCLTGKINRVKELFVSMESMGC 293
            TYN+L+ G+C  GK+    ELF  M+  G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP 225
           + TY +L+     A D + A  +L EM   G++P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 79  PNVVTFTSLIKGLCAESRIVEAAALF 104
           P+VVT+ +LI GLC   R+ EA  L 
Sbjct: 5   PDVVTYNTLIDGLCRAGRVDEAVELL 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 41 GLFPDLYTYSILINCFCKMGQV 62
          GL PD+ TY+ LI+  C+ G+V
Sbjct: 2  GLKPDVVTYNTLIDGLCRAGRV 23

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 82  VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV 116
           VT+ +LI GLC   R+ EA  LF ++K  G EP+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV 81
           TY+ LI+  CK G+V     +F  +      P+V
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 117 ITYNTLINGLCRTGHTIVALNLFKEM 142
           +TYNTLI+GLC+ G    AL LFKEM
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEM 26

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 298 FSYNILINGYCKNKEVEEALSLYNELPFKGIKP 330
            +YN L+    K  + + AL++  E+   G+KP
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP 190
             TY+ ++  L K G  D A  +  +MK   L P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 333 VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT 367
           VTYNTL  GL +  + E AL+LF EM+   +  D 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 333 VTYNTLFHGLFEIRQAERALKLFVEMQGNDV 363
           VTYN+L  G  +  + E AL+LF EM+   V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.88
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.85
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
KOG2076	895	consensus RNA polymerase III transcription factor	99.8
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.78
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.76
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.72
KOG2003	840	consensus TPR repeat-containing protein [General f	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.7
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.69
KOG1126	638	consensus DNA-binding cell division cycle control	99.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.69
KOG1126	638	consensus DNA-binding cell division cycle control	99.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.67
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.63
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.62
PRK12370	553	invasion protein regulator; Provisional	99.61
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.57
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.57
PRK12370	553	invasion protein regulator; Provisional	99.56
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.53
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.5
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.5
KOG1129	478	consensus TPR repeat-containing protein [General f	99.49
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.48
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.47
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.46
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.43
PF13041	50	PPR_2: PPR repeat family	99.41
PF13041	50	PPR_2: PPR repeat family	99.4
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.36
PRK11189	296	lipoprotein NlpI; Provisional	99.36
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
PRK11189	296	lipoprotein NlpI; Provisional	99.34
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.33
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.29
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.24
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.23
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.22
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.2
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.2
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.17
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.14
PRK04841	903	transcriptional regulator MalT; Provisional	99.11
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.1
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.08
PRK04841	903	transcriptional regulator MalT; Provisional	99.07
KOG1125	579	consensus TPR repeat-containing protein [General f	99.05
PLN02789	320	farnesyltranstransferase	99.03
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.02
PLN02789	320	farnesyltranstransferase	99.02
KOG1125	579	consensus TPR repeat-containing protein [General f	99.0
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.95
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.94
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.91
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.88
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.84
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.84
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.81
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.8
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.79
PF12854	34	PPR_1: PPR repeat	98.78
PF12854	34	PPR_1: PPR repeat	98.78
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.71
PRK15359	144	type III secretion system chaperone protein SscB;	98.71
PRK15359	144	type III secretion system chaperone protein SscB;	98.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.69
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.64
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.62
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.55
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.52
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.52
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.44
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.4
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.36
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.35
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.3
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.28
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.27
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.27
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.21
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.21
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.16
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.13
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.13
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.1
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.09
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.07
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.06
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.04
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.03
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.87
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.86
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.86
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.86
KOG0553	304	consensus TPR repeat-containing protein [General f	97.86
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.85
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.8
KOG0553	304	consensus TPR repeat-containing protein [General f	97.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.77
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.76
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.76
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.72
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.72
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.7
PF12688	120	TPR_5: Tetratrico peptide repeat	97.69
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.62
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.53
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.53
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.51
PRK10803	263	tol-pal system protein YbgF; Provisional	97.49
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.43
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.42
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.38
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.36
PF13371	73	TPR_9: Tetratricopeptide repeat	97.33
PRK10803	263	tol-pal system protein YbgF; Provisional	97.33
PF13371	73	TPR_9: Tetratricopeptide repeat	97.31
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.25
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.24
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.23
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.22
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.2
PRK15331	165	chaperone protein SicA; Provisional	97.12
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.11
PRK15331	165	chaperone protein SicA; Provisional	97.09
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.98
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.96
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.94
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.94
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.72
KOG1585	308	consensus Protein required for fusion of vesicles	96.65
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.61
PF13512	142	TPR_18: Tetratricopeptide repeat	96.59
PRK11906	458	transcriptional regulator; Provisional	96.59
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.52
PRK11906	458	transcriptional regulator; Provisional	96.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.51
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.5
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.49
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.47
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.27
PF13428	44	TPR_14: Tetratricopeptide repeat	96.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.14
KOG3941	406	consensus Intermediate in Toll signal transduction	96.05
KOG4555	175	consensus TPR repeat-containing protein [Function	96.04
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.03
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.01
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.97
KOG1585	308	consensus Protein required for fusion of vesicles	95.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.95
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.91
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.84
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.82
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.79
PF13428	44	TPR_14: Tetratricopeptide repeat	95.68
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.55
KOG3941	406	consensus Intermediate in Toll signal transduction	95.46
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.45
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.33
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.25
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.18
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.09
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.02
KOG4555	175	consensus TPR repeat-containing protein [Function	94.97
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.97
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.9
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.8
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.8
KOG1258	577	consensus mRNA processing protein [RNA processing	94.75
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.72
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.69
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.62
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.55
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.48
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.36
PF13512	142	TPR_18: Tetratricopeptide repeat	94.19
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.08
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.04
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.95
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.84
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.81
PF13431	34	TPR_17: Tetratricopeptide repeat	93.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.45
PF13431	34	TPR_17: Tetratricopeptide repeat	93.35
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.16
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.13
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.1
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	93.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.97
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.43
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.25
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.13
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	91.86
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.86
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.67
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.42
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.09
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.05
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.02
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.99
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.95
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.75
PRK11619	644	lytic murein transglycosylase; Provisional	90.3
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.29
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.14
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.6
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	89.4
COG3947	361	Response regulator containing CheY-like receiver a	89.36
KOG4234	271	consensus TPR repeat-containing protein [General f	89.34
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.27
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.24
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.05
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.04
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.7
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.65
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.46
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.94
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.59
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.55
KOG1550	552	consensus Extracellular protein SEL-1 and related	87.52
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.32
KOG2471	696	consensus TPR repeat-containing protein [General f	87.31
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.15
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.12
COG3947	361	Response regulator containing CheY-like receiver a	86.92
KOG4234	271	consensus TPR repeat-containing protein [General f	86.85
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.64
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.53
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.34
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.11
KOG4648	536	consensus Uncharacterized conserved protein, conta	86.07
COG1747	711	Uncharacterized N-terminal domain of the transcrip	86.06
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.0
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	85.85
PRK09687	280	putative lyase; Provisional	85.58
PF13929	292	mRNA_stabil: mRNA stabilisation	84.84
PRK09687	280	putative lyase; Provisional	84.81
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	84.73
KOG1258	577	consensus mRNA processing protein [RNA processing	84.36
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.46
COG5159	421	RPN6 26S proteasome regulatory complex component [	82.83
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.36
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.58
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.85
PRK11619	644	lytic murein transglycosylase; Provisional	80.75

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-62  Score=455.59  Aligned_cols=363  Identities=22%  Similarity=0.396  Sum_probs=263.3

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      ||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI  514 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI  514 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            56677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHc--CCCcccccccCChhhHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTN--GNGEIGVVFKPNTVTYSIIIDG  166 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~  166 (400)
                      .+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|..  .+      +.||..+|+.++.+
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------i~PD~vTynaLI~a  588 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHITVGALMKA  588 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777754  22      56777777777777


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811          167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA  246 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  246 (400)
                      |++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus       589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA  668 (1060)
T PLN03218        589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA  668 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      .++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...
T Consensus       669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            77777777777777777777777777777777777777777777677777777777777777777777777777777777


Q ss_pred             CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 015811          327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL  377 (400)
Q Consensus       327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  377 (400)
                      |+.||..+|+.++.+|.+.|+.++|.+++++|.+.|+.||..+|++++..|
T Consensus       749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc  799 (1060)
T PLN03218        749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC  799 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777776543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.7e-62  Score=451.73  Aligned_cols=383  Identities=20%  Similarity=0.317  Sum_probs=370.8

Q ss_pred             CCCCCCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH
Q 015811            2 RHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV   81 (400)
Q Consensus         2 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   81 (400)
                      ...+..+++...++.++..|.+.|.+++|..+|+.|..    |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||.
T Consensus       397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~  472 (1060)
T PLN03218        397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC  472 (1060)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence            34455678888899999999999999999999999974    89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      .+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+      +.||..+|+
T Consensus       473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD~vTYn  546 (1060)
T PLN03218        473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPDRVVFN  546 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988      899999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH--cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKY--ENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK  239 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (400)
                      .++.+|++.|++++|.++|++|..  .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++
T Consensus       547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k  626 (1060)
T PLN03218        547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ  626 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            999999999999999999999986  578999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811          240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSL  319 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  319 (400)
                      .|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++
T Consensus       627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l  706 (1060)
T PLN03218        627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL  706 (1060)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811          320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNS  394 (400)
Q Consensus       320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  394 (400)
                      |++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|..+...+.
T Consensus       707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~  781 (1060)
T PLN03218        707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK  781 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998777664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-57  Score=420.99  Aligned_cols=370  Identities=19%  Similarity=0.290  Sum_probs=248.6

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      ||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+    ||..+|+.++
T Consensus       121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li  196 (697)
T PLN03081        121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTII  196 (697)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHH
Confidence            444444444444444444444444444444444444444444444444444444444444444431    3444444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      .+|++.|++++|.++|++|.+.|+.|+..+|+.++.++...|..+.+.+++..+.+.+      +.+|..+|+.++.+|+
T Consensus       197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g------~~~d~~~~n~Li~~y~  270 (697)
T PLN03081        197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG------VVGDTFVSCALIDMYS  270 (697)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC------CCccceeHHHHHHHHH
Confidence            4444444444444444444444444444444444333333333333333333333333      4566677777778888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      +.|++++|.++|+.|.    .+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus       271 k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~  346 (697)
T PLN03081        271 KCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ  346 (697)
T ss_pred             HCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence            8888888888887775    357778888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811          249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI  328 (400)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  328 (400)
                      ++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus       347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~  422 (697)
T PLN03081        347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV  422 (697)
T ss_pred             HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888888888888888888888888888888888888775    36777888888888888888888888888888888


Q ss_pred             CcCHHHHHHHHHHHhccchHHHHHHHHHHHhh-CCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCC
Q 015811          329 KPTVVTYNTLFHGLFEIRQAERALKLFVEMQG-NDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN  396 (400)
Q Consensus       329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  396 (400)
                      .||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|..+.+.+...
T Consensus       423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~  491 (697)
T PLN03081        423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK  491 (697)
T ss_pred             CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence            88888888888888888888888888888864 578888888888888888888888888777766443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.4e-56  Score=422.95  Aligned_cols=374  Identities=21%  Similarity=0.296  Sum_probs=318.8

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      ||+.+||.+|.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+
T Consensus       251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li  330 (857)
T PLN03077        251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI  330 (857)
T ss_pred             CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      .+|++.|++++|.++|++|.    .||..+|+.++.+|.+.|++++|+++|++|...+      +.||..+|+.++.+|+
T Consensus       331 ~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~~t~~~ll~a~~  400 (857)
T PLN03077        331 QMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDEITIASVLSACA  400 (857)
T ss_pred             HHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCceeHHHHHHHHh
Confidence            99999999999999999886    5788889999999999999999999999998877      7888888888888888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      +.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.|+.++|..
T Consensus       401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~  476 (857)
T PLN03077        401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALI  476 (857)
T ss_pred             ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHH
Confidence            8888888888888888888888888888888888888888888888887753    466677777777777777777777


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC------------------------------CCCHH
Q 015811          249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC------------------------------KHDDF  298 (400)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~~~~~  298 (400)
                      +|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|+                              .||..
T Consensus       477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~  555 (857)
T PLN03077        477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV  555 (857)
T ss_pred             HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence            7777764 3667777666666555555444444444444433332                              56888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh-hCCCCCChhhHHHHHHHh
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ-GNDVAADTCTYRTFIDGL  377 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~  377 (400)
                      +|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 789999999999999999


Q ss_pred             hcCCcchhhHhhhhCCCCCC
Q 015811          378 CVRPQVRFTYARRKGNSGNT  397 (400)
Q Consensus       378 ~~~g~~~~a~~~~~~~~~~~  397 (400)
                      ++.|++++|..+.+.+...+
T Consensus       636 ~r~G~~~eA~~~~~~m~~~p  655 (857)
T PLN03077        636 GRAGKLTEAYNFINKMPITP  655 (857)
T ss_pred             HhCCCHHHHHHHHHHCCCCC
Confidence            99999999999999986544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.3e-56  Score=410.16  Aligned_cols=363  Identities=16%  Similarity=0.263  Sum_probs=234.8

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      .||+.+|+.++..|.+.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus       155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l  230 (697)
T PLN03081        155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM  230 (697)
T ss_pred             CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence            3566667777777777777777777776665    356666777777777777777777777777666666666666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL  167 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (400)
                      +.+|+..|....+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.          ++|..+|+.++.+|
T Consensus       231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------~~~~vt~n~li~~y  300 (697)
T PLN03081        231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----------EKTTVAWNSMLAGY  300 (697)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----------CCChhHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666653          34556666666666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      ++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.
T Consensus       301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~  380 (697)
T PLN03081        301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR  380 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-C
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-K  326 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~  326 (400)
                      ++|+.|.    .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .
T Consensus       381 ~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~  456 (697)
T PLN03081        381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH  456 (697)
T ss_pred             HHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence            6666653    2455666666666666666666666666666666666666666666666666666666666666654 3


Q ss_pred             CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      |+.|+..+|+.++.+|.+.|+.++|.+++++|   ++.|+..+|++|+.+|+..|+++.|....+
T Consensus       457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~  518 (697)
T PLN03081        457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE  518 (697)
T ss_pred             CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            56666666666666666666666666665544   345566666666666666666655544443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.2e-56  Score=417.67  Aligned_cols=373  Identities=23%  Similarity=0.338  Sum_probs=256.5

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      +||+.+||.+|.+|.+.|++++|+++|++|...|+.||..+|+.++.+|+..+++..+.+++..+.+.|+.||..+++.|
T Consensus       149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L  228 (857)
T PLN03077        149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL  228 (857)
T ss_pred             CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence            47999999999999999999999999999999999999999888888877777777777777777777777777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL  167 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (400)
                      +.+|++.|+++.|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|...+      +.||..+|+.++.+|
T Consensus       229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS------VDPDLMTITSVISAC  298 (857)
T ss_pred             HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHH
Confidence            777777766666666666664    4566666666666666666666666666666655      556666666666666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      ++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~  374 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKAL  374 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHH
Confidence            6666666666666666555555555555555555555555555555555543    234455555555555555555555


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK-  326 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  326 (400)
                      ++|++|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+. 
T Consensus       375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d  454 (857)
T PLN03077        375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD  454 (857)
T ss_pred             HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            5555555555555555555555555555555555555555555555555555555555554444444444444443321 


Q ss_pred             -----------------------------CC-------------------------------------------------
Q 015811          327 -----------------------------GI-------------------------------------------------  328 (400)
Q Consensus       327 -----------------------------~~-------------------------------------------------  328 (400)
                                                   ++                                                 
T Consensus       455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y  534 (857)
T PLN03077        455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY  534 (857)
T ss_pred             eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence                                         12                                                 


Q ss_pred             ----------------CcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811          329 ----------------KPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG  392 (400)
Q Consensus       329 ----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  392 (400)
                                      .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|..+++.
T Consensus       535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~  614 (857)
T PLN03077        535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS  614 (857)
T ss_pred             HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence                            3466678888889999999999999999999999999999999999999999999999988877


Q ss_pred             CC
Q 015811          393 NS  394 (400)
Q Consensus       393 ~~  394 (400)
                      +.
T Consensus       615 M~  616 (857)
T PLN03077        615 ME  616 (857)
T ss_pred             HH
Confidence            65

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=2.2e-27  Score=229.44  Aligned_cols=368  Identities=13%  Similarity=0.095  Sum_probs=255.4

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      .+..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..+...|++++|.++++.+.+.. +.+...|..+.
T Consensus       531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  608 (899)
T TIGR02917       531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG  608 (899)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            344455555555555555555555555554443 3344455555555666666666666666655542 33555666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      .++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++....       +.+..++..++..+.
T Consensus       609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~  680 (899)
T TIGR02917       609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-------PDNTEAQIGLAQLLL  680 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH
Confidence            66666666666666666666543 3345556666666666666666666666666543       445566666677777


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      ..|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+...+  |+..++..+..++.+.|++++|.+
T Consensus       681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~  757 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK  757 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777777766553 3355666667777777778888888777777653  444666677777888888888888


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811          249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI  328 (400)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  328 (400)
                      .++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|+..++++.... 
T Consensus       758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-  833 (899)
T TIGR02917       758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-  833 (899)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-
Confidence            888777764 5567777888888888888888888888888765 5677788888888888888 77888888877653 


Q ss_pred             CcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811          329 KPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNS  394 (400)
Q Consensus       329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  394 (400)
                      +-+...+..+...+...|++++|.+.++++.+.+.. +..++..+..+++..|++++|...++.+.
T Consensus       834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            225556777788888999999999999999987643 78889999999999999999998887653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=4.6e-26  Score=220.26  Aligned_cols=366  Identities=11%  Similarity=0.044  Sum_probs=189.0

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      +++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+.
T Consensus       463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  540 (899)
T TIGR02917       463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA  540 (899)
T ss_pred             CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            334444445555555555555555555544432 2233444444444555555555555555554432 22344444455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      ..+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|..+++.+....       +.+...|..+..++.
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~  612 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PDSPEAWLMLGRAQL  612 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence            55555555555555555554433 2334444445555555555555555555554432       334455555555555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      ..|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|..
T Consensus       613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  690 (899)
T TIGR02917       613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK  690 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555555432 2234445555555555555555555555555442 2234455555555555555555555


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811          249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI  328 (400)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  328 (400)
                      +++.+.+.. +.+...+..+...+...|++++|...++.+...+  |+..++..++.++...|++++|...++++.+.. 
T Consensus       691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-  766 (899)
T TIGR02917       691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-  766 (899)
T ss_pred             HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            555555543 3344555555555556666666666666655543  333445555555666666666666666555442 


Q ss_pred             CcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811          329 KPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG  392 (400)
Q Consensus       329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  392 (400)
                      +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .+|...++.
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~  828 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK  828 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence            2244555555556666666666666666665543 2344555566666666666 555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=2.8e-24  Score=187.08  Aligned_cols=313  Identities=14%  Similarity=0.050  Sum_probs=249.6

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc
Q 015811           53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN---VITYNTLINGLCRT  129 (400)
Q Consensus        53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  129 (400)
                      ...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ..++..+...|...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            445567889999999999999875 33667888888999999999999999998887532111   24577788889999


Q ss_pred             CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhc
Q 015811          130 GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHA  205 (400)
Q Consensus       130 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~  205 (400)
                      |++++|+.+|+++.+..       +.+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..+...+.+.
T Consensus       121 g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            99999999999998754       456788889999999999999999999998876433221    2345677778889


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHH
Q 015811          206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF  285 (400)
Q Consensus       206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  285 (400)
                      |++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...+
T Consensus       194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999998764 33456777788899999999999999999987643333466788899999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc---cchHHHHHHHHHHHhhCC
Q 015811          286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE---IRQAERALKLFVEMQGND  362 (400)
Q Consensus       286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~  362 (400)
                      +++.+..  |+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.++++.++++|.+.+
T Consensus       273 ~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        273 RRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             HHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            9998864  56666788999999999999999999998876  6888889888877664   568999999999999888


Q ss_pred             CCCChhhHHHHHHHhhcCCcch
Q 015811          363 VAADTCTYRTFIDGLCVRPQVR  384 (400)
Q Consensus       363 ~~~~~~~~~~l~~~~~~~g~~~  384 (400)
                      +.|++.      .+|.++|-..
T Consensus       349 ~~~~p~------~~c~~cg~~~  364 (389)
T PRK11788        349 LKRKPR------YRCRNCGFTA  364 (389)
T ss_pred             HhCCCC------EECCCCCCCC
Confidence            777776      2355555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1.6e-23  Score=182.33  Aligned_cols=308  Identities=14%  Similarity=0.056  Sum_probs=254.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTSLIKG   90 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~   90 (400)
                      .......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...
T Consensus        38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~  116 (389)
T PRK11788         38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD  116 (389)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            3344556678899999999999999875 45677899999999999999999999999988642222   3567888999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC---hhhHHHHHHHH
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN---TVTYSIIIDGL  167 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~  167 (400)
                      |...|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+....+.     ++.   ...+..+...+
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~  190 (389)
T PRK11788        117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-----SLRVEIAHFYCELAQQA  190 (389)
T ss_pred             HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHH
Confidence            999999999999999998763 556788999999999999999999999999876521     111   22456677788


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      ...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|.
T Consensus       191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence            89999999999999998764 33466788888999999999999999999997643323456788899999999999999


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHhhhh
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCK---NKEVEEALSLYNELP  324 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~  324 (400)
                      ..++.+.+.  .|+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..+++++.
T Consensus       270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~  345 (389)
T PRK11788        270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV  345 (389)
T ss_pred             HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence            999999886  456666788999999999999999999999886  5888888888877764   568999999999999


Q ss_pred             hCCCCcCHH
Q 015811          325 FKGIKPTVV  333 (400)
Q Consensus       325 ~~~~~p~~~  333 (400)
                      +.++.|++.
T Consensus       346 ~~~~~~~p~  354 (389)
T PRK11788        346 GEQLKRKPR  354 (389)
T ss_pred             HHHHhCCCC
Confidence            877776665

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.94  E-value=8.9e-22  Score=179.54  Aligned_cols=335  Identities=10%  Similarity=0.016  Sum_probs=274.8

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++++.+.. +.+...+..+...
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~  119 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV  119 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            3445567788889999999999999998765 4456677777788888999999999999999875 3367788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                      +...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....       +.+...+..+ ..+...
T Consensus       120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~  190 (656)
T PRK15174        120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNK  190 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHc
Confidence            999999999999999999874 4567788889999999999999999999887654       2333444333 347889


Q ss_pred             CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh----H
Q 015811          171 GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN----A  246 (400)
Q Consensus       171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a  246 (400)
                      |++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++    |
T Consensus       191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A  269 (656)
T PRK15174        191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA  269 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence            9999999999998776433444555566778889999999999999999875 4466778888999999999986    8


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...++++...
T Consensus       270 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        270 AEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999998875 4567888999999999999999999999999875 456777888999999999999999999999876


Q ss_pred             CCCcCHHH-HHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          327 GIKPTVVT-YNTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       327 ~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                        .|+... +..+..++...|+.++|...|++..+.
T Consensus       348 --~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        348 --KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             --CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence              455433 334566788999999999999998864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=9e-21  Score=173.53  Aligned_cols=369  Identities=11%  Similarity=-0.044  Sum_probs=285.1

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      .+......+.+.|++++|+..|++..+.  .|+...|..+..+|.+.|++++|++.++..++.. +.+...+..+..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3556778889999999999999998875  5788889999999999999999999999999875 336778888999999


Q ss_pred             hcCCHHHHHHHHHHHHHcC-----------------------------CCCChhhHHHHHH-------------------
Q 015811           93 AESRIVEAAALFTKLKAFG-----------------------------CEPNVITYNTLIN-------------------  124 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~-------------------  124 (400)
                      ..|++++|...|......+                             .+++...+..+..                   
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            9999999987654433211                             0111111111100                   


Q ss_pred             -----------HH------HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 015811          125 -----------GL------CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN  187 (400)
Q Consensus       125 -----------~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  187 (400)
                                 ..      ...+++++|++.|+.....+..    .+.....+..+..++...|++++|+..+++..+..
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~  361 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD  361 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                       00      1125788899999988865410    13345678888889999999999999999998763


Q ss_pred             CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH
Q 015811          188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT  267 (400)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  267 (400)
                       +.....|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..
T Consensus       362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~  438 (615)
T TIGR00990       362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ  438 (615)
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence             2235678888899999999999999999998874 4467788889999999999999999999999875 456777888


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCH-----H-HHHHHHHH
Q 015811          268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTV-----V-TYNTLFHG  341 (400)
Q Consensus       268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~-~~~~l~~~  341 (400)
                      +...+.+.|++++|...+++..+.. +.+...++.+..++...|++++|...|++........+.     . .++.....
T Consensus       439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~  517 (615)
T TIGR00990       439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL  517 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence            8999999999999999999998764 556888999999999999999999999998875221111     1 11222223


Q ss_pred             HhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          342 LFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      +...|++++|.+++++...... .+...+..+...+...|++++|...++..
T Consensus       518 ~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A  568 (615)
T TIGR00990       518 FQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERA  568 (615)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3446999999999999887542 23446888999999999999998876653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=6.5e-22  Score=166.30  Aligned_cols=367  Identities=16%  Similarity=0.124  Sum_probs=267.9

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH-HHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV-TFT   85 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~   85 (400)
                      .|.-..+|+.+...+-..|+++.|+.+|+.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.+  |+.. ...
T Consensus       112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s  188 (966)
T KOG4626|consen  112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS  188 (966)
T ss_pred             cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence            44556899999999999999999999999999875 4468899999999999999999999999998864  4433 333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID  165 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (400)
                      .+...+...|+..+|...|.+.++.. +--..+|..|...+-.+|+...|+..|++.....       +--...|..+..
T Consensus       189 ~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGn  260 (966)
T KOG4626|consen  189 DLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGN  260 (966)
T ss_pred             chhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHH
Confidence            45555566788888888888877663 2335678888888888888888888888887754       334567778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          166 GLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       166 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      .|...+.++.|...|.+....  .| ....+..+...|...|..+-|+..+++.++.. +--...|+.+..++-..|++.
T Consensus       261 V~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~  337 (966)
T KOG4626|consen  261 VYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVT  337 (966)
T ss_pred             HHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchH
Confidence            888888888888888777654  33 34566667777777788888888887777653 223456777777777778888


Q ss_pred             hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      +|.+.+....... +-.....+.|...|...|.++.|..+|....+.. +.-....+.|...|-++|++++|+..+++.+
T Consensus       338 ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal  415 (966)
T KOG4626|consen  338 EAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL  415 (966)
T ss_pred             HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence            8888877777654 3345567777777777777777777777776653 2234556777777777777777777777776


Q ss_pred             hCCCCcCH-HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          325 FKGIKPTV-VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT-CTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       325 ~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      ..  .|+. ..++.+...|-..|+.+.|++.+.+.+..  .|.. ..++.|...|..+|+..+|+..++..
T Consensus       416 rI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  416 RI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             hc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence            54  5553 35666777777777777777777776653  3432 35667777777777777776666543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=1.1e-20  Score=172.41  Aligned_cols=358  Identities=11%  Similarity=0.033  Sum_probs=284.9

Q ss_pred             HHHccCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSI--GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI   97 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   97 (400)
                      .+.++.+++..--+|+...+.  .-..+..-...++..+.+.|++++|..+++..+...+. +...+..++.+....|++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~   92 (656)
T PRK15174         14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP   92 (656)
T ss_pred             hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence            345667777666666554332  11123445566778889999999999999999987544 555666677888889999


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHH
Q 015811           98 VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAK  177 (400)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  177 (400)
                      ++|...++++.+.. +.+...+..+...+...|++++|+..++++....       +.+...+..+...+...|++++|.
T Consensus        93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~  164 (656)
T PRK15174         93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAI  164 (656)
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHH
Confidence            99999999999875 5567788889999999999999999999998864       556788889999999999999999


Q ss_pred             HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 015811          178 ELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD  257 (400)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  257 (400)
                      ..++.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+..
T Consensus       165 ~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~  242 (656)
T PRK15174        165 SLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG  242 (656)
T ss_pred             HHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999988765422 33333333 3478899999999999998876433444455556778899999999999999999875


Q ss_pred             CCCcHHHHHHHHHHHHcCCChHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811          258 VRPNAFTYNTLMDGFCLTGKINR----VKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV  333 (400)
Q Consensus       258 ~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  333 (400)
                       +.+...+..+...+...|++++    |...++++.+.. +.+...+..+...+...|++++|...+++..+... .+..
T Consensus       243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~  319 (656)
T PRK15174        243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPY  319 (656)
T ss_pred             -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence             5567788889999999999986    899999998875 55788899999999999999999999999988632 2456


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhh-HHHHHHHhhcCCcchhhHhhhhCC
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCT-YRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      .+..+..++...|++++|+..++++.+.  .|+... +..+..++...|++++|...++..
T Consensus       320 a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        320 VRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6777888999999999999999999874  344433 444567889999999998887764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=3e-20  Score=180.95  Aligned_cols=365  Identities=12%  Similarity=0.033  Sum_probs=217.1

Q ss_pred             HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc-HH----------H--H
Q 015811           18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN-VV----------T--F   84 (400)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----------~--~   84 (400)
                      ...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++.++...... ..          .  .
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            334444555555555555555432 22445555555555555555555555555554322110 00          0  0


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccc-----------
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF-----------  153 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------  153 (400)
                      ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+..+......           
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            112334444555555555555555442 22333444444555555555555555555443332110000           


Q ss_pred             ------------------------cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 015811          154 ------------------------KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWN  209 (400)
Q Consensus       154 ------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (400)
                                              ......+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|+++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence                                    0001123344556667777777777777776653 224455666677777777777


Q ss_pred             HHHHHHHHHHHCCCCCCcccHHHH--------------------------------------------HHHHHhcCCchh
Q 015811          210 EAKGLLIEMVDQGVQPNVVSSNVI--------------------------------------------MNELCKNGKMDN  245 (400)
Q Consensus       210 ~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~~~~~~  245 (400)
                      +|...++++.+.. +.+...+..+                                            ...+...|+.++
T Consensus       513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            7777777766542 1122222222                                            233445555555


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          246 ASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      |..+++.     .+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|...++.+.+
T Consensus       592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            5555541     24456667778888999999999999999999875 55788899999999999999999999998876


Q ss_pred             CCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCC--CC---ChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          326 KGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDV--AA---DTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       326 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      .. +.+...+..+..++...|++++|.++++++.....  .|   +...+..+...+...|++++|...++..
T Consensus       666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A  737 (1157)
T PRK11447        666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA  737 (1157)
T ss_pred             cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            52 22455666777888899999999999999886432  12   2235566678889999999998887655

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=2.3e-19  Score=164.36  Aligned_cols=341  Identities=15%  Similarity=0.061  Sum_probs=264.7

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----------
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF-----------   77 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------   77 (400)
                      |+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|+..|..+...+.           
T Consensus       158 p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~  236 (615)
T TIGR00990       158 PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVE  236 (615)
T ss_pred             CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            456789999999999999999999999999875 45678999999999999999999876654432110           


Q ss_pred             ------------------CccHHHHHHH------------------------------HHHH------HhcCCHHHHHHH
Q 015811           78 ------------------APNVVTFTSL------------------------------IKGL------CAESRIVEAAAL  103 (400)
Q Consensus        78 ------------------~~~~~~~~~l------------------------------~~~~------~~~~~~~~a~~~  103 (400)
                                        +++...+..+                              +...      ...+++++|.+.
T Consensus       237 ~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~  316 (615)
T TIGR00990       237 RLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA  316 (615)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence                              0000000000                              0000      112578899999


Q ss_pred             HHHHHHcC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811          104 FTKLKAFG-C-EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFL  181 (400)
Q Consensus       104 ~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  181 (400)
                      |+...+.+ . +.....+..+...+...|++++|+..+++.....       +.....|..+..++...|++++|...|+
T Consensus       317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~  389 (615)
T TIGR00990       317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-------PRVTQSYIKRASMNLELGDPDKAEEDFD  389 (615)
T ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99998764 1 2345667888888999999999999999998864       4456788889999999999999999999


Q ss_pred             HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc
Q 015811          182 QMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN  261 (400)
Q Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  261 (400)
                      ++.+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|...++...+.. +.+
T Consensus       390 ~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~  466 (615)
T TIGR00990       390 KALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEA  466 (615)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence            998764 3457888899999999999999999999999874 3456677788889999999999999999998764 556


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHH
Q 015811          262 AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDF------SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTY  335 (400)
Q Consensus       262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~  335 (400)
                      ...++.+...+...|++++|...|++..+.....+..      .++..+..+...|++++|..++++...... .+...+
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~  545 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAV  545 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHH
Confidence            7889999999999999999999999998764221111      122222334457999999999999887642 244578


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          336 NTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       336 ~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                      ..+...+...|++++|++.|++..+.
T Consensus       546 ~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       546 ATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88999999999999999999998764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=2.1e-19  Score=175.06  Aligned_cols=382  Identities=9%  Similarity=-0.004  Sum_probs=263.9

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.....+...+..+-.......|...+.........|... ......++...|++++|...|++.++.. +.+...+..
T Consensus       231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~  308 (1157)
T PRK11447        231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGA  308 (1157)
T ss_pred             ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            44455666666777766667788888888876543234332 2344667788999999999999999875 337888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hh------------hHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc---
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPN-VI------------TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG---  150 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---  150 (400)
                      +..++.+.|++++|+..|++..+...... ..            ........+.+.|++++|+..|+++....+...   
T Consensus       309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~  388 (1157)
T PRK11447        309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV  388 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999987642111 11            112335678899999999999999988653210   


Q ss_pred             -----------------------ccc-cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CChHhHHHH
Q 015811          151 -----------------------VVF-KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN--------PNVVTYTSL  198 (400)
Q Consensus       151 -----------------------~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l  198 (400)
                                             ... +.+...+..+...+ ..++.++|..+++.+......        .....+..+
T Consensus       389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~  467 (1157)
T PRK11447        389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ  467 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence                                   000 11222333344444 345677777777654322100        012235556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811          199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  278 (400)
                      ...+...|++++|...+++.++.. +.+...+..+...|.+.|++++|...++.+.+.. +.+...+..+...+...++.
T Consensus       468 a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~  545 (1157)
T PRK11447        468 AEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRD  545 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCH
Confidence            777888999999999999999874 3356677888999999999999999999988754 33343333333334444555


Q ss_pred             HHHHHHHHHHHhc---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811          279 NRVKELFVSMESM---------------------------------------GCKHDDFSYNILINGYCKNKEVEEALSL  319 (400)
Q Consensus       279 ~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~  319 (400)
                      ++|...++.+...                                       ..+.+...+..+...+.+.|++++|+..
T Consensus       546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~  625 (1157)
T PRK11447        546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAA  625 (1157)
T ss_pred             HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444332110                                       1244556677788889999999999999


Q ss_pred             HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCC
Q 015811          320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSG  395 (400)
Q Consensus       320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  395 (400)
                      |+++.+.. +.+...+..+...+...|++++|++.++...+.. +.+...+..+..++...|++++|...++.+..
T Consensus       626 y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        626 YQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99988763 2367788888899999999999999999877642 12445566777888899999999888877643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-20  Score=157.88  Aligned_cols=349  Identities=15%  Similarity=0.119  Sum_probs=294.3

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      .|..+.+|..+..++...|+.+.|.+.|.+.++.+  |+.. ....+...+...|++++|...|.+.++... --...|.
T Consensus       146 ~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiaws  222 (966)
T KOG4626|consen  146 KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWS  222 (966)
T ss_pred             CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeeh
Confidence            45678999999999999999999999999998864  5544 344556666779999999999999988642 2456789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID  165 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (400)
                      .|.-.+..+|+...|++.|++..+.. +--...|..|...|...+.++.|+..+.+.....       +.....+..+..
T Consensus       223 nLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-------pn~A~a~gNla~  294 (966)
T KOG4626|consen  223 NLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-------PNHAVAHGNLAC  294 (966)
T ss_pred             hcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-------CcchhhccceEE
Confidence            99999999999999999999999774 3346789999999999999999999999988764       455678888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          166 GLCKEGFVDKAKELFLQMKYENLNPN-VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       166 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      .|...|..+-|+..|++.++.  .|+ ...|+.|..++-..|+..+|...+.+.+... +......+.|..+|...|.++
T Consensus       295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence            999999999999999999876  344 5789999999999999999999999998863 345677889999999999999


Q ss_pred             hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811          245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD-DFSYNILINGYCKNKEVEEALSLYNEL  323 (400)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  323 (400)
                      .|..+|....+.. +--....+.|...|-++|++++|...+++..+.  .|+ ...|+.+...|-..|+.+.|.+.+.+.
T Consensus       372 ~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  372 EATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             HHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence            9999999998853 333567899999999999999999999999986  454 678999999999999999999999999


Q ss_pred             hhCCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh-hHHHHHHH
Q 015811          324 PFKGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC-TYRTFIDG  376 (400)
Q Consensus       324 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~  376 (400)
                      +..  .|. ...++.|...|-..|+..+|+.-++..++  ++||.. .+-.++.+
T Consensus       449 I~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  449 IQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC  499 (966)
T ss_pred             Hhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence            875  454 35788899999999999999999999887  556553 34444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.89  E-value=2.4e-18  Score=160.55  Aligned_cols=365  Identities=10%  Similarity=-0.017  Sum_probs=213.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      .-.+.+....|+.++|++++.+..... +.+...+..+..++...|++++|.++|++.++.. +.+...+..+..++...
T Consensus        19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~   96 (765)
T PRK10049         19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA   96 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence            333444444445555554444444311 2233344444444444555555555555444432 11333344444444444


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh-
Q 015811           95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV-  173 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  173 (400)
                      |++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++....       |.+...+..+..++...+.. 
T Consensus        97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChH
Confidence            55555555554444432 22223 4444444444455555555554444432       22222323333333333332 


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHc-CCCCChH-hHH----HHHHHH
Q 015811          174 ---------------------------------------------DKAKELFLQMKYE-NLNPNVV-TYT----SLIHGF  202 (400)
Q Consensus       174 ---------------------------------------------~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~  202 (400)
                                                                   ++|++.++.+.+. ...|+.. .+.    ..+..+
T Consensus       168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L  247 (765)
T PRK10049        168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL  247 (765)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence                                                         4455555565543 1122221 111    113345


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC---cHHHHHHHHHHHHcCCCh
Q 015811          203 CHANDWNEAKGLLIEMVDQGVQ-PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP---NAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       203 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~  278 (400)
                      ...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+.....   .......+..++...|++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            6778999999999998877522 222 22335678899999999999999887653111   134456667778899999


Q ss_pred             HHHHHHHHHHHhcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc
Q 015811          279 NRVKELFVSMESMGC-----------KHD---DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE  344 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  344 (400)
                      ++|...++.+.+...           .|+   ...+..+...+...|++++|+.+++++.... +.+...+..+...+..
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            999999998876531           122   2345567778889999999999999988763 3356777888888889


Q ss_pred             cchHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811          345 IRQAERALKLFVEMQGNDVAAD-TCTYRTFIDGLCVRPQVRFTYARRKGNS  394 (400)
Q Consensus       345 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  394 (400)
                      .|++++|++.+++..+.  .|+ ...+......+...|++++|...++.+.
T Consensus       406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999998874  354 4556677778889999999988776653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.88  E-value=1.1e-17  Score=156.16  Aligned_cols=356  Identities=9%  Similarity=0.010  Sum_probs=268.5

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+..++..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+.. +..
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~  121 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLA  121 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHH
Confidence            45566679999999999999999999999988764 5567788888899999999999999999999874 33566 888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH-------------------------
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKE-------------------------  141 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------------------  141 (400)
                      +..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..++.                         
T Consensus       122 la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~  200 (765)
T PRK10049        122 LAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM  200 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            8999999999999999999999874 34555566667777666776666655543                         


Q ss_pred             ---------------------HHcCCCcccccccCChh-hHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHh
Q 015811          142 ---------------------MTNGNGEIGVVFKPNTV-TYS----IIIDGLCKEGFVDKAKELFLQMKYENLN-PNVVT  194 (400)
Q Consensus       142 ---------------------~~~~~~~~~~~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~  194 (400)
                                           +.....     ..|+.. .+.    ..+..+...|++++|+..|+.+.+.+.+ |+. .
T Consensus       201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a  274 (765)
T PRK10049        201 PTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-A  274 (765)
T ss_pred             cccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-H
Confidence                                 222100     012111 111    1133456779999999999999887532 322 2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC-----------CC
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQP---NVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV-----------RP  260 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~  260 (400)
                      ...+...+...|++++|+..++.+.+.....   .......+..++...|++++|...++.+.+...           .|
T Consensus       275 ~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p  354 (765)
T PRK10049        275 QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIP  354 (765)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCC
Confidence            2335778999999999999999988653111   123455666788999999999999999987531           12


Q ss_pred             c---HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HHHHH
Q 015811          261 N---AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT-VVTYN  336 (400)
Q Consensus       261 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~  336 (400)
                      +   ...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|+..+++....  .|+ ...+.
T Consensus       355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~  431 (765)
T PRK10049        355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEV  431 (765)
T ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHH
Confidence            2   2345567778889999999999999998875 667889999999999999999999999999886  455 55666


Q ss_pred             HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 015811          337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL  377 (400)
Q Consensus       337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  377 (400)
                      .....+...|++++|..+++++++  ..|+......+-+.+
T Consensus       432 ~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        432 EQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            667788999999999999999997  356666555555544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=1.2e-17  Score=134.86  Aligned_cols=383  Identities=10%  Similarity=0.120  Sum_probs=286.3

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+..+|..+|.++++-...+.|.++|++......+.+..+||.+|.+-+-..+    .+++.+|.+....||..+||+
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence            4677899999999999999999999999999887778899999999987654433    789999999999999999999


Q ss_pred             HHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHcC--CCcccccccCChhh
Q 015811           87 LIKGLCAESRIVE----AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV-ALNLFKEMTNG--NGEIGVVFKPNTVT  159 (400)
Q Consensus        87 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~  159 (400)
                      ++++.++.|+++.    |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++.+.  |.+..+..+.+...
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            9999999998765    46788999999999999999999999999887744 55555555432  22222223445567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYEN----LNPNV---VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV  232 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  232 (400)
                      |...+..|.+..+.+-|.++...+....    +.|+.   .-|..+....++....+.....++.|.-.-.-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            7788899999999999998877665321    22332   2355677778888899999999999998878889999999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC-Ch-------------HHHHHHHH-------HHHhc
Q 015811          233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG-KI-------------NRVKELFV-------SMESM  291 (400)
Q Consensus       233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------------~~a~~~~~-------~~~~~  291 (400)
                      ++++....|.++-.-+++..++..|.........-++..+++.. .+             +-|..+++       ++.+ 
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-  517 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-  517 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence            99999999999999999988887764444444444444444332 11             11112222       2222 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC----CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh
Q 015811          292 GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG----IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT  367 (400)
Q Consensus       292 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  367 (400)
                       ........+.++-.+.+.|..++|.+++.-+.+.+    ..|.......++....+.++...|...++-|...+...-.
T Consensus       518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E  596 (625)
T KOG4422|consen  518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE  596 (625)
T ss_pred             -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence             24556677888888999999999999999886543    2344444556677778889999999999999887755444


Q ss_pred             hhHHHHHHHhhcCCcchhhHhhhhCCCC
Q 015811          368 CTYRTFIDGLCVRPQVRFTYARRKGNSG  395 (400)
Q Consensus       368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  395 (400)
                      ..-+.+...|.-.....+++.-++++.+
T Consensus       597 ~La~RI~e~f~iNqeq~~~ls~l~~L~~  624 (625)
T KOG4422|consen  597 GLAQRIMEDFAINQEQKEALSNLTALTS  624 (625)
T ss_pred             HHHHHHHHhcCcCHHHHHHHhhhhhhcC
Confidence            4556677777766666677776666544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.85  E-value=4.5e-16  Score=143.04  Aligned_cols=370  Identities=11%  Similarity=0.015  Sum_probs=239.1

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL--YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      .+--.-+-...+.|+++.|+..|++..+..  |+.  ..+ .++..+...|+.++|+..+++..... .........+..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~  110 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR  110 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence            333344445678889999999999888764  442  233 77777888899999988888887321 223333444466


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      .+...|++++|.++|+++.+.. +.++..+..++..+...++.++|++.++++....        |+...+..++..+..
T Consensus       111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------p~~~~~l~layL~~~  181 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------PTVQNYMTLSYLNRA  181 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------cchHHHHHHHHHHHh
Confidence            7888899999999999988875 4456667777788888888888988888887753        444555444444444


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH------------------------------------
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG------------------------------------  213 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------  213 (400)
                      .++..+|++.++++.+.. +-+...+..+..++.+.|-...|.+                                    
T Consensus       182 ~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~  260 (822)
T PRK14574        182 TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE  260 (822)
T ss_pred             cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence            566656888888887763 2244444555555444443322222                                    


Q ss_pred             ------------HHHHHHHC-CCCCCc-ccH----HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC
Q 015811          214 ------------LLIEMVDQ-GVQPNV-VSS----NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT  275 (400)
Q Consensus       214 ------------~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  275 (400)
                                  -++.+... +..|.. ..|    .-.+-++...|+..++++.++.+...+.+....+-.++..+|...
T Consensus       261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~  340 (822)
T PRK14574        261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR  340 (822)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence                        22222221 111211 111    123446667778888888888887776555556777788888888


Q ss_pred             CChHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC-------------CCcCHHH-HH
Q 015811          276 GKINRVKELFVSMESMG-----CKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG-------------IKPTVVT-YN  336 (400)
Q Consensus       276 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~p~~~~-~~  336 (400)
                      +++++|..+++.+....     .+++......|.-+|...+++++|..+++.+.+.-             ..||-.. +.
T Consensus       341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~  420 (822)
T PRK14574        341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT  420 (822)
T ss_pred             CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence            88888888888876532     12233334667778888888888888888877631             1122222 23


Q ss_pred             HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCC
Q 015811          337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGN  396 (400)
Q Consensus       337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  396 (400)
                      .++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|...+|.....
T Consensus       421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            34556777888888888888876542 336667777777888888888887777765443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=1.1e-15  Score=140.54  Aligned_cols=364  Identities=11%  Similarity=0.033  Sum_probs=252.7

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES   95 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   95 (400)
                      .++..+...|+.++|+..+++..... ..+......+...+...|++++|.++|+++.+..+. +...+..++..+...+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~  150 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG  150 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence            67777777788888888888877211 122333333355777778888888888888877533 5666667777788888


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH
Q 015811           96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK  175 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  175 (400)
                      +.++|++.++++...  .|+...+..++..+...++..+|++.++++.+..       |.+...+..+..++.+.|-...
T Consensus       151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~  221 (822)
T PRK14574        151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEP  221 (822)
T ss_pred             CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHH
Confidence            888888888887765  4555555444444444555656888888887764       3344454554444444443333


Q ss_pred             HHH------------------------------------------------HHHHHHHc-CCCCCh-HhH----HHHHHH
Q 015811          176 AKE------------------------------------------------LFLQMKYE-NLNPNV-VTY----TSLIHG  201 (400)
Q Consensus       176 a~~------------------------------------------------~~~~~~~~-~~~~~~-~~~----~~l~~~  201 (400)
                      |.+                                                -++.+... +..|.. ..|    .-.+-+
T Consensus       222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a  301 (822)
T PRK14574        222 ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA  301 (822)
T ss_pred             HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence            333                                                23333321 111221 112    233556


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHcCC
Q 015811          202 FCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD-----VRPNAFTYNTLMDGFCLTG  276 (400)
Q Consensus       202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~  276 (400)
                      +...++..++++.++.+...+.+....+-..+..+|...+++++|..++..+....     .+++......|..++...+
T Consensus       302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e  381 (822)
T PRK14574        302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE  381 (822)
T ss_pred             HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence            67889999999999999988866566688889999999999999999999987653     1233444578889999999


Q ss_pred             ChHHHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811          277 KINRVKELFVSMESMGC-----------KHDD---FSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL  342 (400)
Q Consensus       277 ~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  342 (400)
                      ++++|..+++.+.+...           .||+   ..+..++..+...|++.+|++.++++.... +-|......+...+
T Consensus       382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~  460 (822)
T PRK14574        382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIY  460 (822)
T ss_pred             cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            99999999999987321           1221   233456777889999999999999998763 44888888889999


Q ss_pred             hccchHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          343 FEIRQAERALKLFVEMQGNDVAA-DTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      ...|.+.+|.+.++.....  .| +..+......++...|++++|..+...+
T Consensus       461 ~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        461 LARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999999777664  44 4556677888888999999997766443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.80  E-value=4.9e-15  Score=130.58  Aligned_cols=362  Identities=12%  Similarity=0.061  Sum_probs=279.1

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      ...-.....+...|++++|.+++.+..+.. +.+...|..|...|-+.|+.+++...+-.+...+ +-|...|..+....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls  217 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            333344445555699999999999999876 5688999999999999999999998877766654 33779999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChh----hHHHHHHHH
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV----TYSIIIDGL  167 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~  167 (400)
                      ...|.+.+|.-.|.+.++.. +++...+-.-+..|-+.|+...|..-|.++....      .+.+..    ....+++.+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~  290 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYF  290 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHH
Confidence            99999999999999999885 5666666677888999999999999999998865      122222    233456667


Q ss_pred             HhcCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------------
Q 015811          168 CKEGFVDKAKELFLQMKYE-NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG------------------------  222 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------  222 (400)
                      ...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+....                        
T Consensus       291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~  370 (895)
T KOG2076|consen  291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV  370 (895)
T ss_pred             HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence            7778889999988887763 223456778889999999999999998888776611                        


Q ss_pred             ---CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC--CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH
Q 015811          223 ---VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD--VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDD  297 (400)
Q Consensus       223 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  297 (400)
                         ..++..+ -.++-++......+....+.....+..  +.-+...|.-+..++...|++.+|..++..+.....-.+.
T Consensus       371 ~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~  449 (895)
T KOG2076|consen  371 GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA  449 (895)
T ss_pred             CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence               1112222 123334555566666666666666666  3345678889999999999999999999999887656678


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-CHHHHHHHHHHHhccchHHHHHHHHHHHh--------hCCCCCChh
Q 015811          298 FSYNILINGYCKNKEVEEALSLYNELPFKGIKP-TVVTYNTLFHGLFEIRQAERALKLFVEMQ--------GNDVAADTC  368 (400)
Q Consensus       298 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~  368 (400)
                      ..|-.+..+|...|.+++|...|+..+..  .| +...--.|...+.+.|+.++|.+.++.+.        ..+..|+..
T Consensus       450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r  527 (895)
T KOG2076|consen  450 FVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR  527 (895)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence            89999999999999999999999999876  33 34455566677889999999999999854        334666677


Q ss_pred             hHHHHHHHhhcCCcchh
Q 015811          369 TYRTFIDGLCVRPQVRF  385 (400)
Q Consensus       369 ~~~~l~~~~~~~g~~~~  385 (400)
                      ........+...|+.++
T Consensus       528 i~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  528 ILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHhhhHHH
Confidence            77777778888888775

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.2e-15  Score=135.30  Aligned_cols=374  Identities=10%  Similarity=0.018  Sum_probs=247.8

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTF   84 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   84 (400)
                      .|.|+.+.+.|...|.-.|++..++.+.+.+......  .-...|..+.+++-..|++++|...|.+..+....-....+
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            3467788888999999999999999988888764311  12456888888889999999999999888776322113344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG----HTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      .-+.+.+.+.|+.+.+...|+...+.. +-+..+...|...|+..+    ..+.|..++.+.....       +.|...|
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------~~d~~a~  417 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------PVDSEAW  417 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------cccHHHH
Confidence            557788888999999988888888763 444556666666666554    4466666666666553       5566666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcc-----
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMK----YENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ---GVQPNVV-----  228 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-----  228 (400)
                      -.+...+....-+.. +.+|..+.    ..+..+.....|.+...+...|++..|...|......   ...++..     
T Consensus       418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l  496 (1018)
T KOG2002|consen  418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL  496 (1018)
T ss_pred             HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence            666666554433333 55555443    2344455666777777777777777777777666543   1112221     


Q ss_pred             -cHHHHHHH---------------------------HHhc-------CCchhHHHHHHHHHhCC----------------
Q 015811          229 -SSNVIMNE---------------------------LCKN-------GKMDNASRLLDLMVQCD----------------  257 (400)
Q Consensus       229 -~~~~l~~~---------------------------~~~~-------~~~~~a~~~~~~~~~~~----------------  257 (400)
                       +-..+...                           |.+.       +...+|...+....+.+                
T Consensus       497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~  576 (1018)
T KOG2002|consen  497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK  576 (1018)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence             11111111                           2221       33344444444333211                


Q ss_pred             -------------------CCCcHHHHHHHHHHHHc------------CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015811          258 -------------------VRPNAFTYNTLMDGFCL------------TGKINRVKELFVSMESMGCKHDDFSYNILING  306 (400)
Q Consensus       258 -------------------~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  306 (400)
                                         ..+|+.+.-+|...|..            .+..++|+++|.++.+.. +.|...-|-+.-+
T Consensus       577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiV  655 (1018)
T KOG2002|consen  577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIV  655 (1018)
T ss_pred             hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhh
Confidence                               11233333444443321            134678888888888876 6678888889999


Q ss_pred             HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh-hCCCCCChhhHHHHHHHhhcCCcchh
Q 015811          307 YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ-GNDVAADTCTYRTFIDGLCVRPQVRF  385 (400)
Q Consensus       307 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~  385 (400)
                      ++..|++.+|..+|.+.++.... ...+|-.+.++|..+|++..|+++|+... +..-.-+..+...|.+++...|.+.+
T Consensus       656 LA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e  734 (1018)
T KOG2002|consen  656 LAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE  734 (1018)
T ss_pred             hhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999886432 45678889999999999999999999865 44445577788999999999999999


Q ss_pred             hHhhhh
Q 015811          386 TYARRK  391 (400)
Q Consensus       386 a~~~~~  391 (400)
                      |.+...
T Consensus       735 ak~~ll  740 (1018)
T KOG2002|consen  735 AKEALL  740 (1018)
T ss_pred             HHHHHH
Confidence            866543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=2.2e-15  Score=122.03  Aligned_cols=347  Identities=16%  Similarity=0.190  Sum_probs=255.0

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CChhh-HHHHHHHHHhccCCccHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKM--GQVSL-GFVIFGRILRSCFAPNVVTF   84 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~~~-a~~~~~~~~~~~~~~~~~~~   84 (400)
                      |..+.+=|.|+.. ..+|.+..+.-+|+.|.+.|++.+...-..+++.-+-.  .++-- -++.|-.|.+.| ..+..+|
T Consensus       113 ~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW  190 (625)
T KOG4422|consen  113 PLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW  190 (625)
T ss_pred             chhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc
Confidence            3455566666654 45788899999999999998887777666665543332  23222 233444444444 2244444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII  164 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (400)
                              +.|+..+   ++.+..    +.+..++..+|.++++-...+.|.+++++.....      .+.+..+||.+|
T Consensus       191 --------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI  249 (625)
T KOG4422|consen  191 --------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLI  249 (625)
T ss_pred             --------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhh
Confidence                    2354433   444433    6688899999999999999999999999988777      588999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811          165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNE----AKGLLIEMVDQGVQPNVVSSNVIMNELCKN  240 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (400)
                      .+-.-..+    .+++.+|......||..|+|+++.+..+.|+++.    |.+++.+|.+.|+.|+..+|..++..+++.
T Consensus       250 ~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re  325 (625)
T KOG4422|consen  250 GASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE  325 (625)
T ss_pred             hHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence            87644333    7889999999999999999999999999998765    567788899999999999999999999998


Q ss_pred             CCchh-HHHHHHHHHhC----CC----CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC----CCCC---HHHHHHHH
Q 015811          241 GKMDN-ASRLLDLMVQC----DV----RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG----CKHD---DFSYNILI  304 (400)
Q Consensus       241 ~~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~  304 (400)
                      +++.+ +..++.++...    .+    +.|...|...+..|.+..+.+.|..+..-+....    +.|+   .+-|..+.
T Consensus       326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~  405 (625)
T KOG4422|consen  326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF  405 (625)
T ss_pred             CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence            88754 44444444332    12    2345667778888888899888888877664321    2222   23456677


Q ss_pred             HHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC
Q 015811          305 NGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRP  381 (400)
Q Consensus       305 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  381 (400)
                      .+.+.....+.-...|+.|.-.-+-|+..+...++++....+.++-..++|.+++..|..........++..+++..
T Consensus       406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k  482 (625)
T KOG4422|consen  406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK  482 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence            77788888999999999999887788999999999999999999999999999998886666665556666666544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=6e-15  Score=138.54  Aligned_cols=345  Identities=10%  Similarity=-0.025  Sum_probs=182.0

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-c-CCccHHHHHHHHHHHHhcCC---HHH
Q 015811           25 KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-C-FAPNVVTFTSLIKGLCAESR---IVE   99 (400)
Q Consensus        25 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~   99 (400)
                      +...++.+.+..|.+.. +-+......+.....+.|+.++|.++++..... + ..++......++..|.+.+.   ..+
T Consensus       356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  434 (987)
T PRK09782        356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK  434 (987)
T ss_pred             CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence            45555555555555432 224555555555556666666666666666552 1 11223333345555555443   222


Q ss_pred             HHHH----------------------HHHHHHc-CC-CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccc
Q 015811          100 AAAL----------------------FTKLKAF-GC-EP--NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF  153 (400)
Q Consensus       100 a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  153 (400)
                      +..+                      .+..... +. ++  +...|..+..++.. ++.++|+..+.+....        
T Consensus       435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------  505 (987)
T PRK09782        435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------  505 (987)
T ss_pred             HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------
Confidence            2211                      1111111 11 22  44555555555554 5666666666655543        


Q ss_pred             cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 015811          154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI  233 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  233 (400)
                      .|+......+...+...|++++|...|+++...  +|+...+..+..++.+.|++++|...++...+.. +.....+..+
T Consensus       506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L  582 (987)
T PRK09782        506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL  582 (987)
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH
Confidence            233333333334445666777777666665443  2333444455556666667777777666666543 1122222222


Q ss_pred             HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811          234 MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV  313 (400)
Q Consensus       234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  313 (400)
                      .......|++++|...++...+..  |+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|++
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~  659 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI  659 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence            233334467777777776666543  345666666666666777777777776666654 44555666666666666777


Q ss_pred             HHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHhhcCCcchhhHh
Q 015811          314 EEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT-CTYRTFIDGLCVRPQVRFTYA  388 (400)
Q Consensus       314 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~  388 (400)
                      ++|+..+++..+... -+...+..+..++...|++++|+..+++..+.  .|+. .+.........+..+++.+.+
T Consensus       660 eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        660 AQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            777776666665421 24455666666666667777777766666653  2332 223333334444444554444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=2.1e-14  Score=134.99  Aligned_cols=228  Identities=10%  Similarity=-0.026  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      ..|..+..++.. ++.++|...+.+....  .|+......+...+...|++++|...++++...        +|+...+.
T Consensus       478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~~~a~~  546 (987)
T PRK09782        478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--------DMSNEDLL  546 (987)
T ss_pred             HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCcHHHH
Confidence            334444444433 4444444444444333  233222222222333444555555444444332        12222233


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (400)
                      .+...+.+.|++++|...++...+.. +.+...+..+.......|++++|...+++..+..  |+...+..+..++.+.|
T Consensus       547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG  623 (987)
T PRK09782        547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRH  623 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCC
Confidence            33444444455555555444444332 1111112122222223344555555554444432  23344444444444455


Q ss_pred             CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811          242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN  321 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  321 (400)
                      ++++|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...++
T Consensus       624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5555555554444443 2333444444444444455555555554444432 2334444444444445555555555554


Q ss_pred             hhhh
Q 015811          322 ELPF  325 (400)
Q Consensus       322 ~~~~  325 (400)
                      +..+
T Consensus       702 ~Al~  705 (987)
T PRK09782        702 LVID  705 (987)
T ss_pred             HHHh
Confidence            4443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.78  E-value=4.2e-18  Score=140.65  Aligned_cols=262  Identities=14%  Similarity=0.101  Sum_probs=98.2

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      .+...+.+.|++++|++++++..... .+.+...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            45777778888888888885544332 2335555666666667778888888888888776533 55566666666 677


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811           95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD  174 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  174 (400)
                      +++++|.+++....+.  .+++..+..++..+...++++++.++++.+.....     .+.+...|..+...+.+.|+++
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~  163 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD  163 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence            8888888877766554  35566667777777888888888888887664332     3456677777778888888888


Q ss_pred             HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      +|++.+++..+.. +.|......++..+...|+.+++..++....+.. +.++..+..+..+|...|+.++|..+++...
T Consensus       164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence            8888888887763 2246667777777888888888777777776653 4566667777788888888888888888877


Q ss_pred             hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          255 QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                      +.. +.|+.....+..++...|+.++|.++..++.
T Consensus       242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHS-TT-HHHHHHHHHHHT----------------
T ss_pred             ccc-ccccccccccccccccccccccccccccccc
Confidence            754 5577777777888888888888887776654

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=8.4e-15  Score=127.22  Aligned_cols=289  Identities=8%  Similarity=-0.042  Sum_probs=212.8

Q ss_pred             HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCChHH
Q 015811           57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI--TYNTLINGLCRTGHTIV  134 (400)
Q Consensus        57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~  134 (400)
                      ...|+++.|.+.+.+..+.... ....+-....++...|+.+.|.+.+.+..+.  .|+..  ........+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence            4689999999999888776422 2333445567788889999999999998765  34543  33445788888999999


Q ss_pred             HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH-HHHHHH---HhcCCHHH
Q 015811          135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYT-SLIHGF---CHANDWNE  210 (400)
Q Consensus       135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~  210 (400)
                      |...++.+.+..       |-+......+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+.
T Consensus       172 Al~~l~~l~~~~-------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~  243 (409)
T TIGR00540       172 ARHGVDKLLEMA-------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE  243 (409)
T ss_pred             HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999875       557778889999999999999999999999988654 333232 111221   23333344


Q ss_pred             HHHHHHHHHHCCC---CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH--H-HHHHHHHHcCCChHHHHHH
Q 015811          211 AKGLLIEMVDQGV---QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT--Y-NTLMDGFCLTGKINRVKEL  284 (400)
Q Consensus       211 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~  284 (400)
                      ..+.+..+.+...   +.+...+..+...+...|+.++|.+++++..+..  |+...  + ..........++.+.+.+.
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~  321 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL  321 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence            4445555554421   1367788888899999999999999999998864  33321  1 1122223445788888999


Q ss_pred             HHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          285 FVSMESMGCKHDD--FSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       285 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      ++...+.. +.|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus       322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88887764 4455  66778999999999999999999954443347899889999999999999999999999864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.76  E-value=7.9e-15  Score=126.69  Aligned_cols=284  Identities=11%  Similarity=0.033  Sum_probs=198.8

Q ss_pred             cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChHHHH
Q 015811           59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN--TLINGLCRTGHTIVAL  136 (400)
Q Consensus        59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~  136 (400)
                      .|+++.|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+.  .|+.....  .....+...|++++|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            588888887777765542121 222333345557888888888888888765  45554333  3356777888888888


Q ss_pred             HHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHH
Q 015811          137 NLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-------VTYTSLIHGFCHANDWN  209 (400)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~  209 (400)
                      ..++++.+..       |-++.....+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+
T Consensus       174 ~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~  246 (398)
T PRK10747        174 HGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE  246 (398)
T ss_pred             HHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            8888888765       556777888888888888999888888888877544222       12223333333444455


Q ss_pred             HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          210 EAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                      ...++++.+.+. .+.++.....+...+...|+.++|.++++...+.  +++....  ++.+....++.+++.+..+...
T Consensus       247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~l  321 (398)
T PRK10747        247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQI  321 (398)
T ss_pred             HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence            555555555332 2446667777888888888888888888888773  4454322  2333345588888888888887


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          290 SMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       290 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      +.. +.|+..+..+...+.+.+++++|.+.|+.+.+.  .|+..++..+...+.+.|+.++|.+++++-..
T Consensus       322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            764 556677788888888888888888888888876  68888888888888888888888888887653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.76  E-value=1.5e-14  Score=124.92  Aligned_cols=284  Identities=13%  Similarity=0.111  Sum_probs=221.2

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH--HHHHHHHhcCCHHHH
Q 015811           24 NKHYDTVLSLFKRLNSIGLFPDLYT-YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT--SLIKGLCAESRIVEA  100 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a  100 (400)
                      .|+++.|.+.+....+..  +++.. |.....+..+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            699999998888766542  23333 333345558899999999999999886  44543332  446788899999999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh------hhHHHHHHHHHhcCChH
Q 015811          101 AALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT------VTYSIIIDGLCKEGFVD  174 (400)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~  174 (400)
                      ...++++.+.. +-++.....+...|.+.|++++|.+++..+.+...     ..+..      .+|..++.......+.+
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~~~~~~~l~~~a~~~l~~~~~~~~~~~  246 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GDEEHRAMLEQQAWIGLMDQAMADQGSE  246 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            99999999886 55778888999999999999999999999998762     11111      13333444444555666


Q ss_pred             HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ...++++.+.+. .+.+......+...+...|+.++|...+++..+.  +++...  .++.+....++.+++.+..+...
T Consensus       247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~l  321 (398)
T PRK10747        247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQI  321 (398)
T ss_pred             HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHH
Confidence            777777776543 3457788889999999999999999999999884  445422  23344456699999999999998


Q ss_pred             hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          255 QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      +.. +-|+..+..+...+...+++++|.+.|+...+.  .|+...+..+..++.+.|+.++|..++++...
T Consensus       322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            875 567778889999999999999999999999986  68999999999999999999999999998754

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=9.6e-15  Score=126.87  Aligned_cols=285  Identities=12%  Similarity=0.002  Sum_probs=207.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChh--hHHHHHHHHHh
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVI-TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV--TYSIIIDGLCK  169 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~  169 (400)
                      ..|+++.|.+.+.+..+.  .|+.. .+-....+....|+.+.|.+.+.+..+..        |+..  .-......+..
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILLA  165 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHHH
Confidence            689999999999888776  34443 33445677788899999999999987643        4433  33445788889


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH---HhcCCchhH
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNEL---CKNGKMDNA  246 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a  246 (400)
                      .|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.++.++......-..++   ...+..+.+
T Consensus       166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999875 3366788889999999999999999999999886543322211111222   333333334


Q ss_pred             HHHHHHHHhCCC---CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 015811          247 SRLLDLMVQCDV---RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS---YNILINGYCKNKEVEEALSLY  320 (400)
Q Consensus       247 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~  320 (400)
                      ...+..+.+...   +.+...+..++..+...|+.++|...+++..+..  |+...   ...........++.+.+...+
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~  322 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI  322 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence            445555544321   2377888889999999999999999999998864  33331   122222234457888899999


Q ss_pred             hhhhhCCCCcC-H--HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811          321 NELPFKGIKPT-V--VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG  392 (400)
Q Consensus       321 ~~~~~~~~~p~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  392 (400)
                      ++..+.  .|+ +  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|...++.
T Consensus       323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888766  333 3  556688889999999999999999655444678998899999999999999999877764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=7e-18  Score=139.34  Aligned_cols=257  Identities=14%  Similarity=0.122  Sum_probs=61.6

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcc-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811           53 INCFCKMGQVSLGFVIFGRILRSC-FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH  131 (400)
Q Consensus        53 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  131 (400)
                      ...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +-++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            444555555555555554333222 12233344444444444555555555555555443 1233344444444 34555


Q ss_pred             hHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHH
Q 015811          132 TIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN-LNPNVVTYTSLIHGFCHANDWNE  210 (400)
Q Consensus       132 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~  210 (400)
                      +++|.+++....+.        .+++..+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++
T Consensus        93 ~~~A~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~  164 (280)
T PF13429_consen   93 PEEALKLAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK  164 (280)
T ss_dssp             ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred             cccccccccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            55555555443332        1233444444455555555555555555544321 12333444444445555555555


Q ss_pred             HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811          211 AKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES  290 (400)
Q Consensus       211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  290 (400)
                      |+..+++..+.. |.|......++..+...|+.+++..++....+.. +.++..+..+..++...|+.++|...+++..+
T Consensus       165 A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  165 ALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence            555555555442 2233444444444555555555444444444332 23333444444555555555555555555444


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 015811          291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNE  322 (400)
Q Consensus       291 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  322 (400)
                      .. +.|+.....+..++...|+.++|..+.++
T Consensus       243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HS-TT-HHHHHHHHHHHT--------------
T ss_pred             cc-ccccccccccccccccccccccccccccc
Confidence            32 33444444445555555555555544444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=5.4e-15  Score=120.88  Aligned_cols=364  Identities=13%  Similarity=0.110  Sum_probs=244.6

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC------------c
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA------------P   79 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~   79 (400)
                      ...+.+...+.+.|+++.|+..|+...+.  .|+..+-..++-++...|+.++..+.|.+|+.....            |
T Consensus       277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp  354 (840)
T KOG2003|consen  277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP  354 (840)
T ss_pred             HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence            34555566678889999999999988775  478776666666777789999999999998864322            2


Q ss_pred             cHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHcCCCCChhh-------------H--------HHHHHHHHhcCC
Q 015811           80 NVVTFTSLIK-----GLCAES--RIVEAAALFTKLKAFGCEPNVIT-------------Y--------NTLINGLCRTGH  131 (400)
Q Consensus        80 ~~~~~~~l~~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~  131 (400)
                      +....+..+.     -.-+.+  +.++++-.-.+++.--+.|+-..             +        ..-...+.+.|+
T Consensus       355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d  434 (840)
T KOG2003|consen  355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD  434 (840)
T ss_pred             chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence            3333332221     111111  11222221122221111222110             0        011224678899


Q ss_pred             hHHHHHHHHHHHcCCCccccc-------------------------ccCChhhHHHHH-----HHHHhcCChHHHHHHHH
Q 015811          132 TIVALNLFKEMTNGNGEIGVV-------------------------FKPNTVTYSIII-----DGLCKEGFVDKAKELFL  181 (400)
Q Consensus       132 ~~~a~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~  181 (400)
                      ++.|+++++-+..........                         +..+..-||.-.     ......|++++|.+.|+
T Consensus       435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk  514 (840)
T KOG2003|consen  435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK  514 (840)
T ss_pred             HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence            999999988877655311000                         000111111111     11223688999999999


Q ss_pred             HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc
Q 015811          182 QMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN  261 (400)
Q Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  261 (400)
                      +.....-.-....|+ +.-.+-..|+.++|++.|-++... +..+..++..+...|....++..|++++...... ++.|
T Consensus       515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d  591 (840)
T KOG2003|consen  515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND  591 (840)
T ss_pred             HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence            988653222222333 233456779999999999887654 2336677888888999999999999999887665 5778


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHH
Q 015811          262 AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHG  341 (400)
Q Consensus       262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  341 (400)
                      +..+..|...|-+.|+-..|.+.+-.--+. .+.+..+...|...|....-+++|+.+|++..-  ++|+..-|..++..
T Consensus       592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias  668 (840)
T KOG2003|consen  592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS  668 (840)
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence            999999999999999999998877655444 367888888899999999999999999998764  48999999998876


Q ss_pred             H-hccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcch
Q 015811          342 L-FEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVR  384 (400)
Q Consensus       342 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  384 (400)
                      | .+.|++.+|..++++.... ++-|...+..|++.+...|-.+
T Consensus       669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d  711 (840)
T KOG2003|consen  669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD  711 (840)
T ss_pred             HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence            5 5589999999999998754 5668888888999888877543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.2e-13  Score=107.98  Aligned_cols=287  Identities=13%  Similarity=0.114  Sum_probs=222.8

Q ss_pred             cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCh
Q 015811           59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV------ITYNTLINGLCRTGHT  132 (400)
Q Consensus        59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~  132 (400)
                      +++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|+++.+.+.+.   ||.      .+...|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            567899999999999864 335666778889999999999999999998864   443      2345567778889999


Q ss_pred             HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCH
Q 015811          133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHANDW  208 (400)
Q Consensus       133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~  208 (400)
                      +.|+.+|..+.+.+       ..-......++..|-...+|++|+++-+++.+.+..+..    ..|.-+...+....+.
T Consensus       124 DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         124 DRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             hHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            99999999998765       344567788999999999999999999988877544432    3456666677777889


Q ss_pred             HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811          209 NEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM  288 (400)
Q Consensus       209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  288 (400)
                      +.|..++.+..+.+ +.+...--.+.......|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+.++
T Consensus       197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         197 DRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999998875 33455555677888999999999999999999876666778889999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc---cchHHHHHHHHHHHhhC
Q 015811          289 ESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE---IRQAERALKLFVEMQGN  361 (400)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~  361 (400)
                      .+..  +....-..+.+.-......+.|..++.+-...  +|+...+..++..-..   .|...+.+.++++|...
T Consensus       276 ~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         276 METN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            8864  34444455555555566677777777666655  7999999999886543   45577778888888743

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=1e-14  Score=119.32  Aligned_cols=224  Identities=13%  Similarity=0.084  Sum_probs=164.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH------------------------------------HHHHhcCC
Q 015811          164 IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLI------------------------------------HGFCHAND  207 (400)
Q Consensus       164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~~~  207 (400)
                      ..-+.+.|+++.|.+++.-..+..-..-...-+.|-                                    .....+|+
T Consensus       426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence            446789999999999988776542211111111110                                    00113467


Q ss_pred             HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Q 015811          208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVS  287 (400)
Q Consensus       208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  287 (400)
                      +++|.+.+++.+..... ....+..+.-.+-..|++++|++.|-++... +..+..++..+...|....+...|.+++.+
T Consensus       506 ~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             HHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            88888888888765322 1222222334567789999999998776543 234667778888889889999999999988


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh
Q 015811          288 MESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT  367 (400)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  367 (400)
                      .... ++.|+..++.|...|-+.|+-..|.+.+-+--.. ++-|..+...|...|....-+++++.+|++.--  +.|+.
T Consensus       584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~  659 (840)
T KOG2003|consen  584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ  659 (840)
T ss_pred             hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence            7765 4778999999999999999999999877655433 455788888899999999999999999998654  78999


Q ss_pred             hhHHHHHHHh-hcCCcchhhHhhhhCC
Q 015811          368 CTYRTFIDGL-CVRPQVRFTYARRKGN  393 (400)
Q Consensus       368 ~~~~~l~~~~-~~~g~~~~a~~~~~~~  393 (400)
                      .-|..++..| .++|+++.|+.+++.+
T Consensus       660 ~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  660 SKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            9999888755 4799999999999865

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.71  E-value=3.7e-13  Score=118.98  Aligned_cols=344  Identities=14%  Similarity=0.120  Sum_probs=262.8

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+..+|..|...|-+.|+.+++...+-.+.-.. +.|...|..+.....+.|.+++|.-.|.+.++.. +++...+--
T Consensus       169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~e  246 (895)
T KOG2076|consen  169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYE  246 (895)
T ss_pred             CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHH
Confidence            46788999999999999999999998776655444 5577999999999999999999999999999986 446666666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVI----TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      -...|-+.|+...|.+.|.++.....+.|..    .....++.+...++-+.|++.++.......     -..+...++.
T Consensus       247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~-----~~~~~ed~ni  321 (895)
T KOG2076|consen  247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK-----DEASLEDLNI  321 (895)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc-----ccccccHHHH
Confidence            7888999999999999999999874222222    223346667778888999999988877432     2456678889


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 015811          163 IIDGLCKEGFVDKAKELFLQMKYEN---------------------------LNPNVVTYTSLIHGFCHANDWNEAKGLL  215 (400)
Q Consensus       163 l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~  215 (400)
                      ++..+.+...++.+......+....                           ..++... -.++-++.+.+..+....+.
T Consensus       322 ~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll  400 (895)
T KOG2076|consen  322 LAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALL  400 (895)
T ss_pred             HHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHH
Confidence            9999999999999999888776521                           1222222 12333445555555555566


Q ss_pred             HHHHHCCC--CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 015811          216 IEMVDQGV--QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC  293 (400)
Q Consensus       216 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  293 (400)
                      ..+.+..+  .-+...|..+..+|...|++++|..+|..+......-+...|-.+..+|...|.++.|...|+.+.... 
T Consensus       401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-  479 (895)
T KOG2076|consen  401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-  479 (895)
T ss_pred             HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            66666653  335567888999999999999999999999987656667899999999999999999999999999875 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh--------CCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          294 KHDDFSYNILINGYCKNKEVEEALSLYNELPF--------KGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      +.+...-..|...+.+.|+.++|.++++.+..        .+..|+..........+...|+.++-+.....|+
T Consensus       480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  480 PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            45566667788889999999999999998652        2344555555556667778888777555555544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=4.7e-13  Score=107.86  Aligned_cols=293  Identities=11%  Similarity=0.068  Sum_probs=211.5

Q ss_pred             HHHHHHc--cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           17 LLGCLAK--NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        17 l~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      +..++.+  .|+|.+|.++..+-.+.+ +.....|..-..+.-+.|+.+.+-.++.+..+....++....-+..+.....
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            3444443  799999999999987776 4455667777888889999999999999999875566777888888999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC-------hhhHHHHHHHH
Q 015811           95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN-------TVTYSIIIDGL  167 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~  167 (400)
                      |+...|..-++++.+.+ +..+........+|.+.|++.+...++..+.+.+.      -.+       ..+|..+++-.
T Consensus       167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~------l~~~e~~~le~~a~~glL~q~  239 (400)
T COG3071         167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL------LSDEEAARLEQQAWEGLLQQA  239 (400)
T ss_pred             CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC------CChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999886 66788889999999999999999999999998772      222       24566666666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      ...+..+.-...++..... ...++..-..++.-+.+.|+.++|.++..+..+++..|.   . ...-.+.+-++.+.-.
T Consensus       240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~  314 (400)
T COG3071         240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLI  314 (400)
T ss_pred             hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHH
Confidence            5555555555566655433 333555666677777777777777777777777654443   1 1122345566666666


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      +..+.-.+.. +.++..+..|...|.+.+.+.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus       315 k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         315 KAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6665555443 344566777777777777777777777766665  56777777777777777777777777766553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=2.3e-13  Score=106.46  Aligned_cols=294  Identities=16%  Similarity=0.119  Sum_probs=223.3

Q ss_pred             ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHHHHHHHHhcCCHHH
Q 015811           23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTSLIKGLCAESRIVE   99 (400)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~   99 (400)
                      -+.+.++|.++|-+|.+.. +.+..+..++.+.+.+.|..++|+.+.+.+.++.--+.   ......|.+-|...|-++.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            3678999999999999854 44667888999999999999999999999998621111   2344557778999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC-hhhHHHHHHHHHhcCChHHHHH
Q 015811          100 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN-TVTYSIIIDGLCKEGFVDKAKE  178 (400)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~  178 (400)
                      |+++|..+.+.+ ..-......|+..|-...+|++|++.-+++...++..   .... ...|--+...+....+.+.|..
T Consensus       126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~eIAqfyCELAq~~~~~~~~d~A~~  201 (389)
T COG2956         126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRVEIAQFYCELAQQALASSDVDRARE  201 (389)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            999999998765 4556778889999999999999999999888765210   0001 1334455556667789999999


Q ss_pred             HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 015811          179 LFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV  258 (400)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  258 (400)
                      ++.+..+.+. ..+..--.+.+.....|+++.|.+.++.+.+++..--+.+...|..+|...|++++....+..+.+.. 
T Consensus       202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-  279 (389)
T COG2956         202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-  279 (389)
T ss_pred             HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence            9999988742 24455556778888999999999999999998766566788889999999999999999999988864 


Q ss_pred             CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHhhhhhC
Q 015811          259 RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN---KEVEEALSLYNELPFK  326 (400)
Q Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~  326 (400)
                       +....-..+........-.+.|...+.+-...  +|+...+..++......   |...+....++.|...
T Consensus       280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence             33444444544444455566666666655554  69999999999887643   4466666777777643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.69  E-value=7.7e-13  Score=106.65  Aligned_cols=286  Identities=11%  Similarity=0.034  Sum_probs=203.4

Q ss_pred             cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 015811           59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL  138 (400)
Q Consensus        59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  138 (400)
                      .|++.+|.++..+-.+.+.. ....|..-..+.-..|+.+.+-+++.+..+..-.++....-+........|+...|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            57888888888887776544 34455556677777888888888888887652244555666677777888888888888


Q ss_pred             HHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHHHH
Q 015811          139 FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-------VTYTSLIHGFCHANDWNEA  211 (400)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a  211 (400)
                      ++++....       +.++.......++|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-
T Consensus       176 v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL  248 (400)
T COG3071         176 VDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL  248 (400)
T ss_pred             HHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            88887765       566777888888888888888888888888887755443       3455555555555555554


Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          212 KGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      ...+++.... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|.   ...+ -.+.+.++...-.+..+.-.+.
T Consensus       249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh
Confidence            4555554433 344566667777778888888888888888877765554   2222 2345666776666666665544


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          292 GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       292 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      . +.++..+.+|...|.+.+.|.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.++.++...
T Consensus       324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3 445577788888888888888888888877665  67888888888888888888888888877653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.6e-14  Score=121.38  Aligned_cols=282  Identities=12%  Similarity=0.067  Sum_probs=144.6

Q ss_pred             ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 015811           61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC--EPNVITYNTLINGLCRTGHTIVALNL  138 (400)
Q Consensus        61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  138 (400)
                      +..+|...|+.+... +.-+..+...+.++|...+++++|.++|+.+.+...  .-+...|.+.+-.+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            345555556553333 222334445555666666666666666666654410  0133444444433211    111222


Q ss_pred             H-HHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 015811          139 F-KEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLI  216 (400)
Q Consensus       139 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  216 (400)
                      + +.+.+..       +..+.+|-.+..+|.-.++.+.|++.|++..+.  .| ...+|+.+..-+.....+|.|...|+
T Consensus       409 Laq~Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr  479 (638)
T KOG1126|consen  409 LAQDLIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFR  479 (638)
T ss_pred             HHHHHHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence            2 2222222       344556666666666666666666666666553  22 44555555555555666666666666


Q ss_pred             HHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 015811          217 EMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD  296 (400)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  296 (400)
                      ..+... +-+...|.-+...|.+.++++.|+-.|+++.+.+ +.+......+...+.+.|+.++|+++++++...+ +.|
T Consensus       480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn  556 (638)
T KOG1126|consen  480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKN  556 (638)
T ss_pred             hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCC
Confidence            554321 1122233334455666666666666666666554 3344555555555666666666666666665554 223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          297 DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       297 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                      +-.--.-+..+...+++++|+..++++.+.  .|+ ...+..+...|.+.|+.+.|+..|--+.+.
T Consensus       557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  557 PLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             chhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            333333444555556666666666666554  333 334444555666666666666666655543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.69  E-value=5e-12  Score=108.24  Aligned_cols=360  Identities=8%  Similarity=-0.031  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      +|..-...|.+.+-++-|+.+|...++.. +-+...|......--..|..+.-..++++....- +-....|......+-
T Consensus       518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW  595 (913)
T ss_pred             HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence            33344444444444444444444444321 2233344444443334444444444444444431 112333333334444


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF  172 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (400)
                      ..|+...|..++....+.. +-+...|..-+..-..+.+++.|..+|.+....        .|+...|..-+...--.++
T Consensus       596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--------SGTERVWMKSANLERYLDN  666 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhh
Confidence            4455555555444444442 223344444444444444555555555444442        2344444444444444444


Q ss_pred             hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHH
Q 015811          173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL  252 (400)
Q Consensus       173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  252 (400)
                      .++|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++-....|-.+...--+.|.+-.|..+++.
T Consensus       667 ~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildr  744 (913)
T KOG0495|consen  667 VEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDR  744 (913)
T ss_pred             HHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence            55555555444433 1111233444444444444444444444333222 122233333344444444455555555555


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCH
Q 015811          253 MVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTV  332 (400)
Q Consensus       253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~  332 (400)
                      ..-.+ +.+...|-..|+.-.+.|+.+.|..++.+..+. ++.+...|..-|....+.++-......+++.     .-|+
T Consensus       745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dp  817 (913)
T KOG0495|consen  745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDP  817 (913)
T ss_pred             HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCc
Confidence            44443 334445555555555555555555555544443 2334444444444444444433333332222     3366


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          333 VTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       333 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      +..-.+...+....++++|.+.|.+.++.+.. .-.+|.-+..-+.++|.-++-.++++..
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            66667777788888899999999998875422 3457888888888899777777766665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=5.5e-14  Score=120.25  Aligned_cols=284  Identities=14%  Similarity=0.077  Sum_probs=174.1

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC--CccHHHHHHHHHHHHhcCCHHHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF--APNVVTFTSLIKGLCAESRIVEAAAL  103 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  103 (400)
                      +..+|+..|+.+... +.-+..+...+..+|...+++++|.++|+.+.+..+  .-+..+|.+.+.-+-+.    -++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            456677777774443 233345566667777777777777777777766421  12556666666543222    11222


Q ss_pred             H-HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811          104 F-TKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ  182 (400)
Q Consensus       104 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  182 (400)
                      + +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+       +....+|+.+..-+....++|.|...|+.
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~  480 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRK  480 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence            2 2222222 4456777777777777777777777777777654       33566777777777777777777777777


Q ss_pred             HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH
Q 015811          183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA  262 (400)
Q Consensus       183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  262 (400)
                      .+.... .+-..|--+...|.+.++++.|+-.|+++.+.+ +.+.+....+...+.+.|+.++|+.+++++...+ +.|+
T Consensus       481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~  557 (638)
T KOG1126|consen  481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNP  557 (638)
T ss_pred             hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCc
Confidence            664311 122333345566677777777777777776654 3345555566666777777777777777776655 3344


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ..--.-+..+...+++++|+..++++++.- +.+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            443344455566677777777777776652 445556666777777777777777777666655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=7.8e-13  Score=108.52  Aligned_cols=164  Identities=13%  Similarity=0.054  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 015811          157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNE  236 (400)
Q Consensus       157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  236 (400)
                      +.|+..+.+.|+-.++.++|...|+...+.+. .....|+.+..-|....+...|.+.++...+.. +.|-..|..+.++
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa  407 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA  407 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence            34444455555555555556655655555431 133445555555555555555555555555543 3355555555555


Q ss_pred             HHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015811          237 LCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEA  316 (400)
Q Consensus       237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  316 (400)
                      |.-.+.+.-|+-.|++..+.. +-|+..|.+|..+|.+.++.++|++.|......| ..+...+..|...|-+.++.++|
T Consensus       408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence            555555555555555555543 4455555555666655566666666665555544 22445555555555555555555


Q ss_pred             HHHHhhhh
Q 015811          317 LSLYNELP  324 (400)
Q Consensus       317 ~~~~~~~~  324 (400)
                      ...+++-+
T Consensus       486 a~~yek~v  493 (559)
T KOG1155|consen  486 AQYYEKYV  493 (559)
T ss_pred             HHHHHHHH
Confidence            55555443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.7e-12  Score=104.03  Aligned_cols=287  Identities=11%  Similarity=0.033  Sum_probs=216.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc-CChhhHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK-PNTVTYSIIIDGL  167 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~  167 (400)
                      .++....+.+++.+-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+     .. .|.++|+.++-+ 
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~dmdlySN~LYv-  308 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLDDMDLYSNVLYV-  308 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----CcchhHHHHhHHHHH-
Confidence            44555566777777777777777665555555566666778899999999999988752     22 245666666533 


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                       +..+..-  ..+.+-...-.+.-+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+..-|....+...|.
T Consensus       309 -~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  309 -KNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             -HhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence             3222221  111111111012234677777888888899999999999999875 345678888899999999999999


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG  327 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  327 (400)
                      +-++.+.+.. +.|-..|-.|.++|.-.+.+.=|+-.|++..... |.|+..|.+|..+|.+.++.++|+..|.+....|
T Consensus       385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999999987 7788999999999999999999999999999875 6789999999999999999999999999998765


Q ss_pred             CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh----CCCCCChh--hHHHHHHHhhcCCcchhhHh
Q 015811          328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG----NDVAADTC--TYRTFIDGLCVRPQVRFTYA  388 (400)
Q Consensus       328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~g~~~~a~~  388 (400)
                      - .+...+..|...|-+.++.++|...|++.++    .|...+..  .-.-|..-+.+.+++++|..
T Consensus       463 d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  463 D-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3 3668899999999999999999999988764    23332222  22235556778999999866

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.63  E-value=9.1e-11  Score=100.77  Aligned_cols=338  Identities=12%  Similarity=0.005  Sum_probs=161.7

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHH----HhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRL----NSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NV   81 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~   81 (400)
                      |.+..+|.+-...=-.+|+.+...+++.+-    ...|+.-+...|..=...|-..|..-.+..+....+..|+.-  -.
T Consensus       437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~  516 (913)
T KOG0495|consen  437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK  516 (913)
T ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence            334444444443334444444444444332    223444444444444444444444444444444444333221  12


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      .+|..-...|.+.+.++-|..+|...++.- +.+...|......=-..|..++...+|++....-       +.....|-
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-------pkae~lwl  588 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-------PKAEILWL  588 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------CcchhHHH
Confidence            234444444444444454555554444331 2233334333333333444555555555554432       33334444


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (400)
                      .....+-..|+...|..++..+.+... .+...|..-+..-..+.+++.|..+|.+....  .|+...|..-+...--.+
T Consensus       589 M~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld  665 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD  665 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence            444445555666666666665555432 24455555555555556666666666555443  344555554444445555


Q ss_pred             CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811          242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN  321 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  321 (400)
                      +.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|-.+...=-+.|.+-.|..+++
T Consensus       666 ~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild  743 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD  743 (913)
T ss_pred             hHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence            5666666665555531 222344555555555555555555555444433 23334445555555555555666666666


Q ss_pred             hhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          322 ELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       322 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      +.+-++. -+...|-..|+.-.+.|..+.|..+..+.+
T Consensus       744 rarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  744 RARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             HHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5554432 244555555555556666655555554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.63  E-value=1.2e-11  Score=110.57  Aligned_cols=355  Identities=12%  Similarity=0.025  Sum_probs=236.2

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015811           27 YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTK  106 (400)
Q Consensus        27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  106 (400)
                      ++.|.+.|....+.. ++|.-.+..-.......+++..|+.+|...+..++.--+.....+..++.+.|+.+.|...|.+
T Consensus       146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r  224 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER  224 (1018)
T ss_pred             HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence            588888888887654 4455444333334455678889999999877654322222233445677788899999999988


Q ss_pred             HHHcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811          107 LKAFGCEPNVITYNTLINGLCR---TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM  183 (400)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  183 (400)
                      ..+.. +.++.++..|.-.-..   ...+..+..++...-..+       +-++...+.|...|.-.|++..+..+...+
T Consensus       225 alqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-------~~nP~~l~~LAn~fyfK~dy~~v~~la~~a  296 (1018)
T KOG2002|consen  225 ALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-------NENPVALNHLANHFYFKKDYERVWHLAEHA  296 (1018)
T ss_pred             HHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-------CCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            88763 2223333332222222   234556777777766654       567788888888888899999999888888


Q ss_pred             HHcCCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc
Q 015811          184 KYENLN--PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN  261 (400)
Q Consensus       184 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  261 (400)
                      ......  .-...|-.+.++|...|++++|..+|.+..+.........+.-+.+.+...|+++.+...|+.+.+.. +.+
T Consensus       297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~  375 (1018)
T KOG2002|consen  297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN  375 (1018)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence            765311  12345778888888999999999988877765322113344557788889999999999998888764 455


Q ss_pred             HHHHHHHHHHHHcCC----ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh----hCCCCcCHH
Q 015811          262 AFTYNTLMDGFCLTG----KINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP----FKGIKPTVV  333 (400)
Q Consensus       262 ~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~  333 (400)
                      ..+...|...|...+    ..+.|..++.+..+.. +.|...|-.+...+....-+.. +.++..+.    ..+-.+.+.
T Consensus       376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E  453 (1018)
T KOG2002|consen  376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPE  453 (1018)
T ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHH
Confidence            667777777776654    4567777777777654 5577777777777665544433 66666544    344457778


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhC---CCCCChh------hHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGN---DVAADTC------TYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      ..|.+.......|.+.+|...|......   ...+|..      +--.+...+-..++++.|.+.|+.+
T Consensus       454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I  522 (1018)
T KOG2002|consen  454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI  522 (1018)
T ss_pred             HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            8888888888889999999888887644   1223331      2223444555666777777777765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=2.9e-11  Score=99.84  Aligned_cols=131  Identities=16%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      .+...|-..+..=.++..++.|..++++....  -|- ...|...+..--..|++..|.++|+...+.  .|+...|.+.
T Consensus       105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sf  180 (677)
T KOG1915|consen  105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSF  180 (677)
T ss_pred             ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHH
Confidence            34455555566666666666666666666543  232 234455554445567777777777776664  6777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      ++.=.+.+.++.|..++++..-.  .|++.+|......=.+.|+...|..+|....+.
T Consensus       181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~  236 (677)
T KOG1915|consen  181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF  236 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            77777777777777777777654  577777777777777777777777777776653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.5e-11  Score=101.75  Aligned_cols=369  Identities=14%  Similarity=0.035  Sum_probs=241.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      +.....-|.++|++++|++.|....+.  .|+ +..|.....+|...|++++..+--...++.++. -+..+..-.+++-
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE  194 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence            455667788999999999999999886  577 788889999999999999988887777775321 2333444444555


Q ss_pred             hcCCHHHHHH----------------------HHHH---------HHHcC--CCCChhhHHHHHHHHHh--------cC-
Q 015811           93 AESRIVEAAA----------------------LFTK---------LKAFG--CEPNVITYNTLINGLCR--------TG-  130 (400)
Q Consensus        93 ~~~~~~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~l~~~~~~--------~~-  130 (400)
                      ..|++++|+.                      ++.+         +.+.+  +-|+.....+....+..        .+ 
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            5555555432                      2211         11111  12333333333322211        00 


Q ss_pred             -------------------ChHHHHHHHHHHHcCCCcccccccCChh------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          131 -------------------HTIVALNLFKEMTNGNGEIGVVFKPNTV------TYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       131 -------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                                         .+..|.+.+.+-..........-..|..      +...-...+.-.|+.-.+..-|+..+.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                               1111222221111100000000001111      111112223446888899999999887


Q ss_pred             cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHH
Q 015811          186 ENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTY  265 (400)
Q Consensus       186 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  265 (400)
                      .... +...|-.+...|...++.++....|.+....+ +.++.+|..-.+.+.-.+++++|..=|++.+... +-+...|
T Consensus       355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~  431 (606)
T KOG0547|consen  355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY  431 (606)
T ss_pred             cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence            6433 23337777788899999999999999998876 4577788888888888999999999999998865 4456677


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-----CCCcCHH--HHHHH
Q 015811          266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK-----GIKPTVV--TYNTL  338 (400)
Q Consensus       266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~--~~~~l  338 (400)
                      ..+..+..+.+.++++...|++..+. .|..+..|+.....+..+++++.|.+.|+..++.     ++..+..  +...+
T Consensus       432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~  510 (606)
T KOG0547|consen  432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL  510 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence            77777778889999999999999876 3667888999999999999999999999988764     1111222  22222


Q ss_pred             HHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          339 FHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      +..- -.+++..|.+++++..+.+.+ ....+..|...-...|+.++|+++.+
T Consensus       511 l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  511 LVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFE  561 (606)
T ss_pred             hhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            2222 248899999999998875432 34468888888899999999987765

>PRK12370 invasion protein regulator; Provisional

Probab=99.61  E-value=1.8e-12  Score=117.08  Aligned_cols=268  Identities=12%  Similarity=0.026  Sum_probs=182.7

Q ss_pred             CCCHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 015811           43 FPDLYTYSILINCFCK-----MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC---------AESRIVEAAALFTKLK  108 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~  108 (400)
                      ..+...|...+.+...     .++.++|.+.|++.++..+. +...|..+..++.         ..+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            4566666666655322     23467889999998887432 4555665555443         2345789999999998


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 015811          109 AFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL  188 (400)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  188 (400)
                      +.+ +.+..++..+...+...|++++|...|++..+.+       |.+...+..+..++...|++++|...+++..+...
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP  403 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            875 4567778888888888999999999999988865       45667788888889999999999999999887642


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHH
Q 015811          189 NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTL  268 (400)
Q Consensus       189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  268 (400)
                      . +...+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...+..+.... +.+....+.+
T Consensus       404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l  481 (553)
T PRK12370        404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL  481 (553)
T ss_pred             C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence            2 2223334455566788899999999888765422244456777788889999999999998876642 2334445556


Q ss_pred             HHHHHcCCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          269 MDGFCLTGKINRVKELFVSMESMG-CKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       269 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ...|...|  +.|...++.+.+.. ..+....+  +-..+.-.|+.+.+..+ +++.+.
T Consensus       482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence            66667666  47777777665421 12222222  34445556776666655 777665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.57  E-value=5.3e-12  Score=101.93  Aligned_cols=202  Identities=12%  Similarity=0.073  Sum_probs=136.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            35566677777777777777777777776653 2345666667777777777777777777777654 344556666777


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      .+...|++++|.+.+++......     .+.....+..+..++...|++++|...+.+..... +.+...+..+...+..
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  181 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL  181 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence            77777777777777777765321     12234456666677777778888877777776653 2245566677777777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          205 ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      .|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus       182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            77888887777777665 233445555666677777777777777766654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.8e-10  Score=93.43  Aligned_cols=352  Identities=11%  Similarity=0.085  Sum_probs=252.5

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      .|-..+..=-..|++..|.++|++..+-  .|+...|.+.+..-.+-+.++.|..+|+..+-.  .|++..|-...+.=.
T Consensus       143 lWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~  218 (677)
T KOG1915|consen  143 LWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE  218 (677)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH
Confidence            3444444455679999999999998875  799999999999999999999999999999875  589999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcc---------------------
Q 015811           93 AESRIVEAAALFTKLKAF-GCE-PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEI---------------------  149 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------  149 (400)
                      +.|....|..+|+...+. |-. .+...+.+...-=.++..++.|.-+|+-..+.-+..                     
T Consensus       219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g  298 (677)
T KOG1915|consen  219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG  298 (677)
T ss_pred             hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence            999999999999998864 210 111223333322223444444444444333221100                     


Q ss_pred             ----------------cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHH---H
Q 015811          150 ----------------GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-------VTYTSLIHGF---C  203 (400)
Q Consensus       150 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~  203 (400)
                                      ....+.|-.+|-..++.-...|+.+...++|+..+.. ++|-.       ..|..+-.++   .
T Consensus       299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl  377 (677)
T KOG1915|consen  299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL  377 (677)
T ss_pred             hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence                            0002445667777777777888999999999988854 44422       1222222222   2


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH----HhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811          204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNEL----CKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN  279 (400)
Q Consensus       204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  279 (400)
                      ...+.+.+.++++..++. ++-...||..+--.|    .++.++..|.+++...+.  .-|...+|...|..-.+.++++
T Consensus       378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efD  454 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFD  454 (677)
T ss_pred             HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHH
Confidence            457888888999888874 555667776665554    467889999999988765  4677888888888888999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC-CCcCHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015811          280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG-IKPTVVTYNTLFHGLFEIRQAERALKLFVEM  358 (400)
Q Consensus       280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  358 (400)
                      .+..++++.++.+ |-+..+|......-...|+.+.|..+|+-+++.. +......|...|..-...|.++.|..+++++
T Consensus       455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl  533 (677)
T KOG1915|consen  455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL  533 (677)
T ss_pred             HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence            9999999999987 5678889888888889999999999999888652 2223445666677667899999999999998


Q ss_pred             hhCCCCCChhhHHHHHH
Q 015811          359 QGNDVAADTCTYRTFID  375 (400)
Q Consensus       359 ~~~~~~~~~~~~~~l~~  375 (400)
                      ++..  +...+|.++..
T Consensus       534 L~rt--~h~kvWisFA~  548 (677)
T KOG1915|consen  534 LDRT--QHVKVWISFAK  548 (677)
T ss_pred             HHhc--ccchHHHhHHH
Confidence            8643  22335544443

>PRK12370 invasion protein regulator; Provisional

Probab=99.56  E-value=1.2e-11  Score=111.80  Aligned_cols=269  Identities=15%  Similarity=0.069  Sum_probs=188.8

Q ss_pred             CccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 015811           78 APNVVTFTSLIKGLCA-----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC---------RTGHTIVALNLFKEMT  143 (400)
Q Consensus        78 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~  143 (400)
                      ..+...|...+++...     .++.++|...|++..+.. +-+...|..+..++.         ..+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            3455555555544321     234689999999999874 334555665555443         2345789999999999


Q ss_pred             cCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015811          144 NGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV  223 (400)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  223 (400)
                      +..       +.+...+..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+...
T Consensus       332 ~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        332 ELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP  403 (553)
T ss_pred             hcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            876       5677888888889999999999999999999874 33566788888999999999999999999998742


Q ss_pred             CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 015811          224 QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNIL  303 (400)
Q Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  303 (400)
                      . +...+..++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+
T Consensus       404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l  481 (553)
T PRK12370        404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL  481 (553)
T ss_pred             C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence            2 2333444455677789999999999998775423345567778888899999999999999886652 3334455666


Q ss_pred             HHHHHhcCCHHHHHHHHhhhhhC-CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811          304 INGYCKNKEVEEALSLYNELPFK-GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND  362 (400)
Q Consensus       304 ~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  362 (400)
                      ...|...|  ++|...++.+.+. .-.|....+..+  .+.-.|+.+.+..+ +++.+.+
T Consensus       482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence            66777777  4777777776653 112222233333  34445666665555 7777654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=6.3e-11  Score=99.96  Aligned_cols=284  Identities=11%  Similarity=0.024  Sum_probs=200.5

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +......-.+-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-.-+=.++.+.- |..+.+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence            34444455555666788888888888888764 4566666666777778888777766666776653 556778888888


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      -|...|+..+|.+.|.+....+       +.-...|-.+...+.-.+..++|+..+..+-+. ++-...-+.-+.--|.+
T Consensus       321 YYl~i~k~seARry~SKat~lD-------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~  392 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLD-------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR  392 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcC-------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence            8888888888888888877655       333457778888888888888888888777654 11111112223344666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC------CCCCcHHHHHHHHHHHHcCCCh
Q 015811          205 ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC------DVRPNAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~  278 (400)
                      .++.+.|.+.|.+..... |.|+...+.+.-.....+.+.+|..+|+.....      .......+++.|..+|.+.+.+
T Consensus       393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            788888888888777653 556777777777777778888888888766521      0112345677888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811          279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL  342 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  342 (400)
                      ++|+..+++..... +.+..++.++.-.|...|+++.|...|.+.+..  .|+..+...++..+
T Consensus       472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence            88888888887765 667888888888888888888888888887754  67776666666544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.53  E-value=2e-11  Score=98.57  Aligned_cols=201  Identities=14%  Similarity=0.063  Sum_probs=135.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....       +.+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~  101 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDV  101 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHH
Confidence            34556667777777777777777777776653 3345666667777777777777777777777654       345556


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYENL-NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC  238 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  238 (400)
                      +..+...+...|++++|.+.++....... ......+..+...+...|++++|...+.+..... +.+...+..+...+.
T Consensus       102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~  180 (234)
T TIGR02521       102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence            66777777777777777777777765422 1223455566667777777777777777777653 224456666777777


Q ss_pred             hcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811          239 KNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES  290 (400)
Q Consensus       239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  290 (400)
                      ..|++++|...+++..+.. +.+...+..++..+...|+.+.|..+.+.+..
T Consensus       181 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       181 LRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7777777777777776652 44555556666667777777777777766654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=3.4e-12  Score=100.30  Aligned_cols=230  Identities=11%  Similarity=-0.051  Sum_probs=157.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 015811          119 YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL  198 (400)
Q Consensus       119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  198 (400)
                      -+.+.++|.+.|.+.+|.+.++.....        .|-+.||..+.++|.+..++..|+.++.+-.+. ++.++....-+
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~  296 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ  296 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence            345677777777777777777776664        456667777777777777777777777776654 23333334445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811          199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  278 (400)
                      .+.+-..++.++|.++++...+.. +.+......+...|.-.++++.|...+.++.+.|+ -++..|+.+.-+|...+++
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence            666666777777777777777653 44566666666677777777777777777777774 3667777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHH
Q 015811          279 NRVKELFVSMESMGCKHD--DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFV  356 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  356 (400)
                      +-++..|.+....--.|+  ...|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..++.
T Consensus       375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN  453 (478)
T ss_pred             hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence            777777777765432232  345666777777777777777777777665322 45567777666677777777777777


Q ss_pred             HHhh
Q 015811          357 EMQG  360 (400)
Q Consensus       357 ~~~~  360 (400)
                      ....
T Consensus       454 ~A~s  457 (478)
T KOG1129|consen  454 AAKS  457 (478)
T ss_pred             Hhhh
Confidence            6654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.51  E-value=2.7e-10  Score=99.83  Aligned_cols=94  Identities=12%  Similarity=0.069  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811          231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN  310 (400)
Q Consensus       231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  310 (400)
                      ..+.+.|...|++++|.+.++..+++. +..+..|..-.+.+-..|++++|...++.....+ .-|...=+..+..+.+.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence            334444555555555555555555543 2224444444555555555555555555555544 22444444444555555


Q ss_pred             CCHHHHHHHHhhhhhC
Q 015811          311 KEVEEALSLYNELPFK  326 (400)
Q Consensus       311 ~~~~~A~~~~~~~~~~  326 (400)
                      |+.++|..++......
T Consensus       276 ~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  276 GRIEEAEKTASLFTRE  291 (517)
T ss_pred             CCHHHHHHHHHhhcCC
Confidence            5555555555554443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.6e-10  Score=95.88  Aligned_cols=336  Identities=11%  Similarity=0.062  Sum_probs=229.4

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHH------------------H
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFG------------------R   71 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~------------------~   71 (400)
                      +.-|.....+|...|+|+++.+--...++.+  |+ +..+..-..++-+.|++++|+.=..                  +
T Consensus       149 piFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR  226 (606)
T KOG0547|consen  149 PIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAER  226 (606)
T ss_pred             chhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHH
Confidence            6788899999999999999999888887764  44 4566666677777777666542111                  0


Q ss_pred             H------------Hh-cc--CCccHHHHHHHHHHHHhc-------------------------C---CHHHHHHHHHHHH
Q 015811           72 I------------LR-SC--FAPNVVTFTSLIKGLCAE-------------------------S---RIVEAAALFTKLK  108 (400)
Q Consensus        72 ~------------~~-~~--~~~~~~~~~~l~~~~~~~-------------------------~---~~~~a~~~~~~~~  108 (400)
                      .            .+ .+  +-|+.....+....+...                         +   .+..|.+.+.+-.
T Consensus       227 ~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~  306 (606)
T KOG0547|consen  227 VLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEEC  306 (606)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Confidence            0            01 11  224444444444433211                         0   1222222222211


Q ss_pred             Hc-CCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHH
Q 015811          109 AF-GCEPN-----------VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKA  176 (400)
Q Consensus       109 ~~-~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  176 (400)
                      .. -..++           ..+.......+.-.|+...|..-|+......       +.+...|-.+...|....+.++.
T Consensus       307 ~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-------~~~~~lyI~~a~~y~d~~~~~~~  379 (606)
T KOG0547|consen  307 LGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-------PAFNSLYIKRAAAYADENQSEKM  379 (606)
T ss_pred             hhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-------cccchHHHHHHHHHhhhhccHHH
Confidence            10 00111           1222222233445799999999999998875       33344488888889999999999


Q ss_pred             HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811          177 KELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                      .+.|.+..+.+. -++.+|..-.+...-.+++++|..=|++.+... +.+...|..+.-+..+.+.+++++..|++.++.
T Consensus       380 ~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk  457 (606)
T KOG0547|consen  380 WKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK  457 (606)
T ss_pred             HHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987653 366777777777778889999999999998764 335566666666777889999999999999886


Q ss_pred             CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHhhhhhCCCC
Q 015811          257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK-----HDDFSY--NILINGYCKNKEVEEALSLYNELPFKGIK  329 (400)
Q Consensus       257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  329 (400)
                       ++..+..|+.....+..+++++.|.+.|+..++....     .+...+  -.++. +--.+++..|..++++..+.+.+
T Consensus       458 -FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk  535 (606)
T KOG0547|consen  458 -FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK  535 (606)
T ss_pred             -CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch
Confidence             4667889999999999999999999999998775311     112211  12221 12348999999999999876432


Q ss_pred             cCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                       ....+..|...-.+.|+.++|+++|++...
T Consensus       536 -ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  536 -CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             445788888999999999999999998653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.50  E-value=4e-10  Score=98.71  Aligned_cols=294  Identities=11%  Similarity=0.065  Sum_probs=210.6

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc--
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE--   94 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--   94 (400)
                      ....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .+...|..+..+..-.  
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence            456678899999999999885543 344556777888999999999999999999999863 3666666666665322  


Q ss_pred             ---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           95 ---SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        95 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                         .+.+....+|+++...  -|.......+.-.+.....+. .+..++..+...|      +   +.+|+.+-..|...
T Consensus        88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~  156 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDP  156 (517)
T ss_pred             cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcCh
Confidence               3567778889988766  354444444433333323333 3445556666655      2   34666666666655


Q ss_pred             CChHHHHHHHHHHHHc----C----------CCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811          171 GFVDKAKELFLQMKYE----N----------LNPNV--VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM  234 (400)
Q Consensus       171 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  234 (400)
                      ...+-..+++......    +          -+|+.  .++..+...|-..|++++|+++++..+++. +..+..|..-.
T Consensus       157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka  235 (517)
T PF12569_consen  157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA  235 (517)
T ss_pred             hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            5555555666555432    1          12333  344566778889999999999999999884 33467788888


Q ss_pred             HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHH--------HHHHHHH
Q 015811          235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS--------YNILING  306 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~  306 (400)
                      +.+-..|++.+|.+.++.....+ .-|...-+-.+..+.+.|+.++|..++....+.+..|....        ......+
T Consensus       236 rilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a  314 (517)
T PF12569_consen  236 RILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA  314 (517)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987 56777888888999999999999999999987664333221        2456678


Q ss_pred             HHhcCCHHHHHHHHhhhhh
Q 015811          307 YCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       307 ~~~~~~~~~A~~~~~~~~~  325 (400)
                      |.+.|++..|+.-|..+.+
T Consensus       315 ~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  315 YLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            8999999999887766654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=5.4e-12  Score=99.16  Aligned_cols=232  Identities=14%  Similarity=0.024  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC  127 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  127 (400)
                      --+.+..+|.+.|-+.+|.+-++..++.  .|-+.+|..|-++|.+..++..|+.++.+-.+.- +-++.......+.+-
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence            3367888889999999999988888776  5667788888899999999999999998887662 334444455677788


Q ss_pred             hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015811          128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND  207 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  207 (400)
                      ..++.++|.++++...+..       +.+......+...|.-.++++-|+.+|+.+.+.|.. +...|+.+.-+|.-.++
T Consensus       302 am~~~~~a~~lYk~vlk~~-------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ  373 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ  373 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence            8889999999999888765       556667777777788888999999999999988875 78888888888888899


Q ss_pred             HHHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHH
Q 015811          208 WNEAKGLLIEMVDQGVQPN--VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF  285 (400)
Q Consensus       208 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  285 (400)
                      ++-++..|++.+.....|+  ..+|..+.......|++..|.+.|+.....+ ......++.|...-.+.|+++.|..++
T Consensus       374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll  452 (478)
T KOG1129|consen  374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL  452 (478)
T ss_pred             hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence            9999988888876543333  3456667777788899999999998888776 456778888888888999999999999


Q ss_pred             HHHHhc
Q 015811          286 VSMESM  291 (400)
Q Consensus       286 ~~~~~~  291 (400)
                      +.....
T Consensus       453 ~~A~s~  458 (478)
T KOG1129|consen  453 NAAKSV  458 (478)
T ss_pred             HHhhhh
Confidence            888765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3e-10  Score=96.02  Aligned_cols=285  Identities=11%  Similarity=0.053  Sum_probs=228.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+..       |....+
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-------P~~a~s  314 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-------PSKALS  314 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCCcc
Confidence            34445555666778899999999999999875 7788888888889999999988888888888764       677889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK  239 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (400)
                      |-.+.-.|...|..++|.+.|.+....+.. =...|..+...+.-.+.-++|...+...-+. ++-...-+-.+..-|.+
T Consensus       315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~  392 (611)
T KOG1173|consen  315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR  392 (611)
T ss_pred             hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence            999999999999999999999998764321 2467888888999999999999999887764 12223334445567888


Q ss_pred             cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----C--CCCCHHHHHHHHHHHHhcCCH
Q 015811          240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM----G--CKHDDFSYNILINGYCKNKEV  313 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~  313 (400)
                      .++.+.|.++|....... |-|+..++-+.......+.+.+|..+|+.....    +  ...-..+++.|..+|.+.+.+
T Consensus       393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            999999999999998865 678888999988888889999999999987621    1  011334688999999999999


Q ss_pred             HHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhh
Q 015811          314 EEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLC  378 (400)
Q Consensus       314 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (400)
                      ++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.+.  +.|+..+...++..+.
T Consensus       472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            99999999988763 34888899998899999999999999999875  6788877777776543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.47  E-value=9.2e-12  Score=110.15  Aligned_cols=274  Identities=16%  Similarity=0.225  Sum_probs=178.6

Q ss_pred             HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015811           33 LFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC  112 (400)
Q Consensus        33 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  112 (400)
                      .+-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-.+.+.+...|+.++......++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4556667788888888888888888888888887 8887777766677778888888877777776665           


Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCC
Q 015811          113 EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY-ENLNPN  191 (400)
Q Consensus       113 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~  191 (400)
                      .|.+.+|..|..+|...|+... ++..++                 ....+...+...|.-.....++..+.- .+.-||
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd  141 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD  141 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH-HHHHHH-----------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence            5777888888888888887655 222222                 112233344555555555555544321 122333


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015811          192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG  271 (400)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  271 (400)
                      ..   +.+......|.|+.+.+++..+....-. .  .+..+++-+...  ..-..+++.......-.|++.+|..++.+
T Consensus       142 a~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~  213 (1088)
T KOG4318|consen  142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKR  213 (1088)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence            32   3344445567777777777554322100 0  111123222222  22333444333332225788888888888


Q ss_pred             HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccch
Q 015811          272 FCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQ  347 (400)
Q Consensus       272 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  347 (400)
                      -...|+.+.|..++.+|.+.|.+.+...|-.|+-+   .++..-+..+++-|.+.|+.|+..|+...+-.+...|.
T Consensus       214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            88888999999999999888888887777666655   77888888888888888888888888888777777554

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.46  E-value=5.3e-11  Score=105.47  Aligned_cols=245  Identities=14%  Similarity=0.095  Sum_probs=157.5

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .-||-++|..+|.-|+..|+.+.|- +|..|.....+.+...++.++......++.+.+.           .|...+|..
T Consensus        21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~   88 (1088)
T KOG4318|consen   21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN   88 (1088)
T ss_pred             CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence            3478899999999999999999998 9999988777778889999999988989888765           578889999


Q ss_pred             HHHHHHhcCCHHH---HHHHHHHHH----HcCCCCChhh--------------HHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           87 LIKGLCAESRIVE---AAALFTKLK----AFGCEPNVIT--------------YNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        87 l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      |..+|...||...   +.+.+..+.    ..|+-....-              -...+......|.++.+++++..+...
T Consensus        89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs  168 (1088)
T KOG4318|consen   89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS  168 (1088)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            9999999999765   222222211    1221111110              112233333445555555555544332


Q ss_pred             CCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 015811          146 NGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP  225 (400)
Q Consensus       146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  225 (400)
                      ..       ..+  +-.+++-+...  +....++........-.|++.+|..++.+...+|+.+.|..++.+|.+.|++.
T Consensus       169 a~-------~~p--~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi  237 (1088)
T KOG4318|consen  169 AW-------NAP--FQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI  237 (1088)
T ss_pred             cc-------cch--HHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence            21       011  11123333222  22233333332222114777778888887777888888888888888888777


Q ss_pred             CcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC
Q 015811          226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK  277 (400)
Q Consensus       226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  277 (400)
                      +..-|-.++-+   .++...+..++..|.+.|+.|+..|+...+..+...|.
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            77666666544   67777777777777777888888777766666655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.43  E-value=1.8e-08  Score=86.90  Aligned_cols=186  Identities=13%  Similarity=0.083  Sum_probs=129.8

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      ..+.+.+.|..+.-.+....++++|++.|..+...+ +.|...|.-+.-.-++.|+++.......++.+.. +.....|.
T Consensus        70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~  147 (700)
T KOG1156|consen   70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWI  147 (700)
T ss_pred             cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHH
Confidence            345677888888888888888999999998888876 5577778777777778888888888777777763 23556778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH------HHHHhcCChHHHHHHHHHHHcCCCcccccccCChh
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFG-CEPNVITYNTLI------NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV  158 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  158 (400)
                      .+..++.-.|+...|..+++...+.. ..|+...+....      ......|..++|++.+......-       -....
T Consensus       148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-------~Dkla  220 (700)
T KOG1156|consen  148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-------VDKLA  220 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-------HHHHH
Confidence            88888888899999998888887654 235555544322      23445777777777776654431       11222


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811          159 TYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF  202 (400)
Q Consensus       159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (400)
                      .-..-...+.+.+++++|..++..++..  .||...|...+..+
T Consensus       221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~  262 (700)
T KOG1156|consen  221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA  262 (700)
T ss_pred             HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence            2334556777888999999999888876  36666555544433

>PF13041 PPR_2: PPR repeat family

Probab=99.41  E-value=7.6e-13  Score=77.06  Aligned_cols=50  Identities=48%  Similarity=0.794  Sum_probs=30.5

Q ss_pred             cCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811          330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV  379 (400)
Q Consensus       330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (400)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            55566666666666666666666666666666666666666666666553

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=8.1e-13  Score=76.93  Aligned_cols=50  Identities=42%  Similarity=0.805  Sum_probs=39.5

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK   58 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~   58 (400)
                      ||+.+||.+|.+|.+.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67778888888888888888888888888888888888888888877753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.39  E-value=1.5e-09  Score=81.58  Aligned_cols=198  Identities=14%  Similarity=0.026  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811           49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR  128 (400)
Q Consensus        49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  128 (400)
                      ...+.-.|.+.|+...|..-+++.++..+ .+..+|..+...|.+.|..+.|.+.|++..+.. +-+-.+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            34444555666666666666666665532 244455555666666666666666666665553 3344555556666666


Q ss_pred             cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 015811          129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDW  208 (400)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  208 (400)
                      .|++++|...|++......     +..-..+|..+.-+..+.|+++.|...|++..+... -...+...+.......|++
T Consensus       116 qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y  189 (250)
T COG3063         116 QGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDY  189 (250)
T ss_pred             CCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccc
Confidence            6666666666666554332     233345555666666666666666666666555421 1234455555555666666


Q ss_pred             HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          209 NEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      -.|...++.....+. ++..+.-..|+.--..|+.+.+-+.=..+.+
T Consensus       190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            666666665555543 5555555555555566665555554444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.38  E-value=3.5e-10  Score=97.91  Aligned_cols=244  Identities=16%  Similarity=0.106  Sum_probs=154.0

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----c-CCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRS-----C-FAPNVV-TFTSLIKGLCAESRIVEAAALFTKLKAF-----G--  111 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--  111 (400)
                      ..+...+...|...|+++.|..+++..++.     | ..|... ..+.+...|...+++.+|..+|+++...     |  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456777899999999999999999988875     1 123333 3445778899999999999999998753     2  


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHc---C
Q 015811          112 CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT-VTYSIIIDGLCKEGFVDKAKELFLQMKYE---N  187 (400)
Q Consensus       112 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  187 (400)
                      .+.-..+++.|..+|.+.|++++|...++...+..........|.. ..++.+...+...+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            1112356777888899999999998888876553311000011222 23455666777788888888887765432   1


Q ss_pred             CCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C---CCCcccHHHHHHHHHhcCCchhHHHHHHHHHh-
Q 015811          188 LNPN----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQG----V---QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ-  255 (400)
Q Consensus       188 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  255 (400)
                      +.++    ..+++.|...|...|++++|.+++++++...    .   .-....++.+...|.+.+.+++|..+|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            1111    2567777777777777777777777765431    1   11123455566666666666666666654322 


Q ss_pred             ---CC--CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          256 ---CD--VRPNAFTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       256 ---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                         .|  .+....+|..|...|...|+++.|.++.+.+.
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               11  11223455666666666666666666655553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=9.5e-09  Score=83.90  Aligned_cols=289  Identities=10%  Similarity=-0.013  Sum_probs=194.0

Q ss_pred             cCChhhHHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811           59 MGQVSLGFVIFGRILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        59 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                      .++...|...+-.+... -++.|+.....+.+++...|+..+|+..|++....+ +-+........-.+.+.|+.+....
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence            34444444444333332 245577778888888889999999998888887552 1122222223334456778877777


Q ss_pred             HHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          138 LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      +...+....       +-+...|-.-+......++++.|+.+-++.++.+ +.+...+..-...+...++.++|.-.|+.
T Consensus       288 L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~  359 (564)
T KOG1174|consen  288 LMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRT  359 (564)
T ss_pred             HHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHH
Confidence            777766543       2334445455555566778888888888877653 22445555555667778888888888888


Q ss_pred             HHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHH-HHHH-cCCChHHHHHHHHHHHhcCCCC
Q 015811          218 MVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLM-DGFC-LTGKINRVKELFVSMESMGCKH  295 (400)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~  295 (400)
                      .+... +.+..+|.-++.+|...|.+.+|..+-....+. ++.+..++..+. ..+. ...--++|.++++...... |.
T Consensus       360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~  436 (564)
T KOG1174|consen  360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PI  436 (564)
T ss_pred             HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-Cc
Confidence            77653 456788888999999889888888777665553 244555555542 2222 2223467888888777653 22


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          296 DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       296 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                      -....+.+...+...|..+.++.++++....  .||....+.|.+.+...+.+++|+..|......
T Consensus       437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3455677778888888888899988887765  678888888888888888888888888877663

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.1e-08  Score=83.51  Aligned_cols=298  Identities=16%  Similarity=0.049  Sum_probs=220.7

Q ss_pred             HHHHHHHHc--cCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           15 NILLGCLAK--NKHYDTVLSLFKRLNSI-GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        15 ~~l~~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      ..-+.++++  .++...|.+++-.+... -++-|+.....+..++...|+.++|...|++....++. +........-.+
T Consensus       198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL  276 (564)
T KOG1174|consen  198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLL  276 (564)
T ss_pred             HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHH
Confidence            333444443  45555555555444332 34567888999999999999999999999998875321 333333344455


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG  171 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (400)
                      .+.|+.+....+...+.... ..+...|-.-...+....+++.|+.+-++..+.+       +.+...+-.-...+...+
T Consensus       277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALE  348 (564)
T ss_pred             HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhcc
Confidence            67888888888888776542 2344455555666677889999999999988765       456667777778889999


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH-HHHH-hcCCchhHHHH
Q 015811          172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM-NELC-KNGKMDNASRL  249 (400)
Q Consensus       172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~  249 (400)
                      ++++|.-.|+...... +.+..+|.-|+.+|...|.+.+|...-+..... ++.+..+...+. ..+. ...--++|.++
T Consensus       349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence            9999999999988652 346789999999999999999998887776654 244555555542 2222 22334789999


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ++...+.. +.-....+.+...+...|..+.+..+++.....  .||....+.|.+.+...+.+++|.+.|......
T Consensus       427 ~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  427 AEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99887754 333556777888899999999999999998875  689999999999999999999999999998876

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=6.4e-08  Score=82.73  Aligned_cols=370  Identities=13%  Similarity=0.032  Sum_probs=223.5

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES   95 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   95 (400)
                      +=+..+.+++++++|.+...++...+ +.+...+.+=+-++.+.+++++|+.+.+.-...  ..+...+-.=..+..+.+
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence            34566778899999999999999876 556777888788899999999999665543221  111111112234455788


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcc-----------------c----cccc
Q 015811           96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEI-----------------G----VVFK  154 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~----~~~~  154 (400)
                      ..++|+..++-..    +.+..+...-...+.+.|++++|+++|+.+.+.+...                 .    ....
T Consensus        94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~  169 (652)
T KOG2376|consen   94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE  169 (652)
T ss_pred             cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence            9999999888322    2234466666788889999999999999986554310                 0    0001


Q ss_pred             CChhhHHHHHH---HHHhcCChHHHHHHHHHHHHc-------CCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          155 PNTVTYSIIID---GLCKEGFVDKAKELFLQMKYE-------NLNPNV-------VTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       155 ~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      ....+|..+.+   .+...|++.+|+++++...+.       +..-+.       .+-.-+...+-..|+-.+|..++..
T Consensus       170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~  249 (652)
T KOG2376|consen  170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD  249 (652)
T ss_pred             CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            11234544443   455789999999999988321       111111       1122344556678999999999988


Q ss_pred             HHHCCCCCCcccHHH---------------------------------------------------HHHHHHh-------
Q 015811          218 MVDQGVQPNVVSSNV---------------------------------------------------IMNELCK-------  239 (400)
Q Consensus       218 ~~~~~~~~~~~~~~~---------------------------------------------------l~~~~~~-------  239 (400)
                      .++... +|......                                                   ++..|..       
T Consensus       250 ~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~  328 (652)
T KOG2376|consen  250 IIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE  328 (652)
T ss_pred             HHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            887642 22211100                                                   0000100       


Q ss_pred             -------------------------cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH--------
Q 015811          240 -------------------------NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFV--------  286 (400)
Q Consensus       240 -------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------  286 (400)
                                               ......+..++...-+....-...+.-..++.....|+++.|.+++.        
T Consensus       329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s  408 (652)
T KOG2376|consen  329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS  408 (652)
T ss_pred             HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence                                     00112222222222222111112334445566677888998888888        


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC------CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          287 SMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK------GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .+.+.+..|  .+...++..+.+.++-+.|..++......      +-.--..++..+...-.+.|+-++|..+++++.+
T Consensus       409 s~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  409 SILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK  486 (652)
T ss_pred             hhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence            555544333  44556677777777766666666655431      1111122333344444667999999999999998


Q ss_pred             CCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCCC
Q 015811          361 NDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNT  397 (400)
Q Consensus       361 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  397 (400)
                      .+ ++|..+...++-+|++. +.+.|..+-+.+.+..
T Consensus       487 ~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~  521 (652)
T KOG2376|consen  487 FN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK  521 (652)
T ss_pred             hC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence            64 56888899999999876 5677777777665543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=3.3e-09  Score=79.73  Aligned_cols=199  Identities=12%  Similarity=0.006  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      +...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+..       +-+..+.|.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNN  108 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNN  108 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhh
Confidence            44556677888888888888888888775 4456778888888888888888888888888765       556778888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811          163 IIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (400)
                      ....+|..|.+++|...|+.......-+ ...+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|
T Consensus       109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~  187 (250)
T COG3063         109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG  187 (250)
T ss_pred             hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence            8888888888888888888887653222 23577777777788888888888888888764 334456666777778888


Q ss_pred             CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      ++-.|...++.....+. ++...+-..|+.-...|+.+.+.+.=..+.+.
T Consensus       188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            88888888888777663 67777777777777778777776666555543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.36  E-value=1.6e-08  Score=87.21  Aligned_cols=203  Identities=8%  Similarity=-0.042  Sum_probs=121.4

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGL-FPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      |..+..|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+ .+...+.
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~   81 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALK   81 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHH
Confidence            45566777777777777888887776666554321 1121 2222333455677888888888888877632 2333333


Q ss_pred             H---HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           86 S---LIKGLCAESRIVEAAALFTKLKAFGCEPN-VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        86 ~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      .   +.......+....+.+.+...  ....|+ ......+...+...|++++|...+++..+..       +.+...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~  152 (355)
T cd05804          82 LHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVH  152 (355)
T ss_pred             HhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHH
Confidence            2   111112234444444444431  111222 2333445566777888888888888887764       44566677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENL-NPNV--VTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      .+..++...|++++|...+++...... .++.  ..|..+...+...|++++|..++++...
T Consensus       153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            777788888888888888887765421 1222  2344566777778888888888877754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=3e-09  Score=88.27  Aligned_cols=217  Identities=16%  Similarity=0.011  Sum_probs=107.3

Q ss_pred             ChhhHHHHHHHHHhccC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811           61 QVSLGFVIFGRILRSCF-AP--NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        61 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                      ..+.++.-+.+++.... .|  ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            44555555555554211 11  12345555556666666666666666666553 3345666666666666666666666


Q ss_pred             HHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          138 LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      .|++..+..       +.+..++..+..++...|++++|.+.|+...+..  |+..........+...+++++|...+..
T Consensus       120 ~~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~  190 (296)
T PRK11189        120 AFDSVLELD-------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ  190 (296)
T ss_pred             HHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            666666543       3344555556666666666666666666666542  2222111112222334556666666654


Q ss_pred             HHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC---C---CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          218 MVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD---V---RPNAFTYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      ..... .++...+   .......|+...+ ..+..+.+..   +   +.....|..+...+...|++++|...|++..+.
T Consensus       191 ~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        191 RYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            43321 2221111   1222334444333 2333332210   0   011234555555555566666666666655554


Q ss_pred             C
Q 015811          292 G  292 (400)
Q Consensus       292 ~  292 (400)
                      +
T Consensus       266 ~  266 (296)
T PRK11189        266 N  266 (296)
T ss_pred             C
Confidence            3

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=3e-10  Score=98.33  Aligned_cols=248  Identities=16%  Similarity=0.121  Sum_probs=180.1

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhc----
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-----GL-FPDLY-TYSILINCFCKMGQVSLGFVIFGRILRS----   75 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----   75 (400)
                      .|.-..+...+...|...|+++.|..+++...+.     |. .|... ..+.+...|...+++.+|..+|+.++..    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3344566677999999999999999999998664     21 23333 3344778899999999999999998863    


Q ss_pred             -cC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           76 -CF--APNVVTFTSLIKGLCAESRIVEAAALFTKLKAF-----GC-EPNV-ITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        76 -~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                       |.  +.-..+++.|..+|.+.|++++|..++++..+.     |. .|.+ ..++.+...+...+++++|..+++...+.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence             21  123456778888999999999999888876532     21 1222 23566777888999999999998876543


Q ss_pred             CCccccccc-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C--CC-ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          146 NGEIGVVFK-PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN----L--NP-NVVTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       146 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      -........ --..+++.+...|...|++++|.++++.++...    .  .+ ....++.+...|.+.+++.+|..+|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            211000011 224678999999999999999999999987541    1  12 235677888899999999989888877


Q ss_pred             HHHC----CC--CCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          218 MVDQ----GV--QPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       218 ~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ....    |.  +....+|..|...|...|+++.|.++.+.+.
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            5432    21  2234678889999999999999999988775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.34  E-value=2.5e-09  Score=88.72  Aligned_cols=219  Identities=12%  Similarity=0.014  Sum_probs=159.4

Q ss_pred             cCChhHHHHHHHHHHhCC-CCC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHH
Q 015811           24 NKHYDTVLSLFKRLNSIG-LFP--DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEA  100 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  100 (400)
                      .+..+.++.-+.++.... ..|  ....|..+...+...|+.+.|...|++.++..+ .+...|+.+...+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            456677888888887542 122  245688888899999999999999999999753 4788999999999999999999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHH
Q 015811          101 AALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF  180 (400)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  180 (400)
                      ...|++..+.. +-+..++..+..++...|++++|++.++......        |+..........+...+++++|...+
T Consensus       118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~~~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--------PNDPYRALWLYLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999874 3456788888889999999999999999998864        33322233333445678899999999


Q ss_pred             HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ---GV---QPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ....... .++...+ .+  .....|+...+ ..+..+.+.   .+   +.....|..+...+.+.|++++|...|+...
T Consensus       189 ~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al  263 (296)
T PRK11189        189 KQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL  263 (296)
T ss_pred             HHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7765432 3332222 22  22334555443 344444422   11   1123578889999999999999999999999


Q ss_pred             hCC
Q 015811          255 QCD  257 (400)
Q Consensus       255 ~~~  257 (400)
                      +.+
T Consensus       264 ~~~  266 (296)
T PRK11189        264 ANN  266 (296)
T ss_pred             HhC
Confidence            876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=5.6e-09  Score=81.55  Aligned_cols=295  Identities=14%  Similarity=0.119  Sum_probs=205.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH-HHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS-LIKGL   91 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~   91 (400)
                      -|++.+..+.+..+++.|++++....++. +.+......+..+|....++..|-+.|+++-..  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            47788888899999999999999888775 337788899999999999999999999999876  344444432 34666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVI--TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      .+.+.+..|+++...|...   +...  +...-.......+++..+..++++....+         +..+.+...-...+
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyk  156 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYK  156 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeec
Confidence            7889999999999888642   2221  11111222345778888888888876433         44555555556678


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------Ccc--------
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP-------------NVV--------  228 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------  228 (400)
                      .|+++.|.+-|+...+-+---....|+..+ ++.+.++++.|++...+++++|++.             |..        
T Consensus       157 egqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l  235 (459)
T KOG4340|consen  157 EGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL  235 (459)
T ss_pred             cccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence            899999999999988764333455665544 5567789999999999988876532             111        


Q ss_pred             -------cHHHHHHHHHhcCCchhHHHHHHHHHhC-CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 015811          229 -------SSNVIMNELCKNGKMDNASRLLDLMVQC-DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY  300 (400)
Q Consensus       229 -------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  300 (400)
                             .++.-...+.+.++++.|.+.+..|.-+ ....|+.|+..+.-.- -.+++....+-+.-+...+ +....||
T Consensus       236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETF  313 (459)
T KOG4340|consen  236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETF  313 (459)
T ss_pred             HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHH
Confidence                   1222233456778888888888777432 2345677776665432 2345555555566666655 4567788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          301 NILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       301 ~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      ..++-.||+..-++.|-.++.+-..
T Consensus       314 ANlLllyCKNeyf~lAADvLAEn~~  338 (459)
T KOG4340|consen  314 ANLLLLYCKNEYFDLAADVLAENAH  338 (459)
T ss_pred             HHHHHHHhhhHHHhHHHHHHhhCcc
Confidence            8888899999889998888866443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.30  E-value=8.3e-08  Score=82.76  Aligned_cols=306  Identities=10%  Similarity=-0.032  Sum_probs=186.3

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH--
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCF-APNV-VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT--  121 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  121 (400)
                      ...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            44566666677777888887777777665422 1121 222233445667899999999999988763 334444442  


Q ss_pred             -HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 015811          122 -LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIH  200 (400)
Q Consensus       122 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  200 (400)
                       ........+....+.+.+......       .+........+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~  156 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH  156 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence             111122245555555555542111       23334455566678889999999999999999864 335677788889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC-CCc--ccHHHHHHHHHhcCCchhHHHHHHHHHhCCC-CCcHHHH-H--HHHHHHH
Q 015811          201 GFCHANDWNEAKGLLIEMVDQGVQ-PNV--VSSNVIMNELCKNGKMDNASRLLDLMVQCDV-RPNAFTY-N--TLMDGFC  273 (400)
Q Consensus       201 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~  273 (400)
                      .+...|++++|...+++....... ++.  ..+..+...+...|++++|..+++....... .+..... +  .++.-+.
T Consensus       157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  236 (355)
T cd05804         157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE  236 (355)
T ss_pred             HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence            999999999999999998875321 222  2344677889999999999999999864432 1112111 1  2233333


Q ss_pred             cCCChHHHHHH--H-HHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCC------cCHHHHHHHH--HH
Q 015811          274 LTGKINRVKEL--F-VSMESM-GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIK------PTVVTYNTLF--HG  341 (400)
Q Consensus       274 ~~~~~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------p~~~~~~~l~--~~  341 (400)
                      ..|....+.+.  + ...... ..............++...|+.+.|..+++.+......      ....+-..++  .+
T Consensus       237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~  316 (355)
T cd05804         237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY  316 (355)
T ss_pred             hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence            44433333322  1 111111 00111222235667778899999999999888653211      0011112222  34


Q ss_pred             HhccchHHHHHHHHHHHhh
Q 015811          342 LFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       342 ~~~~~~~~~a~~~~~~~~~  360 (400)
                      +...|++++|.+.+.....
T Consensus       317 ~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         317 AFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            5678999999999988764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=6.7e-08  Score=77.57  Aligned_cols=88  Identities=13%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811           18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI   97 (400)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   97 (400)
                      +.-+..++++..|+.+++--...+-.....+-.-+..++...|++++|...|..+.+.. .++...+..|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            45566778888888888876654422222333344566778899999999988887754 55666777777776677777


Q ss_pred             HHHHHHHHH
Q 015811           98 VEAAALFTK  106 (400)
Q Consensus        98 ~~a~~~~~~  106 (400)
                      .+|..+-.+
T Consensus       108 ~eA~~~~~k  116 (557)
T KOG3785|consen  108 IEAKSIAEK  116 (557)
T ss_pred             HHHHHHHhh
Confidence            777766544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.1e-08  Score=81.94  Aligned_cols=126  Identities=14%  Similarity=0.091  Sum_probs=76.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-------------------
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF-------------------   77 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------   77 (400)
                      +...+.+.|++++|+..|..+.+.. .++...+..+.-++.-.|.+.+|..+-.+..+...                   
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~  141 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL  141 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence            5667788999999999999987755 67777788887777778888888877665433210                   


Q ss_pred             ------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHcC
Q 015811           78 ------APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL-INGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        78 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                            ..+..--.+|.....-.-.+++|++++.+....  .|+-...|.. .-+|.+..-++-+.++++-..+.
T Consensus       142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence                  000111112222222223456677777766654  3444444443 33455666666666666666554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.29  E-value=2.5e-07  Score=80.09  Aligned_cols=335  Identities=11%  Similarity=0.093  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL  126 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (400)
                      .|...++.+..+|++......|+..+.. .+.....+|...+......+-++-+..++++.++.    ++..-...+..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence            4555556666777777777777777653 22334557888888888888888999999998854    444467778888


Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCChhh--------------------------------------HHHHHHHHH
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT--------------------------------------YSIIIDGLC  168 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~l~~~~~  168 (400)
                      +..+++++|-+.+..........+...+.+...                                      |.+|...|.
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI  259 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI  259 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence            889999998888877766543222112333333                                      444555555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCCC---
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND----------------------WNEAKGLLIEMVDQGV---  223 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~---  223 (400)
                      +.|.+++|.++|++....  ..+..-|..+..+|+.-..                      ++-....|+.+...+.   
T Consensus       260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            555555555555554443  1233333344443332111                      0111111111111100   


Q ss_pred             --------CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC------cHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          224 --------QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP------NAFTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       224 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                              +-+...|..  +.-+..|+..+-...+.++.+. +.|      -...|..+...|-..|+++.|..+|++..
T Consensus       338 NsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                    000000000  0112234455555556555442 122      13457777888888899999999999887


Q ss_pred             hcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC----------CCc-------CHHHHHHHHHHHhccchHH
Q 015811          290 SMGCKHD---DFSYNILINGYCKNKEVEEALSLYNELPFKG----------IKP-------TVVTYNTLFHGLFEIRQAE  349 (400)
Q Consensus       290 ~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~p-------~~~~~~~l~~~~~~~~~~~  349 (400)
                      +...+--   ..+|......=.+..+++.|++++++.....          ..|       +...|..+++.--..|-++
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            7543221   2345555555567778888888888765321          111       2334555555555567788


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhC
Q 015811          350 RALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKG  392 (400)
Q Consensus       350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  392 (400)
                      ....+++++.+..+. ++.+......-+-...-++++++.+++
T Consensus       495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr  536 (835)
T KOG2047|consen  495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER  536 (835)
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            888888888876654 333333344445566777888777765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.24  E-value=1.4e-09  Score=88.94  Aligned_cols=249  Identities=13%  Similarity=0.036  Sum_probs=131.7

Q ss_pred             HHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 015811           56 FCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVA  135 (400)
Q Consensus        56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  135 (400)
                      +.-.|++..++.-.+ ........+.....-+.+++...|+.+.++   .++.... .|.......+...+...++-+.+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence            344566666665444 222222223334445556666666655433   2332222 45555554444444333444455


Q ss_pred             HHHHHHHHcCCCccccccc-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 015811          136 LNLFKEMTNGNGEIGVVFK-PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGL  214 (400)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  214 (400)
                      +.-++......      .. .+.........++...|++++|++++...      .+.......+..+.+.++++.|.+.
T Consensus        86 l~~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~  153 (290)
T PF04733_consen   86 LEELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE  153 (290)
T ss_dssp             HHHHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence            54444433322      11 12222222233455567777777666532      2455566667777777777777777


Q ss_pred             HHHHHHCCCCCCcccHHHHHHHHHh----cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811          215 LIEMVDQGVQPNVVSSNVIMNELCK----NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMES  290 (400)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  290 (400)
                      ++.|.+.+   +..+...+..++..    .+.+.+|..+|+++.+. ..+++.+++.+..++...|++++|..++.+...
T Consensus       154 l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  154 LKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             HHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             HHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            77776542   33444444444432    23577777777776554 356667777777777777777777777777766


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHhhhhhC
Q 015811          291 MGCKHDDFSYNILINGYCKNKEV-EEALSLYNELPFK  326 (400)
Q Consensus       291 ~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~  326 (400)
                      .+ +.++.++..++.+....|+. +.+.+.+.++...
T Consensus       230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            54 34556666666666666665 5566677766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.23  E-value=1.6e-07  Score=75.16  Aligned_cols=302  Identities=10%  Similarity=0.038  Sum_probs=224.5

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH-HHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT-FTSL   87 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l   87 (400)
                      .++.-.-.+...+..+|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.-+..+++.  +||-.. -..-
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            444555567778888999999999999988653 333445566667889999999999999999886  555432 2223


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccc
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVIT----------------YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGV  151 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  151 (400)
                      ...+.++|.+++|..=|+..++..  |+..+                ....+..+...|+...|+..+..+.+..     
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-----  185 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-----  185 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-----
Confidence            456789999999999999998873  32211                2233445667899999999999999874     


Q ss_pred             cccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc--
Q 015811          152 VFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVS--  229 (400)
Q Consensus       152 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--  229 (400)
                        +.+...+..-..+|...|++..|+.=++...+.. ..++.++--+-..+...|+.+.++..+++.++.  .||...  
T Consensus       186 --~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf  260 (504)
T KOG0624|consen  186 --PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF  260 (504)
T ss_pred             --cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH
Confidence              6788889999999999999999998887776653 335667777778888999999999999988875  455432  


Q ss_pred             --HHHH---------HHHHHhcCCchhHHHHHHHHHhCCCCCcHH---HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC
Q 015811          230 --SNVI---------MNELCKNGKMDNASRLLDLMVQCDVRPNAF---TYNTLMDGFCLTGKINRVKELFVSMESMGCKH  295 (400)
Q Consensus       230 --~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  295 (400)
                        |..+         +......++|-++.+..+...+........   .+..+-.++...+++.+|++.-.++.+.. +.
T Consensus       261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~  339 (504)
T KOG0624|consen  261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PD  339 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-ch
Confidence              2111         123345677888888887777764332222   34455667778899999999999998875 44


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          296 DDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       296 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      |+.++..-..+|.-...++.|+.-|+...+.
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            5888888899999999999999999998875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.22  E-value=3.3e-07  Score=81.00  Aligned_cols=371  Identities=12%  Similarity=0.054  Sum_probs=252.3

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSL   87 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l   87 (400)
                      .+...|..+.-++...|+++.+.+.|++.... ..-....|..+...+...|.-..|..+++........| +...+-..
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            46778888888999999999999999997653 24467788999889999999999999998877654334 33333333


Q ss_pred             HHHHH-hcCCHHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHcCCCcccc
Q 015811           88 IKGLC-AESRIVEAAALFTKLKAF--GC--EPNVITYNTLINGLCRT-----------GHTIVALNLFKEMTNGNGEIGV  151 (400)
Q Consensus        88 ~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~  151 (400)
                      -+.|. +.+..++++++-.+....  +.  ......+..+.-+|...           ....++++.+++..+.+     
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-----  474 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-----  474 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-----
Confidence            34444 346677777777666652  11  12334444444444321           12356788888887766     


Q ss_pred             cccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------
Q 015811          152 VFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-GVQ------  224 (400)
Q Consensus       152 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------  224 (400)
                        +.|+.....+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+. |..      
T Consensus       475 --~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~  552 (799)
T KOG4162|consen  475 --PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG  552 (799)
T ss_pred             --CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence              33444444455557778899999999999998866668889999999999999999999998876643 110      


Q ss_pred             ------------CCcccHHHHHHHHH-----------------------hcCCchhHHHHHHHHH--------hCC----
Q 015811          225 ------------PNVVSSNVIMNELC-----------------------KNGKMDNASRLLDLMV--------QCD----  257 (400)
Q Consensus       225 ------------~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~----  257 (400)
                                  ....|...++..+-                       ..++..++.+....+.        ..+    
T Consensus       553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~  632 (799)
T KOG4162|consen  553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK  632 (799)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence                        00111222222111                       0112222222221110        001    


Q ss_pred             -----C--CCc------HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          258 -----V--RPN------AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       258 -----~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                           +  .|+      ...|......+.+.+..++|...+.+..... +-....|......+...|.+.+|.+.|....
T Consensus       633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence                 1  122      2245566677888999999999998887764 5567778888888999999999999999887


Q ss_pred             hCCCCc-CHHHHHHHHHHHhccchHHHHHH--HHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          325 FKGIKP-TVVTYNTLFHGLFEIRQAERALK--LFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       325 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      ..  .| ++....++...+.+.|+..-|..  ++.++.+.+ +.+...|..+-..+.+.|+.+.|...+.
T Consensus       712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  712 AL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             hc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            65  34 45577888889999998888877  999998865 3377789999999999999998865443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.22  E-value=1.2e-06  Score=75.97  Aligned_cols=221  Identities=11%  Similarity=0.044  Sum_probs=134.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCC------ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhc
Q 015811          170 EGFVDKAKELFLQMKYENLNP------NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN---VVSSNVIMNELCKN  240 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  240 (400)
                      .|+..+....|.++.+. +.|      -...|..+...|-..|+.+.|..+|++..+-..+--   ..+|......-.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            45666677777776654 222      124577788888889999999999988876532211   22333344444567


Q ss_pred             CCchhHHHHHHHHHhCCC-----------CC------cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 015811          241 GKMDNASRLLDLMVQCDV-----------RP------NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNIL  303 (400)
Q Consensus       241 ~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  303 (400)
                      .+++.|.++++......-           ++      +...|...+..--..|-++....+++++.+..+. ++......
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny  517 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY  517 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            778888888877643211           11      2234444555555667888888888888876643 33333333


Q ss_pred             HHHHHhcCCHHHHHHHHhhhhhCCCCcCH-HHHHHHHHHHhc---cchHHHHHHHHHHHhhCCCCCChhhHHHHHH--Hh
Q 015811          304 INGYCKNKEVEEALSLYNELPFKGIKPTV-VTYNTLFHGLFE---IRQAERALKLFVEMQGNDVAADTCTYRTFID--GL  377 (400)
Q Consensus       304 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~  377 (400)
                      ...+-.+.-++++.+++++-+..--.|++ ..|+..+.-+.+   ..+.+.|..+|++.++ |.+|...-+--|+-  .=
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE  596 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE  596 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            44445666788999999887665334554 367776665543   3468899999999988 55554432222221  11


Q ss_pred             hcCCcchhhHhhhhCC
Q 015811          378 CVRPQVRFTYARRKGN  393 (400)
Q Consensus       378 ~~~g~~~~a~~~~~~~  393 (400)
                      -..|-...|...+++.
T Consensus       597 Ee~GLar~amsiyera  612 (835)
T KOG2047|consen  597 EEHGLARHAMSIYERA  612 (835)
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            2456666776666553

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.20  E-value=1.2e-06  Score=74.39  Aligned_cols=376  Identities=11%  Similarity=0.116  Sum_probs=222.8

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      ..|.|+.+|+.||+-+..+ .++++++.++++...- +-....|..-+..-...++++....+|.+.+..  ..+...|.
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~   90 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK   90 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence            3578999999999988776 9999999999998642 446789999999999999999999999999886  34566666


Q ss_pred             HHHHHHHh-cCCHHH----HHHHHHHH-HHcCCCCC-hhhHHHHHHH---------HHhcCChHHHHHHHHHHHcCCCcc
Q 015811           86 SLIKGLCA-ESRIVE----AAALFTKL-KAFGCEPN-VITYNTLING---------LCRTGHTIVALNLFKEMTNGNGEI  149 (400)
Q Consensus        86 ~l~~~~~~-~~~~~~----a~~~~~~~-~~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~  149 (400)
                      ..+.--.+ .++...    ..+.|+-. .+.|..+- -..|+..+.-         +....+.+...++++++....   
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP---  167 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP---  167 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc---
Confidence            65543332 222222    22233322 23343332 2334444432         233445666777777776532   


Q ss_pred             cccccCChhhHH------HHHHHH-------HhcCChHHHHHHHHHHHHc--CCCCChH---------------hHHHHH
Q 015811          150 GVVFKPNTVTYS------IIIDGL-------CKEGFVDKAKELFLQMKYE--NLNPNVV---------------TYTSLI  199 (400)
Q Consensus       150 ~~~~~~~~~~~~------~l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~~~~~---------------~~~~l~  199 (400)
                         +.-=...|+      .-++..       -+...+..|.++++++...  |+.....               .|..+|
T Consensus       168 ---m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I  244 (656)
T KOG1914|consen  168 ---MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI  244 (656)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence               111111221      111111       1234455666666655321  2111110               121121


Q ss_pred             HH-------------------------------------------------HHhcCC-------HHHHHHHHHHHHHCCC
Q 015811          200 HG-------------------------------------------------FCHAND-------WNEAKGLLIEMVDQGV  223 (400)
Q Consensus       200 ~~-------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~  223 (400)
                      ..                                                 +...|+       -+++..+++.....-.
T Consensus       245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~  324 (656)
T KOG1914|consen  245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL  324 (656)
T ss_pred             HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            11                                                 001111       1222333332222111


Q ss_pred             CCCcccHHHHHHHHHh---cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC-CHHH
Q 015811          224 QPNVVSSNVIMNELCK---NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH-DDFS  299 (400)
Q Consensus       224 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~  299 (400)
                      ..+..+|..+...--.   -...+.....++++......--..+|..++..-.+..-+..|..+|.++.+.+..+ ++..
T Consensus       325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV  404 (656)
T KOG1914|consen  325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV  404 (656)
T ss_pred             HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence            1111111111111000   11244455556555544322234567777887788888999999999998876666 6777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHh
Q 015811          300 YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADT--CTYRTFIDGL  377 (400)
Q Consensus       300 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~  377 (400)
                      +++++..|+. ++.+-|.++|+--.++ ..-++..-...+..+...++-..+..+|++....++.||.  .+|..+++-=
T Consensus       405 a~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE  482 (656)
T KOG1914|consen  405 AAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE  482 (656)
T ss_pred             HHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence            8888887765 7789999999986654 1223444466777888889999999999999987666544  6899999988


Q ss_pred             hcCCcchhhHhhhhCC
Q 015811          378 CVRPQVRFTYARRKGN  393 (400)
Q Consensus       378 ~~~g~~~~a~~~~~~~  393 (400)
                      ..-|+...+..+.++.
T Consensus       483 S~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  483 SNVGDLNSILKLEKRR  498 (656)
T ss_pred             HhcccHHHHHHHHHHH
Confidence            8999999887776654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.20  E-value=4e-07  Score=78.90  Aligned_cols=243  Identities=14%  Similarity=0.115  Sum_probs=163.7

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ...|..++..| ..+++...++..+.+++. .+....+.....-.+...|+.++|........+..+. +...|..+.-.
T Consensus         8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~   84 (700)
T KOG1156|consen    8 NALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence            34455555544 567888888888888773 3445566666666667788889998888888776544 77788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                      +....++++|++.|......+ +.+...+.-+.-.-+..++++.....-....+..       +.....|..+..++.-.
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLL  156 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHH
Confidence            888888999999999888775 5566777777666667777777777666666543       44556677777788888


Q ss_pred             CChHHHHHHHHHHHHcC-CCCChHhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCc
Q 015811          171 GFVDKAKELFLQMKYEN-LNPNVVTYTSLI------HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKM  243 (400)
Q Consensus       171 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  243 (400)
                      |++..|..+++...+.. -.|+...+....      ......|.++.|.+.+..-... +......-..-...+.+.+++
T Consensus       157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l  235 (700)
T KOG1156|consen  157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL  235 (700)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence            88888888888877653 245555444322      2334567777777766655433 111222233345566778888


Q ss_pred             hhHHHHHHHHHhCCCCCcHHHHHH
Q 015811          244 DNASRLLDLMVQCDVRPNAFTYNT  267 (400)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~  267 (400)
                      ++|..++..+....  ||...|..
T Consensus       236 EeA~~~y~~Ll~rn--Pdn~~Yy~  257 (700)
T KOG1156|consen  236 EEAVKVYRRLLERN--PDNLDYYE  257 (700)
T ss_pred             HhHHHHHHHHHhhC--chhHHHHH
Confidence            88888888887753  55444433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.3e-07  Score=76.50  Aligned_cols=212  Identities=12%  Similarity=0.072  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-------
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV-------  232 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------  232 (400)
                      ...+.+...+..++..+++.+....+..  -+..-++....+|...|.+..+...-....+.|.. ...-|+.       
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            3456777778888999999999888764  35566677778888888888877777766665422 2222222       


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHH-------------------------HHHHHHHHcCCChHHHHHHHHH
Q 015811          233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTY-------------------------NTLMDGFCLTGKINRVKELFVS  287 (400)
Q Consensus       233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~  287 (400)
                      +..+|.+.++++.+...|.+.......|+...-                         ..-...+.+.|++..|...|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            334566677888888888776654433332111                         1113456678999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC
Q 015811          288 MESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD  366 (400)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  366 (400)
                      ++... |.|...|....-+|.+.|.+..|+.-.+..++.  .|+ ...|..=..++....++++|++.|.+.++.+  |+
T Consensus       384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~  458 (539)
T KOG0548|consen  384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PS  458 (539)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ch
Confidence            99887 678899999999999999999999988887766  333 3344444556666788999999999988753  55


Q ss_pred             hhhHHHHHHHhhc
Q 015811          367 TCTYRTFIDGLCV  379 (400)
Q Consensus       367 ~~~~~~l~~~~~~  379 (400)
                      ..-+..-+.-|..
T Consensus       459 ~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  459 NAEAIDGYRRCVE  471 (539)
T ss_pred             hHHHHHHHHHHHH
Confidence            5544444444444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.14  E-value=4.6e-09  Score=85.87  Aligned_cols=250  Identities=16%  Similarity=0.082  Sum_probs=163.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      +-+.-.|++..++.-.+ .....-+.+......+.+++...|+.+.++   .++....       +|.......+...+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-------~~~l~av~~la~y~~   77 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-------SPELQAVRLLAEYLS   77 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-------SCCCHHHHHHHHHHC
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-------ChhHHHHHHHHHHHh
Confidence            44556788888886665 222211122344556678888899877544   4443332       566666666666555


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTY-TSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      ...+-+.+..-++........++..++ ......+...|++++|++++...      .+.......+.+|.+.++++.|.
T Consensus        78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~  151 (290)
T PF04733_consen   78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAE  151 (290)
T ss_dssp             TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHH
Confidence            444555555555444333322222233 33345566789999999988642      35667778889999999999999


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHH----cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFC----LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL  323 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  323 (400)
                      +.++.|.+.+  .| .+...+..++.    -...+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.+.
T Consensus       152 k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a  227 (290)
T PF04733_consen  152 KELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA  227 (290)
T ss_dssp             HHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999998753  34 34444544443    234689999999998765 4678999999999999999999999999998


Q ss_pred             hhCCCCcCHHHHHHHHHHHhccchH-HHHHHHHHHHhh
Q 015811          324 PFKGIKPTVVTYNTLFHGLFEIRQA-ERALKLFVEMQG  360 (400)
Q Consensus       324 ~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~  360 (400)
                      ...+.. ++.++..++.+....|+. +.+.+++.++..
T Consensus       228 l~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  228 LEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             CCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            876433 666777777777777877 667788888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.11  E-value=1.1e-06  Score=85.70  Aligned_cols=331  Identities=9%  Similarity=-0.027  Sum_probs=202.3

Q ss_pred             HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CCh--hhHHHHHHHH
Q 015811           55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE------PNV--ITYNTLINGL  126 (400)
Q Consensus        55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~  126 (400)
                      .....|+++.+..+++.+.......+..........+...|+++++...+....+.--.      +..  .....+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            34556777776666665422111112223344455566789999999998877543101      111  1122233455


Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hHhHHH
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPN----TVTYSIIIDGLCKEGFVDKAKELFLQMKYENL---NPN--VVTYTS  197 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~  197 (400)
                      ...|++++|...+++......      ..+    ....+.+...+...|++++|...+.+......   .+.  ..++..
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        463 INDGDPEEAERLAELALAELP------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCC------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            678999999999998765321      111    12345566677889999999999988764311   111  234455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCCC---CcccHHHHHHHHHhcCCchhHHHHHHHHHhCC--CCC--cHHHHH
Q 015811          198 LIHGFCHANDWNEAKGLLIEMVDQ----GVQP---NVVSSNVIMNELCKNGKMDNASRLLDLMVQCD--VRP--NAFTYN  266 (400)
Q Consensus       198 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~  266 (400)
                      +...+...|++++|...+++....    +...   ....+..+...+...|++++|...+.......  ..+  ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            667788899999999998886653    2111   11233445566777899999999988765431  111  233445


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhcC--CCCCHHH----HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCH---HHHHH
Q 015811          267 TLMDGFCLTGKINRVKELFVSMESMG--CKHDDFS----YNILINGYCKNKEVEEALSLYNELPFKGIKPTV---VTYNT  337 (400)
Q Consensus       267 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~  337 (400)
                      .+...+...|+++.|...+.......  .......    ....+..+...|+.+.|..++............   ..+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            56667788999999999988875421  1111111    011224455688999999998776543211111   11344


Q ss_pred             HHHHHhccchHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          338 LFHGLFEIRQAERALKLFVEMQGN----DVAAD-TCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       338 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      +..++...|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~  755 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL  755 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            566778889999999999887642    32222 2355666778889999988866544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=6.8e-08  Score=75.68  Aligned_cols=294  Identities=11%  Similarity=0.062  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT-LINGL  126 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~  126 (400)
                      -+...+..+.+..+++.|++++..-.++..+ +......|..+|....++..|-+.++++-..  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            4566777778888999999999988887532 7778888999999999999999999999876  566555543 35677


Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN  206 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  206 (400)
                      .+.+.+..|+++...|....       ..-..+...-.......+++..+..++++....|   +..+.+...-...+.|
T Consensus        89 Y~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG  158 (459)
T ss_pred             HHhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence            78899999999999887632       1111222222223345788888888888766432   3334444444456889


Q ss_pred             CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-------------CcHH--------HH
Q 015811          207 DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-------------PNAF--------TY  265 (400)
Q Consensus       207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~  265 (400)
                      +++.|.+-|+...+-+--.....|+..+ +..+.++++.|.+...+++++|++             ||..        .-
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~  237 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ  237 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence            9999999999988764333445566544 566789999999999999887653             1211        11


Q ss_pred             HHHHH-------HHHcCCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHH
Q 015811          266 NTLMD-------GFCLTGKINRVKELFVSMES-MGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNT  337 (400)
Q Consensus       266 ~~l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  337 (400)
                      +.++.       .+.+.++++.|.+.+-.|.- .....|+.|...+.-.- ..+++.+..+-+.-+..... -...||..
T Consensus       238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFAN  315 (459)
T KOG4340|consen  238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFAN  315 (459)
T ss_pred             HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence            22333       34567888888877777632 12234566655443222 23344444444444444432 35678888


Q ss_pred             HHHHHhccchHHHHHHHHHH
Q 015811          338 LFHGLFEIRQAERALKLFVE  357 (400)
Q Consensus       338 l~~~~~~~~~~~~a~~~~~~  357 (400)
                      ++-.|++..-++-|-.++.+
T Consensus       316 lLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  316 LLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHhhhHHHhHHHHHHhh
Confidence            88888888888888777765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.09  E-value=2.1e-06  Score=76.12  Aligned_cols=340  Identities=13%  Similarity=0.028  Sum_probs=219.7

Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhH
Q 015811           41 GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN-VITY  119 (400)
Q Consensus        41 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~  119 (400)
                      .+.-+...|..+.-++...|+++.+.+.|++.....+. ....|..+...+...|.-..|..+++......-.|+ ...+
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            34567889999999999999999999999998875433 677899999999999999999999988765432233 3333


Q ss_pred             HHHHHHHH-hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh-----------cCChHHHHHHHHHHHHcC
Q 015811          120 NTLINGLC-RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK-----------EGFVDKAKELFLQMKYEN  187 (400)
Q Consensus       120 ~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~  187 (400)
                      -..-..|. +.+..++++.+-.++....+.....++|  ..|..+.-+|..           .....++++.+++..+.+
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            33333333 4677788887777776632211111233  333333333332           122456777788877654


Q ss_pred             C-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-------
Q 015811          188 L-NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-------  259 (400)
Q Consensus       188 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------  259 (400)
                      . .|+...|  +.--|+..++.+.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....-..       
T Consensus       475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~  552 (799)
T KOG4162|consen  475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG  552 (799)
T ss_pred             CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence            2 3333333  33345677899999999999999866778899999999999999999999998776543100       


Q ss_pred             ------------CcHHHHHHHHHHHHc---------C--------------CChHHHHHHHHHH--------HhcC----
Q 015811          260 ------------PNAFTYNTLMDGFCL---------T--------------GKINRVKELFVSM--------ESMG----  292 (400)
Q Consensus       260 ------------~~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~--------~~~~----  292 (400)
                                  ....|...++..+-.         .              ++..++....+.+        ...+    
T Consensus       553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~  632 (799)
T KOG4162|consen  553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK  632 (799)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence                        001122222222210         0              1111111111111        0111    


Q ss_pred             -----C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          293 -----C--KHD------DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       293 -----~--~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                           .  .|+      ...|......+.+.+..++|...+.+..... +.....|......+...|.+.+|.+.|....
T Consensus       633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence                 0  111      1245567788899999999998888887652 3345566666677888999999999999888


Q ss_pred             hCCCCC-ChhhHHHHHHHhhcCCcchhhHh
Q 015811          360 GNDVAA-DTCTYRTFIDGLCVRPQVRFTYA  388 (400)
Q Consensus       360 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~  388 (400)
                      ..  .| +.....++...+...|+..-|..
T Consensus       712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  712 AL--DPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             hc--CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            64  44 44577889999999997776554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.08  E-value=1.2e-06  Score=70.31  Aligned_cols=305  Identities=12%  Similarity=0.034  Sum_probs=190.7

Q ss_pred             CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HH
Q 015811           44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN-TL  122 (400)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l  122 (400)
                      .++.-..-+...+...|++..|+.-|-..++.++. +-.++-.-...|...|+...|+.=+.+.++.  +||-..-. .-
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            34555666777888888999998888888765211 2223333445677888888888888888876  56654322 23


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS------------IIIDGLCKEGFVDKAKELFLQMKYENLNP  190 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  190 (400)
                      ...+.+.|.+++|..-|+...+..+..    ......+.            ..+..+...|+...|+.....+++.. +-
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~----~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~W  187 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSN----GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PW  187 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCc----chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence            456778899999999999888765210    01111221            22334455677777777777777653 34


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH----HH
Q 015811          191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT----YN  266 (400)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~  266 (400)
                      |...+..-..+|...|.+..|+.=++...+.. ..+...+..+-..+...|+.+.++...++..+.  .||...    |.
T Consensus       188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK  264 (504)
T KOG0624|consen  188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK  264 (504)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence            66667777777777788877777666665543 334555666667777777777777777777664  344322    11


Q ss_pred             HH---------HHHHHcCCChHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC-HH
Q 015811          267 TL---------MDGFCLTGKINRVKELFVSMESMGCKHDDFS---YNILINGYCKNKEVEEALSLYNELPFKGIKPT-VV  333 (400)
Q Consensus       267 ~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~  333 (400)
                      .+         +......+++.++..-.+...+.........   +..+-.++...+++.+|++...+.++.  .|+ +.
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~  342 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQ  342 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHH
Confidence            11         1122345666666666666666542222222   334445566677777777777777654  333 55


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                      ++.--..+|.-...+++|+.-|+...+.
T Consensus       343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  343 VLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            6666666777777777777777777663

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.07  E-value=1e-06  Score=85.95  Aligned_cols=340  Identities=12%  Similarity=-0.007  Sum_probs=208.6

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC------Ccc--HHHHHHHHHHHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF------APN--VVTFTSLIKGLC   92 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~   92 (400)
                      +...|++..+..+++.+.......+..........+...|+++++..++......-.      .+.  ......+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            344556666555555542111111222233445556678999999999887754311      111  122233345566


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      ..|++++|...+++..+.-...+.    ...+.+...+...|++++|...+.+........+. ......+...+...+.
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~  542 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILF  542 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHH
Confidence            889999999999988763111121    23455666677899999999999887653311100 1111234556677788


Q ss_pred             hcCChHHHHHHHHHHHHc----CCC--C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CcccHHHHHHHH
Q 015811          169 KEGFVDKAKELFLQMKYE----NLN--P-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG--VQP--NVVSSNVIMNEL  237 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~  237 (400)
                      ..|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            899999999998887643    211  1 12334455566777899999999998876531  111  123344456677


Q ss_pred             HhcCCchhHHHHHHHHHhCC--CCCcHH--H-H-HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHH
Q 015811          238 CKNGKMDNASRLLDLMVQCD--VRPNAF--T-Y-NTLMDGFCLTGKINRVKELFVSMESMGCKHDD---FSYNILINGYC  308 (400)
Q Consensus       238 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~  308 (400)
                      ...|+++.|...+.......  ......  . . ...+..+...|+.+.|...+............   ..+..+..++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            88999999999988775421  111110  1 0 11224445678999999988776542211111   11346677888


Q ss_pred             hcCCHHHHHHHHhhhhhC----CCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          309 KNKEVEEALSLYNELPFK----GIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       309 ~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                      ..|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus       703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999987653    32222 234555667888999999999999998754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1e-07  Score=81.39  Aligned_cols=224  Identities=15%  Similarity=0.012  Sum_probs=133.8

Q ss_pred             HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHH
Q 015811           19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIV   98 (400)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   98 (400)
                      ..+.++|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++.++..+. +....-.|...|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            34566777777777777777665 446677777777777777777777777777776432 6667777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811           99 EAAALFTKLKAFGCEPNVITYNT-------LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG  171 (400)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (400)
                      .|.+.++..+....+ -...-..       .-..+.....+....++|-++....+     ..+|+.+...|.-.|.-.|
T Consensus       371 ~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             HHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcch
Confidence            777777776554210 0000000       00111112223334444444443331     2356666666666666667


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCCchhHHHHH
Q 015811          172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN-VVSSNVIMNELCKNGKMDNASRLL  250 (400)
Q Consensus       172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~  250 (400)
                      ++++|.+.|+.++... +-|..+||.|...++...+..+|+..|.+.++.  .|+ ..+...|.-+|...|.+++|.+.|
T Consensus       445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            7777777777666543 225566777777777666777777777766664  333 234444555666677777666665


Q ss_pred             HHH
Q 015811          251 DLM  253 (400)
Q Consensus       251 ~~~  253 (400)
                      -..
T Consensus       522 L~A  524 (579)
T KOG1125|consen  522 LEA  524 (579)
T ss_pred             HHH
Confidence            444

>PLN02789 farnesyltranstransferase

Probab=99.03  E-value=2.5e-06  Score=71.01  Aligned_cols=205  Identities=12%  Similarity=0.026  Sum_probs=108.6

Q ss_pred             hcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh--HH
Q 015811           58 KMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT--IV  134 (400)
Q Consensus        58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~  134 (400)
                      ..++.++|+.++.++++..+. +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|..  ++
T Consensus        49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence            344556666666666655322 3344444444444445 4566666666666553 33444555444444444432  45


Q ss_pred             HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CC----
Q 015811          135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA---ND----  207 (400)
Q Consensus       135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----  207 (400)
                      ++.+++++.+..       +-+..+|+...-++...|+++++++.++++++.+.. +...|+.....+.+.   |.    
T Consensus       127 el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        127 ELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             HHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence            566666666554       455666666666666667777777777777665432 444555444333332   11    


Q ss_pred             HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Q 015811          208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL  274 (400)
Q Consensus       208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  274 (400)
                      .++......+++... +-+...|+.+...+...    +...+|.+.+....+.+ +.+...+..|+..|+.
T Consensus       199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            234555555555543 33555666665555542    23344666665555543 3345556666666553

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.6e-06  Score=77.82  Aligned_cols=200  Identities=12%  Similarity=0.149  Sum_probs=118.2

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 015811          157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNE  236 (400)
Q Consensus       157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  236 (400)
                      +..|+.+..+-.+.|...+|++-|-+.      .|+..|..++....+.|.|++-.+++....+..-.|.  .-..++-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence            456777777777777777777665442      2556677777777777888777777776666544433  33456677


Q ss_pred             HHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015811          237 LCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEA  316 (400)
Q Consensus       237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  316 (400)
                      |++.++..+.++++.       -|+......+..-|...+.++.|.-+|..+         ..|..|...+...|+++.|
T Consensus      1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence            777777666554432       456666666666677777776666665433         2355566666666666666


Q ss_pred             HHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          317 LSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       317 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      ...-++.-      +..+|..+-.+|...+.+.-|     +|...++.....-+..++.-|-..|-+++-..+.+
T Consensus      1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred             HHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence            65554432      445666666666555444322     23333333334444555555555555555444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.6e-07  Score=76.33  Aligned_cols=233  Identities=13%  Similarity=0.076  Sum_probs=136.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF  172 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (400)
                      +..++..|++.+....+..  -+..-++....+|...|.+.++........+.+.+....+..=...+..+..++.+.++
T Consensus       236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~  313 (539)
T KOG0548|consen  236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED  313 (539)
T ss_pred             HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence            3334444444444444432  23333444555566666666655555555544422111011111122223335556677


Q ss_pred             hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHH
Q 015811          173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV-VSSNVIMNELCKNGKMDNASRLLD  251 (400)
Q Consensus       173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~  251 (400)
                      ++.++..|.+.......|+.         ..+....+++....+...-.+  |.. .-...-...+.+.|++..|...|.
T Consensus       314 ~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  314 YEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             HHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            77788877776654333221         122233344444433333222  221 112223566788999999999999


Q ss_pred             HHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC
Q 015811          252 LMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT  331 (400)
Q Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~  331 (400)
                      ++++.. +-|...|..-.-+|.+.|.+..|..-.+...+.+ ++....|.-=..++....++++|...|++.++.  .|+
T Consensus       383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~  458 (539)
T KOG0548|consen  383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPS  458 (539)
T ss_pred             HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence            998887 6788899999999999999999998888888775 455666666666777778899999999988876  355


Q ss_pred             HHHHHHHHHHH
Q 015811          332 VVTYNTLFHGL  342 (400)
Q Consensus       332 ~~~~~~l~~~~  342 (400)
                      ..-+..-+.-|
T Consensus       459 ~~e~~~~~~rc  469 (539)
T KOG0548|consen  459 NAEAIDGYRRC  469 (539)
T ss_pred             hHHHHHHHHHH
Confidence            44443333333

>PLN02789 farnesyltranstransferase

Probab=99.02  E-value=8.8e-07  Score=73.63  Aligned_cols=215  Identities=10%  Similarity=0.064  Sum_probs=159.5

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      +++.+-..+...++.++|+.+++++.+.. +-+..+|+....++...| ++++++..++++.+.+.+ +..+|+....++
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence            45566667778889999999999999875 446677887777777787 679999999999987644 666787766666


Q ss_pred             HhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           92 CAESRI--VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        92 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      .+.|+.  +++..+++++.+.. +-+..+|+...-++...|+++++++.++++.+.+       +.+...|+....++.+
T Consensus       117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVITR  188 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHHh
Confidence            666653  67888998998875 5678899998889999999999999999999876       5567777776666555


Q ss_pred             c---CCh----HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811          170 E---GFV----DKAKELFLQMKYENLNPNVVTYTSLIHGFCHA----NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC  238 (400)
Q Consensus       170 ~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  238 (400)
                      .   |..    ++.++...+++... +-+...|+.+...+...    +...+|.+.+.+....+ +.+...+..++..|+
T Consensus       189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~  266 (320)
T PLN02789        189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC  266 (320)
T ss_pred             ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence            4   222    46677776777653 34667787777777663    34466878877766643 335566777777776


Q ss_pred             h
Q 015811          239 K  239 (400)
Q Consensus       239 ~  239 (400)
                      .
T Consensus       267 ~  267 (320)
T PLN02789        267 E  267 (320)
T ss_pred             h
Confidence            5

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=1.5e-07  Score=80.44  Aligned_cols=251  Identities=15%  Similarity=0.125  Sum_probs=158.3

Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      -+.+.|++.+|.-.|+......       |-+...|..|.......++-..|+..+++..+.. +-+......|.-.|..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN  365 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN  365 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence            3456677777777777777665       5566777777777777777777777777777653 2245666666667777


Q ss_pred             cCCHHHHHHHHHHHHHCCCC--------CCcccHHHHHHHHHhcCCchhHHHHH-HHHHhCCCCCcHHHHHHHHHHHHcC
Q 015811          205 ANDWNEAKGLLIEMVDQGVQ--------PNVVSSNVIMNELCKNGKMDNASRLL-DLMVQCDVRPNAFTYNTLMDGFCLT  275 (400)
Q Consensus       205 ~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  275 (400)
                      .|.-..|...++.-+....+        ++...-..  ..+..........++| +...+.+..+|+.+...|...|.-.
T Consensus       366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls  443 (579)
T KOG1125|consen  366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS  443 (579)
T ss_pred             hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence            77777777777766543210        00000000  0111111222333333 3344444446777777888788888


Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH-HHHHHHHHHhccchHHHHHHH
Q 015811          276 GKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV-TYNTLFHGLFEIRQAERALKL  354 (400)
Q Consensus       276 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~  354 (400)
                      |++++|.+.|+.++... |.|..+||.|...++...+.++|+..|.+.++.  .|+.+ ....|.-+|...|.+++|.+.
T Consensus       444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            88888888888887765 556778888888888888888888888888775  55532 444566678888888888887


Q ss_pred             HHHHhh---C------CCCCChhhHHHHHHHhhcCCcchhhHh
Q 015811          355 FVEMQG---N------DVAADTCTYRTFIDGLCVRPQVRFTYA  388 (400)
Q Consensus       355 ~~~~~~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~  388 (400)
                      |-..+.   .      +..++..+|.+|=.++...++.+-+..
T Consensus       521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            766541   1      112234567777667777777664443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.95  E-value=8.9e-07  Score=83.33  Aligned_cols=245  Identities=11%  Similarity=0.083  Sum_probs=158.8

Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-cCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811           34 FKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-CFA---PNVVTFTSLIKGLCAESRIVEAAALFTKLKA  109 (400)
Q Consensus        34 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  109 (400)
                      |+++.... +-+...|...+....+.++.++|.++.++.+.. ++.   --...|.++++.-...|.-+...++|+++.+
T Consensus      1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            44444332 334567777777777888888888887777753 111   1234566777766667777777778877776


Q ss_pred             cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 015811          110 FGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN  189 (400)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  189 (400)
                      .  -.....|..|...|.+.+.+++|.++++.|.+..       ......|..++..+.+..+-+.|..++.++.+.-..
T Consensus      1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            4  2233456677777888888888888888887763       456677777788888877777888887777654111


Q ss_pred             -CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH--HHHH
Q 015811          190 -PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA--FTYN  266 (400)
Q Consensus       190 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  266 (400)
                       -........+..-.+.|+.+.+..+|+...... +--...|+..+..-.++|+.+.+..+|+++...++.|..  ..|.
T Consensus      1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence             012333444555567788888888887777653 334566777777777888888888888888777665542  3455


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHH
Q 015811          267 TLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       267 ~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                      ..+..--..|+-..++.+=.++.
T Consensus      1676 kwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred             HHHHHHHhcCchhhHHHHHHHHH
Confidence            55555555566555544444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.95  E-value=1e-06  Score=77.88  Aligned_cols=177  Identities=16%  Similarity=0.141  Sum_probs=108.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811          199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  278 (400)
                      +.+......|.+|+.+++.++.+.  .-..-|..+...|+..|+++.|.++|.+.         ..++-.|..|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            445556677888888888877764  23445677778888888888888887643         1345566778888888


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh----------CC-----------CCcC--HHHH
Q 015811          279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF----------KG-----------IKPT--VVTY  335 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-----------~~p~--~~~~  335 (400)
                      +.|.++-.+...  .......|-+-..-.-+.|++.+|.+++-.+..          .|           ..|+  ..|.
T Consensus       808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~  885 (1636)
T KOG3616|consen  808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH  885 (1636)
T ss_pred             HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence            888777666542  123344444444444455555554444322110          00           1122  2344


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCCCCC
Q 015811          336 NTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNSGNT  397 (400)
Q Consensus       336 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  397 (400)
                      ..+..-+-..|+...|...|-+..         -|.+-+..|..++-|++|+...+...|.+
T Consensus       886 ~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n  938 (1636)
T KOG3616|consen  886 KHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGAN  938 (1636)
T ss_pred             HHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcccccc
Confidence            455556666777777776664432         46677778888888888888877666554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.94  E-value=1.1e-06  Score=82.64  Aligned_cols=249  Identities=11%  Similarity=0.037  Sum_probs=191.6

Q ss_pred             hhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CChhhHHHHHHHHHhcCChHHHHH
Q 015811           62 VSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF-GCE---PNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        62 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                      .+.|.+.-+.+...  +-+...|-..|......++.++|.++.++.+.. ++.   --...|.++++.-..-|.-+...+
T Consensus      1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            33444444444332  345667888999999999999999999998753 111   123467788888778888899999


Q ss_pred             HHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          138 LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      +|+++.+..        ..-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+
T Consensus      1519 VFeRAcqyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1519 VFERACQYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred             HHHHHHHhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            999998854        34567889999999999999999999999876 334678899999999999999999999999


Q ss_pred             HHHCCCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 015811          218 MVDQGVQ-PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD  296 (400)
Q Consensus       218 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  296 (400)
                      .++.-.. -........+..-.+.|+.+++..+|+...... +--...|+..+..-.++|+.+.+..+|+++...+++|-
T Consensus      1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence            8876211 123445556677789999999999999988764 44577899999999999999999999999998876654


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 015811          297 --DFSYNILINGYCKNKEVEEALSLYNE  322 (400)
Q Consensus       297 --~~~~~~l~~~~~~~~~~~~A~~~~~~  322 (400)
                        -+.|...+..=-+.|+-+.+..+=.+
T Consensus      1669 kmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred             HhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence              45677777776677775554444333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.94  E-value=2.8e-07  Score=74.34  Aligned_cols=186  Identities=12%  Similarity=-0.018  Sum_probs=112.6

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH--HH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV--VT   83 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~   83 (400)
                      .....+..+...+.+.|++++|...|+++.... +.+   ..++..+..++...|+++.|...++.+.+..+....  ..
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            455667777788888888888888888887653 222   246677788888888888888888888876432111  13


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811           84 FTSLIKGLCAE--------SRIVEAAALFTKLKAFGCEPNV-ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK  154 (400)
Q Consensus        84 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  154 (400)
                      +..+..++...        |+.++|.+.++.+.+.  .|+. ..+..+.....    .      ....            
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~------------  165 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL------------  165 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH------------
Confidence            44444555443        6778888888888766  3332 22221111100    0      0000            


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                        ......+...+.+.|++++|...++...+.  +.+.....+..+..++...|++++|..+++.+...
T Consensus       166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              001123445566777777777777776543  22334556667777777777777777776666543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.94  E-value=1.6e-07  Score=82.39  Aligned_cols=220  Identities=16%  Similarity=0.099  Sum_probs=170.6

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 015811          114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV  193 (400)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  193 (400)
                      |-...=..+...+...|-...|+.+++++.               .|...+.+|...|+..+|..+..+..+.  +|+..
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle---------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~  458 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPR  458 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcch
Confidence            333344556777888899999999988764               4667788899999999999888887763  67888


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015811          194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC  273 (400)
Q Consensus       194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  273 (400)
                      .|..+........-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..
T Consensus       459 lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL  530 (777)
T KOG1128|consen  459 LYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL  530 (777)
T ss_pred             hHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence            8888888777777788888888765432       12222223344788999999998877765 556778888888888


Q ss_pred             cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHH
Q 015811          274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALK  353 (400)
Q Consensus       274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  353 (400)
                      +.++++.|.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|++
T Consensus       531 qlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence            9999999999999888764 5567789999999999999999999999998876 3366677777788888999999999


Q ss_pred             HHHHHhh
Q 015811          354 LFVEMQG  360 (400)
Q Consensus       354 ~~~~~~~  360 (400)
                      .+.++..
T Consensus       609 A~~rll~  615 (777)
T KOG1128|consen  609 AYHRLLD  615 (777)
T ss_pred             HHHHHHH
Confidence            9988773

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.7e-05  Score=67.26  Aligned_cols=318  Identities=14%  Similarity=0.080  Sum_probs=185.9

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811           51 ILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG  130 (400)
Q Consensus        51 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  130 (400)
                      +=++.+...|++++|.+...+++..+ +.+...+..=+-+....+++++|+.+.+.-...  ..+...+-.-.-+..+.+
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence            33456677899999999999999886 446677777777888999999999665543211  111111112233445789


Q ss_pred             ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--------------------
Q 015811          131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP--------------------  190 (400)
Q Consensus       131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------  190 (400)
                      ..++|+..++-..          +.+..+...-...+.+.|++++|+++|+.+.+.+.+-                    
T Consensus        94 k~Dealk~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~  163 (652)
T KOG2376|consen   94 KLDEALKTLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL  163 (652)
T ss_pred             cHHHHHHHHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence            9999999998322          2344567777888999999999999999985443210                    


Q ss_pred             -------ChHhHHHHH---HHHHhcCCHHHHHHHHHHHHHCC-------CCCCc-------ccHHHHHHHHHhcCCchhH
Q 015811          191 -------NVVTYTSLI---HGFCHANDWNEAKGLLIEMVDQG-------VQPNV-------VSSNVIMNELCKNGKMDNA  246 (400)
Q Consensus       191 -------~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~~~a  246 (400)
                             ...+|..+.   -.+...|++.+|+++++.....+       -..+.       ..-..+..++...|+-++|
T Consensus       164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence                   112333333   33456799999999999883221       00001       1122345567789999999


Q ss_pred             HHHHHHHHhCCCCCcHHHH----HHHHHHHHcCCChHH--------------HHHHHHH---------------------
Q 015811          247 SRLLDLMVQCDVRPNAFTY----NTLMDGFCLTGKINR--------------VKELFVS---------------------  287 (400)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~--------------a~~~~~~---------------------  287 (400)
                      ..++...++.. ++|....    |.|+.. ....++-.              +......                     
T Consensus       244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  244 SSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999988876 4444222    222211 11111000              0000000                     


Q ss_pred             -------H-Hhc-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHhhhhhCCCCcCH--HHHHHHHHHHhccchHHHHHHH
Q 015811          288 -------M-ESM-GCKHDDFSYNILINGYCK--NKEVEEALSLYNELPFKGIKPTV--VTYNTLFHGLFEIRQAERALKL  354 (400)
Q Consensus       288 -------~-~~~-~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~  354 (400)
                             . ... +..| ...+..++..+.+  ......|..++...-+.  .|..  ...-..+......|+++.|+++
T Consensus       322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence                   0 000 1112 2233344433322  22466677777766655  3333  3444556677889999999999


Q ss_pred             HH--------HHhhCCCCCChhhHHHHHHHhhcCCcchhhHh
Q 015811          355 FV--------EMQGNDVAADTCTYRTFIDGLCVRPQVRFTYA  388 (400)
Q Consensus       355 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  388 (400)
                      +.        .+.+.+..|-  +...++..+.+.++-+.|-.
T Consensus       399 l~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~  438 (652)
T KOG2376|consen  399 LSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASA  438 (652)
T ss_pred             HHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHH
Confidence            98        5555555444  44455555666665554433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=2.8e-06  Score=75.98  Aligned_cols=230  Identities=13%  Similarity=0.087  Sum_probs=154.4

Q ss_pred             HHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-c-------C-CccHHHHHHHHHH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-C-------F-APNVVTFTSLIKG   90 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~   90 (400)
                      .|...|+.+.|.+-.+.+.      +...|..+...|.+..+++-|.-.+..|... |       . .|+ ..=......
T Consensus       737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            3566788888877766654      5568999999999999988888777666532 1       1 121 222233334


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                      ....|..++|+.+|++.++.         ..|-..|-..|++++|.++-+.-....         -..||......+-..
T Consensus       810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEAR  871 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhh
Confidence            45779999999999998754         345566777899999998876533321         234666677777778


Q ss_pred             CChHHHHHHHHHHH----------HcC---------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 015811          171 GFVDKAKELFLQMK----------YEN---------LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN  231 (400)
Q Consensus       171 ~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  231 (400)
                      ++.+.|++.|++..          ...         -..|...|......+-..|+.+.|+.++.....         |.
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f  942 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF  942 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence            88888888887632          110         112444555555555666777777777765543         34


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                      .+++..|-.|+.++|.++-++-      -|....-.|.+.|-..|++.+|..+|.+..
T Consensus       943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            5566667778888777765542      355666678888888899888888887764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.89  E-value=1.4e-06  Score=67.35  Aligned_cols=159  Identities=12%  Similarity=0.044  Sum_probs=107.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII  164 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (400)
                      ..+-..+.-.|+-+....+........ +.+......++....+.|++.+|+..+++.....       ++|...|+.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~~~~lg  141 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEAWNLLG  141 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhhhhHHH
Confidence            445566666677666666666644321 3344555567777777777777777777777764       67777777777


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      -+|.+.|+++.|..-|.+..+... -+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|+++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence            777777777777777777776532 245566677777777777777777777777654 335566666777777777777


Q ss_pred             hHHHHHHHH
Q 015811          245 NASRLLDLM  253 (400)
Q Consensus       245 ~a~~~~~~~  253 (400)
                      +|..+...-
T Consensus       220 ~A~~i~~~e  228 (257)
T COG5010         220 EAEDIAVQE  228 (257)
T ss_pred             HHHhhcccc
Confidence            777766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.88  E-value=3.9e-07  Score=80.13  Aligned_cols=239  Identities=15%  Similarity=0.046  Sum_probs=186.3

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      +.||--..-..+...+...|-...|+.+|+++.         .|..++.+|...|+..+|..+..+-.+.  +|+...|.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc  461 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC  461 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence            344555566677888899999999999998875         3677788999999999999999888884  78999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID  165 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (400)
                      .+.++.....-+++|.++.+.....       +-..+.....+.+++.++.+.|+.-...+       +....+|-.+..
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~  527 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGC  527 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccH
Confidence            9999988888888898888765432       22233333445789999999999888775       567788888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811          166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN  245 (400)
Q Consensus       166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  245 (400)
                      +..+.++++.|.+.|....... +-+...|+++-.+|.+.++-.+|...+.+..+.+ .-+...+...+....+.|.++.
T Consensus       528 ~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed  605 (777)
T KOG1128|consen  528 AALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED  605 (777)
T ss_pred             HHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence            9999999999999999887642 3356889999999999999999999999999876 4456677777778889999999


Q ss_pred             HHHHHHHHHhCC-CCCcHHHHHHHHHH
Q 015811          246 ASRLLDLMVQCD-VRPNAFTYNTLMDG  271 (400)
Q Consensus       246 a~~~~~~~~~~~-~~~~~~~~~~l~~~  271 (400)
                      |.+.+..+.... ...|..+...++..
T Consensus       606 a~~A~~rll~~~~~~~d~~vl~~iv~~  632 (777)
T KOG1128|consen  606 AIKAYHRLLDLRKKYKDDEVLLIIVRT  632 (777)
T ss_pred             HHHHHHHHHHhhhhcccchhhHHHHHH
Confidence            999998875432 11244444444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.84  E-value=1.6e-06  Score=67.12  Aligned_cols=116  Identities=9%  Similarity=0.077  Sum_probs=53.9

Q ss_pred             CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 015811          242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGY-CKNKE--VEEALS  318 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~  318 (400)
                      +.+++...++...+.+ +.+...|..+...|...|+++.|...+++..+.. +.+...+..+..++ ...|+  .++|..
T Consensus        54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            3344444444444433 3344455555555555555555555555554443 23444444444432 33343  255555


Q ss_pred             HHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          319 LYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       319 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      ++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus       132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555444221 334444444445555555555555555544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=6.1e-06  Score=63.98  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      ..+|.-+|++|-+. .+|+..+.+-.+.++...|++++|..+++....
T Consensus       189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            34444444444332 233333344444444444444444444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.84  E-value=1.7e-06  Score=69.80  Aligned_cols=187  Identities=9%  Similarity=-0.055  Sum_probs=132.8

Q ss_pred             CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---h
Q 015811           44 PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-P-NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI---T  118 (400)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~  118 (400)
                      .....+..+...+...|+++.|...++++....+. | ....+..+..++...|++++|...++++.+.. +.+..   +
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence            35677888888999999999999999999886422 1 12467778899999999999999999999764 22222   4


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 015811          119 YNTLINGLCRT--------GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP  190 (400)
Q Consensus       119 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  190 (400)
                      +..+..++...        |+.++|.+.++.+....       +.+...+..+.....    ...      ...      
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~----~~~------~~~------  166 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDY----LRN------RLA------  166 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHH----HHH------HHH------
Confidence            55555556554        77899999999998764       222233322221111    000      000      


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811          191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV--QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                        .....+...+.+.|++.+|...++...+...  +.....+..+..++...|++++|..+++.+...
T Consensus       167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              1122456678899999999999999987632  223467888999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=2.3e-06  Score=66.18  Aligned_cols=164  Identities=13%  Similarity=0.071  Sum_probs=123.5

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811          156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMN  235 (400)
Q Consensus       156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  235 (400)
                      |... ..+-..+...|+-+....+....... .+.|......++....+.|++..|...+.+..... ++|...++.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence            3444 55666777778888777777775533 23355556667888888888888888888887764 678888888888


Q ss_pred             HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811          236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE  315 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  315 (400)
                      +|.+.|+++.|..-|.+..+.. +-++..++.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|++++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence            8888888888888888888764 4456777888888888888888888888887764 3366677778888888888888


Q ss_pred             HHHHHhhhh
Q 015811          316 ALSLYNELP  324 (400)
Q Consensus       316 A~~~~~~~~  324 (400)
                      |..+...-.
T Consensus       221 A~~i~~~e~  229 (257)
T COG5010         221 AEDIAVQEL  229 (257)
T ss_pred             HHhhccccc
Confidence            888776544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.81  E-value=5.3e-06  Score=77.13  Aligned_cols=235  Identities=10%  Similarity=0.084  Sum_probs=135.7

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      .|.+..+|..|+..+...+++++|.++.+...+.  .|+ ...|..+...+.+.++.+++.-+                 
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------   87 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------   87 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence            3567788889999998999999999999877665  343 34444444466666665544433                 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID  165 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (400)
                      .++.......++.-...+...+.+.  .-+..++..+..+|-+.|+.++|..+++++.+..       +-|+.+.|.+..
T Consensus        88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY  158 (906)
T PRK14720         88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLAT  158 (906)
T ss_pred             hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHH
Confidence            2333333333443333333344433  2233456666667777777777777777776654       456666677776


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH---H--HhcCCHHHHHHHHHHHHHC-CCCCCcccHHHHHHHHHh
Q 015811          166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG---F--CHANDWNEAKGLLIEMVDQ-GVQPNVVSSNVIMNELCK  239 (400)
Q Consensus       166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~  239 (400)
                      .|... +.++|.+++.+....-+  +..-|+.+...   +  ....+.+.-..+.+.+..+ +..--..++..+...|-.
T Consensus       159 ~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~  235 (906)
T PRK14720        159 SYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA  235 (906)
T ss_pred             HHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence            66666 77777776666654311  11111111110   0  1112233333333443333 222234455566677778


Q ss_pred             cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015811          240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC  273 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  273 (400)
                      ..+++++..+++.+.+.. +.+.....-++.+|.
T Consensus       236 ~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        236 LEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            888888888888888876 446666777777665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.80  E-value=6.1e-07  Score=69.39  Aligned_cols=119  Identities=11%  Similarity=0.107  Sum_probs=99.3

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH-HhcCC--HHHHH
Q 015811           25 KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL-CAESR--IVEAA  101 (400)
Q Consensus        25 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~  101 (400)
                      ++.++++..++...+.+ +.+...|..+...|...|+++.|...|++..+..+ .+...+..+..++ ...|+  .++|.
T Consensus        53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            34456666666666554 66889999999999999999999999999999863 3778888888764 67777  59999


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +++++..+.+ +.+..++..+...+...|++++|+..++++.+..
T Consensus       131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            9999999886 5577888999999999999999999999999875

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=4.8e-05  Score=69.99  Aligned_cols=212  Identities=15%  Similarity=0.176  Sum_probs=151.4

Q ss_pred             HHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015811          126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA  205 (400)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (400)
                      +...+-+++|..+|++.           ..+....+.++.-   -+..+.|.++-++..      .+..|..+..+-.+.
T Consensus      1058 ai~~~LyEEAF~ifkkf-----------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred             HhhhhHHHHHHHHHHHh-----------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhc
Confidence            33444556666666553           2333344444432   244555555444332      456788888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHH
Q 015811          206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELF  285 (400)
Q Consensus       206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  285 (400)
                      |...+|++-|-+.      .|+..|..++....+.|.+++..+.+....+..-.|.  .=..|+-+|++.++..+.+.++
T Consensus      1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence            9888888776432      3677899999999999999999999988877654444  3457888899998877655543


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCC
Q 015811          286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAA  365 (400)
Q Consensus       286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  365 (400)
                             ..||......+.+-|...|.++.|.-+|.         ++..|..|...+...|++..|...-++.-      
T Consensus      1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred             -------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence                   25788888889999999999999988875         45568888888999999999887766542      


Q ss_pred             ChhhHHHHHHHhhcCCcchhhH
Q 015811          366 DTCTYRTFIDGLCVRPQVRFTY  387 (400)
Q Consensus       366 ~~~~~~~l~~~~~~~g~~~~a~  387 (400)
                      +..||..+-.+|...+.+.-|.
T Consensus      1248 s~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred             chhHHHHHHHHHhchhhhhHHH
Confidence            5568988888888888777653

>PF12854 PPR_1: PPR repeat

Probab=98.78  E-value=1.5e-08  Score=52.83  Aligned_cols=32  Identities=50%  Similarity=1.071  Sum_probs=15.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811          292 GCKHDDFSYNILINGYCKNKEVEEALSLYNEL  323 (400)
Q Consensus       292 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  323 (400)
                      |+.||..+|+.++.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34445555555555555555555555544444

>PF12854 PPR_1: PPR repeat

Probab=98.78  E-value=9.5e-09  Score=53.55  Aligned_cols=33  Identities=45%  Similarity=0.769  Sum_probs=26.2

Q ss_pred             CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      |+.||..+|+.||.+|++.|+.++|.++|++|.
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677888888888888888888888888887763

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.76  E-value=5e-06  Score=75.95  Aligned_cols=166  Identities=12%  Similarity=0.041  Sum_probs=114.4

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-ccHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-PNVVTFTSLI   88 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~   88 (400)
                      =..+|..|...|....+...|...|+...+.+ ..+...+......|++..+++.|..+.-..-+.... .-...|....
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG  569 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG  569 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence            34577788888887778888888888887765 457778888888888888888888873333222110 0112233344


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh-hhHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT-VTYSIIIDGL  167 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~  167 (400)
                      -.|.+.++...|..-|+...+.. +.|...|..+..+|.+.|++..|+++|.++....        |+. ..---..-.-
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVME  640 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHH
Confidence            45667788888888888877665 5577888899999999999999999998887643        332 2212222334


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 015811          168 CKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~  185 (400)
                      +..|.+.++...+.....
T Consensus       641 cd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  641 CDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHhhhHHHHHHHHHHHHH
Confidence            567888888888777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=5.8e-06  Score=64.10  Aligned_cols=88  Identities=24%  Similarity=0.115  Sum_probs=40.7

Q ss_pred             HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH----cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811          235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC----LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN  310 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  310 (400)
                      ..+.+..+++-|.+.++.|.+.+   +..+++.|..++.    ..+.+.+|..+|+++.+.- +|+..+.+....++...
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~  220 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHh
Confidence            33444444555555555554421   3334443333332    1233445555555554421 44555555555555555


Q ss_pred             CCHHHHHHHHhhhhhC
Q 015811          311 KEVEEALSLYNELPFK  326 (400)
Q Consensus       311 ~~~~~A~~~~~~~~~~  326 (400)
                      |++++|..++++...+
T Consensus       221 ~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  221 GRYEEAESLLEEALDK  236 (299)
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            5555555555555444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.74  E-value=1.1e-05  Score=74.19  Aligned_cols=135  Identities=10%  Similarity=0.068  Sum_probs=85.7

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      +.+...+..|.....+.|.+++|..+++.+.+.. +.+......+..++.+.+++++|...+++..... +-+......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence            3346666666666666777777777777766653 2245555666666667777777777777666653 3344555556


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE  186 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  186 (400)
                      ..++...|++++|..+|+++...+       +.+..++..+...+...|+.++|...|+...+.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666777777777777766532       344566666666666677777777777666654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.72  E-value=1.5e-06  Score=79.77  Aligned_cols=137  Identities=11%  Similarity=0.036  Sum_probs=121.9

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.++.++-.|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|...+++..+..+. +......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence            45678999999999999999999999999999874 446778888999999999999999999999998633 7778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999843 4557899999999999999999999999998765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.71  E-value=2e-05  Score=73.40  Aligned_cols=239  Identities=10%  Similarity=0.022  Sum_probs=144.7

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..|+..+...+++++|.++.+...+..+. ....|..+...+...++...+..+                 .++.
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~   91 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID   91 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence            4567788888888888888888888866665321 333333344455566654444333                 2333


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      ......++.....+...+...        .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.+.+...|..
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE  162 (906)
T ss_pred             hcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence            333334443334444444442        3455577888888889999999999999998876 4477888888888888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHH
Q 015811          205 ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKEL  284 (400)
Q Consensus       205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  284 (400)
                      . ++++|..++.+....               +...+++..+.++|.++.... +.+...+..+.+.....         
T Consensus       163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~---------  216 (906)
T PRK14720        163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH---------  216 (906)
T ss_pred             h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh---------
Confidence            8 889988888877654               555667777777777776653 22222222222211111         


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHh
Q 015811          285 FVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLF  343 (400)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  343 (400)
                            .+..--..++-.+-..|...++|+++..+++.+.+.... |.....-++.+|.
T Consensus       217 ------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        217 ------REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             ------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence                  011223344555556666677777777777777765322 4444555555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.71  E-value=1.2e-06  Score=64.06  Aligned_cols=92  Identities=11%  Similarity=-0.068  Sum_probs=43.6

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR   96 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   96 (400)
                      +...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+.....+ +.+...+..+..++...|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence            3444444555555555555544433 2344444444445555555555555555554433 2244444444444445555


Q ss_pred             HHHHHHHHHHHHHc
Q 015811           97 IVEAAALFTKLKAF  110 (400)
Q Consensus        97 ~~~a~~~~~~~~~~  110 (400)
                      +++|...|+...+.
T Consensus       108 ~~eAi~~~~~Al~~  121 (144)
T PRK15359        108 PGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555554443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.70  E-value=1.5e-06  Score=63.62  Aligned_cols=110  Identities=13%  Similarity=0.025  Sum_probs=94.2

Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           31 LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        31 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      ..+|++..+.  .|+  .+......+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.
T Consensus        13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4566666654  244  35567888899999999999999999875 448889999999999999999999999999987


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      . +.+...+..+..++...|+.++|+..|+......
T Consensus        88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5 6688899999999999999999999999998864

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=5.2e-05  Score=68.33  Aligned_cols=217  Identities=15%  Similarity=0.110  Sum_probs=146.4

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhC-CC--------CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-GL--------FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN   80 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   80 (400)
                      +-..|..+...|.+.++++-|.-.+-.|... |.        .|+ ..-....-.....|-+++|..+|++..+.     
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----  829 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----  829 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence            4568999999999999999888777666432 11        122 22223333456789999999999988763     


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc----------
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG----------  150 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------  150 (400)
                          ..|=+.|-..|.+++|.++-+.--+..   =-.||.....-+-..++.+.|++.|++.....-+..          
T Consensus       830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~  902 (1416)
T KOG3617|consen  830 ----DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI  902 (1416)
T ss_pred             ----HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence                334456667899999988766533222   224566666666677888888888776432211000          


Q ss_pred             ---ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 015811          151 ---VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV  227 (400)
Q Consensus       151 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  227 (400)
                         ..-..|...|.-....+-..|+.+.|+.+|....+         |-.+++..+-.|+.++|-.+-++   .|   |.
T Consensus       903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~  967 (1416)
T KOG3617|consen  903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG---DK  967 (1416)
T ss_pred             HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---cc---cH
Confidence               00122445566666666677888888888877653         45666777788999999887653   22   56


Q ss_pred             ccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          228 VSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      .....+.+.|-..|++.+|..+|.+..
T Consensus       968 AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  968 AACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            667778899999999999999887653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=6.8e-05  Score=57.94  Aligned_cols=188  Identities=12%  Similarity=0.053  Sum_probs=130.4

Q ss_pred             cCChHHHHHHHHHHHHc---C-CCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          170 EGFVDKAKELFLQMKYE---N-LNPNV-VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      ..+.++..+++..+...   | ..++. ..|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            35667777777777643   3 33444 345566667777888889999888888763 334444333344456788899


Q ss_pred             hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      +|+++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999888876 556666665555556677777787777777664 36688899999999999999999999999887


Q ss_pred             hCCCCcCHHHHHHHHHHHhccc---hHHHHHHHHHHHhhC
Q 015811          325 FKGIKPTVVTYNTLFHGLFEIR---QAERALKLFVEMQGN  361 (400)
Q Consensus       325 ~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~  361 (400)
                      -.. +.++..+..+...+.-.|   +..-+.++|.+.++.
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            652 235555666666554433   566778888887764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=8.5e-05  Score=62.96  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcC
Q 015811          128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN-VVTYTSLIHGFCHAN  206 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  206 (400)
                      ..|++++|+..++.+....       |-|...+......+.+.++..+|.+.++++...  .|+ ......+..++.+.|
T Consensus       318 ~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g  388 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence            4444555555555544432       333444444444455555555555555554443  222 333334444445555


Q ss_pred             CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811          207 DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA  246 (400)
Q Consensus       207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  246 (400)
                      ++.+|..+++...... +.|+..|..|.++|...|+..++
T Consensus       389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence            5555555554444432 33444455555555554444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.62  E-value=3.8e-06  Score=61.14  Aligned_cols=110  Identities=15%  Similarity=0.053  Sum_probs=68.2

Q ss_pred             HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015811           33 LFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC  112 (400)
Q Consensus        33 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  112 (400)
                      .|++..... +.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++...+.+ 
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            344444432 2234445555666666777777777777766654 3355666666677777777777777777666554 


Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811          113 EPNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus       113 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      +.+...+..+...+...|++++|...|+...+.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445556666666677777777777777766664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.62  E-value=1.9e-06  Score=62.74  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=92.7

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |.+......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+
T Consensus        14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l   91 (135)
T TIGR02552        14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA   91 (135)
T ss_pred             hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence            4456677788889999999999999999998876 5588899999999999999999999999998875 4467788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYN  120 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  120 (400)
                      ..++...|++++|...|+...+.  .|+...+.
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~  122 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEI--CGENPEYS  122 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence            89999999999999999999987  45554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=0.00018  Score=55.74  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=34.4

Q ss_pred             cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 015811          129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDW  208 (400)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  208 (400)
                      .|++++|+++++.+.+.+       |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++
T Consensus        99 ~~~~~~A~e~y~~lL~dd-------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDD-------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             hhchhhHHHHHHHHhccC-------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHH
Confidence            344444444444444433       333333333333333334444444444333332 223444444444444444444


Q ss_pred             HHHHHHHHHHH
Q 015811          209 NEAKGLLIEMV  219 (400)
Q Consensus       209 ~~a~~~~~~~~  219 (400)
                      ++|.-.++++.
T Consensus       171 ~kA~fClEE~l  181 (289)
T KOG3060|consen  171 EKAAFCLEELL  181 (289)
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.52  E-value=0.00018  Score=64.33  Aligned_cols=46  Identities=15%  Similarity=0.218  Sum_probs=28.5

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIF   69 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~   69 (400)
                      ....|+++.|...++....   .|+. ..|..+.......|++--|...|
T Consensus       454 aid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercf  500 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCF  500 (1636)
T ss_pred             ccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHH
Confidence            4567899999998887653   3554 45666665555555544444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=0.00013  Score=61.91  Aligned_cols=116  Identities=15%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF  172 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (400)
                      ..|++++|+..++.+++.- +-|+..+......+.+.++..+|.+.++++....       +......-.+..++.+.|+
T Consensus       318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHHHHHHHHHHhcCC
Confidence            4455555555555544431 2233333333444555555555555555554432       1123344444455555555


Q ss_pred             hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      +.+|+.+++...... +-|...|..|.++|...|+..++..-..+
T Consensus       390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            555555555444332 23444555555555555555444444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.48  E-value=7.3e-05  Score=68.73  Aligned_cols=136  Identities=13%  Similarity=0.075  Sum_probs=99.7

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      .|.+..++....+.|++..+++.|..+.-..-+.. ...-...|....-.|...++...|...|+...+..+. |...|.
T Consensus       522 Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~  600 (1238)
T KOG1127|consen  522 DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWL  600 (1238)
T ss_pred             CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHH
Confidence            35678889999999999999999999833322211 0011233445556677889999999999999988644 889999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNV-ITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      .+..+|.+.|++..|.++|.+....  .|+. ..-.-....-+..|.+.+|+..+..+...
T Consensus       601 gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  601 GLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999998865  3432 22222333455688899998888776543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.44  E-value=2.1e-05  Score=57.84  Aligned_cols=127  Identities=12%  Similarity=0.030  Sum_probs=97.5

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--HHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--VVTFTS   86 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~   86 (400)
                      ..|..++..+ ..++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+......++  ......
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4566777766 4899999999999998864 333   23445566788899999999999999999763333  234555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM  142 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  142 (400)
                      +..++...|++++|+..++.....  ......+......+.+.|+.++|...|+..
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            788899999999999999775433  334556777889999999999999999864

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.44  E-value=1.9e-05  Score=67.23  Aligned_cols=124  Identities=16%  Similarity=0.158  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL  274 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  274 (400)
                      ...++..+...++++.|..+++++.+..  |+  ....+++.+...++..+|.+++++..+.. +.+...+..-...+..
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3445555555667777777777776653  22  34456666666667777777777766543 4455566666666777


Q ss_pred             CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          275 TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       275 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      .++++.|..+.+++.+.. |-+-.+|..|..+|...|+++.|+..+..+.
T Consensus       247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            777777777777777653 3334477777777777777777777776654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.41  E-value=3e-05  Score=57.01  Aligned_cols=115  Identities=11%  Similarity=0.061  Sum_probs=50.7

Q ss_pred             cCCchhHHHHHHHHHhCCCCCc---HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 015811          240 NGKMDNASRLLDLMVQCDVRPN---AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD--DFSYNILINGYCKNKEVE  314 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~  314 (400)
                      .++...+...++.+.+.. +.+   ....-.+...+...|++++|...|+.+......|+  ......+...+...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            444555555555554432 111   11122233444555555555555555554431111  112223444455555555


Q ss_pred             HHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHH
Q 015811          315 EALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVE  357 (400)
Q Consensus       315 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  357 (400)
                      +|+..++.....  ......+......+.+.|++++|...|+.
T Consensus       103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555555443322  12233344444455555555555555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.40  E-value=2.1e-05  Score=66.96  Aligned_cols=125  Identities=18%  Similarity=0.145  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      ....|+..+...++++.|..+|+++.+..  |+  ....++..+...++..+|.+++++.....       +.+......
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-------p~d~~LL~~  239 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-------PQDSELLNL  239 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence            34455666666777777777777777552  33  34456666666777777777777777543       445556666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811          163 IIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV  219 (400)
Q Consensus       163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  219 (400)
                      ....+.+.++++.|+++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus       240 Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  240 QAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            6666777777777777777777652 2244577777777777777777777776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.36  E-value=8.7e-07  Score=46.61  Aligned_cols=33  Identities=33%  Similarity=0.536  Sum_probs=26.0

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP   44 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~   44 (400)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            577888888888888888888888888777766

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.35  E-value=9.7e-07  Score=46.81  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD   45 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~   45 (400)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888887776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.30  E-value=2e-05  Score=67.36  Aligned_cols=121  Identities=15%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC--CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH
Q 015811          224 QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC--DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYN  301 (400)
Q Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  301 (400)
                      +.+......++..+....+.+.+..++.+....  ....-+.|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            344445555555555555555555555555443  111222344455566666666666666665555566666666666


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc
Q 015811          302 ILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE  344 (400)
Q Consensus       302 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  344 (400)
                      .|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            6666666666666666655555544444444444444444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.28  E-value=2.6e-05  Score=66.69  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAF--GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT  157 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  157 (400)
                      +......+++.+....+.+.+..++.+.+..  ....-..|..++++.|...|..++++.+++.=...|      +-||.
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG------iF~D~  138 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG------IFPDN  138 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc------cCCCh
Confidence            3334444444444444455555555444432  111122333455555555555555555555444444      44555


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811          158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC  203 (400)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  203 (400)
                      .+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus       139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            5555555555555555555555544444433333344443333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.27  E-value=2.1e-05  Score=52.51  Aligned_cols=77  Identities=18%  Similarity=0.374  Sum_probs=51.1

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHhccCCccHHHHHH
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYSILINCFCKMG--------QVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      ..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|+..+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345566667788888888888887777 777888887777766542        23345566666666666666666666


Q ss_pred             HHHHHH
Q 015811           87 LIKGLC   92 (400)
Q Consensus        87 l~~~~~   92 (400)
                      ++..+.
T Consensus       110 vl~~Ll  115 (120)
T PF08579_consen  110 VLGSLL  115 (120)
T ss_pred             HHHHHH
Confidence            665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.27  E-value=0.0034  Score=57.61  Aligned_cols=107  Identities=12%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHH
Q 015811           22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINC--FCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVE   99 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   99 (400)
                      ...+++.+|++....+.+.  .|+.. |..++.+  +.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            3455666666666666554  23322 2222332  34566666666666665554433 56666666666666666666


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811          100 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV  134 (400)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  134 (400)
                      |..+|++....  .|+......+..+|.+.+++.+
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence            66666666654  4555555556666666555543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.22  E-value=2.2e-06  Score=45.42  Aligned_cols=33  Identities=45%  Similarity=0.684  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD  366 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  366 (400)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            355555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.21  E-value=8.3e-05  Score=52.60  Aligned_cols=100  Identities=10%  Similarity=-0.044  Sum_probs=76.6

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNVVTFTSL   87 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l   87 (400)
                      .++..++..+.+.|++++|.+.|+.+......  .....+..+..++.+.|+++.|.+.|+.+....+.  ....++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            45667788888899999999999998765311  12456777888889999999999999988875322  124567777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFG  111 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~  111 (400)
                      ..++...|+.++|...++++.+..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            888888999999999999988774

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.21  E-value=0.0046  Score=56.81  Aligned_cols=200  Identities=15%  Similarity=0.152  Sum_probs=134.1

Q ss_pred             HHHHHHH--HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           14 FNILLGC--LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        14 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      |..++.+  +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+.  .|+......+..+|
T Consensus        44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay  120 (932)
T KOG2053|consen   44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY  120 (932)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence            3344444  45789999999999988766533 8889999999999999999999999999987  46688888888999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-C---------hHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG-H---------TIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      .+.+.+.+-.+.--++.+. .+-....+-++++.+.... .         ..-|.+.++.+.+.++     .-.+..-..
T Consensus       121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-----k~~s~aE~~  194 (932)
T KOG2053|consen  121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-----KIESEAEII  194 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-----ccchHHHHH
Confidence            9998877655554444443 2445555555655554322 1         1235556666665442     111222233


Q ss_pred             HHHHHHHhcCChHHHHHHHHH-HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811          162 IIIDGLCKEGFVDKAKELFLQ-MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG  222 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  222 (400)
                      .....+...|++++|.+++.. ..+.-...+...-+.-+..+...++|.+..++..++...|
T Consensus       195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            344556677889999999843 3333223334444456667777788888888888888775

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.19  E-value=4e-06  Score=44.02  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015811           82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEP  114 (400)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (400)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.17  E-value=5.7e-05  Score=50.85  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      ++..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            34556666677777777777777776653 3344566666677777777777777777766654 224456666666777


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 015811           93 AESRIVEAAALFTKLKAF  110 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~  110 (400)
                      ..|+++.|...+....+.
T Consensus        80 ~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          80 KLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHhHHHHHHHHHHHHcc
Confidence            777777777777666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.16  E-value=0.00011  Score=55.92  Aligned_cols=86  Identities=7%  Similarity=0.008  Sum_probs=48.9

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      ....|..+...+...|++++|...|++..+.+..+.  ...+..+..++.+.|++++|...+++..+... .+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence            444556666666666667777666666654332221  34566666666666666666666666666432 234445555


Q ss_pred             HHHHHhcCC
Q 015811           88 IKGLCAESR   96 (400)
Q Consensus        88 ~~~~~~~~~   96 (400)
                      ..++...|+
T Consensus       113 g~~~~~~g~  121 (172)
T PRK02603        113 AVIYHKRGE  121 (172)
T ss_pred             HHHHHHcCC
Confidence            555555554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.13  E-value=0.00015  Score=51.25  Aligned_cols=100  Identities=14%  Similarity=-0.003  Sum_probs=80.7

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHH
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE--PNVITYNTL  122 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l  122 (400)
                      .++..+...+.+.|++++|.+.|+.+.+....  .....+..+..++...|+++.|...|+.+......  .....+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            45677788889999999999999999876422  12456677899999999999999999999875311  124567788


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCC
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ..++...|+.++|...++++....
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            889999999999999999998865

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.13  E-value=0.0045  Score=53.64  Aligned_cols=175  Identities=9%  Similarity=0.038  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHH
Q 015811          208 WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFV  286 (400)
Q Consensus       208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  286 (400)
                      .+.....+++++..-..--.-+|-..+....+..-++.|..+|.++.+.+..+ +..+.++++..++ .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            55566666666654322233567777888888889999999999999988776 6677788887665 678899999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcC--HHHHHHHHHHHhccchHHHHHHHHHHHhhC---
Q 015811          287 SMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPT--VVTYNTLFHGLFEIRQAERALKLFVEMQGN---  361 (400)
Q Consensus       287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  361 (400)
                      .-.+.- ..++..-...+..+...++-..|..+|++....++.|+  ...|..++..-..-|+...+.++-+++...   
T Consensus       426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~  504 (656)
T KOG1914|consen  426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA  504 (656)
T ss_pred             HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence            876642 34455556778888899999999999999998865554  468999999888999999999988876532   


Q ss_pred             CCCCChhhHHHHHHHhhcCCcch
Q 015811          362 DVAADTCTYRTFIDGLCVRPQVR  384 (400)
Q Consensus       362 ~~~~~~~~~~~l~~~~~~~g~~~  384 (400)
                      ...+....-..+++.|.-.+.+.
T Consensus       505 ~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  505 DQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             hhcCCCChHHHHHHHHhhccccc
Confidence            13333344455666666555544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.12  E-value=0.004  Score=52.76  Aligned_cols=81  Identities=15%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      ..|.|..+|-.|+..+..++.+++..+++++|..- .+-=..+|...+..-...+++.....+|.+.+....  +...|.
T Consensus        37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~  113 (660)
T COG5107          37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM  113 (660)
T ss_pred             cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence            35789999999999999999999999999999753 122345677777776777788888888888777633  344444


Q ss_pred             HHHH
Q 015811           86 SLIK   89 (400)
Q Consensus        86 ~l~~   89 (400)
                      ..+.
T Consensus       114 lYl~  117 (660)
T COG5107         114 LYLE  117 (660)
T ss_pred             HHHH
Confidence            4443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.10  E-value=7.2e-05  Score=50.34  Aligned_cols=89  Identities=18%  Similarity=0.202  Sum_probs=38.7

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchH
Q 015811          269 MDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQA  348 (400)
Q Consensus       269 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  348 (400)
                      ...+...|++++|...++++.+.. +.+...+..+..++...+++++|...++...... +.+...+..+...+...|++
T Consensus         7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   84 (100)
T cd00189           7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY   84 (100)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence            333444444444444444444332 2222334444444444455555555544444332 11223344444444445555


Q ss_pred             HHHHHHHHHHh
Q 015811          349 ERALKLFVEMQ  359 (400)
Q Consensus       349 ~~a~~~~~~~~  359 (400)
                      ++|...+....
T Consensus        85 ~~a~~~~~~~~   95 (100)
T cd00189          85 EEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.09  E-value=8.9e-05  Score=53.57  Aligned_cols=100  Identities=9%  Similarity=-0.092  Sum_probs=74.3

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +......+...+...|++++|.++|+.+....+. +...|-.|.-++-..|++.+|+..|....... +-++..+-.+..
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~  111 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            3344555566667788888888888887776432 66667777788888888888888888887776 456777777888


Q ss_pred             HHHhcCChHHHHHHHHHHHcCC
Q 015811          125 GLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++...|+.+.|.+.|+......
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            8888888888888888776664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.07  E-value=0.0002  Score=61.20  Aligned_cols=101  Identities=8%  Similarity=0.002  Sum_probs=82.8

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES   95 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   95 (400)
                      .-...+...|++++|++.|+++.+.. +.+...|..+..++...|+++.|+..++.+++... .+...|..+..+|...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence            34566778899999999999998876 45778888889999999999999999999998753 36778888889999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHH
Q 015811           96 RIVEAAALFTKLKAFGCEPNVITYN  120 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~~~~~~~~~~~  120 (400)
                      ++++|...|++..+..  |+.....
T Consensus        85 ~~~eA~~~~~~al~l~--P~~~~~~  107 (356)
T PLN03088         85 EYQTAKAALEKGASLA--PGDSRFT  107 (356)
T ss_pred             CHHHHHHHHHHHHHhC--CCCHHHH
Confidence            9999999999998863  4443333

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.06  E-value=0.00012  Score=48.97  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhh
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCF-APNVVTFTSLIKGLCAES--------RIVEAAALFTKLKAFGCEPNVIT  118 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  118 (400)
                      +....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|+..+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            345566677778999999999999999999 899999999998877653        34567889999999999999999


Q ss_pred             HHHHHHHHHh
Q 015811          119 YNTLINGLCR  128 (400)
Q Consensus       119 ~~~l~~~~~~  128 (400)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.06  E-value=0.00017  Score=61.70  Aligned_cols=90  Identities=13%  Similarity=-0.015  Sum_probs=51.7

Q ss_pred             HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 015811          235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVE  314 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  314 (400)
                      ..+...|+++.|...|..+++.. +.+...+..+..+|...|++++|...++++.+.. +.+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            34445566666666666665544 3345555555556666666666666666665554 334555555666666666666


Q ss_pred             HHHHHHhhhhhC
Q 015811          315 EALSLYNELPFK  326 (400)
Q Consensus       315 ~A~~~~~~~~~~  326 (400)
                      +|...|++..+.
T Consensus        88 eA~~~~~~al~l   99 (356)
T PLN03088         88 TAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            666666665554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.04  E-value=0.00021  Score=51.72  Aligned_cols=87  Identities=11%  Similarity=-0.030  Sum_probs=40.5

Q ss_pred             HHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHH
Q 015811          271 GFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAER  350 (400)
Q Consensus       271 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  350 (400)
                      .+...|++++|..+|+.+...+ +.+..-|-.|..++-..|++++|+..|.......+. |+..+-.+..++...|+.+.
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence            3344455555555555544443 233444444444444555555555555544443321 34444444444555555555


Q ss_pred             HHHHHHHHh
Q 015811          351 ALKLFVEMQ  359 (400)
Q Consensus       351 a~~~~~~~~  359 (400)
                      |.+.|+..+
T Consensus       122 A~~aF~~Ai  130 (157)
T PRK15363        122 AIKALKAVV  130 (157)
T ss_pred             HHHHHHHHH
Confidence            555554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.04  E-value=0.00018  Score=59.24  Aligned_cols=128  Identities=9%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811          230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC  308 (400)
Q Consensus       230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (400)
                      |..++...-+.+..+.|..+|.+..+.+ ..+..+|...+.. +...++.+.|..+|+...+. .+.+...|...+..+.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            3334444444444555555555544322 2222333333222 12233444455555554443 2334444445555555


Q ss_pred             hcCCHHHHHHHHhhhhhCCCCcCH---HHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          309 KNKEVEEALSLYNELPFKGIKPTV---VTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       309 ~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      ..|+.+.|..+|++.... +.++.   ..|..++..=.+.|+.+.+.++.+++.+
T Consensus        82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555555555554433 11111   2444444444445555555555554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.04  E-value=2e-05  Score=51.70  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=38.7

Q ss_pred             cCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811           24 NKHYDTVLSLFKRLNSIGLF-PDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA  102 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  102 (400)
                      +|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566666666665554311 1233344455556666666666666655 22221 122333334555556666666655


Q ss_pred             HHHH
Q 015811          103 LFTK  106 (400)
Q Consensus       103 ~~~~  106 (400)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.03  E-value=8.5e-06  Score=41.63  Aligned_cols=30  Identities=20%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIG   41 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g   41 (400)
                      .+|+.++++|.+.|++++|.++|++|.+.|
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            367788888888888888888888887765

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.03  E-value=0.00039  Score=62.20  Aligned_cols=139  Identities=12%  Similarity=-0.006  Sum_probs=101.0

Q ss_pred             CCCCCCcchHHHHHHHHHcc-----CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--------ChhhHHHHHHH
Q 015811            5 HPSPPPVSSFNILLGCLAKN-----KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG--------QVSLGFVIFGR   71 (400)
Q Consensus         5 ~~~p~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~   71 (400)
                      ...|.|..+|...+++....     ++...|+.+|++..+.. +-....|..+..++....        +...+.+..++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            34568889999999886542     23779999999999875 334555555544443321        22344444444


Q ss_pred             HHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           72 ILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        72 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      .... ..+.+...|..+.-.....|++++|...+++..+.  .|+...|..+...+...|+.++|.+.+++....+
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3332 12335577887777777889999999999999988  4688899999999999999999999999998865

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.0058  Score=51.18  Aligned_cols=89  Identities=16%  Similarity=-0.005  Sum_probs=52.2

Q ss_pred             HHhcCCchhHHHHHHHHHhCC---CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811          237 LCKNGKMDNASRLLDLMVQCD---VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV  313 (400)
Q Consensus       237 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  313 (400)
                      ..+.|.+..|.+.|.+.+..+   ..++...|.....+..+.|+..+|+.--++..+.+ +.-...|..-..++...++|
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKW  337 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHH
Confidence            346677777777777766542   33445556666666667777777777666666542 11122233333455566677


Q ss_pred             HHHHHHHhhhhhC
Q 015811          314 EEALSLYNELPFK  326 (400)
Q Consensus       314 ~~A~~~~~~~~~~  326 (400)
                      ++|.+-+++..+.
T Consensus       338 e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  338 EEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777777766554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.01  E-value=2.3e-05  Score=51.33  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             cCChhhHHHHHHHHHhccCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811           59 MGQVSLGFVIFGRILRSCFA-PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        59 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                      .|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++...|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58899999999999997542 2455666689999999999999999988 4332 2344555566899999999999999


Q ss_pred             HHHHH
Q 015811          138 LFKEM  142 (400)
Q Consensus       138 ~~~~~  142 (400)
                      .|++.
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99863

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.96  E-value=0.00038  Score=57.33  Aligned_cols=133  Identities=8%  Similarity=0.022  Sum_probs=79.4

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG-LCAESRIVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      .+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. .+.+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356666777667667777777777776542 2234444444444 22345556677777776655 24566666777777


Q ss_pred             HHhcCChHHHHHHHHHHHcCCCcccccccC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 015811          126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKP-NTVTYSIIIDGLCKEGFVDKAKELFLQMKYE  186 (400)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  186 (400)
                      +...++.+.|..+|++....-.     ... ....|..++..=.+.|+.+.+.++.+.+.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~-----~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLP-----KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSS-----CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777777777777765421     011 2246777777777777777777777776654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.95  E-value=0.0039  Score=50.12  Aligned_cols=58  Identities=9%  Similarity=-0.009  Sum_probs=42.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYE--NLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV  219 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  219 (400)
                      .+.+.|.+.|.+..|..-++.+.+.  +.+........+..+|...|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4566678888888888888887764  555566777777888888888888877766554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.92  E-value=0.00045  Score=52.28  Aligned_cols=109  Identities=10%  Similarity=0.008  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHHHHHhcCCHHHHHHH
Q 015811           27 YDTVLSLFKRLN-SIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIKGLCAESRIVEAAAL  103 (400)
Q Consensus        27 ~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~  103 (400)
                      +..+...+..+. ..+..-....|..+...+...|++++|...|+........+  ...++..+..++...|++++|...
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444444555543 22222234555666666666777777777777776543222  224566667777777777777777


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHH-------hcCChHHHH
Q 015811          104 FTKLKAFGCEPNVITYNTLINGLC-------RTGHTIVAL  136 (400)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~  136 (400)
                      +++..... +....++..+...+.       ..|++++|+
T Consensus        95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033         95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence            77766542 223344445555554       566655333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.91  E-value=0.0018  Score=53.59  Aligned_cols=171  Identities=13%  Similarity=0.088  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--h
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFA-----PNVVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCEPN--V  116 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~  116 (400)
                      .|......|...+++++|.+.|.+.......     .-...|.....+|.+. ++++|.+.+++..+.    | .++  .
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA  114 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA  114 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence            4555556666677777777777666432111     1122344444444333 666776666665431    2 111  1


Q ss_pred             hhHHHHHHHHHhc-CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----
Q 015811          117 ITYNTLINGLCRT-GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-----  190 (400)
Q Consensus       117 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----  190 (400)
                      .++..+...|... |++++|++.|++..+.....+. ...-...+..+...+.+.|++++|.++|++........     
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            2344445555555 6666666666665442100000 01112334455555666666666666666655432111     


Q ss_pred             ChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          191 NVV-TYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       191 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      +.. .+...+-++...|+...|...+++....
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            111 1222233444455666666666555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.90  E-value=0.00048  Score=52.15  Aligned_cols=62  Identities=11%  Similarity=0.039  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEP--NVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      +..+...+...|++++|...|++.......+  ...++..+...+...|++++|+..+++....
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444444444455555555555444331111  1123444444444555555555555444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.87  E-value=0.00087  Score=50.92  Aligned_cols=82  Identities=12%  Similarity=0.103  Sum_probs=37.4

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHhCCCCCc--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811          231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPN--AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC  308 (400)
Q Consensus       231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (400)
                      ..+...+...|++++|...+++..+....+.  ...+..+...+...|++++|...+.+..+.. +.+...+..+..++.
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~  117 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3334444444555555555544443221111  2344455555555555555555555555442 223444444445555


Q ss_pred             hcCCH
Q 015811          309 KNKEV  313 (400)
Q Consensus       309 ~~~~~  313 (400)
                      ..|+.
T Consensus       118 ~~g~~  122 (172)
T PRK02603        118 KRGEK  122 (172)
T ss_pred             HcCCh
Confidence            54443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.87  E-value=0.0015  Score=45.57  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIK   89 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~   89 (400)
                      .-.+..++-..|+.++|+.+|++....|....  ...+..+...+...|++++|..+++......+.+  +......+.-
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            33556777888999999999999998886544  3567778888999999999999999988753220  2223333445


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC  127 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  127 (400)
                      ++...|+.++|.+.+-....    ++...|..-|..|.
T Consensus        84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            67788999999988876653    23335555555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.86  E-value=0.00014  Score=45.42  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHH
Q 015811          274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTL  338 (400)
Q Consensus       274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  338 (400)
                      ..|++++|..+++.+.+.. +.+...+..+..+|.+.|++++|..+++++...  .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            4677777777777776664 446666667777777777777777777777765  4554444433

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.86  E-value=0.0094  Score=47.96  Aligned_cols=179  Identities=10%  Similarity=0.017  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT---YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNE  236 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  236 (400)
                      +-.....+...|++++|.+.|+.+...... +...   .-.+..++.+.+++++|...+++..+........-+...+.+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            334455566788899999998888875322 1222   235667778888899999888888876322222233333333


Q ss_pred             HHh--cC---------------C---chhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 015811          237 LCK--NG---------------K---MDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD  296 (400)
Q Consensus       237 ~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  296 (400)
                      .+.  .+               +   ...|...|+.+++               -|-...-..+|...+..+...    -
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----l  174 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----L  174 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----H
Confidence            321  11               1   1122233333333               222222233333333333221    0


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhhhhC--CCCcCHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015811          297 DFSYNILINGYCKNKEVEEALSLYNELPFK--GIKPTVVTYNTLFHGLFEIRQAERALKLFVEM  358 (400)
Q Consensus       297 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  358 (400)
                      ...--.+...|.+.|.+..|..-++.+++.  +.+........++.+|...|..++|.+....+
T Consensus       175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            001114556677777777777777776654  22333445556666777777777776665544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.0015  Score=52.43  Aligned_cols=100  Identities=9%  Similarity=0.043  Sum_probs=46.9

Q ss_pred             CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhcCCCCCHHHHH
Q 015811          225 PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG---KINRVKELFVSMESMGCKHDDFSYN  301 (400)
Q Consensus       225 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~  301 (400)
                      -|...|..|..+|...|+.+.|..-|....+.. ++++..+..+..++..+.   ...++..+++++...+ +-|.....
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            344555555555555555555555555554442 333444444443332221   2334455555555443 33444444


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          302 ILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       302 ~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      .|...+...|++.+|...|+.|.+.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc
Confidence            4445555555555555555555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.00025  Score=56.50  Aligned_cols=100  Identities=21%  Similarity=0.205  Sum_probs=82.0

Q ss_pred             HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811          236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE  315 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  315 (400)
                      -..+.+++.+|+..|...++.. +-|...|..=..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            4567889999999999999875 5677778888889999999999998888888875 4457789999999999999999


Q ss_pred             HHHHHhhhhhCCCCcCHHHHHHHH
Q 015811          316 ALSLYNELPFKGIKPTVVTYNTLF  339 (400)
Q Consensus       316 A~~~~~~~~~~~~~p~~~~~~~l~  339 (400)
                      |.+.|++.++.  .|+..+|..=+
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHH
Confidence            99999988875  67777665433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.0015  Score=52.49  Aligned_cols=113  Identities=11%  Similarity=0.035  Sum_probs=83.4

Q ss_pred             CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHhhhhhCCCCcCHHHH
Q 015811          259 RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK---EVEEALSLYNELPFKGIKPTVVTY  335 (400)
Q Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~  335 (400)
                      +-|...|..|...|...|+.+.|..-|.+..+.. ++++..+..+..++....   ...++..+|+++...+. -|+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence            6678888889999999999999999998888865 567777777777765433   36778888888887642 255666


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811          336 NTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID  375 (400)
Q Consensus       336 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  375 (400)
                      ..|...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            666778888899999999999988753  33334444444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.84  E-value=2.7e-05  Score=39.70  Aligned_cols=29  Identities=41%  Similarity=0.642  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGND  362 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  362 (400)
                      +|+.++++|.+.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.80  E-value=9.5e-05  Score=46.14  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=33.6

Q ss_pred             HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      .+.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566677777777766553 335666666666677777777777776666665

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.80  E-value=0.0018  Score=58.03  Aligned_cols=143  Identities=10%  Similarity=0.027  Sum_probs=83.8

Q ss_pred             CCCCcccHHHHHHHHHhc--C---CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC--------CChHHHHHHHHHHH
Q 015811          223 VQPNVVSSNVIMNELCKN--G---KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT--------GKINRVKELFVSME  289 (400)
Q Consensus       223 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~  289 (400)
                      .+.+...|...+++....  +   +...|..+|++..+.+ +-....+..+..++...        .+...+.+...+..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            345556666666654332  2   2556777777777754 22334444433333211        11223333333333


Q ss_pred             hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh
Q 015811          290 SM-GCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC  368 (400)
Q Consensus       290 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  368 (400)
                      .. ..+.++..|..+.......|++++|...++++...  .|+...|..+...+...|+.++|...+++...  +.|...
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence            32 12345566776766666678888888888887776  46777777777788888888888888887765  344444


Q ss_pred             hH
Q 015811          369 TY  370 (400)
Q Consensus       369 ~~  370 (400)
                      +|
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            43

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.00039  Score=55.39  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811          200 HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN  279 (400)
Q Consensus       200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  279 (400)
                      .-+.+.+++.+|+..|.+.++.. +-|...|..-..+|++.|.++.|++=.+..+..+ +-...+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence            34677899999999999999874 4577778888999999999999999999888865 445789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHH
Q 015811          280 RVKELFVSMESMGCKHDDFSYN  301 (400)
Q Consensus       280 ~a~~~~~~~~~~~~~~~~~~~~  301 (400)
                      +|.+.|++.++..  |+-.+|-
T Consensus       167 ~A~~aykKaLeld--P~Ne~~K  186 (304)
T KOG0553|consen  167 EAIEAYKKALELD--PDNESYK  186 (304)
T ss_pred             HHHHHHHhhhccC--CCcHHHH
Confidence            9999999999874  5554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.77  E-value=0.0015  Score=54.14  Aligned_cols=130  Identities=11%  Similarity=0.096  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-----CcHH
Q 015811          195 YTSLIHGFCHA-NDWNEAKGLLIEMVDQ----GVQ-PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-----PNAF  263 (400)
Q Consensus       195 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~  263 (400)
                      +..+...|... |+++.|.+.|++..+.    +.+ .-..++..+...+.+.|++++|.++|+++......     .+..
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~  196 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK  196 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence            33344455555 6677777766665532    100 01233455556667777777777777666543211     1111


Q ss_pred             -HHHHHHHHHHcCCChHHHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHh--cCCHHHHHHHHhhhh
Q 015811          264 -TYNTLMDGFCLTGKINRVKELFVSMESMG--CKHD--DFSYNILINGYCK--NKEVEEALSLYNELP  324 (400)
Q Consensus       264 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~  324 (400)
                       .+-..+-++...||+..|...+++.....  ...+  ......|+.++-.  ...++.|..-|+.+.
T Consensus       197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence             22223334455667777777777665432  1111  2344455555543  233555555555554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.76  E-value=0.0084  Score=44.46  Aligned_cols=101  Identities=12%  Similarity=0.085  Sum_probs=43.9

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh
Q 015811          114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPNV  192 (400)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~  192 (400)
                      |++..-..|..++.+.|+..+|...|.+....-      +.-|....-.+.++....+++..|...++++.+.+. ..+.
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p  160 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP  160 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence            344444444444444555555555554444433      344444444444444444555555444444443310 0011


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          193 VTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      .+...+.+.+...|.+.+|+.-|+....
T Consensus       161 d~~Ll~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         161 DGHLLFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             CchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            2223334444444455545554444444

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.76  E-value=0.0012  Score=50.36  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCcccHHHHHHHHHhc-----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHH
Q 015811          225 PNVVSSNVIMNELCKN-----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFS  299 (400)
Q Consensus       225 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  299 (400)
                      .+..+|..++..|.+.     |..+-....+..|.+.|+.-|..+|+.|+..+=+ |.+-               |... 
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~-  107 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF-  107 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-
Confidence            3555666666665433     4444455555666666666666666666665543 2211               1100 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc
Q 015811          300 YNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR  346 (400)
Q Consensus       300 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  346 (400)
                      +..+-.-  .-.+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus       108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            0000000  11245668889999999999999999999988885544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.73  E-value=0.00099  Score=50.76  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             CCcHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811          259 RPNAFTYNTLMDGFCLT-----GKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV  333 (400)
Q Consensus       259 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  333 (400)
                      ..+..+|..++..|.+.     |..+=....++.|.+.|+..|..+|+.|++.+=+ |.+- -..+|             
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f-------------  108 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF-------------  108 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH-------------
Confidence            34556666666666433     4455555556666666666666666666665543 2211 01111             


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcc
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQV  383 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  383 (400)
                        ......|  -.+.+-|++++++|...|+-||..++..|++.+.+.+..
T Consensus       109 --Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  109 --QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             --HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence              1111111  234677999999999999999999999999999877643

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.015  Score=48.80  Aligned_cols=273  Identities=14%  Similarity=0.048  Sum_probs=149.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      ..+.+..++..|+..+...++.. +.+..-|..-+..+...+++++|+--.+.-.+...       -......-.-+++.
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-------~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-------GFSKGQLREGQCHL  128 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCC-------Cccccccchhhhhh
Confidence            34445556666666666666654 33344444455555555666665555444433221       11111112222222


Q ss_pred             hcCChHHHHHHH---------------HHHHHcCC-CCChHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH
Q 015811          169 KEGFVDKAKELF---------------LQMKYENL-NPNVVTYTSL-IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN  231 (400)
Q Consensus       169 ~~~~~~~a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  231 (400)
                      ..++..+|.+.+               +....... +|.-.++..+ ..++.-.++.++|.+.--..++..   ....+.
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~a  205 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEA  205 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHH
Confidence            222222222222               11111111 1222333333 234556688888887777666653   112223


Q ss_pred             HHHH--HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH-------------HHHHHHcCCChHHHHHHHHHHHhcC---C
Q 015811          232 VIMN--ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT-------------LMDGFCLTGKINRVKELFVSMESMG---C  293 (400)
Q Consensus       232 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~---~  293 (400)
                      ..++  ++--.++.+.+...|.+.++.+  |+...-..             =..-..+.|++..|.+.|.+.+..+   .
T Consensus       206 l~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~  283 (486)
T KOG0550|consen  206 LYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK  283 (486)
T ss_pred             HHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence            3332  3445667788888888777653  33222111             1223467899999999999998653   4


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHH---HHHhccchHHHHHHHHHHHhhCCCCC-Chhh
Q 015811          294 KHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLF---HGLFEIRQAERALKLFVEMQGNDVAA-DTCT  369 (400)
Q Consensus       294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~  369 (400)
                      .|+...|........+.|+.++|+.--++....    |......++   .++...++|++|.+-+++..+....+ ...+
T Consensus       284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~  359 (486)
T KOG0550|consen  284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRT  359 (486)
T ss_pred             chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            566677877888888999999999998888754    544433333   35667889999999998876543222 2334


Q ss_pred             HHHHHHHhh
Q 015811          370 YRTFIDGLC  378 (400)
Q Consensus       370 ~~~l~~~~~  378 (400)
                      +.....++-
T Consensus       360 l~~A~~aLk  368 (486)
T KOG0550|consen  360 LREAQLALK  368 (486)
T ss_pred             HHHHHHHHH
Confidence            444443443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.72  E-value=0.00012  Score=45.81  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=29.9

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHh
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILR   74 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~   74 (400)
                      .+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            344445555555555555555555554443 223444444445555554 35555555544443

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.70  E-value=0.00021  Score=44.09  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      ...+.+.|++++|++.|+.+.+.. +-+...+..+..++...|++++|...|+.+++.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344555555555555555555543 224455555555555555555555555555543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.69  E-value=0.0045  Score=43.23  Aligned_cols=56  Identities=23%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPN--VITYNTLINGLCRTGHTIVALNLFKEMTN  144 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  144 (400)
                      .++-..|+.++|+.+|++....|+...  ...+..+...+...|++++|+.++++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344445555555555555555543322  22344444555555555555555555544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.67  E-value=0.00025  Score=43.77  Aligned_cols=50  Identities=14%  Similarity=0.173  Sum_probs=18.9

Q ss_pred             HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811          273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL  323 (400)
Q Consensus       273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  323 (400)
                      ...|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++
T Consensus         8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33344444444444443332 223333333334444444444444444433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.65  E-value=0.02  Score=51.02  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=23.6

Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811          102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM  142 (400)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  142 (400)
                      --++++.+.|-.|+...   +...++-.|.+.+|-++|.+-
T Consensus       621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence            34556666665565543   445566677888888777653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.62  E-value=0.014  Score=43.33  Aligned_cols=155  Identities=12%  Similarity=0.005  Sum_probs=91.3

Q ss_pred             HHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811           54 NCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI  133 (400)
Q Consensus        54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  133 (400)
                      .+..+.=+.+....-..+-..  ..|++..-..|..++.+.|+..+|...|++...--...|......+.++....+++.
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A  141 (251)
T COG4700          64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA  141 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence            333444444444333333222  245666666677777777777777777777765433456666666777777777777


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG  213 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  213 (400)
                      .|...++.+.+.++     -..++++.-.+.+.+...|.+.+|...|+.....-  |+...-......+.+.|+.+++..
T Consensus       142 ~a~~tLe~l~e~~p-----a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         142 AAQQTLEDLMEYNP-----AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHHHhhcCC-----ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence            77777777766542     12234455566677777777777777777777653  343333333344455665555544


Q ss_pred             HHHH
Q 015811          214 LLIE  217 (400)
Q Consensus       214 ~~~~  217 (400)
                      -+.+
T Consensus       215 q~~~  218 (251)
T COG4700         215 QYVA  218 (251)
T ss_pred             HHHH
Confidence            3333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.57  E-value=0.00076  Score=42.14  Aligned_cols=65  Identities=14%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAF  110 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~  110 (400)
                      ++.+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            45566777777777777777777777777764 225666777777777777 577777777776654

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.53  E-value=0.001  Score=55.46  Aligned_cols=132  Identities=13%  Similarity=0.043  Sum_probs=86.3

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCcccHHHHHHHHHhcCCchhHHHHHHHHHh----CC-CCCcH
Q 015811          193 VTYTSLIHGFCHANDWNEAKGLLIEMVD----QGV-QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ----CD-VRPNA  262 (400)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~  262 (400)
                      ..|..|...|.-.|+++.|+...+.-+.    -|- ......+..+..++.-.|+++.|.+.|+....    .| -....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            4566777777778889988876654322    121 11234566777888888999999888876532    22 12234


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESM-----GCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      ...-+|...|.-..+++.|+.++.+-...     +..-....+-+|..+|...|..++|+.+.+.-.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45667777787778888888887764321     111234566778888888888888887776543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.53  E-value=0.04  Score=46.17  Aligned_cols=297  Identities=14%  Similarity=0.153  Sum_probs=163.8

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      +|..+.......|+.+-|..+++.      .|+..-   =+..+.+.|+.+.|   +.+..+.| .||. +|..|+..--
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~   67 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR   67 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence            577788888888888888876542      555532   24455667777776   44555654 3333 4455554433


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF  172 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (400)
                      ... ..   +++ .+...  .|..   ..+...|++..+.+.-..+|.+-.+          ........+-.++ +..+
T Consensus        68 ~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~----------~~~~a~~~l~~~~-~~~~  126 (319)
T PF04840_consen   68 KLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDR----------FQELANLHLQEAL-SQKD  126 (319)
T ss_pred             hCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcch----------HHHHHHHHHHHHH-hCCC
Confidence            222 21   233 33322  2332   2345566666666665555543211          0111111222222 2244


Q ss_pred             hHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHHHHHH---HHHH-CCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          173 VDKAKELFLQMKYE-NLNPNVVTYTSLIHGFCHANDWNEAKGLLI---EMVD-QGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       173 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      .+.-...+....+. +-..+......++         ++-.++++   .+.. .+......+.+..+.-+...|+...|.
T Consensus       127 ~~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~  197 (319)
T PF04840_consen  127 VEEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAE  197 (319)
T ss_pred             hHHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHH
Confidence            44444444443322 0011111111111         11112221   1111 122223345666677788888888888


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG  327 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  327 (400)
                      ++-.+.   . -|+...|..-+.+++..++|++...+...      +-++.-|...+.+|.+.|+..+|..++.++.   
T Consensus       198 kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~---  264 (319)
T PF04840_consen  198 KLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP---  264 (319)
T ss_pred             HHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence            776655   2 47888888889999999999887766432      2245778889999999999999998887732   


Q ss_pred             CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811          328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV  379 (400)
Q Consensus       328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (400)
                         +    ..-+..|.+.|++.+|.+.--+..      |...+..+...+..
T Consensus       265 ---~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~  303 (319)
T PF04840_consen  265 ---D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG  303 (319)
T ss_pred             ---h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence               1    345667888999999988765543      44455555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.53  E-value=0.026  Score=44.12  Aligned_cols=61  Identities=15%  Similarity=0.079  Sum_probs=39.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMKYENLN--PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      -.....+...|++.+|.+.|+.+......  --......++.++.+.|+++.|...++.+++.
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33445566778888888888888765211  12244556677777888888888888887765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.52  E-value=0.0022  Score=53.58  Aligned_cols=132  Identities=16%  Similarity=0.069  Sum_probs=89.7

Q ss_pred             ccHHHHHHHHHhcCCchhHHHHHHHH----HhCCCC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHH----hcCC-CCCH
Q 015811          228 VSSNVIMNELCKNGKMDNASRLLDLM----VQCDVR-PNAFTYNTLMDGFCLTGKINRVKELFVSME----SMGC-KHDD  297 (400)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~  297 (400)
                      ..|..+...|.-.|+++.|+...+.-    .+.|-+ .....+..+..++.-.|+++.|.+.|+...    +.|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            44555666667788999988765432    222211 224567788889999999999999888753    3331 1123


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhhhhC-----CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          298 FSYNILINGYCKNKEVEEALSLYNELPFK-----GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       298 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      ...-+|...|.-..++++|+.++.+-...     +..-....+.+|..++...|..++|+.+.+.-+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34456777788888899999887763321     123356678889999999999999998877655

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.51  E-value=0.016  Score=45.38  Aligned_cols=62  Identities=13%  Similarity=0.129  Sum_probs=37.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      +-.....+.+.|++.+|+..|+.+.....  +--......++.++.+.|+++.|...++..++.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33445556667777777777777765421  112345556666777777777777777777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.49  E-value=0.0042  Score=50.38  Aligned_cols=96  Identities=10%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNVVTFTS   86 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~   86 (400)
                      .|...+..+.+.|++++|+..|+.+.+..  |+    ..++..+..+|...|+++.|...|+.+.+..+.  .....+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444444455566666666666666542  22    245556666666666666666666666653211  12333444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +..++...|+.++|..+|+.+.+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455555666666666666666654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.43  E-value=0.034  Score=47.12  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=40.1

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHh---cCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYSILINCFCK---MGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      .++-+|....+++..+++.+.+...-   +..+...-.....++.+   .|+.++|++++..++.....++..+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34445666666666666666665431   11122222333444455   5666666666666444444555666655555


Q ss_pred             HH
Q 015811           90 GL   91 (400)
Q Consensus        90 ~~   91 (400)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            44

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.42  E-value=0.0096  Score=43.80  Aligned_cols=108  Identities=21%  Similarity=0.370  Sum_probs=64.4

Q ss_pred             cchHHHHHH---HHHccCChhHHHHHHHHHHhC--C-CCCC------------------HHhHHHHHHHHHhcCChhhHH
Q 015811           11 VSSFNILLG---CLAKNKHYDTVLSLFKRLNSI--G-LFPD------------------LYTYSILINCFCKMGQVSLGF   66 (400)
Q Consensus        11 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~--g-~~~~------------------~~~~~~l~~~~~~~~~~~~a~   66 (400)
                      +..|..++.   .....++...+.+.++++...  | +-|+                  ..+...++..+...|+++.|.
T Consensus         3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~   82 (146)
T PF03704_consen    3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL   82 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            344555533   335677888999988888764  2 1111                  112334445556678888888


Q ss_pred             HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhhH
Q 015811           67 VIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK-----AFGCEPNVITY  119 (400)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  119 (400)
                      .+.+.+.... +.+...|..+|.++...|+...|.+.|+++.     +.|+.|+..+-
T Consensus        83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            8888887764 3467778888888888888888888877764     34777776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.38  E-value=0.067  Score=48.33  Aligned_cols=179  Identities=11%  Similarity=-0.003  Sum_probs=104.7

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-cCCc--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-CFAP--------NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE  113 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  113 (400)
                      .|.+..|..+.......-.++.|...|-+.... |++.        +...-.+=+.+  --|.+++|+++|-++-+..  
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence            578888888888777777777777766655432 2210        11111111222  2477888888887765442  


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 015811          114 PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV  193 (400)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  193 (400)
                             ..+..+.+.|++-...++++.--....     -..-...|+.+...+.....|++|.+.|..-..        
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------  824 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------  824 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence                   245566677777766666554221110     011235677888888888888888887765432        


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 015811          194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLD  251 (400)
Q Consensus       194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  251 (400)
                       ....+.++.+..++++.+.+...+     +.+....-.+..++.+.|.-++|.+.+-
T Consensus       825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence             123456666666666655444333     4455566666677777777666665553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.36  E-value=0.0086  Score=51.41  Aligned_cols=67  Identities=13%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-H---HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD-L---YTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      .|.+...|+.+..+|.+.|++++|+..|++.++..  |+ .   .+|..+..+|...|+.++|++.+++.++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46678899999999999999999999999988764  44 3   35899999999999999999999999885

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.33  E-value=0.0019  Score=40.87  Aligned_cols=57  Identities=14%  Similarity=0.240  Sum_probs=37.3

Q ss_pred             HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811           19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC   76 (400)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   76 (400)
                      ..|.+++++++|+++++.+...+ +.+...+.....++.+.|++++|.+.++...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            45566677777777777766654 3455666666666677777777777777766653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.33  E-value=0.0084  Score=48.67  Aligned_cols=91  Identities=10%  Similarity=-0.019  Sum_probs=40.0

Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHh
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL--NPNVVTYTSLIHGFCH  204 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~  204 (400)
                      .+.|++++|+..|+.+....+..    .-....+..+..+|...|++++|...|+.+.+...  +.....+..+...+..
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~  229 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD  229 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence            34455555555555555443110    01123344444555555555555555555543310  0112223333444445


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 015811          205 ANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       205 ~~~~~~a~~~~~~~~~~  221 (400)
                      .|+.++|..+++.+.+.
T Consensus       230 ~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        230 KGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            55555555555555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.31  E-value=0.0019  Score=40.81  Aligned_cols=54  Identities=11%  Similarity=-0.028  Sum_probs=26.1

Q ss_pred             HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          272 FCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       272 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      |.+.++++.|..+++.+...+ +.+...+.....++...|++++|...++...+.
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444455555555555554443 334444444445555555555555555554443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.061  Score=42.52  Aligned_cols=139  Identities=6%  Similarity=-0.003  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHH-----HH
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNT-----LM  269 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~  269 (400)
                      .+.++..+.-.+.+.-....+.++++...+.++.....+.+.-.+.||.+.|...|+...+..-..+..+++.     ..
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3455566666677777777788877776566777777777777888888888888876655432333333332     33


Q ss_pred             HHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHH
Q 015811          270 DGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYN  336 (400)
Q Consensus       270 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~  336 (400)
                      ..|.-++++..|...+.++...+ +.|+...|.-.-+..-.|+...|.+.++.|.+.  .|...+-+
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            34556677777777777777665 445555555555555667888888888888765  44444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.25  E-value=0.093  Score=44.06  Aligned_cols=293  Identities=12%  Similarity=0.072  Sum_probs=177.9

Q ss_pred             HHHHHHHHH--ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhhHHHHHHHHHhccCCccHHH--HHHH
Q 015811           14 FNILLGCLA--KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF--CKMGQVSLGFVIFGRILRSCFAPNVVT--FTSL   87 (400)
Q Consensus        14 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l   87 (400)
                      |..|-.++.  -.|+-..|.++-.+..+. +..|......++.+-  .-.|+++.|.+-|+.|...   |....  ...|
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL  160 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL  160 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence            444444443  356777777776665422 244555666666543  4579999999999999873   33222  2334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh--HHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT--YSIIID  165 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~  165 (400)
                      .-..-+.|+.+.|.++-+..-... +.-...+...+...+..|+++.|+++++.-.....     +.++..-  -..|+.
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLLt  234 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLLT  234 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHH
Confidence            444457899999998888877653 33456788899999999999999999998765432     2333221  112221


Q ss_pred             HH---HhcCChHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811          166 GL---CKEGFVDKAKELFLQMKYENLNPNVV-TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       166 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (400)
                      +-   .-..+...|...-.+..+  +.||.. .-..-..++.+.|+..++-.+++.+-+....|+      +...|....
T Consensus       235 AkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar  306 (531)
T COG3898         235 AKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRAR  306 (531)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhc
Confidence            11   112345555555544443  345432 223345667788888888888888887643333      223343333


Q ss_pred             CchhHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 015811          242 KMDNASRLLDLMVQC-DVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC-KNKEVEEALS  318 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~  318 (400)
                      .-+.+..-++...+. ..+| +......+..+-...|++..|..--+...+.  .|....|..|.+.-. ..|+-.++..
T Consensus       307 ~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~  384 (531)
T COG3898         307 SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQ  384 (531)
T ss_pred             CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHH
Confidence            333444444333221 1223 3455556667777788888777776666654  577777777766654 4488888888


Q ss_pred             HHhhhhhC
Q 015811          319 LYNELPFK  326 (400)
Q Consensus       319 ~~~~~~~~  326 (400)
                      ++.+..+.
T Consensus       385 wlAqav~A  392 (531)
T COG3898         385 WLAQAVKA  392 (531)
T ss_pred             HHHHHhcC
Confidence            88777654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.067  Score=42.28  Aligned_cols=141  Identities=9%  Similarity=0.018  Sum_probs=104.9

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH----
Q 015811          158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI----  233 (400)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----  233 (400)
                      ...+.++.++.-.|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-..+..+.+.+    
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            4566778888888999999999999998766667788888999999999999999999988765434444444443    


Q ss_pred             -HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH
Q 015811          234 -MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYN  301 (400)
Q Consensus       234 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  301 (400)
                       ...|.-++++..|...+.++...+ +.++...|.-.-+....|+..+|.+.++.+.+..  |...+-+
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e  323 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE  323 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence             345666788888888888888765 4455555555555556789999999999998864  4444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.23  E-value=0.097  Score=43.95  Aligned_cols=124  Identities=11%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811          193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGF  272 (400)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  272 (400)
                      .+.+.-+.-+...|+...|.++-.+..    .|+...|...+.+++..++|++...+-..      +-++.-|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            345555667778888888888766652    46888889999999999999987775432      22457788889999


Q ss_pred             HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811          273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL  342 (400)
Q Consensus       273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  342 (400)
                      ...|+..+|..+..++     +     +..-+..|.+.|++.+|.+.--+..      |...+..+...+
T Consensus       248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~  301 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRC  301 (319)
T ss_pred             HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHC
Confidence            9999999998888762     2     2456788899999999987755443      444444444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.22  E-value=0.004  Score=45.86  Aligned_cols=70  Identities=20%  Similarity=0.331  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-----CCCCcCHHH
Q 015811          264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-----KGIKPTVVT  334 (400)
Q Consensus       264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~  334 (400)
                      ....++..+...|+++.|..+.+.+.... |.+...|..++.+|...|+...|.+.|+++..     .|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            33444555555666666666666666554 44555666666666666666666666665532     255555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.20  E-value=0.1  Score=43.78  Aligned_cols=286  Identities=14%  Similarity=0.126  Sum_probs=185.9

Q ss_pred             hcCChhhHHHHHHHHHhccCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChH
Q 015811           58 KMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG--LCAESRIVEAAALFTKLKAFGCEPNVIT--YNTLINGLCRTGHTI  133 (400)
Q Consensus        58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~  133 (400)
                      ..|+-..|.++-.+..+. +..|......++.+  -.-.|+++.|.+-|+.|...   |....  ...|.-..-+.|..+
T Consensus        96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence            356777777776655432 22344444455533  34579999999999999852   33322  233444445789999


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChH--hHHHHHHHHHh---cCC
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN-LNPNVV--TYTSLIHGFCH---AND  207 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~---~~~  207 (400)
                      .|..+-+..-...       +.-...+...+...+..|+|+.|+++++.-.... +.++..  .-..|+.+-..   ..+
T Consensus       172 aAr~yAe~Aa~~A-------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         172 AARHYAERAAEKA-------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             HHHHHHHHHHhhc-------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            9999888887764       4456788899999999999999999998876542 333432  22233332211   134


Q ss_pred             HHHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHH
Q 015811          208 WNEAKGLLIEMVDQGVQPNVVSS-NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFV  286 (400)
Q Consensus       208 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  286 (400)
                      ...|...-.+..+  +.||..-- ..-..++.+.|+..++-.+++.+-+....|+  ...  +..+.+.|+.  +.+-++
T Consensus       245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt--a~dRlk  316 (531)
T COG3898         245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT--ALDRLK  316 (531)
T ss_pred             hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--HHHHHH
Confidence            5555555544444  35554332 3345788999999999999999999765554  322  2234555553  333344


Q ss_pred             HHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH-hccchHHHHHHHHHHHhhCC
Q 015811          287 SME---SMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL-FEIRQAERALKLFVEMQGND  362 (400)
Q Consensus       287 ~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~  362 (400)
                      +..   ... +.+......+.++-...|++..|..--+.....  .|....|..|...- ...|+-.++...+.+.++..
T Consensus       317 Ra~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         317 RAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            332   222 345667777888889999999988877776654  67888888777754 45599999999998887643


Q ss_pred             CCC
Q 015811          363 VAA  365 (400)
Q Consensus       363 ~~~  365 (400)
                      -.|
T Consensus       394 rdP  396 (531)
T COG3898         394 RDP  396 (531)
T ss_pred             CCC
Confidence            333

>PRK15331 chaperone protein SicA; Provisional

Probab=97.12  E-value=0.043  Score=40.28  Aligned_cols=92  Identities=11%  Similarity=-0.044  Sum_probs=75.3

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015811           52 LINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH  131 (400)
Q Consensus        52 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  131 (400)
                      ...-+...|++++|..+|+-+.-.++. +...|..|..++-..+++++|...|......+ .-|+..+-....++...|+
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence            344456789999999999998886543 67778888899999999999999999887665 3466666678889999999


Q ss_pred             hHHHHHHHHHHHcC
Q 015811          132 TIVALNLFKEMTNG  145 (400)
Q Consensus       132 ~~~a~~~~~~~~~~  145 (400)
                      .+.|...|......
T Consensus       121 ~~~A~~~f~~a~~~  134 (165)
T PRK15331        121 AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988763

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.21  Score=45.64  Aligned_cols=345  Identities=12%  Similarity=0.105  Sum_probs=187.3

Q ss_pred             HccCChhHHHHHHHHH--------HhCCCCCCHHhHHH-----HHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811           22 AKNKHYDTVLSLFKRL--------NSIGLFPDLYTYSI-----LINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~--------~~~g~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      .+.-++++-+.+...+        ...|++.+..-|..     ++.-+...+.+..|.++-..+-..-.. ...+|....
T Consensus       400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa  478 (829)
T KOG2280|consen  400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWA  478 (829)
T ss_pred             cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHH
Confidence            3444555554444443        33466666655544     455566778888888887766432212 245666666


Q ss_pred             HHHHhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811           89 KGLCAESRI--VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG  166 (400)
Q Consensus        89 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (400)
                      .-+.+..+.  +++.+.+.+=...-. .+-..|..+.......|+.+-|..+++.=...+....  .-.+..-+...+.-
T Consensus       479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~--lLL~m~~~~~AL~k  555 (829)
T KOG2280|consen  479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVP--LLLKMKDSSLALKK  555 (829)
T ss_pred             HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhH--HHhccchHHHHHHH
Confidence            666665332  222222222222111 2345677777777788999999888875433321111  11233445666777


Q ss_pred             HHhcCChHHHHHHHHHHHHcC-----------CCCChHhHHHHHH--------HHHhcCCHHHHHHHH--HHHHHC-CCC
Q 015811          167 LCKEGFVDKAKELFLQMKYEN-----------LNPNVVTYTSLIH--------GFCHANDWNEAKGLL--IEMVDQ-GVQ  224 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~  224 (400)
                      +...|+.+-...++-.+.+.-           .+.....|.-+++        .+.+.++-.++...+  +...+. -+.
T Consensus       556 aies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~  635 (829)
T KOG2280|consen  556 AIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIE  635 (829)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhc
Confidence            778888888777776665431           1111122222222        011111111111111  110000 011


Q ss_pred             CCcccHHHHHHHHHhcCCchhHHHHH----------HHHH-hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 015811          225 PNVVSSNVIMNELCKNGKMDNASRLL----------DLMV-QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC  293 (400)
Q Consensus       225 ~~~~~~~~l~~~~~~~~~~~~a~~~~----------~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  293 (400)
                      +-..........+.+.....-..+..          +.+. +.+......+.+--+.-+...|+..+|.++-.+..    
T Consensus       636 ~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----  711 (829)
T KOG2280|consen  636 GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----  711 (829)
T ss_pred             ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence            11222333344444443322211111          1111 11222333445555666777888888888877665    


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHH
Q 015811          294 KHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTF  373 (400)
Q Consensus       294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  373 (400)
                      -||...|-.-+.+++..++|++-+++-+...      ++.-|..++.+|.+.|+.++|.+++-+...         +.-.
T Consensus       712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ek  776 (829)
T KOG2280|consen  712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEK  776 (829)
T ss_pred             CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHH
Confidence            5688888888889999999988777766544      244566788889999999999988865432         1156


Q ss_pred             HHHhhcCCcchhhHhh
Q 015811          374 IDGLCVRPQVRFTYAR  389 (400)
Q Consensus       374 ~~~~~~~g~~~~a~~~  389 (400)
                      ..+|.+.|++.+|...
T Consensus       777 v~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  777 VKAYLRVGDVKEAADL  792 (829)
T ss_pred             HHHHHHhccHHHHHHH
Confidence            7788888888887544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.09  E-value=0.025  Score=41.45  Aligned_cols=93  Identities=9%  Similarity=-0.089  Sum_probs=77.1

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES   95 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   95 (400)
                      .....+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|...|......+. -|+..+-....++...|
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence            44555678999999999999998776 44777788888888899999999999998877653 35555667789999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 015811           96 RIVEAAALFTKLKAF  110 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~  110 (400)
                      +.+.|...|+.....
T Consensus       120 ~~~~A~~~f~~a~~~  134 (165)
T PRK15331        120 KAAKARQCFELVNER  134 (165)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998873

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.98  E-value=0.022  Score=40.25  Aligned_cols=88  Identities=13%  Similarity=0.023  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHcCCC---------cccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 015811          117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNG---------EIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-  186 (400)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  186 (400)
                      .++..++.++++.|+.+....+++..-....         ..+....|+..+..+++.+|+..+++..|+++++...+. 
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            3444555555555555555555544322110         111125677777777777777778888888777776654 


Q ss_pred             CCCCChHhHHHHHHHHHh
Q 015811          187 NLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       187 ~~~~~~~~~~~l~~~~~~  204 (400)
                      +++.+..+|..|++-+..
T Consensus        83 ~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   83 PIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            555566777777765443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.96  E-value=0.0013  Score=42.31  Aligned_cols=68  Identities=18%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP-NTVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      .+++.+...|...|++++|+..|++..+.....+. -.| ...++..+..++...|++++|++.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            46777888888888888888888877654211110 122 256778888899999999999999988754

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.94  E-value=0.0036  Score=40.21  Aligned_cols=61  Identities=26%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhhhC----CC-CcC-HHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELPFK----GI-KPT-VVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      +++.+...|...|++++|+..+++..+.    |- .|+ ..++..+..++...|++++|++++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555554421    10 111 2344445555555666666666555543

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.094  Score=42.37  Aligned_cols=51  Identities=16%  Similarity=0.118  Sum_probs=24.2

Q ss_pred             HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811           57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      ...|++..|...|......... +...-..++.+|...|+.+.|..++..+.
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            4445555555555555443222 23334444455555555555555555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.94  E-value=0.025  Score=39.99  Aligned_cols=28  Identities=11%  Similarity=0.246  Sum_probs=21.0

Q ss_pred             cHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811          261 NAFTYNTLMDGFCLTGKINRVKELFVSM  288 (400)
Q Consensus       261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~  288 (400)
                      |..++..++.++++.|+.+....+++..
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~   28 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSV   28 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            4567778888888888888877777654

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.91  E-value=0.32  Score=44.31  Aligned_cols=274  Identities=18%  Similarity=0.157  Sum_probs=130.0

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhc-cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811           52 LINCFCKMGQVSLGFVIFGRILRS-CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG  130 (400)
Q Consensus        52 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  130 (400)
                      .+....+.|++-...++++.--.. .-..-...|+.+...++....+++|.+.|..-...         ...+.++.+..
T Consensus       766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le  836 (1189)
T KOG2041|consen  766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLE  836 (1189)
T ss_pred             hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHH
Confidence            344555666666555554431110 00112346777777777777778777777654311         23455555555


Q ss_pred             ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 015811          131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNE  210 (400)
Q Consensus       131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (400)
                      .+++-..+...+           +.+....-.+..++...|.-++|.+.|-+..   . |.     ..+..|...++|.+
T Consensus       837 ~f~~LE~la~~L-----------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~  896 (1189)
T KOG2041|consen  837 LFGELEVLARTL-----------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGE  896 (1189)
T ss_pred             hhhhHHHHHHhc-----------CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHH
Confidence            555554444432           3444555666666777777766666554322   1 11     23345555566666


Q ss_pred             HHHHHHHHHHCCC-----------CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC----CCCCcH----HHHHHHH-H
Q 015811          211 AKGLLIEMVDQGV-----------QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC----DVRPNA----FTYNTLM-D  270 (400)
Q Consensus       211 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l~-~  270 (400)
                      |.++-+...-..+           -.+.. ...-+..+.+.|..-.|.+++.+|.+.    +.++-.    .++.+++ .
T Consensus       897 avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE  975 (1189)
T KOG2041|consen  897 AVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE  975 (1189)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            6555443211000           00111 112344556666666666666555432    222111    1111111 1


Q ss_pred             HH----------HcCCChHHHHHHHHHHHhcC---C------CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC-CCCc
Q 015811          271 GF----------CLTGKINRVKELFVSMESMG---C------KHDDFSYNILINGYCKNKEVEEALSLYNELPFK-GIKP  330 (400)
Q Consensus       271 ~~----------~~~~~~~~a~~~~~~~~~~~---~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p  330 (400)
                      -+          -..|..++|.++++...-..   +      -.....|..|.+-....|.++.|+..--.+.+. .+-|
T Consensus       976 ~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp 1055 (1189)
T KOG2041|consen  976 NHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP 1055 (1189)
T ss_pred             HHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC
Confidence            11          12344455554443321110   0      012234445555566677788777654444432 4566


Q ss_pred             CHHHHHHHHHHHhccchHHHHHHHH
Q 015811          331 TVVTYNTLFHGLFEIRQAERALKLF  355 (400)
Q Consensus       331 ~~~~~~~l~~~~~~~~~~~~a~~~~  355 (400)
                      ....|+.+.-+.+....+...-+.|
T Consensus      1056 P~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1056 PAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            6777776655444444443333333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.85  E-value=0.25  Score=42.13  Aligned_cols=168  Identities=10%  Similarity=0.064  Sum_probs=96.8

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCcccH
Q 015811          157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYEN---LNPNVVTYTSLIHGFCH---ANDWNEAKGLLIEMVDQGVQPNVVSS  230 (400)
Q Consensus       157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~  230 (400)
                      ..+...++-.|....+++...++++.+....   +.-....-....-++.+   .|+.++|+.++..+......+++.++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            3444456666888899999999999988652   11122222334455566   78999999999996666667788888


Q ss_pred             HHHHHHHHh---------cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC-hH---HHHHHH---H-HHHhcC-
Q 015811          231 NVIMNELCK---------NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK-IN---RVKELF---V-SMESMG-  292 (400)
Q Consensus       231 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~-~~~~~~-  292 (400)
                      ..+.+.|-.         ....++|...|.+.-+..  |+...=-.++..+...|. .+   +..++-   . .+.+.| 
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            888776632         123566777776665532  443322222222222222 11   122222   1 111222 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          293 --CKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       293 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                        -..+-..+..++.++.-.|++++|.+..++|...
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              1233444566677777777777777777777755

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.72  E-value=0.43  Score=43.11  Aligned_cols=88  Identities=10%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-----------CHHhHHHHHHHHHhcCChh--hHHHHHHHHHhccCC
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP-----------DLYTYSILINCFCKMGQVS--LGFVIFGRILRSCFA   78 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-----------~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~   78 (400)
                      ..+.+-+..|...|.+++|.++-    -.|+..           +.-.++..=.+|.+-.+..  +...-++++.++|-.
T Consensus       557 vp~~~~m~q~Ieag~f~ea~~ia----clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~  632 (1081)
T KOG1538|consen  557 VPQSAPMYQYIERGLFKEAYQIA----CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET  632 (1081)
T ss_pred             ccccccchhhhhccchhhhhccc----ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence            44455556777888888886541    112211           2222333344555544433  334445667777777


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015811           79 PNVVTFTSLIKGLCAESRIVEAAALFTK  106 (400)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~  106 (400)
                      |+...   +...++-.|++.+|.++|.+
T Consensus       633 P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  633 PNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             chHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            77644   44566678888888888765

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.23  Score=38.99  Aligned_cols=26  Identities=8%  Similarity=-0.061  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRIL   73 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~   73 (400)
                      .|.....+|....++++|...+.+..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            44444555555666666666555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.61  E-value=0.4  Score=41.33  Aligned_cols=141  Identities=13%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCC------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH--HH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPD------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG--LC   92 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~   92 (400)
                      +-+++++.+|..+|.+....- ..+      ...-+.++++|.. ++.+.....+....+..  | ...|..+..+  +.
T Consensus        16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y   90 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY   90 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence            457889999999999986542 222      2233456666653 45666666666555542  2 2233334333  34


Q ss_pred             hcCCHHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChh
Q 015811           93 AESRIVEAAALFTKLKAF--GCEP------------NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV  158 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  158 (400)
                      +.+.+.+|.+.+......  +..+            |...-+..+.++...|++.++..+++++...--.  .....+..
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk--rE~~w~~d  168 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK--RECEWNSD  168 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh--hhhcccHH
Confidence            678888888888776654  2221            1122245677888899999999988888664300  00236777


Q ss_pred             hHHHHHHHHH
Q 015811          159 TYSIIIDGLC  168 (400)
Q Consensus       159 ~~~~l~~~~~  168 (400)
                      +|+.++-.+.
T Consensus       169 ~yd~~vlmls  178 (549)
T PF07079_consen  169 MYDRAVLMLS  178 (549)
T ss_pred             HHHHHHHHHh
Confidence            7777544443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.59  E-value=0.13  Score=36.89  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT   83 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   83 (400)
                      |..|....|+ -.....+.|++++|.+.|+.+..+-.  +-...+-..++.++.+.++++.|...+++.++..+.-...-
T Consensus         6 ~~~~~~~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen    6 PDKSPQELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             CCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            3333334443 44555678899999999998877521  22456677788888889999999999988888754433344


Q ss_pred             HHHHHHHHHhcC
Q 015811           84 FTSLIKGLCAES   95 (400)
Q Consensus        84 ~~~l~~~~~~~~   95 (400)
                      |...+.+++...
T Consensus        85 Ya~Y~~gL~~~~   96 (142)
T PF13512_consen   85 YAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544433

>PRK11906 transcriptional regulator; Provisional

Probab=96.59  E-value=0.23  Score=43.16  Aligned_cols=79  Identities=16%  Similarity=0.033  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      +|.++-+...+.+ +.|+.....+..+....++++.|...|++....+ +.....|......+.-.|+.++|...+++..
T Consensus       322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3444444455544 4455555555555555555556666666555543 2233444444444555556666666555544


Q ss_pred             h
Q 015811          325 F  325 (400)
Q Consensus       325 ~  325 (400)
                      +
T Consensus       400 r  400 (458)
T PRK11906        400 Q  400 (458)
T ss_pred             c
Confidence            3

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.56  E-value=0.055  Score=46.73  Aligned_cols=63  Identities=10%  Similarity=0.102  Sum_probs=36.7

Q ss_pred             cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH----HHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          227 VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA----FTYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      ...+..+..+|...|++++|...|+..++.+  |+.    .+|..+..+|...|+.++|...+++..+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445556666666666666666666665543  331    23556666666666666666666666553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.067  Score=45.11  Aligned_cols=95  Identities=12%  Similarity=0.014  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL  342 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  342 (400)
                      .++..+.-++.+.+++..|+..-+..+..+ ++|....-.-.+++...|+++.|+..|+++++.  .|+......=+..|
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            456677778889999999999999988887 678888878888999999999999999999876  56655544433333


Q ss_pred             -hccchH-HHHHHHHHHHhh
Q 015811          343 -FEIRQA-ERALKLFVEMQG  360 (400)
Q Consensus       343 -~~~~~~-~~a~~~~~~~~~  360 (400)
                       -+..++ +...++|..|..
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence             333333 344677777764

>PRK11906 transcriptional regulator; Provisional

Probab=96.52  E-value=0.47  Score=41.33  Aligned_cols=167  Identities=9%  Similarity=0.041  Sum_probs=100.5

Q ss_pred             CCCc---chH--HHHHHHHHcc-----CChhHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhc---------CChhhHH
Q 015811            8 PPPV---SSF--NILLGCLAKN-----KHYDTVLSLFKRLNSI-GLFPD-LYTYSILINCFCKM---------GQVSLGF   66 (400)
Q Consensus         8 p~~~---~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~---------~~~~~a~   66 (400)
                      |.+.   .+|  ..++.+....     ...+.|+.+|.+.... ...|+ ...|..+..++...         .+..+|.
T Consensus       245 ~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~  324 (458)
T PRK11906        245 KQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKAL  324 (458)
T ss_pred             CCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3455   667  6666666552     2356788888888721 22343 44555444443321         2344666


Q ss_pred             HHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           67 VIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++-+...+.+ +.|......+..+..-.++++.|...|++....+ +-...+|......+.-.|+.++|.+.+++..+..
T Consensus       325 ~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        325 ELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            7777777765 3377777777777777788888888888888764 3344555555556667888888888888876654


Q ss_pred             CcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811          147 GEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ  182 (400)
Q Consensus       147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  182 (400)
                      +     .+.-.......+..|+.. ..+.++++|-+
T Consensus       403 P-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        403 P-----RRRKAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             c-----hhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            2     222233333444445443 45666666544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.51  E-value=0.58  Score=42.01  Aligned_cols=164  Identities=13%  Similarity=0.097  Sum_probs=104.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSL  198 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  198 (400)
                      +....-.|+-+.+++.+.+..+..+-.++....-.-.|...+..++.    ..+.+.|.+++..+.+.  -|+...|...
T Consensus       195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~  272 (468)
T PF10300_consen  195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF  272 (468)
T ss_pred             HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            34444578999999999987764421100000111234444443333    45678899999998876  4676666543


Q ss_pred             -HHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHH-HHH
Q 015811          199 -IHGFCHANDWNEAKGLLIEMVDQG---VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMD-GFC  273 (400)
Q Consensus       199 -~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~  273 (400)
                       .+.+...|+.++|++.++......   .+.....+-.+...+.-.++|++|...+..+.+.. ..+..+|.-+.. ++.
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~  351 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL  351 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence             345667799999999999766421   11223445556677888999999999999998864 445555554433 344


Q ss_pred             cCCCh-------HHHHHHHHHHH
Q 015811          274 LTGKI-------NRVKELFVSME  289 (400)
Q Consensus       274 ~~~~~-------~~a~~~~~~~~  289 (400)
                      ..++.       ++|..++.++.
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHH
Confidence            56666       77888887764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.50  E-value=0.31  Score=43.70  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChH------hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHH
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVV------TYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNVVSSN  231 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  231 (400)
                      .+++...-.||-+.+++.+....+.+--..+.      .|..++..++.    ..+.+.|.+++..+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            44455556788888888888766542111111      23333333332    34578888888888876  45554443


Q ss_pred             H-HHHHHHhcCCchhHHHHHHHHHhCC---CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH-H
Q 015811          232 V-IMNELCKNGKMDNASRLLDLMVQCD---VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILIN-G  306 (400)
Q Consensus       232 ~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~  306 (400)
                      . -.+.+...|++++|.+.|+......   .+.....+--+.-.+...+++++|...|..+.+.. ..+..+|..+.. +
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence            3 3456677889999999988765321   11223344455566777888999999998888754 445555554443 3


Q ss_pred             HHhcCCH-------HHHHHHHhhhh
Q 015811          307 YCKNKEV-------EEALSLYNELP  324 (400)
Q Consensus       307 ~~~~~~~-------~~A~~~~~~~~  324 (400)
                      +...++.       ++|..++.+..
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHH
Confidence            4456666       77888887764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.49  E-value=0.21  Score=38.44  Aligned_cols=63  Identities=14%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA  109 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  109 (400)
                      +.+||.+.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++.-|.+-+...-+
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence            34555555555555555555555555555432222222222222 1234555555544444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.7  Score=42.52  Aligned_cols=321  Identities=12%  Similarity=0.080  Sum_probs=175.4

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV--SLGFVIFGRILRSCFAPNVVTFTSLIKGLCA   93 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   93 (400)
                      .+|.-+...+.|..|+++-..+...-.. ....|.....-+.+..+.  +.+.+..++=++... -....|..+.+-...
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~  519 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ  519 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence            4566677788899999887776532111 145566665555554322  222222222222212 245567778877788


Q ss_pred             cCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccc-----ccCChhhHHHHH
Q 015811           94 ESRIVEAAALFTKLKAFGCE----PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVV-----FKPNTVTYSIII  164 (400)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~  164 (400)
                      .|+++.|..+++.=...+..    .+..-+...+.-+...|+.+-...++-.+.+.-......     .+.....|.-++
T Consensus       520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~  599 (829)
T KOG2280|consen  520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM  599 (829)
T ss_pred             cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence            99999998877652222100    122234445555666777777666665555432100000     011112222222


Q ss_pred             H--------HHHhcCChHHHHHHHH--HHHHc-CCCCChHhHHHHHHHHHhcCCHH----------HHHHHHHHHHHC-C
Q 015811          165 D--------GLCKEGFVDKAKELFL--QMKYE-NLNPNVVTYTSLIHGFCHANDWN----------EAKGLLIEMVDQ-G  222 (400)
Q Consensus       165 ~--------~~~~~~~~~~a~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~-~  222 (400)
                      +        -+.+.++-.++...|.  ..... .+.+-..........+.+.....          .-..+.+.+..+ |
T Consensus       600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~  679 (829)
T KOG2280|consen  600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG  679 (829)
T ss_pred             HhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1        0111112112221111  10000 01111122233334444433311          111222222222 3


Q ss_pred             CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811          223 VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI  302 (400)
Q Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  302 (400)
                      .....-+.+.-+.-+...|+-.+|.++-.+..    -||...|-.=+.+++..+++++.+++-+...      .+.-|.-
T Consensus       680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P  749 (829)
T KOG2280|consen  680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP  749 (829)
T ss_pred             cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence            33444566667777888999999988877663    5788888888999999999988777665443      2455778


Q ss_pred             HHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHH
Q 015811          303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVE  357 (400)
Q Consensus       303 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  357 (400)
                      .+.+|.+.|+.++|.+++-+....     .    -...+|.+.|++.+|.++--+
T Consensus       750 FVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  750 FVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence            899999999999999998776432     1    466788888998888876544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.46  E-value=0.5  Score=40.76  Aligned_cols=79  Identities=19%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHhcCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHH
Q 015811          278 INRVKELFVSMESMGCKHDDF----SYNILING--YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERA  351 (400)
Q Consensus       278 ~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a  351 (400)
                      +.+-.++-+-+.+.|++|-..    .-|.|.++  +...|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|
T Consensus       437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence            344444444455556555332    33444333  4566777777655544443  367777777777777777788888


Q ss_pred             HHHHHHH
Q 015811          352 LKLFVEM  358 (400)
Q Consensus       352 ~~~~~~~  358 (400)
                      ..++..+
T Consensus       515 ~~~l~~L  521 (549)
T PF07079_consen  515 WEYLQKL  521 (549)
T ss_pred             HHHHHhC
Confidence            8777764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.27  E-value=0.32  Score=43.05  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=26.8

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      +...|..|.....+.|+++-|.+.|.+..+               |..++-.|.-.|+.+...++.+....
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------------FSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            444555555555555555555555554322               33444444555555544444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.23  E-value=0.015  Score=32.30  Aligned_cols=39  Identities=15%  Similarity=0.148  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSIL   52 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l   52 (400)
                      +|..+...|.+.|++++|+++|+++.+.. +-|...+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence            45556666666666666666666666553 3344444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.15  Score=43.20  Aligned_cols=124  Identities=18%  Similarity=0.114  Sum_probs=85.9

Q ss_pred             HHHHhcCChhhHHHHHHHHHhc-----cCC---------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 015811           54 NCFCKMGQVSLGFVIFGRILRS-----CFA---------PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITY  119 (400)
Q Consensus        54 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  119 (400)
                      ..+.+.|++..|...|++.+..     +.+         .-..++..+.-++.+.+++..|++.-++.+..+ +.++...
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            4566777777777777765542     111         123456777888889999999999988888876 6788888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH-HHHHHHHHHHH
Q 015811          120 NTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD-KAKELFLQMKY  185 (400)
Q Consensus       120 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~  185 (400)
                      ..-..++...|+++.|...|+++.+..       |.|...-+-++.+-.+..... ...++|..|..
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888999999999999999998864       334444444444444444433 34667777754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.14  E-value=0.66  Score=38.84  Aligned_cols=23  Identities=13%  Similarity=0.173  Sum_probs=12.4

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHH
Q 015811          266 NTLMDGFCLTGKINRVKELFVSM  288 (400)
Q Consensus       266 ~~l~~~~~~~~~~~~a~~~~~~~  288 (400)
                      ..+...|...|+.+.|+.-|+..
T Consensus       250 ~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  250 LCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHH
Confidence            34445555556666655555543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.05  E-value=0.092  Score=42.01  Aligned_cols=50  Identities=16%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             CcHHHHHHHHHHHHc-----CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 015811          260 PNAFTYNTLMDGFCL-----TGKINRVKELFVSMESMGCKHDDFSYNILINGYCK  309 (400)
Q Consensus       260 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  309 (400)
                      -|...|-..+..+..     .+..+=....++.|.+.|+.-|..+|+.|+..+-+
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK  119 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK  119 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence            355566666655543     24455555666777777777788888777776543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.04  E-value=0.31  Score=34.14  Aligned_cols=92  Identities=15%  Similarity=0.033  Sum_probs=64.9

Q ss_pred             HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH---HHHHHHHHHHhcC
Q 015811           19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV---TFTSLIKGLCAES   95 (400)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~   95 (400)
                      -+++..|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++.++..-..+..   .|..-...|...|
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            35667888888888888877653 4467788888888888888888888888877643222222   2333445566778


Q ss_pred             CHHHHHHHHHHHHHcC
Q 015811           96 RIVEAAALFTKLKAFG  111 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~~  111 (400)
                      +-+.|..-|+...+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            8888888887777666

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.03  E-value=0.58  Score=37.26  Aligned_cols=81  Identities=11%  Similarity=-0.005  Sum_probs=50.4

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCF--APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI  123 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  123 (400)
                      ...|+..+ .-.+.|++++|.+.|+.+....+  +-...+...++.++.+.++++.|+..+++....-.......|...|
T Consensus        35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            33444433 34677888888888888886532  1234455666777788888888888888887763222233344444


Q ss_pred             HHHH
Q 015811          124 NGLC  127 (400)
Q Consensus       124 ~~~~  127 (400)
                      .+++
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            4444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.01  E-value=0.38  Score=34.97  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=16.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC  203 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  203 (400)
                      .++..+...+.+.....+++.+...+ ..+....+.++..|+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~   52 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA   52 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence            33333333344444444444443332 123333444444443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.35  Score=39.94  Aligned_cols=156  Identities=13%  Similarity=0.113  Sum_probs=110.3

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH----HHHHHHHHhcCCc
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSS----NVIMNELCKNGKM  243 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~  243 (400)
                      -..|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-...++++... -.+|...|    ....-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3567888888888888865 4557777777788888999999888888888764 12344333    3344556788999


Q ss_pred             hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015811          244 DNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM---GCKHDDFSYNILINGYCKNKEVEEALSLY  320 (400)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  320 (400)
                      ++|++.-++..+.+ +.|...-.+....+.-.|+..++.++..+-...   +.-.-...|-...-.+...+.++.|+.+|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999998876 667777788888888889999988887665431   10011122333444566778999999999


Q ss_pred             hhhhhC
Q 015811          321 NELPFK  326 (400)
Q Consensus       321 ~~~~~~  326 (400)
                      +.-+-.
T Consensus       271 D~ei~k  276 (491)
T KOG2610|consen  271 DREIWK  276 (491)
T ss_pred             HHHHHH
Confidence            864433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.59  Score=36.81  Aligned_cols=208  Identities=13%  Similarity=0.063  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      ...|.....+|....++++|...+.+..+- .+.+...|.       .....+.|.-+.+++...        +--...|
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--------sEvvdl~   94 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--------SEVVDLY   94 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--------HHHHHHH
Confidence            344555666777788888888877766532 122222222       123345555555555542        2234455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCcccHHHHHH
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ---G--VQPNVVSSNVIMN  235 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~  235 (400)
                      +.....|...|.++.|-..+++.-+.                ..+-++++|+.++++...-   +  ...-...+..+.+
T Consensus        95 eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr  158 (308)
T KOG1585|consen   95 EKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR  158 (308)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            66666777777777776666655432                1223344444444443221   0  0001122333444


Q ss_pred             HHHhcCCchhHHHHHHHHH----hCCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 015811          236 ELCKNGKMDNASRLLDLMV----QCDVRPN-AFTYNTLMDGFCLTGKINRVKELFVSMESMG---CKHDDFSYNILINGY  307 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~  307 (400)
                      .+.+...+++|-..+.+-.    +..-.++ -..|...|-.+....++..|...++.-.+.+   -+.+..+...|+.+|
T Consensus       159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay  238 (308)
T KOG1585|consen  159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY  238 (308)
T ss_pred             HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence            5556666666554443321    1111122 2234455555666678888888887754432   233455666666665


Q ss_pred             HhcCCHHHHHHHHh
Q 015811          308 CKNKEVEEALSLYN  321 (400)
Q Consensus       308 ~~~~~~~~A~~~~~  321 (400)
                       ..|+.+++..++.
T Consensus       239 -d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  239 -DEGDIEEIKKVLS  251 (308)
T ss_pred             -ccCCHHHHHHHHc
Confidence             4566666665553

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.52  Score=43.91  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=40.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      ..+.+.|++++|...|-+-+.. +.|+     .++.-|.......+-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus       376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~  448 (933)
T KOG2114|consen  376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE  448 (933)
T ss_pred             HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence            3344556666666555544322 1221     2333444444555555555666555533 3344455556666666655


Q ss_pred             hHHHHHHHH
Q 015811          245 NASRLLDLM  253 (400)
Q Consensus       245 ~a~~~~~~~  253 (400)
                      +..++.+..
T Consensus       449 kL~efI~~~  457 (933)
T KOG2114|consen  449 KLTEFISKC  457 (933)
T ss_pred             HHHHHHhcC
Confidence            555444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.95  E-value=0.2  Score=44.27  Aligned_cols=142  Identities=15%  Similarity=0.111  Sum_probs=86.9

Q ss_pred             HHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH-------HHHHHhcc----------CCccHH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVI-------FGRILRSC----------FAPNVV   82 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~----------~~~~~~   82 (400)
                      ...-+++++++.++.+.-.-.. .-+....+.++..+-+.|-.+.|+++       |+-.++.|          ...+..
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~  348 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE  348 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence            3344666666655554111000 01133455555555666666655544       22222222          134778


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      .|..|......+|+++-|++.|.+...         +..|+-.|.-.|+.+...++.+.....+            -++.
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------------~~n~  407 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------------DINI  407 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------------HHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------------CHHH
Confidence            999999999999999999999988653         5677778888999988888888777665            3666


Q ss_pred             HHHHHHhcCChHHHHHHHHHH
Q 015811          163 IIDGLCKEGFVDKAKELFLQM  183 (400)
Q Consensus       163 l~~~~~~~~~~~~a~~~~~~~  183 (400)
                      ...++.-.|+.++..+++...
T Consensus       408 af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  408 AFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHc
Confidence            677777789998888877653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.91  E-value=0.34  Score=40.46  Aligned_cols=233  Identities=9%  Similarity=0.021  Sum_probs=139.9

Q ss_pred             HHHccCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--cCC---ccHHHHHHHHHHHH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSI--GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS--CFA---PNVVTFTSLIKGLC   92 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~   92 (400)
                      -+....+.++|+..+..-+..  +...-..++..+..+.++.|.+++++..--..++.  ...   .--..|..+.+++-
T Consensus        15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e   94 (518)
T KOG1941|consen   15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE   94 (518)
T ss_pred             hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888888888776542  11112346777788888888888776542222111  001   12234555666666


Q ss_pred             hcCCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           93 AESRIVEAAALFTKLKAF-GCEPN---VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      +..++.+++.+-..-... |..|.   -....++..++...+.++++++.|+...+...+.+- ......+|-.+.+.|.
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~  173 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFA  173 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHH
Confidence            666666666655544432 22221   123344666777778899999999887665422110 1233467889999999


Q ss_pred             hcCChHHHHHHHHHHHHc----CCCCCh-HhH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CcccHHHH
Q 015811          169 KEGFVDKAKELFLQMKYE----NLNPNV-VTY-----TSLIHGFCHANDWNEAKGLLIEMVD----QGVQP-NVVSSNVI  233 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~----~~~~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l  233 (400)
                      +..|+++|.-+..+..+.    ++. |. .-|     ..+.-++...|....|.+.-++..+    .|-.+ .......+
T Consensus       174 ~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~  252 (518)
T KOG1941|consen  174 QLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF  252 (518)
T ss_pred             HHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            999999998777665432    222 22 112     2234456677888777777776554    33211 22344556


Q ss_pred             HHHHHhcCCchhHHHHHHHHH
Q 015811          234 MNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       234 ~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ...|...|+.+.|..-|+...
T Consensus       253 aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  253 ADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHhcccHhHHHHHHHHHH
Confidence            778889999999988887654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=0.35  Score=39.89  Aligned_cols=152  Identities=9%  Similarity=-0.006  Sum_probs=92.5

Q ss_pred             hcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----HHHHHHHHHhcCChH
Q 015811           58 KMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT----YNTLINGLCRTGHTI  133 (400)
Q Consensus        58 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~  133 (400)
                      ..|+..+|-..++++++.- +.|...+..-=.+|...|+...-...++++...= .++...    ...+.-++...|.++
T Consensus       115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence            3566667777777777652 4466666666667777777777777777766431 233322    223344556678888


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCCHHH
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN---PNVVTYTSLIHGFCHANDWNE  210 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~  210 (400)
                      +|.+.-++..+.+       +.|..........+...|++.++.+++.+-...--.   .-.+-|=...-.+...+.++.
T Consensus       193 dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~  265 (491)
T KOG2610|consen  193 DAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK  265 (491)
T ss_pred             hHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence            8888888877765       566677777777777788888887776654322000   001112222334455577888


Q ss_pred             HHHHHHHH
Q 015811          211 AKGLLIEM  218 (400)
Q Consensus       211 a~~~~~~~  218 (400)
                      |+++|+.-
T Consensus       266 aleIyD~e  273 (491)
T KOG2610|consen  266 ALEIYDRE  273 (491)
T ss_pred             HHHHHHHH
Confidence            88887653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.84  E-value=2  Score=41.99  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=21.2

Q ss_pred             CCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHc
Q 015811          113 EPNVITYNTLINGLCRTG--HTIVALNLFKEMTN  144 (400)
Q Consensus       113 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~  144 (400)
                      .|+ .-...++.+|.+.+  ..++++....+...
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            444 44556788888877  66777777777664

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.82  E-value=0.89  Score=37.69  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHhcCChH---HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh
Q 015811          118 TYNTLINGLCRTGHTI---VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT  194 (400)
Q Consensus       118 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  194 (400)
                      ++..++.++...+..+   +|..+++.+....       +-.+..+..-+..+.+.++.+.+.+.+..|...- ......
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~  157 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESN  157 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccch
Confidence            4556667777666543   4555666665543       2334555566677777788888888888887652 212334


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCC
Q 015811          195 YTSLIHGFCHA--NDWNEAKGLLIEMVDQGVQPN  226 (400)
Q Consensus       195 ~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~  226 (400)
                      +...+..+...  .....+...+..+....+.|.
T Consensus       158 ~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  158 FDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence            44444443211  223445555555544433333

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.79  E-value=0.27  Score=39.41  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=37.4

Q ss_pred             cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-ChHhHHHHHHHHHhcC
Q 015811          129 TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NP-NVVTYTSLIHGFCHAN  206 (400)
Q Consensus       129 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~  206 (400)
                      .|++..|...|....+..+..    .-....+-.|..++...|++++|..+|..+.+... .| -+..+..|..+..+.|
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence            344555555555544443211    11222333444455555555555555544443310 00 1133333444444444


Q ss_pred             CHHHHHHHHHHHHHC
Q 015811          207 DWNEAKGLLIEMVDQ  221 (400)
Q Consensus       207 ~~~~a~~~~~~~~~~  221 (400)
                      +.++|..+|+++.+.
T Consensus       230 ~~d~A~atl~qv~k~  244 (262)
T COG1729         230 NTDEACATLQQVIKR  244 (262)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            555555555444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.68  E-value=0.043  Score=30.39  Aligned_cols=24  Identities=13%  Similarity=0.206  Sum_probs=10.1

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHh
Q 015811          267 TLMDGFCLTGKINRVKELFVSMES  290 (400)
Q Consensus       267 ~l~~~~~~~~~~~~a~~~~~~~~~  290 (400)
                      .+...|...|++++|.++++++.+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444444444444444444443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.55  E-value=1.1  Score=37.06  Aligned_cols=163  Identities=10%  Similarity=0.062  Sum_probs=99.7

Q ss_pred             HHccCChhHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChhhHHHHHHHHHhc----c----CCcc---
Q 015811           21 LAKNKHYDTVLSLFKRLNSIG--LFPDLY------TYSILINCFCKMG-QVSLGFVIFGRILRS----C----FAPN---   80 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---   80 (400)
                      ..++|+++.|..++.+.....  ..|+..      .|+.- ......+ +++.|..++++..+.    +    ..|+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            357899999999999986532  233321      23333 3334455 888888777766543    1    1222   


Q ss_pred             --HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811           81 --VVTFTSLIKGLCAESRIV---EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        81 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                        ..++..++.+|...+..+   +|..+++.+.... +-.+.++..-+..+.+.++.+++.+.+.+|...-       ..
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-------~~  153 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-------DH  153 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------cc
Confidence              345677778888877654   5566666665442 3335556566777777899999999999998763       32


Q ss_pred             ChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCh
Q 015811          156 NTVTYSIIIDGLCK--EGFVDKAKELFLQMKYENLNPNV  192 (400)
Q Consensus       156 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~  192 (400)
                      ....+..++..+..  ......+...+..+....+.|..
T Consensus       154 ~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            44555555555422  23345566666666555444443

It is also involved in sporulation [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.46  E-value=0.2  Score=40.22  Aligned_cols=101  Identities=11%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             CCCHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC----------------CHHHHH
Q 015811           43 FPDLYTYSILINCFCK-----MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES----------------RIVEAA  101 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~  101 (400)
                      ..|-.+|...+..+..     .+.++-....++.|.+.|+..|..+|+.|++.+-+..                +-+-++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            3456666666666644     3456666677778888888888888888887754322                234578


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHH
Q 015811          102 ALFTKLKAFGCEPNVITYNTLINGLCRTGHTI-VALNLFKEMT  143 (400)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~  143 (400)
                      +++++|...|+-||..+-..|++++.+.+..- +..+++-.|.
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            99999999999999999999999999887643 3444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.45  E-value=0.97  Score=36.36  Aligned_cols=97  Identities=18%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c-cHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-P-NVVTFTSLI   88 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~   88 (400)
                      .|+.-+..+ +.|++..|...|....+...  .-....+.-|..++...|+++.|..+|..+.+.-++ | -+..+-.|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            465555444 45667777777777776531  112345566677777777777777777777664221 1 234555666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 015811           89 KGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      .+..+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            6677777777777777777765

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=1.3  Score=36.18  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=22.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT  143 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  143 (400)
                      ...|++.+|..+|....... +-+......+..+|...|+.+.|..++..+.
T Consensus       145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            34444445555444444432 2223333344444455555555555554443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.25  E-value=0.78  Score=33.32  Aligned_cols=42  Identities=10%  Similarity=0.158  Sum_probs=18.9

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK   58 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~   58 (400)
                      .++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~   53 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence            34444444444444444444444443 2344444444444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.18  E-value=0.32  Score=39.59  Aligned_cols=77  Identities=19%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-----CCCCcCHHHHHHH
Q 015811          264 TYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-----KGIKPTVVTYNTL  338 (400)
Q Consensus       264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~l  338 (400)
                      ++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+...+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            44555666666666666666666666654 45666666677777777777666666666543     3666666665555


Q ss_pred             HHH
Q 015811          339 FHG  341 (400)
Q Consensus       339 ~~~  341 (400)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.09  E-value=0.3  Score=39.74  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA-----FGCEPNVITY  119 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  119 (400)
                      -..++..++..+...|+.+.+...++.+.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            34577888888889999999999999998875 34888899999999999999999998888765     5788888887


Q ss_pred             HHHHHHH
Q 015811          120 NTLINGL  126 (400)
Q Consensus       120 ~~l~~~~  126 (400)
                      .......
T Consensus       231 ~~y~~~~  237 (280)
T COG3629         231 ALYEEIL  237 (280)
T ss_pred             HHHHHHh
Confidence            7766663

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.07  E-value=0.78  Score=32.31  Aligned_cols=65  Identities=18%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI  328 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  328 (400)
                      ......+......|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|+
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            344444555566666666666666665433 55666666666666666666666666666665554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.02  E-value=3.2  Score=39.09  Aligned_cols=121  Identities=16%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ....-+..+.+...++-|+.+-+.   .+..++  ..........+.+.|++++|...|-+.+.. +.|.     .++.-
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k  406 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK  406 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence            344566777777888888777544   222222  223344445566788888888877766553 1222     24555


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT  143 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  143 (400)
                      |........--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            56666667777777777777743 44555667778888777766666555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.97  E-value=0.52  Score=33.05  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=47.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh---hhHHHHHHH
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT---VTYSIIIDG  166 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~  166 (400)
                      +++..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+..+      ..+.   ..|-.-...
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag------~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAG------DQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHH
Confidence            3445566666666666655542 34555666666666666666666666665554432      1111   122222234


Q ss_pred             HHhcCChHHHHHHHHHHHHcC
Q 015811          167 LCKEGFVDKAKELFLQMKYEN  187 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~~~  187 (400)
                      |...|+-+.|..=|+...+.|
T Consensus       125 yRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhC
Confidence            445556666665555554443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.97  E-value=0.84  Score=32.16  Aligned_cols=122  Identities=12%  Similarity=0.073  Sum_probs=77.2

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc-----------------CCccHHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC-----------------FAPNVVT   83 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~   83 (400)
                      +.-.|..++..++..+....   .+..-+|-++--....-+-+-..++++.+-+.-                 ...+...
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~   88 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY   88 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence            34578889999999888763   355555555544444444444444444332210                 0124455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ....+..+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            6677788888999999999999987654 7888889999999999999999999999998876

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.90  E-value=1.1  Score=33.35  Aligned_cols=133  Identities=16%  Similarity=0.211  Sum_probs=72.7

Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 015811           31 LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES--RIVEAAALFTKLK  108 (400)
Q Consensus        31 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~  108 (400)
                      .+.+..+.+.+++|+...+..++..+.+.|++...    .++++.++-+|.......+-.+....  -.+-|.+.+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            45556666777788888888888888888876543    33444444455544443332222211  1223333333332


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          109 AFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                              ..+..++..+...|++-+|+++.+.....          +......++.+..+.+|...-..+++-..+
T Consensus        90 --------~~~~~iievLL~~g~vl~ALr~ar~~~~~----------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   90 --------TAYEEIIEVLLSKGQVLEALRYARQYHKV----------DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             --------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                    12445666777778888887777665322          222334556666666665554444444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.80  E-value=0.065  Score=28.09  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=12.3

Q ss_pred             HHHHHHHHHccCChhHHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKR   36 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~   36 (400)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555555555555555555555

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.80  E-value=2  Score=35.79  Aligned_cols=139  Identities=11%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CCcccHHHHHHHHHhcCC-
Q 015811          173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCH--AN----DWNEAKGLLIEMVDQGVQ---PNVVSSNVIMNELCKNGK-  242 (400)
Q Consensus       173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-  242 (400)
                      +++.+.+++.+.+.|+.-+..+|.+.......  ..    ....+..+++.|.+....   ++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566788888988888777666553333332  22    357788999999887422   233444444322  3333 


Q ss_pred             ---chhHHHHHHHHHhCCCCCcH--HHHHHHHHHHHcCCC--hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 015811          243 ---MDNASRLLDLMVQCDVRPNA--FTYNTLMDGFCLTGK--INRVKELFVSMESMGCKHDDFSYNILINGYCKNKEV  313 (400)
Q Consensus       243 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  313 (400)
                         .+.++.+|+.+.+.|+..+-  .....++........  ..++..+++.+.+.++++....|..+.-...-.+..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~  233 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE  233 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence               34566777788776655432  333444433322222  347788888899999888888777666544443333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.75  E-value=3.1  Score=37.58  Aligned_cols=133  Identities=13%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      +...|..+|.---...+.+.+...+..++..  .|-. .-|......=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence            3455666666555555667777777777754  3443 35566666667788888888888888764 455666776665


Q ss_pred             HHHH-hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           89 KGLC-AESRIVEAAALFTKLKAF-GCE-PNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        89 ~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      ..+. ..|+.+...+.|+..... |.. .+...|...|.--...+++.....+++++.+.
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            5443 456777777777777653 322 23455666666666777777777777777653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.72  E-value=0.71  Score=35.13  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             HHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           34 FKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        34 ~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      ++...+..+.-+ ...+..+...|.+.|+.+.|.+.|.++.+....+  -...+-.+++.....+++..+...+.+....
T Consensus        23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            333334433333 3577888889999999999999999988764433  3445677888888889998888888776643


Q ss_pred             CCCCChhhHHHHHH-----HHHhcCChHHHHHHHHHHHcCC
Q 015811          111 GCEPNVITYNTLIN-----GLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       111 ~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      --.........-+.     .+...+++.+|-+.|-......
T Consensus       103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            11111111111111     2335678888888877665444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.69  E-value=0.84  Score=34.74  Aligned_cols=96  Identities=16%  Similarity=0.033  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      .++..+...|.+.|+.+.|++.|.++......+.  ...+..+++.....+++..+...+.+....-..+.......-+.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3566677777777777777777777766543332  34566677777777777777777666655321211111111121


Q ss_pred             -----HHHhcCCHHHHHHHHHHH
Q 015811           90 -----GLCAESRIVEAAALFTKL  107 (400)
Q Consensus        90 -----~~~~~~~~~~a~~~~~~~  107 (400)
                           .+...+++..|-+.|-..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHcc
Confidence                 233456666666666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.62  E-value=1.4  Score=32.94  Aligned_cols=99  Identities=12%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHh
Q 015811          213 GLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG--KINRVKELFVSMES  290 (400)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~  290 (400)
                      ++++.+.+.+++|+...+..++..+.+.|++...    ..+.+.++-+|.......+-.+....  -.+.+.+++.++..
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~   90 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT   90 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence            3444445556666666666666666666654433    33333334444444443332222211  12233333333321


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811          291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNEL  323 (400)
Q Consensus       291 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  323 (400)
                              .+..+++.+...|++-+|.++.+..
T Consensus        91 --------~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   91 --------AYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             --------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence                    2345566666777777777776654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.55  E-value=1.4  Score=32.79  Aligned_cols=123  Identities=11%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-hHHHH--HHHH
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPN-TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV-TYTSL--IHGF  202 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~  202 (400)
                      .+.+..++|+.-|..+.+.+-      ..- .-.--.........|+...|...|+++-.....|... -...|  ...+
T Consensus        69 A~~~k~d~Alaaf~~lektg~------g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL  142 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGY------GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL  142 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCC------CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence            345556666666666655441      110 1111112223445566666666666655443222221 11111  1123


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      ...|.+++.....+.+-..+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus       143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            34555555555555443333222222333444444555666666666655544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.48  E-value=1.4  Score=32.46  Aligned_cols=53  Identities=13%  Similarity=-0.033  Sum_probs=24.9

Q ss_pred             HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ...++.+++..++..+.-.. |-....-..-...+...|+|.+|..+|+++...
T Consensus        21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            34455555555555554432 111222222233445556666666666665443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.36  E-value=3.5  Score=36.51  Aligned_cols=164  Identities=12%  Similarity=0.100  Sum_probs=84.7

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      .++...-+..+.+.-++.-.+.++.  .|+- ..|..|..  -......++.++|++..+.|-    ..+..- ......
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~  243 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHH  243 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcc
Confidence            3444445556666666666666553  2433 23332221  123446677777777665431    111100 000011


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811           95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD  174 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  174 (400)
                      |.      .++........+-..+-..+..++-+.|+.++|++.++++.+..+     ..........++.++...+.+.
T Consensus       244 g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-----~~~~l~IrenLie~LLelq~Ya  312 (539)
T PF04184_consen  244 GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-----NLDNLNIRENLIEALLELQAYA  312 (539)
T ss_pred             cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----ccchhhHHHHHHHHHHhcCCHH
Confidence            11      111122221122233344566677788888888888888876541     1123346677888888888888


Q ss_pred             HHHHHHHHHHHcCCCCC-hHhHHHHH
Q 015811          175 KAKELFLQMKYENLNPN-VVTYTSLI  199 (400)
Q Consensus       175 ~a~~~~~~~~~~~~~~~-~~~~~~l~  199 (400)
                      ++..++.+..+...+.+ ...|+..+
T Consensus       313 d~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  313 DVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHHhccccCCchHHHHHHHHH
Confidence            88888888654333222 24455444

The molecular function of this protein is uncertain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.19  E-value=1.5  Score=31.63  Aligned_cols=80  Identities=11%  Similarity=0.021  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMKYENL--NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC  238 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  238 (400)
                      -.-.....+.|++++|.+.|+.+...-.  +-....-..++.+|.+.++++.|...++++++....-...-|...+.+++
T Consensus        14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            3344455678899999998888876521  12334566778888889999999999988888754333345555555554


Q ss_pred             hc
Q 015811          239 KN  240 (400)
Q Consensus       239 ~~  240 (400)
                      .-
T Consensus        94 ~~   95 (142)
T PF13512_consen   94 YY   95 (142)
T ss_pred             HH
Confidence            43

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.08  E-value=1.2  Score=36.64  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=68.2

Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 015811          111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP  190 (400)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  190 (400)
                      |.+.+..+...++..-....+++.+...+-++.......   ..++. +-...++.+ -.-++++++.++..-++.|+.|
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~---~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW---YLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchh---hhccc-cHHHHHHHH-HccChHHHHHHHhCcchhcccc
Confidence            445555666666666666677788887777776543110   11111 122233333 2346678888887777788888


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      |..+++.++..+.+.+++.+|..+...|..+
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8888888888888888888888877776654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.04  E-value=3.8  Score=35.74  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=85.3

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 015811          193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQG-VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG  271 (400)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  271 (400)
                      ..|...+....+..-.+.|..+|-++.+.+ +.++...+++++..++ .|++..|..+|+.-.... +.++.-....+..
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            455666666666677888888888888777 4566677777776544 577778888887665542 2223333445555


Q ss_pred             HHcCCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          272 FCLTGKINRVKELFVSMESMGCKHD--DFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       272 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      +...++-+.|..+|+.....- ..+  ...|..++..-..-|+...+..+=+++.+.
T Consensus       476 Li~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         476 LIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            667778888888887554321 112  456777777777778877777776666554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.95  E-value=0.13  Score=26.88  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhh
Q 015811          300 YNILINGYCKNKEVEEALSLYNE  322 (400)
Q Consensus       300 ~~~l~~~~~~~~~~~~A~~~~~~  322 (400)
                      |..|...|.+.|++++|+.++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555556666666666666555

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.84  E-value=4.5  Score=35.92  Aligned_cols=182  Identities=15%  Similarity=0.126  Sum_probs=123.5

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |-|-...-+++..+.++....-...+..+|...|  .+-..|..++++|... ..++-..+++++.+..+. |+..-..|
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL  138 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL  138 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence            3455667788899999999999999999998876  5778889999999888 567788899988887544 44444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      ...| ..++.+.+...|.++...=++..     -..|..+....  ..+.+..+.+...+....+     ...-...+..
T Consensus       139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~qd  210 (711)
T COG1747         139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQD  210 (711)
T ss_pred             HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHHH
Confidence            4444 45888888888888775432211     12444444321  4566777777777766543     2334455666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811          163 IIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF  202 (400)
Q Consensus       163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (400)
                      +-.-|....++.+|++++..+.+..- .|...-..++.-+
T Consensus       211 v~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l  249 (711)
T COG1747         211 VYKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENL  249 (711)
T ss_pred             HHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence            66778888999999999988776542 3555544454443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.81  E-value=2.1  Score=31.95  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHH-HHH--HH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVV-TFT--SL   87 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~l   87 (400)
                      ..|..-+ -+.+.+..++|+.-|..+.+.|... ..-..........+.|+...|...|+++-.....|-.. -..  .-
T Consensus        60 d~flaAL-~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAAL-KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHH-HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            4444433 3467788999999999999876442 22233444556778999999999999998765444332 111  12


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ...+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.++|..+.+..
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence            23456788999988888877765544445555667777789999999999999998754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.78  E-value=0.1  Score=26.95  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=16.0

Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015811          287 SMESMGCKHDDFSYNILINGYCKNKEVEEAL  317 (400)
Q Consensus       287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  317 (400)
                      +.++.. |-+...|..+...|...|++++|+
T Consensus         4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            333433 445555666666666666665553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.77  E-value=2.9  Score=33.48  Aligned_cols=176  Identities=12%  Similarity=0.047  Sum_probs=93.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc--
Q 015811          165 DGLCKEGFVDKAKELFLQMKYENL--NPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN--  240 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  240 (400)
                      ..-.+.|++++|.+.|+.+.....  +-...+-..++.++.+.++++.|+..+++....-......-|..-+.+++.-  
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~  121 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ  121 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence            344577899999999988886521  2233455667777888889999998888888764333334455555555421  


Q ss_pred             -----CCchh---HHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 015811          241 -----GKMDN---ASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE  312 (400)
Q Consensus       241 -----~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  312 (400)
                           .|...   |..-|+.+++.  -|+             +.=...|...+..+...    =...=..+.+.|.+.|.
T Consensus       122 i~~~~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~  182 (254)
T COG4105         122 IDDVTRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGA  182 (254)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence                 11111   22222222222  111             11111111111111110    00001245566777788


Q ss_pred             HHHHHHHHhhhhhCCCCcC---HHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          313 VEEALSLYNELPFKGIKPT---VVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       313 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      +-.|..-+++|++. .+-+   ...+-.+..+|...|-.++|.+.-+-+..
T Consensus       183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            87777777777765 2212   22344455677777777777666554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.45  E-value=3.2  Score=32.92  Aligned_cols=118  Identities=17%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             CChhhHHHHHHHHHhccCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811           60 GQVSLGFVIFGRILRSCFA-PNVVTFTSLIKGLCAESRIVEAAALFTKLKAF-GCEPNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        60 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                      +....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3344444444444433211 02344455555555566666665555555431 112333444444455555555566666


Q ss_pred             HHHHHHcCCCcccccccCChhhHHHHHH-HHHhcCChHHHHHHHHHHH
Q 015811          138 LFKEMTNGNGEIGVVFKPNTVTYSIIID-GLCKEGFVDKAKELFLQMK  184 (400)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~  184 (400)
                      .+........       .+......... .+...|+++.+...+....
T Consensus       117 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457         117 LLEKALALDP-------DPDLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             HHHHHHcCCC-------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6665554331       11111222222 4555555555555555553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.35  E-value=0.06  Score=27.80  Aligned_cols=25  Identities=16%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVL   31 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~   31 (400)
                      .|.|+.+|+.+...|...|++++|+
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            4678889999999999999998886

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.34  E-value=3.3  Score=32.81  Aligned_cols=224  Identities=16%  Similarity=0.034  Sum_probs=120.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHcC-CCcccccccCChhhHHHHHHHHHhcC
Q 015811           94 ESRIVEAAALFTKLKAFGCE-PNVITYNTLINGLCRTGHTIVALNLFKEMTNG-NGEIGVVFKPNTVTYSIIIDGLCKEG  171 (400)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (400)
                      .+....+...+......... .....+......+...+....+...+...... .      .......+......+...+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  109 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG  109 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence            34555555555555544211 12456666777777788888887777776642 1      2445566666667777777


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCC--CCcccHHHHHHHHHhcCCchhHHH
Q 015811          172 FVDKAKELFLQMKYENLNPNVVTYTSLIH-GFCHANDWNEAKGLLIEMVDQGVQ--PNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      ++..+.+.+.........+ ......... .+...|+++.+...+.........  .....+......+...++.+.+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  188 (291)
T COG0457         110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE  188 (291)
T ss_pred             hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence            7888888887777643222 122222222 566777777777777776442110  111222222233445566666666


Q ss_pred             HHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          249 LLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       249 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      .+....... +. ....+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus       189 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         189 LLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666665543 22 24455555555555666666666666665542 111223333333333444555555555555543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.16  E-value=9.7  Score=37.70  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 015811           78 APNVVTFTSLIKGLCAES--RIVEAAALFTKLKA  109 (400)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~  109 (400)
                      .|+ .....+|.+|.+.+  ..+.++....+...
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            344 44556777888777  56667666666654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.13  E-value=7.2  Score=36.14  Aligned_cols=44  Identities=7%  Similarity=0.119  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChhhHHHHHHHHHh
Q 015811           28 DTVLSLFKRLNSIGLFPDLYTYSILINC-----FCKMGQVSLGFVIFGRILR   74 (400)
Q Consensus        28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~   74 (400)
                      ..|..+++...+.|   +......+..+     +....+.+.|+.+|+...+
T Consensus       229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~  277 (552)
T KOG1550|consen  229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE  277 (552)
T ss_pred             hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence            45666666665554   22222222222     2234466666666666655

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.10  E-value=4.3  Score=35.71  Aligned_cols=101  Identities=10%  Similarity=0.082  Sum_probs=61.8

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811          155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM  234 (400)
Q Consensus       155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  234 (400)
                      .++.........+...|+++.+...+...... +.....+...+++...+.|+++.|..+-+-|+...++ ++.......
T Consensus       321 ~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa  398 (831)
T PRK15180        321 QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAA  398 (831)
T ss_pred             CCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeec
Confidence            34444444455566678888877777665443 2234556667777777778888888877777765443 333333333


Q ss_pred             HHHHhcCCchhHHHHHHHHHhCC
Q 015811          235 NELCKNGKMDNASRLLDLMVQCD  257 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~~  257 (400)
                      ...-..|-++++...|+.+...+
T Consensus       399 ~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        399 GSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             ccHHHHhHHHHHHHHHHHHhccC
Confidence            33445566777777777776554

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=9.2  Score=37.06  Aligned_cols=117  Identities=14%  Similarity=0.071  Sum_probs=74.3

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhccCCccHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYSILINCFCKMGQV--SLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .-|..|+..|...|+.++|++++.+.....   -.--...+..++.-+...+..  +-.++.-+...+........++..
T Consensus       505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~  584 (877)
T KOG2063|consen  505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS  584 (877)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence            357889999999999999999999987632   111123444566666666654  666666666655432211111211


Q ss_pred             ------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811           87 ------------LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR  128 (400)
Q Consensus        87 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  128 (400)
                                  .+-.|......+-+..+++.+....-.++....+.++..|.+
T Consensus       585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                        223455667778888889888866545566777777777764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.97  E-value=6.3  Score=35.00  Aligned_cols=62  Identities=11%  Similarity=0.120  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      -..+..++-+.|+.++|.+.+.++.+..... .......|+.++...+.+.++..++.+..+.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            3445666667788888888887776543221 2335566777777788888888877776543

The molecular function of this protein is uncertain.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.87  E-value=2.6  Score=34.75  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=52.0

Q ss_pred             CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHH
Q 015811          188 LNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG---VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFT  264 (400)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  264 (400)
                      .+.+..+...++..-...++++.++..+-++..+.   ..++.. -...++.+ -.-++++++.++..=++-|+-||..+
T Consensus        60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence            33344444444444444556666666665555431   111111 11222222 23345566666666666666666666


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811          265 YNTLMDGFCLTGKINRVKELFVSMES  290 (400)
Q Consensus       265 ~~~l~~~~~~~~~~~~a~~~~~~~~~  290 (400)
                      ++.++..+.+.+++.+|..+...|..
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            66666666666666666666555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.43  E-value=3.4  Score=30.54  Aligned_cols=87  Identities=13%  Similarity=-0.057  Sum_probs=44.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNT-LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      .-.+.++.+++..++..+.-.  .|....... -...+...|++.+|+++|+.+....        |.......|+..|.
T Consensus        19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--------~~~p~~kALlA~CL   88 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--------PGFPYAKALLALCL   88 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--------CCChHHHHHHHHHH
Confidence            344556777777777776654  343332221 2234556777777777777766543        33344444544444


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 015811          169 KEGFVDKAKELFLQMKYE  186 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~  186 (400)
                      ....-..-...-+++.+.
T Consensus        89 ~~~~D~~Wr~~A~evle~  106 (160)
T PF09613_consen   89 YALGDPSWRRYADEVLES  106 (160)
T ss_pred             HHcCChHHHHHHHHHHhc
Confidence            433333333333444444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.25  E-value=6.9  Score=33.73  Aligned_cols=65  Identities=12%  Similarity=0.028  Sum_probs=47.7

Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          191 NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP---NVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      ...++..++..+.+.|+++.|...+..+...+...   .+.....-+...-..|+..+|...++...+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45677888888889999999998888887653222   344455556677788888888888877766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.13  E-value=3.4  Score=29.98  Aligned_cols=51  Identities=8%  Similarity=-0.076  Sum_probs=22.5

Q ss_pred             CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          275 TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       275 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      .++++++..++..+.-.. |.....-..-...+...|+|++|.++|+++.+.
T Consensus        23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            455555555555554332 111111122233344555555555555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=91.86  E-value=3.2  Score=33.63  Aligned_cols=88  Identities=14%  Similarity=0.012  Sum_probs=64.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015811          122 LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG  201 (400)
Q Consensus       122 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  201 (400)
                      =|.+++..+++.+++...-+.-+..      -+.........|-.|.+.+++..+.++-..-....-.-+...|..++..
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~p------EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL  162 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVP------EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL  162 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCc------ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence            4788899999999988766655443      2445566777788899999999999988887765333344557777776


Q ss_pred             HHh-----cCCHHHHHHHH
Q 015811          202 FCH-----ANDWNEAKGLL  215 (400)
Q Consensus       202 ~~~-----~~~~~~a~~~~  215 (400)
                      |..     .|.+++|+++.
T Consensus       163 yLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  163 YLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHhccccHHHHHHHH
Confidence            654     59999998887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.86  E-value=0.48  Score=24.16  Aligned_cols=25  Identities=36%  Similarity=0.436  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          300 YNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       300 ~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      |..+..+|...|++++|+..|++.+
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHH
Confidence            3334444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.81  E-value=6.9  Score=32.76  Aligned_cols=134  Identities=12%  Similarity=0.124  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCR--TG----HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                      +++...+++.+.+.|...+..+|-+.......  ..    ....|..+|+.|++..+-.   ..++...+..++..  ..
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~  152 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TS  152 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--cc
Confidence            44556788899999988888776654333333  22    3456888999998876321   22334444444433  33


Q ss_pred             CCh----HHHHHHHHHHHHcCCCCChH--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811          171 GFV----DKAKELFLQMKYENLNPNVV--TYTSLIHGFCHAND--WNEAKGLLIEMVDQGVQPNVVSSNVIMN  235 (400)
Q Consensus       171 ~~~----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~  235 (400)
                      ++.    +.+..+|+.+.+.|+..+..  ....++..+....+  ...+.++++.+.+.|+++....|..+.-
T Consensus       153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence            333    45667777777767655432  22223322222222  3467788888888888877777665543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.67  E-value=0.51  Score=23.96  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=9.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhhh
Q 015811          302 ILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       302 ~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      .+..++...|++++|...+++..
T Consensus         6 ~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    6 YLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            33344444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.42  E-value=2.2  Score=28.23  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811           28 DTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRIL   73 (400)
Q Consensus        28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   73 (400)
                      -++.+-++.+...+..|++......+++|.+.+++..|..+++-+.
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455555555555555566666666666666666666666665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.09  E-value=6.1  Score=30.84  Aligned_cols=30  Identities=17%  Similarity=0.060  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +.+||-+.--+...|+++.|.+.|+...+.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL  128 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  128 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence            344555555555555555555555555544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.05  E-value=3.7  Score=31.60  Aligned_cols=82  Identities=13%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh---CCCCCChhhHHHHHHHhhcCCcc
Q 015811          307 YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG---NDVAADTCTYRTFIDGLCVRPQV  383 (400)
Q Consensus       307 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~  383 (400)
                      +.+.|+ +.|...|-.+...+.--++.....|...| ...+.+++..++.+..+   .+-.+|+..+.+|...+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            344454 56666666666554443444444444433 45677777777777663   23366777888888888888888


Q ss_pred             hhhHhhh
Q 015811          384 RFTYARR  390 (400)
Q Consensus       384 ~~a~~~~  390 (400)
                      +.|+-+.
T Consensus       195 e~AYiwa  201 (203)
T PF11207_consen  195 EQAYIWA  201 (203)
T ss_pred             hhhhhhe
Confidence            8876553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.04  E-value=1.7  Score=36.18  Aligned_cols=53  Identities=11%  Similarity=0.013  Sum_probs=26.0

Q ss_pred             HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                      -|.++|.+++|+..|....... +-++.++..-..+|.+...+..|+.--....
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            3555555555555555544432 1244445445555555555554444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.02  E-value=0.4  Score=25.84  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=15.0

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLN   38 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~   38 (400)
                      .+++.|...|...|++++|+.++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345555666666666666666665543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.99  E-value=14  Score=34.80  Aligned_cols=65  Identities=8%  Similarity=0.078  Sum_probs=40.2

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-------hhhHHHHHHHHHhc
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ-------VSLGFVIFGRILRS   75 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~   75 (400)
                      .+...| .+|-.|.+.|++++|.++....... .......+...+..+....+       -++...-|++..+.
T Consensus       110 ~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~  181 (613)
T PF04097_consen  110 NGDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN  181 (613)
T ss_dssp             TTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred             CCCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            344556 5777899999999999999555432 34455667777777766432       23445555555544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.95  E-value=1  Score=22.89  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=10.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811           49 YSILINCFCKMGQVSLGFVIFGRILR   74 (400)
Q Consensus        49 ~~~l~~~~~~~~~~~~a~~~~~~~~~   74 (400)
                      |..+..++...|++++|+..|++.++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            33344444444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.75  E-value=2.8  Score=27.76  Aligned_cols=27  Identities=4%  Similarity=0.060  Sum_probs=10.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811          295 HDDFSYNILINGYCKNKEVEEALSLYN  321 (400)
Q Consensus       295 ~~~~~~~~l~~~~~~~~~~~~A~~~~~  321 (400)
                      |++....+.+++|.+.+++..|.++++
T Consensus        40 P~P~ii~aaLrAcRRvND~alAVR~lE   66 (103)
T cd00923          40 PEPKVIEAALRACRRVNDFALAVRILE   66 (103)
T ss_pred             CCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            333333333333333333333333333

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=90.30  E-value=17  Score=34.49  Aligned_cols=252  Identities=11%  Similarity=-0.007  Sum_probs=129.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII  164 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (400)
                      ...+..+.+.+++....+.+..     .+.+...-.....+....|+.++|....+.+-..+       ...+..+..++
T Consensus       103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-------~~~p~~cd~l~  170 (644)
T PRK11619        103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-------KSLPNACDKLF  170 (644)
T ss_pred             HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCChHHHHHH
Confidence            3445556667777766652211     13455555667778888899888888777776655       45677788888


Q ss_pred             HHHHhcCChHHHH--HHHHHHHHcCCCCChHhHHHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCcccH
Q 015811          165 DGLCKEGFVDKAK--ELFLQMKYENLNPNVVTYTSLIHGFCHA------------NDWNEAKGLLIEMVDQGVQPNVVSS  230 (400)
Q Consensus       165 ~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~  230 (400)
                      ..+.+.|......  +=+..+...|   +...-..+...+...            .+...+...+.     .++++...-
T Consensus       171 ~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~  242 (644)
T PRK11619        171 SVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTR  242 (644)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhH
Confidence            8888666544332  2222222222   222222222211000            11111111111     112222111


Q ss_pred             HHHHHHH--HhcCCchhHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015811          231 NVIMNEL--CKNGKMDNASRLLDLMVQCD-VRPN--AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILIN  305 (400)
Q Consensus       231 ~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  305 (400)
                      ..++.++  ....+.+.|..++....... ..+.  ..+...+.......+...++...+......  ..+......-+.
T Consensus       243 ~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r  320 (644)
T PRK11619        243 QMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVR  320 (644)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHH
Confidence            2122222  23445678888887764432 2211  122334443333332245556565554332  234445555566


Q ss_pred             HHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          306 GYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       306 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      .....++++.+...+..|....-. ...-.--+..++...|+.++|...|+.+.
T Consensus       321 ~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        321 MALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            666888888888888887653211 22333345566666788888888888764

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.29  E-value=4  Score=27.35  Aligned_cols=43  Identities=7%  Similarity=0.074  Sum_probs=19.1

Q ss_pred             HHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811           66 FVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      .+-+..+......|++.+..+.+++|.+.+++..|.++|+.++
T Consensus        30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444444555555555555555555555555555444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.16  E-value=5.7  Score=28.91  Aligned_cols=53  Identities=17%  Similarity=0.178  Sum_probs=32.7

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYN-TLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ...++++++..+++.|.-.  .|+..-.. .-.-.+...|++++|+++|+.+.+..
T Consensus        21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            3467777777777777655  33332221 12233556788888888888877654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.14  E-value=1.3  Score=22.37  Aligned_cols=23  Identities=22%  Similarity=0.092  Sum_probs=9.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      .+..++...|++++|.+.|++..
T Consensus         6 ~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    6 YLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Confidence            33344444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.80  E-value=7.7  Score=29.96  Aligned_cols=79  Identities=9%  Similarity=-0.028  Sum_probs=59.2

Q ss_pred             HHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCh
Q 015811           56 FCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF---GCEPNVITYNTLINGLCRTGHT  132 (400)
Q Consensus        56 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  132 (400)
                      ..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+.   +-.+|+..+.+|+..+.+.|+.
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            344454 568888888887765556666666666665 77889999999888764   2357788999999999999999


Q ss_pred             HHHH
Q 015811          133 IVAL  136 (400)
Q Consensus       133 ~~a~  136 (400)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.60  E-value=0.91  Score=24.34  Aligned_cols=26  Identities=38%  Similarity=0.418  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      +++.+...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            45555555666666666666555544

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=89.40  E-value=18  Score=33.71  Aligned_cols=114  Identities=11%  Similarity=0.088  Sum_probs=23.1

Q ss_pred             cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC----CCCcCHHHHH
Q 015811          261 NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK----GIKPTVVTYN  336 (400)
Q Consensus       261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~  336 (400)
                      +......++..|.+.|-.+.+..+.+.+-..-.  ...-|..-+..+.+.|+......+.+.+.+.    |...+....+
T Consensus       404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~  481 (566)
T PF07575_consen  404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLD  481 (566)
T ss_dssp             SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------------------
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            344455556666666666666666665533211  1233445555556666655555544444422    1111111111


Q ss_pred             HH---------------HH---HHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 015811          337 TL---------------FH---GLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDG  376 (400)
Q Consensus       337 ~l---------------~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  376 (400)
                      .+               ..   ...+.|++.+|.+.+-.+.+.++.|...-...|.++
T Consensus       482 ~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~  539 (566)
T PF07575_consen  482 NIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA  539 (566)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence            00               00   113346777777777777776676666544444443

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.36  E-value=11  Score=31.01  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh-----hCCCCCChhh
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ-----GNDVAADTCT  369 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  369 (400)
                      +++.....|..+|.+.+|.++.++....+ +.+...+..|+..+...|+--.+.+.++++.     +.|+..|...
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            45666778889999999999999888753 3467778888889999999888888777765     3466655544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.34  E-value=8.1  Score=29.77  Aligned_cols=91  Identities=12%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             HHHhcCChhhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811           55 CFCKMGQVSLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG  130 (400)
Q Consensus        55 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  130 (400)
                      -+...|++++|..-|...+..-+...    ...|..-..++.+.+.++.|+.--.+.++.+ +....+...-..+|.+..
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME  182 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence            34556777777777777766532211    2234444456667777777777666666654 223333334455667777


Q ss_pred             ChHHHHHHHHHHHcCC
Q 015811          131 HTIVALNLFKEMTNGN  146 (400)
Q Consensus       131 ~~~~a~~~~~~~~~~~  146 (400)
                      .+++|+.-|+++....
T Consensus       183 k~eealeDyKki~E~d  198 (271)
T KOG4234|consen  183 KYEEALEDYKKILESD  198 (271)
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            7777777777777665

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.27  E-value=36  Score=36.92  Aligned_cols=152  Identities=11%  Similarity=0.050  Sum_probs=99.1

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFP--DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA   93 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   93 (400)
                      .+..+-.+.+.+..|...++.-.....+-  ....+..+...|...++++...-+......     +...+ .-|-....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence            55566778899999999998842111111  223344444489999999988777664221     22222 33445567


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH-HHHHHHHhcCC
Q 015811           94 ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS-IIIDGLCKEGF  172 (400)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~  172 (400)
                      .|++..|...|+.+.+.+ ++...+++.++......|.+...+-..+......       .+....++ .-..+.-+.++
T Consensus      1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred             hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhhcc
Confidence            899999999999999885 4457788888888888888888877666655443       23333333 33444567777


Q ss_pred             hHHHHHHHH
Q 015811          173 VDKAKELFL  181 (400)
Q Consensus       173 ~~~a~~~~~  181 (400)
                      ++.......
T Consensus      1534 wD~~e~~l~ 1542 (2382)
T KOG0890|consen 1534 WDLLESYLS 1542 (2382)
T ss_pred             hhhhhhhhh
Confidence            777776655

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.24  E-value=8.4  Score=29.55  Aligned_cols=89  Identities=9%  Similarity=0.050  Sum_probs=58.2

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHh
Q 015811          269 MDGFCLTGKINRVKELFVSMESMGCKHDDFSYN-----ILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLF  343 (400)
Q Consensus       269 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  343 (400)
                      ...+...++++.|...++.....   |....+.     .|.+.....|.+++|+.+++.....+.  .......-.+.+.
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill  170 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL  170 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence            45667778888888888777653   2222222     344556778888888888887765432  2222333345778


Q ss_pred             ccchHHHHHHHHHHHhhCC
Q 015811          344 EIRQAERALKLFVEMQGND  362 (400)
Q Consensus       344 ~~~~~~~a~~~~~~~~~~~  362 (400)
                      ..|+.++|..-|++.++.+
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         171 AKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HcCchHHHHHHHHHHHHcc
Confidence            8888888888888887764

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.05  E-value=5.1  Score=26.86  Aligned_cols=78  Identities=10%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             chHHHHHHHHHccCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKH--YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ..|+.--..+....+  .=+..+-++.+...++.|++......+.+|.+.+++..|..+++-+...- .+....|..+++
T Consensus         9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq   87 (108)
T PF02284_consen    9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence            444444445554444  33777888888888889999999999999999999999999999887642 223336666654


Q ss_pred             H
Q 015811           90 G   90 (400)
Q Consensus        90 ~   90 (400)
                      -
T Consensus        88 E   88 (108)
T PF02284_consen   88 E   88 (108)
T ss_dssp             H
T ss_pred             H
Confidence            3

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.04  E-value=4.9  Score=31.39  Aligned_cols=76  Identities=16%  Similarity=0.124  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHH
Q 015811          119 YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN--LNPNVVTYT  196 (400)
Q Consensus       119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~  196 (400)
                      .+..++.+.+.+...+++...++-.+..       |.+...-..++..++-.|+|++|..-++..-+..  ..+...+|.
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr   76 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR   76 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence            3445556666777777777776665543       4556666677777777777777776666554431  122334555


Q ss_pred             HHHHH
Q 015811          197 SLIHG  201 (400)
Q Consensus       197 ~l~~~  201 (400)
                      .++.+
T Consensus        77 ~lir~   81 (273)
T COG4455          77 HLIRC   81 (273)
T ss_pred             HHHHH
Confidence            55543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.70  E-value=0.28  Score=35.82  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 015811          233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE  312 (400)
Q Consensus       233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  312 (400)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++...       ..-...++..|.+.|-
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence            344555566666666666666655444556666666777776666566655555111       1222345555566666


Q ss_pred             HHHHHHHHhhhh
Q 015811          313 VEEALSLYNELP  324 (400)
Q Consensus       313 ~~~A~~~~~~~~  324 (400)
                      +++|.-++.++-
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            666666665543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.65  E-value=0.26  Score=35.99  Aligned_cols=85  Identities=11%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES   95 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   95 (400)
                      .++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++..       +..-...+++.|.+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence            356677777888888888888877665556777888888888887767766666511       1122244566666666


Q ss_pred             CHHHHHHHHHHH
Q 015811           96 RIVEAAALFTKL  107 (400)
Q Consensus        96 ~~~~a~~~~~~~  107 (400)
                      .++++.-++.++
T Consensus        85 l~~~a~~Ly~~~   96 (143)
T PF00637_consen   85 LYEEAVYLYSKL   96 (143)
T ss_dssp             SHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHc
Confidence            666666655543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.46  E-value=20  Score=32.88  Aligned_cols=82  Identities=12%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +..-|..|.++....+++..|.+.|.+...         |..|+-.+...|+.+....+-....+.+            .
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g------------~  723 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG------------K  723 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc------------c
Confidence            334455555555555555555555554432         2234444444555443333333333332            1


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQ  182 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~  182 (400)
                      .|...-++...|+++++.+++..
T Consensus       724 ~N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  724 NNLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHh
Confidence            22233344455666666555543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.94  E-value=0.9  Score=22.76  Aligned_cols=19  Identities=26%  Similarity=0.445  Sum_probs=8.0

Q ss_pred             HHHhcCCHHHHHHHHhhhh
Q 015811          306 GYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       306 ~~~~~~~~~~A~~~~~~~~  324 (400)
                      ++.+.|++++|...|++++
T Consensus         9 ~~~~~g~~~~A~~~~~~~~   27 (33)
T PF13174_consen    9 CYYKLGDYDEAIEYFQRLI   27 (33)
T ss_dssp             HHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHH
Confidence            3334444444444444443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.59  E-value=7  Score=30.58  Aligned_cols=54  Identities=19%  Similarity=0.136  Sum_probs=24.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM  142 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  142 (400)
                      +..+.+.+...+++...+.-.+.. +.+...-..+++.++-.|++++|+.-++-.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            334444455555555444444432 223334444455555555555554444433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.55  E-value=10  Score=28.65  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhC
Q 015811          313 VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGN  361 (400)
Q Consensus       313 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  361 (400)
                      +++|...|++..+.  .|+...|+.-+...      ++|-++..++.+.
T Consensus        96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~  136 (186)
T PF06552_consen   96 FEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence            44555555555544  67777777665544      2345555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.52  E-value=24  Score=32.81  Aligned_cols=275  Identities=13%  Similarity=0.046  Sum_probs=155.3

Q ss_pred             hhhHHHHHHHHHhccCCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC-
Q 015811           62 VSLGFVIFGRILRSCFAPNVVTFTSLIKG---LCAESRIVEAAALFTKLKA-------FGCEPNVITYNTLINGLCRTG-  130 (400)
Q Consensus        62 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-  130 (400)
                      ...+.++++...+.|.. .......++..   +....+.+.|..+|+...+       .|   .......+..+|.+.. 
T Consensus       228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~  303 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG  303 (552)
T ss_pred             hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence            46788888888887622 22222222222   3356789999999999877       44   3445666777777643 


Q ss_pred             ----ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH--
Q 015811          131 ----HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK-EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFC--  203 (400)
Q Consensus       131 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--  203 (400)
                          +.+.|+.++.+....+       .|+....-..+..... ..+...|.++|....+.|..   ..+-.+..+|.  
T Consensus       304 ~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G  373 (552)
T KOG1550|consen  304 VEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG  373 (552)
T ss_pred             CccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence                5677999999988876       4554443333332222 35678999999999988743   22222222222  


Q ss_pred             --hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-H---Hc---
Q 015811          204 --HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-F---CL---  274 (400)
Q Consensus       204 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~---  274 (400)
                        -..+...|..++.+.-+.| .|........+..+.. +.++.+.-.+..+.+.+.. ...+-...+.. .   ..   
T Consensus       374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~  450 (552)
T KOG1550|consen  374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRG  450 (552)
T ss_pred             CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccc
Confidence              2346889999999998887 3332222222333344 7777777777777666532 22222222111 1   11   


Q ss_pred             -CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHhhhhhCCCCcCHHHHHHHHH----HHhcc
Q 015811          275 -TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN----KEVEEALSLYNELPFKGIKPTVVTYNTLFH----GLFEI  345 (400)
Q Consensus       275 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~  345 (400)
                       ..+.+.+...+.+....|   +......+...|..-    .+++.|...+......+   ....|+ +..    +....
T Consensus       451 ~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~  523 (552)
T KOG1550|consen  451 VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIK  523 (552)
T ss_pred             cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcc
Confidence             124556666666666554   444455555555432    34677777777666553   222222 111    11112


Q ss_pred             chHHHHHHHHHHHhhC
Q 015811          346 RQAERALKLFVEMQGN  361 (400)
Q Consensus       346 ~~~~~a~~~~~~~~~~  361 (400)
                      . ...|.+++.+..+.
T Consensus       524 ~-~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  524 V-LHLAKRYYDQASEE  538 (552)
T ss_pred             h-hHHHHHHHHHHHhc
Confidence            2 56666666665543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.32  E-value=29  Score=33.50  Aligned_cols=231  Identities=14%  Similarity=0.068  Sum_probs=123.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHH-HHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVI-------TYNTLI-NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      .....+++.+|..++.++...-..|+..       .++.+- ......|++++|.++.+.....-+...  ..+....+.
T Consensus       424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~s  501 (894)
T COG2909         424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALS  501 (894)
T ss_pred             HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhh
Confidence            3446788999999998887542232221       233332 223457889999998887765431110  234456667


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH-----HHHHhcCCH--HHHHHHHHHHHHCC---CC---CCcc
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLI-----HGFCHANDW--NEAKGLLIEMVDQG---VQ---PNVV  228 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~  228 (400)
                      .+..+..-.|++++|..+.....+..-..+...+....     ..+...|+.  .+.+..+.......   .+   +-..
T Consensus       502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~  581 (894)
T COG2909         502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR  581 (894)
T ss_pred             hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence            77788888999999999888776543233444333322     224455632  23333333332221   11   1123


Q ss_pred             cHHHHHHHHHhc-CCchhHHHHHHHHHhCCCCCcHH--HHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC----CHHHHH
Q 015811          229 SSNVIMNELCKN-GKMDNASRLLDLMVQCDVRPNAF--TYNTLMDGFCLTGKINRVKELFVSMESMGCKH----DDFSYN  301 (400)
Q Consensus       229 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~  301 (400)
                      ++..++.++.+. +...++..-+.-.......|-..  .+..|+......|+++.|...+.++......+    +..+-.
T Consensus       582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            344444455441 11222222222222222122222  22367788889999999999999886543222    222212


Q ss_pred             HHH--HHHHhcCCHHHHHHHHhh
Q 015811          302 ILI--NGYCKNKEVEEALSLYNE  322 (400)
Q Consensus       302 ~l~--~~~~~~~~~~~A~~~~~~  322 (400)
                      ..+  ......|+...+.....+
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHh
Confidence            222  234567888888777665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.31  E-value=8.7  Score=34.03  Aligned_cols=42  Identities=19%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 015811           22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVS   63 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~   63 (400)
                      ..++.++..++++..+...|.......++.-...|.+.|...
T Consensus        28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq   69 (696)
T KOG2471|consen   28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ   69 (696)
T ss_pred             cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence            346889999999999998887666666888888888877654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.15  E-value=0.93  Score=21.52  Aligned_cols=22  Identities=18%  Similarity=0.078  Sum_probs=12.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFK   35 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~   35 (400)
                      ...+...+...|++++|..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3445555666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.12  E-value=1.1  Score=24.77  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=14.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          303 LINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       303 l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      +..+|...|+.+.|..+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            455666666666666666665543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.92  E-value=16  Score=30.10  Aligned_cols=40  Identities=15%  Similarity=0.012  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 015811           28 DTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIF   69 (400)
Q Consensus        28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~   69 (400)
                      .+|+++|.-+....  -...+-..++.++....+..+|...+
T Consensus       150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~l  189 (361)
T COG3947         150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLL  189 (361)
T ss_pred             hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHH
Confidence            56788887776642  12233344555555555555554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.85  E-value=12  Score=28.87  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=45.8

Q ss_pred             HHhcCCchhHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 015811          237 LCKNGKMDNASRLLDLMVQCDVRPN-----AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK  311 (400)
Q Consensus       237 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  311 (400)
                      +...|++++|..-|...+..- ++.     ...|..-..++.+.+.++.|..--...++.+ +........-..+|.+..
T Consensus       105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME  182 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence            445566666666666555542 211     1223333445556666666666655555554 222223333344566666


Q ss_pred             CHHHHHHHHhhhhhC
Q 015811          312 EVEEALSLYNELPFK  326 (400)
Q Consensus       312 ~~~~A~~~~~~~~~~  326 (400)
                      .+++|+.=|+++.+.
T Consensus       183 k~eealeDyKki~E~  197 (271)
T KOG4234|consen  183 KYEEALEDYKKILES  197 (271)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            667777666666654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.64  E-value=1.7  Score=21.92  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=15.8

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHh
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNS   39 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   39 (400)
                      +|..+...+.+.|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555566666666666666665544

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.64  E-value=12  Score=28.36  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCChh-------hHHHHHHHHHhccCCcc-HHHHHHHHHHHHhcC
Q 015811           27 YDTVLSLFKRLNSIGLFPDLYTYSILINC---FCKMGQVS-------LGFVIFGRILRSCFAPN-VVTFTSLIKGLCAES   95 (400)
Q Consensus        27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~-------~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~   95 (400)
                      ++.|.+.++.-...+ +.|...++.-.-+   +++..+..       +|..-|++.+..  .|+ ..++..+..++...+
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence            456666666654444 4555554443333   33444433       444444444544  343 345555666665443


Q ss_pred             -----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           96 -----------RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        96 -----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                                 .+++|...|++....  .|+...|+.-+....      +|-++..++.+.+
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~  137 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG  137 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence                       255666666666665  789999998887753      4566666665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.53  E-value=2.1  Score=21.30  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=10.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKA  109 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~  109 (400)
                      ..++.+.|++++|.+.|+++++
T Consensus         7 a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    7 ARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHH
Confidence            3344444444444444444443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.42  E-value=33  Score=33.18  Aligned_cols=226  Identities=11%  Similarity=0.014  Sum_probs=123.2

Q ss_pred             HHhcCChHHHHHHHHHHHcCCCcccccccCChh-------hHHHHH-HHHHhcCChHHHHHHHHHHHHc----CCCCChH
Q 015811          126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTV-------TYSIII-DGLCKEGFVDKAKELFLQMKYE----NLNPNVV  193 (400)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~  193 (400)
                      .....++.+|..++.++...-+      .|+..       .++.+- ......|+++.|.++.+.....    -..+...
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~------~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLK------APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhC------cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            3457889999999988876542      22211       233332 2345678999999988887654    1223445


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH-----HHHHHhcCCchhH--HHHHHHHHhCC---CC---C
Q 015811          194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI-----MNELCKNGKMDNA--SRLLDLMVQCD---VR---P  260 (400)
Q Consensus       194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a--~~~~~~~~~~~---~~---~  260 (400)
                      .+..+..+..-.|++++|..+..+..+..-.-+...+...     ...+...|+...+  ...+.......   .+   +
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            5667777788889999999998887765322233333222     2345566743322  23333332211   11   1


Q ss_pred             cHHHHHHHHHHHHcC-CChHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHhhhhhCC----CCcCHH
Q 015811          261 NAFTYNTLMDGFCLT-GKINRVKELFVSMESMGCKHDDFSY--NILINGYCKNKEVEEALSLYNELPFKG----IKPTVV  333 (400)
Q Consensus       261 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~  333 (400)
                      -..+...+..++.+. +...++..-++--......|-...+  ..|+.+....|++++|...++++....    ..++..
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~  658 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL  658 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            123344444554441 1122222222222222222222222  367788889999999999999887542    233333


Q ss_pred             HHHHHHH--HHhccchHHHHHHHHHH
Q 015811          334 TYNTLFH--GLFEIRQAERALKLFVE  357 (400)
Q Consensus       334 ~~~~l~~--~~~~~~~~~~a~~~~~~  357 (400)
                      +-...+.  .....|+...+.....+
T Consensus       659 a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         659 AAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            3333333  23457777777666555

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.34  E-value=1.7  Score=23.99  Aligned_cols=23  Identities=9%  Similarity=0.094  Sum_probs=12.4

Q ss_pred             HHHHHHccCChhHHHHHHHHHHh
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNS   39 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~   39 (400)
                      +..+|...|+.+.|.+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            44555555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.11  E-value=14  Score=28.48  Aligned_cols=124  Identities=10%  Similarity=0.045  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHH--
Q 015811          194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV-----IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYN--  266 (400)
Q Consensus       194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--  266 (400)
                      .|..++.... .+.. +.....+.+....   ...+|..     +...+...+++++|...++.....   |....+.  
T Consensus        56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l  127 (207)
T COG2976          56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence            3444444432 2333 4444555555442   2233332     345677888899998888877653   2222232  


Q ss_pred             ---HHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811          267 ---TLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG  327 (400)
Q Consensus       267 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  327 (400)
                         .|.+.....|.++.|...++.....+  ........-.+.+...|+-++|..-|++..+.+
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence               34556677888999988888777653  233344556678888999999999998888764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=86.07  E-value=5.8  Score=33.27  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=66.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811          200 HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN  279 (400)
Q Consensus       200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  279 (400)
                      ..|.+.|.+++|+..+...+... +-+..++..-..+|.+...+..|+.=.......+ ..-...|..-+.+-...|...
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence            46889999999999998877653 3378888888889999999888877666665543 222344555555555667777


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 015811          280 RVKELFVSMESMGCKHD  296 (400)
Q Consensus       280 ~a~~~~~~~~~~~~~~~  296 (400)
                      +|.+-++...+.  .|+
T Consensus       183 EAKkD~E~vL~L--EP~  197 (536)
T KOG4648|consen  183 EAKKDCETVLAL--EPK  197 (536)
T ss_pred             HHHHhHHHHHhh--Ccc
Confidence            777777777765  455

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=86.06  E-value=25  Score=31.57  Aligned_cols=181  Identities=13%  Similarity=0.147  Sum_probs=116.8

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh
Q 015811           78 APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT  157 (400)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  157 (400)
                      ..|.....+++..+.....+.-.+.+-.+|...|  .+-..|..++.+|... ..+.-..+++++.+..        -+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--------fnD  131 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--------FND  131 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--------chh
Confidence            3466677788888888888888888888888775  4667788888888877 5667778888777643        333


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcccHH
Q 015811          158 VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP--N---VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-GVQPNVVSSN  231 (400)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~  231 (400)
                      .....-+..+...++.+.+..+|.++...-++.  +   ...|..+...  -..+.+....+..++... |...-...+.
T Consensus       132 vv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q  209 (711)
T COG1747         132 VVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQ  209 (711)
T ss_pred             HHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence            444444444444477788888888776542210  1   1234444432  135667777777766654 3333445556


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811          232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGF  272 (400)
Q Consensus       232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  272 (400)
                      .+-.-|....++.+|++++..+.+.+ ..|...-..++..+
T Consensus       210 dv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         210 DVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             HHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            66677788888888888888887765 44555555555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.00  E-value=2.6  Score=21.28  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILR   74 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~   74 (400)
                      +|..+...+...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445555556666666666666665554

...

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=85.85  E-value=18  Score=29.63  Aligned_cols=128  Identities=11%  Similarity=-0.025  Sum_probs=86.5

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CCC-------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSI-----GL-FPD-------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA   78 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   78 (400)
                      .....-.+.+.-..||..|++.-++-.+.     +. .+.       ......-|++++..+++.+++.+.-+..+..-+
T Consensus        36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk  115 (309)
T PF07163_consen   36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK  115 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence            34444555666778999999888876432     01 111       123445689999999999998877666554323


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----hcCChHHHHHHH
Q 015811           79 PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC-----RTGHTIVALNLF  139 (400)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~  139 (400)
                      ....+...=|-.|.+.+.+..+.++-....+.--..+...|..++..|.     =.|.+++|.++.
T Consensus       116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            3344556666778899999999998888876522334445776666554     479999999987

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PRK09687 putative lyase; Provisional

Probab=85.58  E-value=20  Score=29.86  Aligned_cols=17  Identities=18%  Similarity=0.089  Sum_probs=7.4

Q ss_pred             cHHHHHHHHHHHHcCCC
Q 015811          261 NAFTYNTLMDGFCLTGK  277 (400)
Q Consensus       261 ~~~~~~~l~~~~~~~~~  277 (400)
                      +..+-...+.++.+.++
T Consensus       205 ~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        205 NEEIRIEAIIGLALRKD  221 (280)
T ss_pred             ChHHHHHHHHHHHccCC
Confidence            33344444444444444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.84  E-value=21  Score=29.49  Aligned_cols=63  Identities=6%  Similarity=0.020  Sum_probs=36.5

Q ss_pred             CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811          259 RPNAFTYNTLMDGFCLTGKINRVKELFVSMESM-GCKHDDFSYNILINGYCKNKEVEEALSLYN  321 (400)
Q Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  321 (400)
                      .++..+...++..++..+++....++|...... +...|...|..++......|+..-...+.+
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            455555566666666666666666666655443 334455566666666666666555555444

>PRK09687 putative lyase; Provisional

Probab=84.81  E-value=21  Score=29.64  Aligned_cols=235  Identities=10%  Similarity=-0.033  Sum_probs=146.4

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCChhh
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI----VEAAALFTKLKAFGCEPNVIT  118 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~  118 (400)
                      .+|.......+.++...|.. .+...+..+...   +|...-...+.++...|+.    .++...+..+...  .++..+
T Consensus        34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V  107 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV  107 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence            46777777777788777753 344444445443   3566666677777777763    4677777776443  566666


Q ss_pred             HHHHHHHHHhcCCh-----HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 015811          119 YNTLINGLCRTGHT-----IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVV  193 (400)
Q Consensus       119 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  193 (400)
                      -...+.++...+..     ..+...+.....         .++..+-...+.++.+.++ ..+...+-.+.+.   ++..
T Consensus       108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---------D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~  174 (280)
T PRK09687        108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---------DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGD  174 (280)
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHhh---------CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHH
Confidence            66666666655422     233444443332         3455666677777877776 4566666666643   4555


Q ss_pred             hHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 015811          194 TYTSLIHGFCHAN-DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGF  272 (400)
Q Consensus       194 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  272 (400)
                      .-...+.++.+.+ +...+...+..+..   .++..+-...+.++.+.++. .+...+-...+.+   +  .....+.++
T Consensus       175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~AL  245 (280)
T PRK09687        175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAA  245 (280)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHH
Confidence            5556666666543 24466666666664   34667777788888888884 5666665555543   2  234677788


Q ss_pred             HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811          273 CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC  308 (400)
Q Consensus       273 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (400)
                      ...|+. +|...+..+.+.  .||...-...+.++.
T Consensus       246 g~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        246 GELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            888885 688888888764  347766666666554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=84.73  E-value=24  Score=30.11  Aligned_cols=139  Identities=12%  Similarity=-0.009  Sum_probs=96.4

Q ss_pred             CCCCCcchHHHHHHHHHccCC------------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKH------------YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRIL   73 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   73 (400)
                      ..|.|+.+|-.++..--..-.            .+.-+.+++++++.+ +.+...+..++..+.+..+.+...+.++.++
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l   92 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELL   92 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            467889999888865433221            456678899988875 5678888999999999999999999999999


Q ss_pred             hccCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc------CC----CCChh-------hHHHHHHHHHhcCChH
Q 015811           74 RSCFAPNVVTFTSLIKGLCA---ESRIVEAAALFTKLKAF------GC----EPNVI-------TYNTLINGLCRTGHTI  133 (400)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~~-------~~~~l~~~~~~~~~~~  133 (400)
                      ...+ -+...|...+.....   .-.+.....+|.+..+.      +.    .+...       .+..+...+...|..+
T Consensus        93 ~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E  171 (321)
T PF08424_consen   93 FKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE  171 (321)
T ss_pred             HHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence            8743 377788888776554   23456666666554421      11    01111       2333344455789999


Q ss_pred             HHHHHHHHHHcCC
Q 015811          134 VALNLFKEMTNGN  146 (400)
Q Consensus       134 ~a~~~~~~~~~~~  146 (400)
                      .|..+++.+.+-+
T Consensus       172 ~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  172 RAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=84.36  E-value=33  Score=31.42  Aligned_cols=96  Identities=8%  Similarity=0.040  Sum_probs=71.7

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhhHHHHHHHHHhc-cCC-ccHHHHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFC-KMGQVSLGFVIFGRILRS-CFA-PNVVTFTSLIKG   90 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~   90 (400)
                      |......=.+.|..+.+.++|++... |++.+...|...+..+. ..|+.+.....|+..... |.. .+...|...|..
T Consensus        82 W~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~  160 (577)
T KOG1258|consen   82 WKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF  160 (577)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence            44445555678899999999999875 56778888888776554 457777888888887763 211 255678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 015811           91 LCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~  110 (400)
                      -..++++.....++++.++.
T Consensus       161 en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  161 ENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HhccccHHHHHHHHHHHHhh
Confidence            88889999999999998864

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.46  E-value=2.3  Score=26.87  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=26.3

Q ss_pred             hcCCHHHHHHHHhhhhhCCCCcC--HHHHHHHHHHHhccchHHHHHHHH
Q 015811          309 KNKEVEEALSLYNELPFKGIKPT--VVTYNTLFHGLFEIRQAERALKLF  355 (400)
Q Consensus       309 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~  355 (400)
                      ..++.++|+..|+...+.-..|.  -.++..++.+++..|++.+++++-
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666667777766665422221  124445566666666666666543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=82.83  E-value=25  Score=28.91  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHH-------HHHHHHhcCCchhHHHHH----HHHHhCCCCCcHHHHH
Q 015811          198 LIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNV-------IMNELCKNGKMDNASRLL----DLMVQCDVRPNAFTYN  266 (400)
Q Consensus       198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~  266 (400)
                      +.+-..+.+++++|+..+.++...|+..+..+.+.       +...|...|+.....++.    +.|.+..-+.......
T Consensus         9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir   88 (421)
T COG5159           9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR   88 (421)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH


Q ss_pred             HHHHHHHcCCC-hHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          267 TLMDGFCLTGK-INRVKELFVSMESMGCKHDDFSY-----NILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       267 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      .++..+....+ ++....+.....+..........     ..++..+.+.|.+.+|+.+...+..
T Consensus        89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~  153 (421)
T COG5159          89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH  153 (421)
T ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.36  E-value=6.2  Score=25.03  Aligned_cols=45  Identities=11%  Similarity=0.047  Sum_probs=19.4

Q ss_pred             cCCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 015811          274 LTGKINRVKELFVSMESMGCKHDD--FSYNILINGYCKNKEVEEALS  318 (400)
Q Consensus       274 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~  318 (400)
                      ...+.++|...|....+.-..+..  .++..++.+|+..|++.+++.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555443211111  133444445555555554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.58  E-value=31  Score=31.77  Aligned_cols=84  Identities=18%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +..-|..|.++....+++..|.+.|.....         |..|+-.+...|+.+....+-....+.| .     .|....
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~-----~N~AF~  729 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K-----NNLAFL  729 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c-----cchHHH
Confidence            566789999999999999999998877543         4567777778888776666666666655 2     233445


Q ss_pred             HHHhcCChHHHHHHHHHHH
Q 015811          125 GLCRTGHTIVALNLFKEMT  143 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~  143 (400)
                      +|...|+++++++++..-.
T Consensus       730 ~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  730 AYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             HHHHcCCHHHHHHHHHhcC
Confidence            6677899999999887643

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.85  E-value=14  Score=24.75  Aligned_cols=86  Identities=13%  Similarity=0.143  Sum_probs=46.7

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT  105 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  105 (400)
                      ..++|..+-+-+...+-. ...+-..-+..+...|+++.|..+.+..    ..||...|.+|-..  +.|..+++..-+.
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~   92 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN   92 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence            356666666666543311 1222222233456677777777766554    25676666665443  5666666666666


Q ss_pred             HHHHcCCCCChhhH
Q 015811          106 KLKAFGCEPNVITY  119 (400)
Q Consensus       106 ~~~~~~~~~~~~~~  119 (400)
                      ++...| .|....|
T Consensus        93 rla~sg-~p~lq~F  105 (115)
T TIGR02508        93 RLAASG-DPRLQTF  105 (115)
T ss_pred             HHHhCC-CHHHHHH
Confidence            666665 4444433

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=80.75  E-value=53  Score=31.27  Aligned_cols=78  Identities=9%  Similarity=0.029  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHH
Q 015811          173 VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDL  252 (400)
Q Consensus       173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  252 (400)
                      ..++...+.......  .+......-+....+.++++.+...+..|.... .....-..-+.+++...|+.++|...|+.
T Consensus       295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~  371 (644)
T PRK11619        295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQ  371 (644)
T ss_pred             CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444433221  233334444444556667766666666654321 22333444555665666777777777666


Q ss_pred             H
Q 015811          253 M  253 (400)
Q Consensus       253 ~  253 (400)
                      +
T Consensus       372 ~  372 (644)
T PRK11619        372 L  372 (644)
T ss_pred             H
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	400
4g24_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		9e-05
4g23_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		7e-04

>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 30  VLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFAP 79
            L L+      G+    Y Y++L+   C + +          +S GF IF +++     P
Sbjct: 45  ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103
Query: 80  NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLF 139
           N  TFT+  +   A+     A  +  ++KAFG +P + +Y   + G CR G    A  + 
Sbjct: 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163
Query: 140 KEM 142
             M
Sbjct: 164 AHM 166

>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 30  VLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFAP 79
            L L+      G+    Y Y++L+   C + +          +S GF IF + +     P
Sbjct: 45  ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVP 103
Query: 80  NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL 138
           N  TFT+  +   A+     A     + KAFG +P + +Y   + G CR G    A  +
Sbjct: 104 NEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-20
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 93.0 bits (229), Expect = 2e-20
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 12/300 (4%)

Query: 79  PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL 138
           P       L++    +  +    A   +                      T    +A +L
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 139 FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL 198
                    +  +        Y+ ++ G  ++G   +   +   +K   L P++++Y + 
Sbjct: 150 LVVHHGQRQKRKL---LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206

Query: 199 IHGFCHANDWNEA-KGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD 257
           +      +      +  L +M  +G++   + + V+++E  +   +    ++        
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266

Query: 258 VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEAL 317
             P     + L+             +L + ++++ C  +    ++ +        VE+  
Sbjct: 267 QLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ-LHMELASRVCVVSVEKPT 325

Query: 318 SLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL 377
               E+             TL     +     RAL+        +V     +   F+  L
Sbjct: 326 LPSKEVKHARKT-----LKTLRDQWEK--ALCRALRETKNRLEREVYEGRFSLYPFLCLL 378

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 77.9 bits (190), Expect = 1e-15
 Identities = 22/209 (10%), Positives = 57/209 (27%), Gaps = 10/209 (4%)

Query: 6   PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLG 65
           P  P       LL         D   +   + +   L            C     Q+ L 
Sbjct: 87  PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146

Query: 66  ---FVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL 122
               V+     +      +  + +++ G   +    E   +   +K  G  P++++Y   
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206

Query: 123 INGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFL 181
           +  + R            ++M+          K   +  ++++    +   +    ++  
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEG------LKLQALFTAVLLSEEDRATVLKAVHKVKP 260

Query: 182 QMKYENLNPNVVTYTSLIHGFCHANDWNE 210
                   P  V  + L+      +    
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 62.5 bits (150), Expect = 1e-10
 Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 3/105 (2%)

Query: 288 MESMGCKHDDFSYNILINGYCKNKEVEEALSL---YNELPFKGIKPTVVTYNTLFHGLFE 344
                                   ++  A  L   ++    K    T+  YN +  G   
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 345 IRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYAR 389
               +  + +   ++   +  D  +Y   +  +  + Q   T  R
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 60.6 bits (145), Expect = 5e-10
 Identities = 14/144 (9%), Positives = 44/144 (30%), Gaps = 1/144 (0%)

Query: 2   RHMHPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ 61
           +        +  +N ++   A+   +  ++ +   +   GL PDL +Y+  + C  +  Q
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

Query: 62  VSLGFV-IFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYN 120
            +        ++ +       +    L+      + +     +          P  +  +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275

Query: 121 TLINGLCRTGHTIVALNLFKEMTN 144
            L+  +      +    L   +  
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKT 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 65/404 (16%), Positives = 130/404 (32%), Gaps = 106/404 (26%)

Query: 47  YTYSILINCF---------CKMGQVSLGFVI----FGRILRSCFAPNVVTFTSLIKG-LC 92
           Y Y  +++ F         CK  Q     ++       I+ S    + V+ T  +   L 
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLL 72

Query: 93  AE-SRIVEAAA----------LFTKLKAFGCEPNVIT--YNTLINGLCRTGHTIVALN-- 137
           ++   +V+             L + +K    +P+++T  Y    + L          N  
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 138 ---LFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK---AKELFLQMKYENLNPN 191
               + ++     E+    +P     +++IDG+   G   K   A ++ L  K +     
Sbjct: 133 RLQPYLKLRQALLEL----RPAK---NVLIDGVLGSG---KTWVALDVCLSYKVQCKMDF 182

Query: 192 VVTYTSLIHGFCHAND------WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN 245
            + + +L    C++ +            LL ++       +  SSN+ +     +     
Sbjct: 183 KIFWLNL--KNCNSPETVLEMLQK----LLYQIDPNWTSRSDHSSNIKLR---IHSIQAE 233

Query: 246 ASRLL-------DLMVQCDVRP----NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK 294
             RLL        L+V  +V+     NAF      +  C      R K++   + +    
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAF------NLSCKILLTTRFKQVTDFLSAATTT 287

Query: 295 HDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLF--EIR------ 346
           H   S +          EV+  L  Y +   + +   V+T N     +    IR      
Sbjct: 288 H--ISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 347 ---------QAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRP 381
                    +    ++  + +       +   YR   D L V P
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL------EPAEYRKMFDRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.74
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.73
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.71
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.71
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.7
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.69
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.63
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.58
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.58
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.55
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.52
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.45
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.4
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.39
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.3
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.25
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.25
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.22
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.22
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.21
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.14
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.01
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.97
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.97
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.97
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.96
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.95
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.95
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.93
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.9
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.85
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.84
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.83
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.82
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.72
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.71
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.67
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.63
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.43
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.42
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.39
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.38
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.34
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.31
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.22
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.19
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.12
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.01
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.95
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.91
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.89
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.73
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.36
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.35
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.28
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.23
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.21
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.21
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.18
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.09
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.74
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.69
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.57
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.24
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.22
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.22
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.21
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.13
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.05
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.96
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.87
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.18
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.06
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.83
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.07
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.04
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.82
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.7
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.66
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.59
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.49
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.37
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.55
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.34
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.82
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	90.54
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.07
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.82
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.76
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.71
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.17
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.06
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.17
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.86
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.69
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.85
2p58_C	116	Putative type III secretion protein YSCG; type III	85.58
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.69
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.89

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-36  Score=277.14  Aligned_cols=371  Identities=12%  Similarity=0.060  Sum_probs=310.7

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHh-C--------------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNS-I--------------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRI   72 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   72 (400)
                      |+++.+++.++..|.+.|++++|+++|+++.. .              |.+++..+|+.++.+|.+.|++++|.++|+++
T Consensus       147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  226 (597)
T 2xpi_A          147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA  226 (597)
T ss_dssp             GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56777888888888888888888888874321 1              22334778888888888888888888888888


Q ss_pred             HhccCCccHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 015811           73 LRSCFAPNVVTFTSL--------------------------------------IKGLCAESRIVEAAALFTKLKAFGCEP  114 (400)
Q Consensus        73 ~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~  114 (400)
                      .+.++. +...+..+                                      +..|.+.|++++|.++|+++.+.  ++
T Consensus       227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~  303 (597)
T 2xpi_A          227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK  303 (597)
T ss_dssp             HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred             HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence            776422 23332222                                      44555677888888888887765  57


Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh
Q 015811          115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT  194 (400)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  194 (400)
                      +..+++.++.+|.+.|++++|+++|+++...+       +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  375 (597)
T 2xpi_A          304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT  375 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence            88899999999999999999999999998765       5578889999999999999999999999998653 457889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL  274 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  274 (400)
                      +..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+
T Consensus       376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  453 (597)
T 2xpi_A          376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ  453 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            9999999999999999999999998864 4467789999999999999999999999998875 5678899999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC----CCCcC--HHHHHHHHHHHhccchH
Q 015811          275 TGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK----GIKPT--VVTYNTLFHGLFEIRQA  348 (400)
Q Consensus       275 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~  348 (400)
                      .|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.    +..|+  ..+|..++.+|.+.|++
T Consensus       454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  532 (597)
T 2xpi_A          454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY  532 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence            999999999999998875 568899999999999999999999999999875    66777  78999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          349 ERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      ++|.+.++++.+.+ +.+..+|..+..+|...|++++|...++..
T Consensus       533 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  576 (597)
T 2xpi_A          533 DAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHES  576 (597)
T ss_dssp             HHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999998764 347889999999999999999998877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-35  Score=270.57  Aligned_cols=376  Identities=10%  Similarity=-0.018  Sum_probs=321.4

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      +++..|+.++..|.+.|++++|+.+|+++...  .|+..++..++.+|.+.|++++|..+|+.+...  +++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  157 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA  157 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence            57788999999999999999999999999864  578899999999999999999999999988654  67888999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc---
Q 015811           89 KGLCAESRIVEAAALFTKLKAF---------------GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG---  150 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---  150 (400)
                      .+|.+.|++++|.++|+++...               +.+++..+|+.++.+|.+.|++++|+++|+++...++...   
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  237 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF  237 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            9999999999999999853211               1223578899999999999999999999999876543200   


Q ss_pred             -------------------------------------------------------------ccccCChhhHHHHHHHHHh
Q 015811          151 -------------------------------------------------------------VVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus       151 -------------------------------------------------------------~~~~~~~~~~~~l~~~~~~  169 (400)
                                                                                   ...+++..+++.++..+.+
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence                                                                         0013677888889999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRL  249 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  249 (400)
                      .|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++
T Consensus       318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  395 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY  395 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999998765 3377888999999999999999999999998654 55778889999999999999999999


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCC
Q 015811          250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIK  329 (400)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  329 (400)
                      |+.+.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.+ +.+..+|..++.+|.+.|++++|..+|+++.+.. +
T Consensus       396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~  472 (597)
T 2xpi_A          396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q  472 (597)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            99998764 4567899999999999999999999999998875 5678899999999999999999999999998764 3


Q ss_pred             cCHHHHHHHHHHHhccchHHHHHHHHHHHhhC----CCCCC--hhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQGN----DVAAD--TCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      .+..+|..++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|++++|...++.+
T Consensus       473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            37889999999999999999999999999865    66777  678999999999999999998887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.4e-30  Score=222.41  Aligned_cols=361  Identities=13%  Similarity=0.017  Sum_probs=308.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR   96 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   96 (400)
                      +...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++...|+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            4567788999999999999988765 4567788888888999999999999999988864 4578889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHH
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKA  176 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  176 (400)
                      +++|...|+++.+.. +.+..+|..+..++...|++++|++.|+++....       +.+...+..+...+...|++++|
T Consensus        83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A  154 (388)
T 1w3b_A           83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------PDLYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHH
Confidence            999999999998874 4456678999999999999999999999998754       44566778888889999999999


Q ss_pred             HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811          177 KELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                      .+.|+++.+.. +.+..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+.+..+.
T Consensus       155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999998764 3356888999999999999999999999998874 345677888889999999999999999998876


Q ss_pred             CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHH
Q 015811          257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYN  336 (400)
Q Consensus       257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~  336 (400)
                      . +.+..++..+...+...|++++|...++++.+.+ +.+..+|..+..++.+.|++++|...++++.+.. +.+..++.
T Consensus       233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  309 (388)
T 1w3b_A          233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN  309 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence            5 4467888899999999999999999999998875 4567889999999999999999999999998763 45788899


Q ss_pred             HHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          337 TLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      .+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++..
T Consensus       310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  365 (388)
T 1w3b_A          310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999998742 335678889999999999999998877654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=9.4e-33  Score=243.43  Aligned_cols=185  Identities=15%  Similarity=0.166  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---------chhHHHHHHHHHhCCCCCcHHHH
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK---------MDNASRLLDLMVQCDVRPNAFTY  265 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~  265 (400)
                      ++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+.         ++.|.++|++|.+.|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            444455555555555555555555555555555555555555544332         34455555555555555555555


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhcc
Q 015811          266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEI  345 (400)
Q Consensus       266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  345 (400)
                      +.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             chHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 015811          346 RQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV  379 (400)
Q Consensus       346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (400)
                      |+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            5555555555555555555555555555555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.8e-29  Score=219.10  Aligned_cols=358  Identities=15%  Similarity=0.062  Sum_probs=311.7

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...|..
T Consensus        29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  106 (388)
T 1w3b_A           29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYIN  106 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHH
Confidence            45677888889999999999999999999988765 6688999999999999999999999999999874 336678999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG  166 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (400)
                      +..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++....       +.+..+|..+..+
T Consensus       107 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~  178 (388)
T 1w3b_A          107 LAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-------PNFAVAWSNLGCV  178 (388)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence            9999999999999999999999874 4455677788889999999999999999998864       5567899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811          167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA  246 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  246 (400)
                      +...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+..++..+..++...|++++|
T Consensus       179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  256 (388)
T 1w3b_A          179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999874 3356788899999999999999999999998864 34577888999999999999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ...++.+.+.+ +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus       257 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          257 IDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999875 4567889999999999999999999999999875 678899999999999999999999999999876


Q ss_pred             CCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhhcCC
Q 015811          327 GIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAA-DTCTYRTFIDGLCVRP  381 (400)
Q Consensus       327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  381 (400)
                      . +.+..++..+...+.+.|++++|...|+++.+.  .| +...+..+...+...|
T Consensus       335 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          335 F-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence            3 336788999999999999999999999999874  34 4455666666555444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.3e-32  Score=240.98  Aligned_cols=207  Identities=14%  Similarity=0.135  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHcCCCcccccccCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-----
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPN-TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND-----  207 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----  207 (400)
                      .+..+.+++.+.+      .... ...++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.     
T Consensus         8 ~~e~L~~~~~~k~------~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~   81 (501)
T 4g26_A            8 PSENLSRKAKKKA------IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS   81 (501)
T ss_dssp             ----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred             hHHHHHHHHHHhc------ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh
Confidence            3455556666555      3333 346888999999999999999999999999999999999999999987654     


Q ss_pred             ----HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHH
Q 015811          208 ----WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKE  283 (400)
Q Consensus       208 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  283 (400)
                          .+.|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus        82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A           82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence                6889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccc
Q 015811          284 LFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIR  346 (400)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  346 (400)
                      +|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus       162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999999999999887643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=3e-26  Score=202.85  Aligned_cols=366  Identities=12%  Similarity=0.056  Sum_probs=296.2

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      ..|.++.+|..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++.
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~   98 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL   98 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence            456788899999999999999999999999998764 5678999999999999999999999999999875 34688899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHHHcCCCccc
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNV---ITYNTL------------INGLCRTGHTIVALNLFKEMTNGNGEIG  150 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~  150 (400)
                      .+..++...|++++|...|+++.+.. +.+.   ..+..+            ...+...|++++|+..++++....    
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----  173 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----  173 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            99999999999999999999999864 3333   555555            444889999999999999998764    


Q ss_pred             ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccH
Q 015811          151 VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSS  230 (400)
Q Consensus       151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  230 (400)
                         +.+...+..+..++...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.... +.+...+
T Consensus       174 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  248 (450)
T 2y4t_A          174 ---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCF  248 (450)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             ---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHH
Confidence               5678889999999999999999999999998763 3467899999999999999999999999998763 2233444


Q ss_pred             HHH------------HHHHHhcCCchhHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC
Q 015811          231 NVI------------MNELCKNGKMDNASRLLDLMVQCDVRPN-----AFTYNTLMDGFCLTGKINRVKELFVSMESMGC  293 (400)
Q Consensus       231 ~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  293 (400)
                      ..+            ...+...|++++|...++.+.+..  |+     ...+..+...+.+.|++++|...++++.+.. 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-  325 (450)
T 2y4t_A          249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-  325 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            444            788999999999999999998854  33     3478888999999999999999999998875 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-CHHHHHHHHHH------------Hhccc-----hHHHHHHHH
Q 015811          294 KHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP-TVVTYNTLFHG------------LFEIR-----QAERALKLF  355 (400)
Q Consensus       294 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~~-----~~~~a~~~~  355 (400)
                      +.+...|..+..+|...|++++|...++++.+.  .| +...+..+..+            |...|     +.+++.+.+
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y  403 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY  403 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHH
Confidence            557899999999999999999999999999876  44 45555555522            33333     556778888


Q ss_pred             HH-HhhCC--CCCC-------hhhHHHHHHHhhcCCcchhhHh
Q 015811          356 VE-MQGND--VAAD-------TCTYRTFIDGLCVRPQVRFTYA  388 (400)
Q Consensus       356 ~~-~~~~~--~~~~-------~~~~~~l~~~~~~~g~~~~a~~  388 (400)
                      ++ ..+..  ..|+       ...+..+..+|...|+.+....
T Consensus       404 ~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~  446 (450)
T 2y4t_A          404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK  446 (450)
T ss_dssp             HHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred             HHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence            76 33321  1122       2367788888888888776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-26  Score=206.25  Aligned_cols=373  Identities=13%  Similarity=-0.019  Sum_probs=308.9

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      +..|......+.+.|++++|+..|+++.+.+  |+..+|..+..++...|++++|.+.++++++.+ +.+..++..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            4567888899999999999999999999875  799999999999999999999999999999875 3477889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCC-------------------------------------------------------
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPN-------------------------------------------------------  115 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------------------------  115 (400)
                      +...|++++|...|+++.+.+ +++                                                       
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            999999999999999998765 211                                                       


Q ss_pred             ------------------------hhhHHHHHHHHHh---cCChHHHHHHHHHHHc-----C--CCcccccccCChhhHH
Q 015811          116 ------------------------VITYNTLINGLCR---TGHTIVALNLFKEMTN-----G--NGEIGVVFKPNTVTYS  161 (400)
Q Consensus       116 ------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~~  161 (400)
                                              ...+......+..   .|++++|+..++++..     .  .+......+.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                    2222223333333   7999999999999887     3  1100000023456788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (400)
                      .+..++...|++++|...++.+.+...  +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            889999999999999999999998753  38888899999999999999999999998874 446778889999999999


Q ss_pred             CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811          242 KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN  321 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  321 (400)
                      ++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999875 4567788999999999999999999999998875 4567888999999999999999999999


Q ss_pred             hhhhCCCC-cC----HHHHHHHHHHHhc---cchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          322 ELPFKGIK-PT----VVTYNTLFHGLFE---IRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       322 ~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      ++.+.... ++    ...+..+...+..   .|++++|...++++.+.. +.+...+..+...|...|++++|...++..
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            98764211 11    3478888999999   999999999999998753 335677889999999999999998877643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.4e-24  Score=192.19  Aligned_cols=327  Identities=11%  Similarity=-0.001  Sum_probs=267.3

Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           31 LSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        31 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      ...+.++.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus        12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            33344444332 4567889999999999999999999999999864 447889999999999999999999999999988


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh---hhHHHH------------HHHHHhcCChHH
Q 015811          111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT---VTYSII------------IDGLCKEGFVDK  175 (400)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~  175 (400)
                      + +.+..++..+..++...|++++|...|+++....       +.+.   ..+..+            ...+...|++++
T Consensus        90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  161 (450)
T 2y4t_A           90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA  161 (450)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            6 5567889999999999999999999999999865       3344   555555            445889999999


Q ss_pred             HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          176 AKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      |...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...++.+.+
T Consensus       162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998764 3477889999999999999999999999998764 45678899999999999999999999999987


Q ss_pred             CCCCCcHHHHHHH------------HHHHHcCCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 015811          256 CDVRPNAFTYNTL------------MDGFCLTGKINRVKELFVSMESMGCKHD----DFSYNILINGYCKNKEVEEALSL  319 (400)
Q Consensus       256 ~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~  319 (400)
                      .. +.+...+..+            +..+...|++++|...++++.+.. +.+    ...+..+..++.+.|++++|...
T Consensus       240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  317 (450)
T 2y4t_A          240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRV  317 (450)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            64 3344555444            788999999999999999998864 223    44788899999999999999999


Q ss_pred             HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC-hhhHHHHH
Q 015811          320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD-TCTYRTFI  374 (400)
Q Consensus       320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~  374 (400)
                      ++++.+.. +.+...|..+..+|...|++++|...++++.+.  .|+ ...+..+.
T Consensus       318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            99988763 336889999999999999999999999999874  454 44455554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=1e-23  Score=190.93  Aligned_cols=365  Identities=9%  Similarity=0.009  Sum_probs=293.1

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.++++++.+ +.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4678888999999999999999999998876 5688999999999999999999999999999875 3478889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChh-----------------------------------------------------
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVI-----------------------------------------------------  117 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------------------------------  117 (400)
                      +...|++++|...|+.+. .  .|+..                                                     
T Consensus       103 ~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLS-L--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHh-c--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            999999999999996431 1  11110                                                     


Q ss_pred             ----------------hHHHHHHHHHh--------cCChHHHHHHHHHHHcCCCcccccccCCh-------hhHHHHHHH
Q 015811          118 ----------------TYNTLINGLCR--------TGHTIVALNLFKEMTNGNGEIGVVFKPNT-------VTYSIIIDG  166 (400)
Q Consensus       118 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~  166 (400)
                                      ....+...+..        .|++++|+.+++++....       +.+.       .++..+...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~~  252 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGIF  252 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHHH
Confidence                            11111111111        247889999999998865       2332       346677788


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811          167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA  246 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  246 (400)
                      +...|++++|...++.+.+..  |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence            889999999999999999864  567888899999999999999999999999875 44677899999999999999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus       330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            99999998875 4457788999999999999999999999998875 556778999999999999999999999998764


Q ss_pred             C-----CCcCHHHHHHHHHHHhcc----------chHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          327 G-----IKPTVVTYNTLFHGLFEI----------RQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       327 ~-----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      .     .......+......+...          |++++|...|++..+.. +.+...+..+...|...|++++|...++
T Consensus       408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (537)
T 3fp2_A          408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE  486 (537)
T ss_dssp             HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            1     111223344445667777          99999999999998753 2356788999999999999999988776


Q ss_pred             CC
Q 015811          392 GN  393 (400)
Q Consensus       392 ~~  393 (400)
                      ..
T Consensus       487 ~a  488 (537)
T 3fp2_A          487 DS  488 (537)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.3e-24  Score=190.81  Aligned_cols=345  Identities=10%  Similarity=-0.051  Sum_probs=287.4

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc---------
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP---------   79 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------   79 (400)
                      |++.+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++...|++++|...|+++.+.+...         
T Consensus        37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  115 (514)
T 2gw1_A           37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE  115 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred             ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence            478899999999999999999999999999876 5578899999999999999999999999998765311         


Q ss_pred             ---------------------------------------------------------------------cHHHHHHHHHH
Q 015811           80 ---------------------------------------------------------------------NVVTFTSLIKG   90 (400)
Q Consensus        80 ---------------------------------------------------------------------~~~~~~~l~~~   90 (400)
                                                                                           +...+......
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (514)
T 2gw1_A          116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS  195 (514)
T ss_dssp             HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence                                                                                 12233333333


Q ss_pred             HHh---cCCHHHHHHHHHHHHH-----cCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811           91 LCA---ESRIVEAAALFTKLKA-----FGC--------EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK  154 (400)
Q Consensus        91 ~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  154 (400)
                      +..   .|++++|..+|+++.+     ...        +.+..++..+...+...|++++|...++++....        
T Consensus       196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------  267 (514)
T 2gw1_A          196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------  267 (514)
T ss_dssp             HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------
T ss_pred             HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------
Confidence            443   8999999999999987     311        2234577888899999999999999999998864        


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811          155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM  234 (400)
Q Consensus       155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  234 (400)
                      |+...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus       268 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  345 (514)
T 2gw1_A          268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLA  345 (514)
T ss_dssp             CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHH
Confidence            338888999999999999999999999998764 3467788999999999999999999999999875 44677888899


Q ss_pred             HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHh
Q 015811          235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK-HD----DFSYNILINGYCK  309 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~  309 (400)
                      ..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... ++    ...+..+..++..
T Consensus       346 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          346 CLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998864 456778899999999999999999999999765311 11    3388899999999


Q ss_pred             ---cCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh
Q 015811          310 ---NKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC  368 (400)
Q Consensus       310 ---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  368 (400)
                         .|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.  .|+..
T Consensus       425 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~  483 (514)
T 2gw1_A          425 NPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME  483 (514)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred             hhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence               999999999999998763 336778888999999999999999999999874  44443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=1.6e-22  Score=173.29  Aligned_cols=303  Identities=13%  Similarity=0.054  Sum_probs=217.3

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            45678889999999999999999999998865 5578899999999999999999999999999875 336788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCC---CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCE---PNVITYNTL------------INGLCRTGHTIVALNLFKEMTNGNGEIGVVFK  154 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  154 (400)
                      ++...|++++|...++++.+.. +   .+...+..+            ...+...|++++|+..++++....       +
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~  151 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------V  151 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------C
Confidence            9999999999999999998763 2   244444444            467778888888888888887754       4


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHH---
Q 015811          155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSN---  231 (400)
Q Consensus       155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---  231 (400)
                      .+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.   
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (359)
T 3ieg_A          152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK  229 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH
Confidence            566777788888888888888888888887653 3456777778888888888888888888877653 22222222   


Q ss_pred             ---------HHHHHHHhcCCchhHHHHHHHHHhCCCCCcH----HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHH
Q 015811          232 ---------VIMNELCKNGKMDNASRLLDLMVQCDVRPNA----FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDF  298 (400)
Q Consensus       232 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  298 (400)
                               .+...+...|++++|...++.+.+.. +.+.    ..+..+...+...|++++|...++++.+.. +.+..
T Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  307 (359)
T 3ieg_A          230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN  307 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence                     12444566666666666666665543 1122    123334555666666666666666665543 33555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      .+..+..++...|++++|...++++.+.
T Consensus       308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            6666666666666666666666666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=1e-21  Score=168.32  Aligned_cols=317  Identities=11%  Similarity=0.006  Sum_probs=262.8

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            45678888999999999999999999999875 3478889999999999999999999999999874 446788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCccccccc---CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCC
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFK---PNTVTYSII------------IDGLCKEGFVDKAKELFLQMKYENLN  189 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~  189 (400)
                      .+...|++++|...++++....       +   .+...+..+            ...+...|++++|.+.++.+.+.. +
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~  151 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V  151 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence            9999999999999999998864       2   344455444            578889999999999999998864 3


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHH---
Q 015811          190 PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYN---  266 (400)
Q Consensus       190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---  266 (400)
                      .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.   
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (359)
T 3ieg_A          152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK  229 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH
Confidence            467889999999999999999999999999874 5567888999999999999999999999998864 33344333   


Q ss_pred             ---------HHHHHHHcCCChHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811          267 ---------TLMDGFCLTGKINRVKELFVSMESMGCKHDDF----SYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV  333 (400)
Q Consensus       267 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  333 (400)
                               .+...+...|++++|...++++.+.. +.+..    .+..+..++...|++++|...+++..+.. +.+..
T Consensus       230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  307 (359)
T 3ieg_A          230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN  307 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence                     23667889999999999999998865 33332    35567889999999999999999998863 33778


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHh
Q 015811          334 TYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD-TCTYRTFIDGL  377 (400)
Q Consensus       334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  377 (400)
                      .+..+...+...|++++|...|++..+.  .|+ ...+..+..+.
T Consensus       308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence            8999999999999999999999999975  454 44455555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=1.4e-21  Score=176.92  Aligned_cols=341  Identities=10%  Similarity=0.017  Sum_probs=272.4

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc------
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN------   80 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------   80 (400)
                      .|.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+.+ .....+.      
T Consensus        55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~  132 (537)
T 3fp2_A           55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEP  132 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------C
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHH
Confidence            36788999999999999999999999999998876 557899999999999999999999999633 2211100      


Q ss_pred             -------------------------------HH------------------------------HHHHHHHHHH-------
Q 015811           81 -------------------------------VV------------------------------TFTSLIKGLC-------   92 (400)
Q Consensus        81 -------------------------------~~------------------------------~~~~l~~~~~-------   92 (400)
                                                     ..                              ....+...+.       
T Consensus       133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  212 (537)
T 3fp2_A          133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL  212 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence                                           00                              1111221211       


Q ss_pred             -hcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811           93 -AESRIVEAAALFTKLKAFGCEPNV-------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII  164 (400)
Q Consensus        93 -~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (400)
                       ..|++++|..+++++.+.. +.+.       .++..+...+...|++++|+..++++....        |+...+..+.
T Consensus       213 ~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~l~  283 (537)
T 3fp2_A          213 VANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--------PTPNSYIFLA  283 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CCchHHHHHH
Confidence             1247889999999998763 2222       346667788889999999999999998854        5588889999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      ..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~  361 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFT  361 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999998864 3467889999999999999999999999999875 445678889999999999999


Q ss_pred             hHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhc---------
Q 015811          245 NASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-----KHDDFSYNILINGYCKN---------  310 (400)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~---------  310 (400)
                      +|...++.+.+.. +.+...+..+...+...|++++|...++++.+...     ......+.....++...         
T Consensus       362 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  440 (537)
T 3fp2_A          362 ESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD  440 (537)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            9999999998875 55677889999999999999999999999876431     11122244556677777         


Q ss_pred             -CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811          311 -KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND  362 (400)
Q Consensus       311 -~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  362 (400)
                       |++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+..
T Consensus       441 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          441 EEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence             99999999999998763 3367888999999999999999999999998743

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.2e-21  Score=165.82  Aligned_cols=294  Identities=11%  Similarity=-0.001  Sum_probs=195.5

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      +.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            3455556666666666677777777777766653 2244555556666667777777777777776653 3455666666


Q ss_pred             HHHHHhcC-ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015811          123 INGLCRTG-HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG  201 (400)
Q Consensus       123 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  201 (400)
                      ...+...| ++++|...++++....       +.+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~  168 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE  168 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence            67777777 6777777777776654       3455666777777777777777777777776653 2234555666677


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC--------CCCcHHHHHHHHHHHH
Q 015811          202 FCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD--------VRPNAFTYNTLMDGFC  273 (400)
Q Consensus       202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~  273 (400)
                      +...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..        .+....++..+...+.
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR  247 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence            777777777777777776653 3345666677777777777777777777665531        1333567777888888


Q ss_pred             cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH-hccchHH
Q 015811          274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL-FEIRQAE  349 (400)
Q Consensus       274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~  349 (400)
                      ..|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus       248 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          248 KLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            8888888888888887764 4466777788888888888888888888877653 22566666666666 4555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=2.6e-21  Score=163.83  Aligned_cols=285  Identities=13%  Similarity=0.021  Sum_probs=159.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++....       +.+...
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~   92 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNPVS   92 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHH
Confidence            44455555555666666666666666665553 3344455555556666666666666666665543       334555


Q ss_pred             HHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 015811          160 YSIIIDGLCKEG-FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC  238 (400)
Q Consensus       160 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  238 (400)
                      +..+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence            566666666666 6666666666665442 2234555566666666666666666666665543 223444555556666


Q ss_pred             hcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhc
Q 015811          239 KNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG--------CKHDDFSYNILINGYCKN  310 (400)
Q Consensus       239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~  310 (400)
                      ..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..        .+.....+..+..++...
T Consensus       171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  249 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL  249 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence            6666666666666665543 3345555666666666666666666666654421        022234555666666666


Q ss_pred             CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 015811          311 KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGL  377 (400)
Q Consensus       311 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  377 (400)
                      |++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus       250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  314 (330)
T 3hym_B          250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI  314 (330)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence            66666666666655542 1244555555666666666666666666655432 11334444454444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=1.1e-18  Score=155.89  Aligned_cols=349  Identities=10%  Similarity=0.025  Sum_probs=291.2

Q ss_pred             CCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCcc
Q 015811            9 PPVSSFNILLGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPN   80 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~   80 (400)
                      .++.++..+...|..    .+++++|+..|++..+.|   +...+..+...|..    .++.++|.++|++..+.+   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            356777788888887    899999999999998864   67788889999998    899999999999998865   5


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCccccc
Q 015811           81 VVTFTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVV  152 (400)
Q Consensus        81 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  152 (400)
                      ...+..|...|..    .+++++|...|++..+.|   +...+..+...|..    .++.++|++.|++..+.+      
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------  181 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------  181 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------
Confidence            6677778888888    789999999999998875   56778888888887    789999999999988754      


Q ss_pred             ccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 015811          153 FKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQ  224 (400)
Q Consensus       153 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~  224 (400)
                         +...+..+...|..    .+++++|.++|++..+.+   +...+..+...|..    .+++++|..++++..+.+  
T Consensus       182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--  253 (490)
T 2xm6_A          182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--  253 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--
T ss_pred             ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence               56788888888887    899999999999998864   56677778888776    789999999999998765  


Q ss_pred             CCcccHHHHHHHHHh----cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhcCCCC
Q 015811          225 PNVVSSNVIMNELCK----NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT-----GKINRVKELFVSMESMGCKH  295 (400)
Q Consensus       225 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~  295 (400)
                       +...+..+...|..    .+++++|...|+...+.+   +...+..+...|...     +++++|...+++..+.+   
T Consensus       254 -~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---  326 (490)
T 2xm6_A          254 -NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---  326 (490)
T ss_dssp             -CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---
T ss_pred             -CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---
Confidence             45567777778887    899999999999998765   456777788888777     89999999999998875   


Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc----cchHHHHHHHHHHHhhCCCCCChh
Q 015811          296 DDFSYNILINGYCKNK---EVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE----IRQAERALKLFVEMQGNDVAADTC  368 (400)
Q Consensus       296 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  368 (400)
                      +...+..+...|...|   ++++|..+|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +..
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~  400 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSA  400 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHH
Confidence            5567778888887766   7899999999998863   67778888888877    799999999999998865   466


Q ss_pred             hHHHHHHHhhc----CCcchhhHhhhhCC
Q 015811          369 TYRTFIDGLCV----RPQVRFTYARRKGN  393 (400)
Q Consensus       369 ~~~~l~~~~~~----~g~~~~a~~~~~~~  393 (400)
                      .+..+...|..    .+++++|..+++..
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            77778888887    89999998877653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=1.8e-21  Score=167.53  Aligned_cols=303  Identities=13%  Similarity=0.036  Sum_probs=152.8

Q ss_pred             hcCChhhHHH-HHHHHHhccCC---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811           58 KMGQVSLGFV-IFGRILRSCFA---PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI  133 (400)
Q Consensus        58 ~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  133 (400)
                      ..|++++|.+ .+++.......   .+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            3466677776 66655443211   124456667777777777777777777777664 445666777777777777777


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKG  213 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  213 (400)
                      +|+..++++....       +.+..++..+..++...|++++|...++++...... +...+..+...       ..   
T Consensus       116 ~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~---  177 (368)
T 1fch_A          116 LAISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG---  177 (368)
T ss_dssp             HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------
T ss_pred             HHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh---
Confidence            7777777776654       445667777777777777777777777777665321 11111111000       00   


Q ss_pred             HHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811          214 LLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  292 (400)
                          .    ..+. ..+..+. .+...|++++|...++.+.+..... +..++..+...+...|++++|...++++.+..
T Consensus       178 ----~----~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          178 ----G----AGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             -----------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----h----hccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                0    0000 0000111 1224455555555555554432110 34455555555555555555555555555443


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCC--------
Q 015811          293 CKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVA--------  364 (400)
Q Consensus       293 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------  364 (400)
                       +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+.+.|++++|...|+++.+....        
T Consensus       248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence             3344555555555555555555555555554432 123445555555555555555555555554432100        


Q ss_pred             --CChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          365 --ADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       365 --~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                        ....+|..+..+|...|++++|....+
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence              013455555555666666665555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=5.7e-21  Score=164.34  Aligned_cols=291  Identities=11%  Similarity=0.033  Sum_probs=184.0

Q ss_pred             HHccCChhHHHH-HHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811           21 LAKNKHYDTVLS-LFKRLNSIGL-FP--DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR   96 (400)
Q Consensus        21 ~~~~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   96 (400)
                      +.-.|++++|++ .|++...... .|  +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            345678888888 8876654321 11  35678889999999999999999999999875 3477889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH--------------
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI--------------  162 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  162 (400)
                      +++|...|+++.+.. +.+..++..+...+...|++++|+..++++....       +.+...+..              
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-------PAYAHLVTPAEEGAGGAGLGPSK  185 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTTGGGCC---------------
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHhhhhcccHHH
Confidence            999999999999875 5578889999999999999999999999998865       222222221              


Q ss_pred             -HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811          163 -IIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN  240 (400)
Q Consensus       163 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (400)
                       .+..+...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus       186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  264 (368)
T 1fch_A          186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG  264 (368)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence             1222235566666666666665542111 34555666666666666666666666665542 22345555556666666


Q ss_pred             CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhc
Q 015811          241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH----------DDFSYNILINGYCKN  310 (400)
Q Consensus       241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~  310 (400)
                      |++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.....          ...+|..+..+|...
T Consensus       265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  343 (368)
T 1fch_A          265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML  343 (368)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence            66666666666655543 3345555556666666666666666666554432110          144555555566666


Q ss_pred             CCHHHHHHHHhh
Q 015811          311 KEVEEALSLYNE  322 (400)
Q Consensus       311 ~~~~~A~~~~~~  322 (400)
                      |++++|..++++
T Consensus       344 g~~~~A~~~~~~  355 (368)
T 1fch_A          344 GQSDAYGAADAR  355 (368)
T ss_dssp             TCGGGHHHHHTT
T ss_pred             CChHhHHHhHHH
Confidence            666665555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=2.7e-20  Score=159.90  Aligned_cols=278  Identities=11%  Similarity=-0.036  Sum_probs=137.5

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      +...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44556666666666666666666666666543 3455666666666666666666666666666553 224556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      ++...|++++|...++++.+.. +.+...+..+                               ......+..+...+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~  189 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNK-------------------------------KGSPGLTRRMSKSPVD  189 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-HHHHCC--------------------------------------------------C
T ss_pred             HHHccccHHHHHHHHHHHHHhC-ccchHHHhhh-------------------------------ccchHHHHHHHHHHhh
Confidence            6666666666666666665542 1111111111                               0011223333444444


Q ss_pred             cCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811          170 EGFVDKAKELFLQMKYENLN-PNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      .|++++|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|..
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  268 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVE  268 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            44444444444444443211 023444444444444444444444444444432 2233444445555555555555555


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 015811          249 LLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-----------KHDDFSYNILINGYCKNKEVEEAL  317 (400)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~  317 (400)
                      .++.+.+.. +.+..++..+..+|...|++++|...++++.+...           ..+...|..+..++...|+.+.+.
T Consensus       269 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  347 (365)
T 4eqf_A          269 AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ  347 (365)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence            555544432 22344555555555555555555555555543210           012456667777777777777777


Q ss_pred             HHHhhh
Q 015811          318 SLYNEL  323 (400)
Q Consensus       318 ~~~~~~  323 (400)
                      .+.++-
T Consensus       348 ~~~~~~  353 (365)
T 4eqf_A          348 AANLGD  353 (365)
T ss_dssp             HHHTTC
T ss_pred             HHHHhh
Confidence            766653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.87  E-value=6e-21  Score=164.01  Aligned_cols=265  Identities=10%  Similarity=-0.054  Sum_probs=179.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++....       +.+..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~  135 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------PNNLKA  135 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHH
Confidence            44557778888888888888888888888765 4567788888888888888888888888887754       455778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----------hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCc
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPN-----------VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PNV  227 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~  227 (400)
                      +..+..++...|++++|...++++.+..  |+           ...+..+...+...|++++|...++++.+.... .+.
T Consensus       136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  213 (365)
T 4eqf_A          136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP  213 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence            8888888888888888888888887642  22           122233466677777778888877777765321 145


Q ss_pred             ccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015811          228 VSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGY  307 (400)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  307 (400)
                      .++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+..+|
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence            667777777777777777777777776654 4456677777777777777777777777777654 44566777777777


Q ss_pred             HhcCCHHHHHHHHhhhhhCCCC-----------cCHHHHHHHHHHHhccchHHHHHHHHH
Q 015811          308 CKNKEVEEALSLYNELPFKGIK-----------PTVVTYNTLFHGLFEIRQAERALKLFV  356 (400)
Q Consensus       308 ~~~~~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~  356 (400)
                      ...|++++|...++++.+....           .+...|..+..++...|+.+.+..+.+
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            7777777777777776643100           023456666666666666666555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.87  E-value=1.5e-17  Score=148.52  Aligned_cols=321  Identities=14%  Similarity=0.056  Sum_probs=272.0

Q ss_pred             CcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCccH
Q 015811           10 PVSSFNILLGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPNV   81 (400)
Q Consensus        10 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~   81 (400)
                      ++.++..|...|..    .+++++|++.|++..+.|   +...+..+...|..    .+++++|...|++..+.+   +.
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  147 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD  147 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            45678888888988    899999999999998865   67788888888888    889999999999998875   56


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCcccccc
Q 015811           82 VTFTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVF  153 (400)
Q Consensus        82 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  153 (400)
                      ..+..+...|..    .++.++|.+.|++..+.|   +...+..+...|..    .++.++|+..|++..+.+       
T Consensus       148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------  217 (490)
T 2xm6_A          148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-------  217 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-------
Confidence            677888888887    789999999999999865   67788888888888    899999999999998754       


Q ss_pred             cCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 015811          154 KPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQP  225 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~  225 (400)
                        +...+..+...+..    .+++++|..+|++..+.+   +...+..+...+..    .+++++|...++...+.+   
T Consensus       218 --~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---  289 (490)
T 2xm6_A          218 --DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---  289 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence              55677888888876    889999999999998764   45667777777777    899999999999998765   


Q ss_pred             CcccHHHHHHHHHhc-----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhcCCCCCH
Q 015811          226 NVVSSNVIMNELCKN-----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTG---KINRVKELFVSMESMGCKHDD  297 (400)
Q Consensus       226 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~  297 (400)
                      +...+..+...|...     +++++|...++...+.+   +...+..+...|...|   ++++|...+++..+.+   ++
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~  363 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EK  363 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CH
Confidence            456777788888887     89999999999999865   4567777888787766   7899999999999864   67


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc----cchHHHHHHHHHHHhhCCC
Q 015811          298 FSYNILINGYCK----NKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE----IRQAERALKLFVEMQGNDV  363 (400)
Q Consensus       298 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~  363 (400)
                      ..+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .++.++|...|++..+.+.
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            888889999988    899999999999998864   56677778888877    8999999999999988663

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=2.4e-19  Score=151.53  Aligned_cols=283  Identities=8%  Similarity=-0.060  Sum_probs=189.0

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      .+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   96 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA   96 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence            356778888999999999999999999998765 4578889999999999999999999999999875 34778888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH--H
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID--G  166 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~  166 (400)
                      ..+...|++++|.+.++++.+.. +.+...+..+...                            .|+......+..  .
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~  147 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------------DVDIDDLNVQSEDFF  147 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------------CC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------------HHHHHHHHHHHHhHH
Confidence            99999999999999999998764 2233333333110                            001111111211  2


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhH
Q 015811          167 LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNA  246 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  246 (400)
                      +...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            444555566666666555442 2244555556666666666666666666665543 23445566666666667777777


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHH
Q 015811          247 SRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH-----------DDFSYNILINGYCKNKEVEE  315 (400)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~  315 (400)
                      ...++.+.+.. +.+...+..+...+...|++++|...++++.+.....           +...|..+..++...|++++
T Consensus       226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            77776666543 3455666777777777777777777777776643111           46677778888888888888


Q ss_pred             HHHHHhhhhh
Q 015811          316 ALSLYNELPF  325 (400)
Q Consensus       316 A~~~~~~~~~  325 (400)
                      |..++++..+
T Consensus       305 A~~~~~~~l~  314 (327)
T 3cv0_A          305 VELTYAQNVE  314 (327)
T ss_dssp             HHHHTTCCSH
T ss_pred             HHHHHHHHHH
Confidence            8888776553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=3.8e-19  Score=150.22  Aligned_cols=281  Identities=9%  Similarity=0.006  Sum_probs=225.1

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+......+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            34567788889999999999999999999875 3477888899999999999999999999999875 557788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH--HH
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIH--GF  202 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~  202 (400)
                      .+...|++++|++.++++....       +.+...+..+....                      |+......+..  .+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~  148 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFF  148 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-------TTTTTC------------------------------------------CCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHH
Confidence            9999999999999999998764       23333333331111                      11112223312  36


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 015811          203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVK  282 (400)
Q Consensus       203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  282 (400)
                      ...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence            77899999999999999875 4467888999999999999999999999998865 556788999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-----------CHHHHHHHHHHHhccchHHHH
Q 015811          283 ELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP-----------TVVTYNTLFHGLFEIRQAERA  351 (400)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a  351 (400)
                      ..++++.+.. +.+...+..+..++...|++++|...++++.+.....           +...|..+..++...|++++|
T Consensus       227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            9999998875 5578899999999999999999999999988752221           467888999999999999999


Q ss_pred             HHHHHHHh
Q 015811          352 LKLFVEMQ  359 (400)
Q Consensus       352 ~~~~~~~~  359 (400)
                      ..++++..
T Consensus       306 ~~~~~~~l  313 (327)
T 3cv0_A          306 ELTYAQNV  313 (327)
T ss_dssp             HHHTTCCS
T ss_pred             HHHHHHHH
Confidence            99987644

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=1.5e-17  Score=149.94  Aligned_cols=372  Identities=11%  Similarity=0.033  Sum_probs=253.4

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++...  |+...|..
T Consensus         9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~   84 (530)
T 2ooe_A            9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC   84 (530)
T ss_dssp             CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence            4678899999998 478999999999999999864 5578899999999999999999999999999874  57777877


Q ss_pred             HHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHcCCCccc
Q 015811           87 LIKGL-CAESRIVEAAA----LFTKLKAF-GCEP-NVITYNTLINGLCR---------TGHTIVALNLFKEMTNGNGEIG  150 (400)
Q Consensus        87 l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~  150 (400)
                      ++... ...|+.+.|.+    +|+..... |..| +...|...+.....         .|+++.|..+|++......   
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~---  161 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM---  161 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC---
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh---
Confidence            77533 34566665554    77766543 4443 45667777766554         6788899999988876321   


Q ss_pred             ccccCChhhHH-----------------------------------------------------------------HHHH
Q 015811          151 VVFKPNTVTYS-----------------------------------------------------------------IIID  165 (400)
Q Consensus       151 ~~~~~~~~~~~-----------------------------------------------------------------~l~~  165 (400)
                         ......|.                                                                 ..+.
T Consensus       162 ---~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~  238 (530)
T 2ooe_A          162 ---INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ  238 (530)
T ss_dssp             ---TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence               11111221                                                                 1111


Q ss_pred             HHHhc----CCh----HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCC
Q 015811          166 GLCKE----GFV----DKAKELFLQMKYENLNPNVVTYTSLIHGFCH-------ANDWN-------EAKGLLIEMVDQGV  223 (400)
Q Consensus       166 ~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~  223 (400)
                      .....    ++.    +.+..+|+++.... +.+...|..++..+.+       .|+++       +|..++++..+.-.
T Consensus       239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~  317 (530)
T 2ooe_A          239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL  317 (530)
T ss_dssp             HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence            11110    111    24444555555432 2345566666666654       57766       78888888876322


Q ss_pred             CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811          224 QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA-FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI  302 (400)
Q Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  302 (400)
                      +.+...+..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|..
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~  395 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT  395 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHH
Confidence            3456677777888888888888888888888753 2232 477777777778888888888888888753 222333322


Q ss_pred             HHHH-HHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC-CCCC--hhhHHHHHHHhh
Q 015811          303 LING-YCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND-VAAD--TCTYRTFIDGLC  378 (400)
Q Consensus       303 l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~  378 (400)
                      .+.. +...|++++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+....
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~  474 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  474 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            2222 335788899999988887652 2257788888888888899999999999888653 2222  336777777777


Q ss_pred             cCCcchhhHhhhhC
Q 015811          379 VRPQVRFTYARRKG  392 (400)
Q Consensus       379 ~~g~~~~a~~~~~~  392 (400)
                      ..|+.+.+..+.++
T Consensus       475 ~~G~~~~~~~~~~r  488 (530)
T 2ooe_A          475 NIGDLASILKVEKR  488 (530)
T ss_dssp             HSSCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHH
Confidence            88888887766554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.3e-17  Score=148.43  Aligned_cols=366  Identities=11%  Similarity=-0.024  Sum_probs=247.2

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc-
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI--------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC-   76 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-   76 (400)
                      +.+..+..||.+...+...|++++|++.|++..+.        ..+....+|..+..+|...|++++|...+++..+.. 
T Consensus        46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            34455778999999999999999999999987542        113346789999999999999999999999887531 


Q ss_pred             -----C-CccHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChHHHHHHHHHHHcC
Q 015811           77 -----F-APNVVTFTSLIKGLCA--ESRIVEAAALFTKLKAFGCEPNVITYNTLING---LCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        77 -----~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~  145 (400)
                           . .....++.....++..  .+++++|...|++..+.. +-++..+..+..+   +...++.++|++.+++..+.
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence                 0 1134556655555554  457999999999999874 3345555555544   34567888899999988875


Q ss_pred             CCcccccccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          146 NGEIGVVFKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       146 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      .       +.+...+..+...+..    .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.
T Consensus       205 ~-------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          205 N-------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             C-------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            4       4455666666555544    467889999999988764 346778889999999999999999999999886


Q ss_pred             CCCCCcccHHHHHHHHHhc-------------------CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHH
Q 015811          222 GVQPNVVSSNVIMNELCKN-------------------GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVK  282 (400)
Q Consensus       222 ~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  282 (400)
                      . +.+..++..+..+|...                   +..+.|...++...+.+ +.+...+..+...+...|++++|.
T Consensus       277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~  354 (472)
T 4g1t_A          277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE  354 (472)
T ss_dssp             S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred             C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence            4 33455666665555322                   23566777777777654 445667888899999999999999


Q ss_pred             HHHHHHHhcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          283 ELFVSMESMGCKHDDF--SYNILIN-GYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       283 ~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      ..|++..+....+...  .+..+.. .....|++++|+..+++..+.  .|+.....         +....+.+++++..
T Consensus       355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l  423 (472)
T 4g1t_A          355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRL  423 (472)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHH
Confidence            9999998865332221  2222322 235678999999999988875  44433222         22334445555555


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCCC
Q 015811          360 GNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGNS  394 (400)
Q Consensus       360 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  394 (400)
                      +.+ +.+..+|..+..+|...|++++|...+++..
T Consensus       424 ~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          424 SKN-GADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             HHC-C-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            432 3466788889999999999999988877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=3.3e-18  Score=141.25  Aligned_cols=248  Identities=14%  Similarity=0.089  Sum_probs=102.7

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPD--LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIV   98 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   98 (400)
                      ....|++..|+..++.....  .|+  ......+.++|...|+++.|+..++.   . .+|+..++..+...+...++.+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence            33445555555554443322  122  12333344455555555555443322   1 1334444444445555555555


Q ss_pred             HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHH
Q 015811           99 EAAALFTKLKAFGCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAK  177 (400)
Q Consensus        99 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  177 (400)
                      +|.+.++++...+..| +...+..+...+...|++++|++.+++            +.+...+..++.++.+.|++++|.
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~~~~~~~l~~~~~~~g~~~~A~  150 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDSLECMAMTVQILLKLDRLDLAR  150 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            5555555554443222 233333344445555555555555443            123334444444555555555555


Q ss_pred             HHHHHHHHcCCCCChHhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          178 ELFLQMKYENLNPNVVTY---TSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      +.++.+.+..  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.
T Consensus       151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555544432  221110   011122222244444444444444431 2233334444444444444444444444444


Q ss_pred             hCCCCCcHHHHHHHHHHHHcCCChHH-HHHHHHHHHh
Q 015811          255 QCDVRPNAFTYNTLMDGFCLTGKINR-VKELFVSMES  290 (400)
Q Consensus       255 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~  290 (400)
                      +.. +-+..++..++..+...|+.++ +..+++++.+
T Consensus       228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            332 2233344444444444444332 2334444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=6.7e-18  Score=139.39  Aligned_cols=278  Identities=10%  Similarity=-0.000  Sum_probs=222.2

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 015811           53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT  132 (400)
Q Consensus        53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  132 (400)
                      ++.....|++..|+..++.+....+.........+.++|...|+++.|...++..    -+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence            3456678999999999988766533322345667789999999999999877552    266778888999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 015811          133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAK  212 (400)
Q Consensus       133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  212 (400)
                      ++|++.++++.....     .|.+...+..+..++...|++++|++.+++      +.+...+..+...+.+.|++++|.
T Consensus        82 ~~A~~~l~~ll~~~~-----~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~  150 (291)
T 3mkr_A           82 DAIVAELDREMSRSV-----DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR  150 (291)
T ss_dssp             HHHHHHHHHHHHSCC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999876531     134566777788999999999999999987      457888999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHH----HHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811          213 GLLIEMVDQGVQPNVVSSNVI----MNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM  288 (400)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  288 (400)
                      ..++++.+..  |+.. ...+    +..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++
T Consensus       151 ~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          151 KELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999874  4432 2223    334445689999999999999874 678899999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHH
Q 015811          289 ESMGCKHDDFSYNILINGYCKNKEVEE-ALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLF  355 (400)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  355 (400)
                      .+.. +.+..++..++..+...|+.++ +..+++++.+.  .|+...   +.....+.+.++++..-|
T Consensus       227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence            9876 5688899999999999999876 67899998876  454432   234566777888877655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=5.3e-19  Score=149.21  Aligned_cols=266  Identities=12%  Similarity=0.107  Sum_probs=125.8

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      .+|..++.++.+.|++++|++.|.+      .+|..+|..++.++...|++++|...++...+.  .+++.+.+.++.+|
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y  104 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence            5888899999999999999988865      256678888888888889999998877776664  44567788888899


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG  171 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (400)
                      .+.|++.++.++++       .|+..+|..+...|...|.+++|..+|..+               ..|..++.++.+.|
T Consensus       105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg  162 (449)
T 1b89_A          105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLG  162 (449)
T ss_dssp             ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------------TCHHHHHHHHHTTT
T ss_pred             HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhc
Confidence            99999888887774       366678888999999999999999998865               26888899999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 015811          172 FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLD  251 (400)
Q Consensus       172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  251 (400)
                      ++++|.+.+.++      .++.+|..++.+|...|+++.|......     +...+.....++..|.+.|.+++|..+++
T Consensus       163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe  231 (449)
T 1b89_A          163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE  231 (449)
T ss_dssp             CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999988887      2678889999999999999988554443     22333445567888889999999999998


Q ss_pred             HHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-hcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 015811          252 LMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME-SMGCKH------DDFSYNILINGYCKNKEVEEALSLY  320 (400)
Q Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~  320 (400)
                      ...... +.....|+.+..+|++- ++++..+.++... +.+++|      +...|..++..|...++++.|....
T Consensus       232 ~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          232 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            888765 55667777777766654 3444444433332 122233      3557888888888889998887644

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=7.5e-19  Score=148.29  Aligned_cols=281  Identities=12%  Similarity=0.099  Sum_probs=130.4

Q ss_pred             ccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811           23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA  102 (400)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  102 (400)
                      +.|++++|.+.++++      +++.+|..++.++.+.|++++|++.|.+.      +|...|..++..+...|++++|..
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            567899999998887      34458999999999999999999999652      477788899999999999999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811          103 LFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ  182 (400)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  182 (400)
                      +++..++.  .+++.+.+.++.+|.+.|+++++.++++             .|+..+|..+...|...|.+++|..+|..
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~  147 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN  147 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------------CC----------------CTTTHHHHHHH
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88877764  4567788889999999999999887773             35666999999999999999999999987


Q ss_pred             HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH
Q 015811          183 MKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA  262 (400)
Q Consensus       183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  262 (400)
                      +         ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+     ...+
T Consensus       148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a  207 (449)
T 1b89_A          148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA  207 (449)
T ss_dssp             T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred             h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence            6         36889999999999999999999887      26788999999999999999996554432     2334


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHhhhhhCCCCc------CHHH
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN--KEVEEALSLYNELPFKGIKP------TVVT  334 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p------~~~~  334 (400)
                      .....++..|.+.|.+++|..+++...... +-....|+.+..+|++-  ++..+.++.|..-.  .++|      +...
T Consensus       208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~  284 (449)
T 1b89_A          208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHL  284 (449)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTC
T ss_pred             hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence            445578888999999999999999988766 55677888888777764  34555555555332  2233      3456


Q ss_pred             HHHHHHHHhccchHHHHHH
Q 015811          335 YNTLFHGLFEIRQAERALK  353 (400)
Q Consensus       335 ~~~l~~~~~~~~~~~~a~~  353 (400)
                      |..++-.|...++++.|..
T Consensus       285 w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          285 WAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhchHHHHHH
Confidence            8888888888888888876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=2.1e-15  Score=135.95  Aligned_cols=339  Identities=10%  Similarity=0.026  Sum_probs=246.1

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCChhhHHH----HHHHHHhc-cCC-c
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCF-CKMGQVSLGFV----IFGRILRS-CFA-P   79 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~   79 (400)
                      .|.+...|..++..+.+.|++++|..+|+++....  |+...|...+... ...|+.+.|.+    +|+..+.. |.. +
T Consensus        42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~  119 (530)
T 2ooe_A           42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM  119 (530)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence            46788899999999999999999999999998764  6888888777533 45677777665    66666542 333 3


Q ss_pred             cHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHH-------------HhcCChH--
Q 015811           80 NVVTFTSLIKGLCA---------ESRIVEAAALFTKLKAFGCEPN--VITYNTLINGL-------------CRTGHTI--  133 (400)
Q Consensus        80 ~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~-------------~~~~~~~--  133 (400)
                      +...|...+.....         .|+++.|..+|++.++.  +.+  ...|.......             .+.+++.  
T Consensus       120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A  197 (530)
T 2ooe_A          120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNA  197 (530)
T ss_dssp             CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHH
Confidence            45677777766554         67888888888887763  211  12222111100             0011122  


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHcCCCcccccccC
Q 015811          134 ----------------------------------------------------------VALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus       134 ----------------------------------------------------------~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                                                                                .+..+|++....       .+.
T Consensus       198 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-------~p~  270 (530)
T 2ooe_A          198 RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-------LGH  270 (530)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-------HTT
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-------CCC
Confidence                                                                      333344444432       244


Q ss_pred             ChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          156 NTVTYSIIIDGLCK-------EGFVD-------KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       156 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      +...|..++..+.+       .|+++       +|..+|++..+.-.+.+...|..++..+.+.|++++|..+++++.+.
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            56777777777765       68987       89999999986323345788999999999999999999999999986


Q ss_pred             CCCCCc--ccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCChHHHHHHHHHHHhcCCCCCHH
Q 015811          222 GVQPNV--VSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKINRVKELFVSMESMGCKHDDF  298 (400)
Q Consensus       222 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~  298 (400)
                        .|+.  ..|...+..+.+.|++++|..+|+...+.. +.+...+...+.. +...|+.++|..+|+...+.. +.+..
T Consensus       351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~  426 (530)
T 2ooe_A          351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE  426 (530)
T ss_dssp             --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred             --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence              4442  478888888889999999999999998864 2333333333222 346899999999999998864 45788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhhhCCC-CcC--HHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELPFKGI-KPT--VVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .|..++..+.+.|+.++|..+|++...... .|+  ...|...+......|+.+.+..+++++.+
T Consensus       427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999987632 232  45788888888889999999999999875

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.78  E-value=3.2e-19  Score=162.63  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             CcccHHHHHHHHHhcCCchhHHHHHHHHHh---CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811          226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQ---CDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI  302 (400)
Q Consensus       226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  302 (400)
                      -..+|+.+|.+|++.|++++|.++|..|.+   .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345788888888888888888888877654   46788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCC-HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC------hhhHHHHHH
Q 015811          303 LINGYCKNKE-VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD------TCTYRTFID  375 (400)
Q Consensus       303 l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~  375 (400)
                      +|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+    +..++..+++ ..+..|+      ..+-..|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            8888888887 46788888888888888888888877654433    3444445444 3344443      333344555


Q ss_pred             HhhcCC
Q 015811          376 GLCVRP  381 (400)
Q Consensus       376 ~~~~~g  381 (400)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.1e-16  Score=128.60  Aligned_cols=233  Identities=11%  Similarity=0.018  Sum_probs=168.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      ....+..+...+...|++++|...|++..+..  .+..++..+..++...|++++|+..+++.....+......+.....
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            34567778888888899999999998888876  6778888888889999999999999888876431100000001577


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK  239 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (400)
                      +..+..++...|++++|...++++....  |+.       ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence            8888899999999999999999988753  442       34556677888888888877753 3344566667777777


Q ss_pred             cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811          240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSL  319 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  319 (400)
                      .|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus       152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            777777777777777654 4456667777777777777777777777777654 44566677777777777777777777


Q ss_pred             HhhhhhC
Q 015811          320 YNELPFK  326 (400)
Q Consensus       320 ~~~~~~~  326 (400)
                      +++..+.
T Consensus       230 ~~~a~~~  236 (258)
T 3uq3_A          230 LDAARTK  236 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.3e-17  Score=132.08  Aligned_cols=225  Identities=8%  Similarity=0.007  Sum_probs=152.2

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--c----HHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--N----VVTF   84 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~   84 (400)
                      +.+|..+...+...|++++|+..|+++.+..  .+...+..+..++...|++++|.+.+++..+.....  +    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567777788888888888888888877766  667777888888888888888888888777643211  1    4667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII  164 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (400)
                      ..+...+...|++++|...|++..+.  .|+.       ..+...|++++|...++.+....       +.+...+..+.
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~  146 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG  146 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence            77777777788888888888777765  3332       33445566777777777776653       34556666677


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCch
Q 015811          165 DGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  244 (400)
                      ..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+..++...|+++
T Consensus       147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence            77777777777777777776653 2345666666666667777777777776666653 334455556666666666666


Q ss_pred             hHHHHHHHHHh
Q 015811          245 NASRLLDLMVQ  255 (400)
Q Consensus       245 ~a~~~~~~~~~  255 (400)
                      +|...++...+
T Consensus       225 ~A~~~~~~a~~  235 (258)
T 3uq3_A          225 SALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.77  E-value=3.2e-19  Score=162.69  Aligned_cols=153  Identities=10%  Similarity=0.172  Sum_probs=125.6

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNS---IGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      .+||++|++|++.|++++|.++|++|.+   .|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            4799999999999999999999988764   5889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccc--ccCChhhHHHHHH
Q 015811           89 KGLCAESR-IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVV--FKPNTVTYSIIID  165 (400)
Q Consensus        89 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~  165 (400)
                      .++++.|+ .++|.++|++|.+.|+.||..+|+.++....+.    .+++.++++   .++....  .+|...+...+..
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv---~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV---KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG---CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh---CcccCCCCCCcccccchHHHHH
Confidence            99999998 578999999999999999999999998655443    334444444   2222111  1122455666777


Q ss_pred             HHHhcC
Q 015811          166 GLCKEG  171 (400)
Q Consensus       166 ~~~~~~  171 (400)
                      .+.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.77  E-value=1.2e-16  Score=126.25  Aligned_cols=199  Identities=13%  Similarity=-0.021  Sum_probs=129.2

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |+++.++..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            6778888888888888999999999998888765 5577888888888888899999998888888875 3366777778


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC
Q 015811           88 IKGLCAE-----------SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN  156 (400)
Q Consensus        88 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  156 (400)
                      ..++...           |++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+..        .+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~  150 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--------DT  150 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------cc
Confidence            8888777           66677776666666653 3345556666666666666666666666665531        34


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015811          157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEM  218 (400)
Q Consensus       157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  218 (400)
                      ...+..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5556666666666666666666666666543 224455566666666666666666666544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=1.5e-15  Score=135.05  Aligned_cols=333  Identities=10%  Similarity=-0.082  Sum_probs=228.2

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC-----C--CCCCHHhHHHHHHHHHhc--CChhhHHHHHHHHHhccC
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-----G--LFPDLYTYSILINCFCKM--GQVSLGFVIFGRILRSCF   77 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~   77 (400)
                      .|....+|+.+..+|...|++++|...+++..+.     +  ......++.....++...  +++++|.+.|++.++..+
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            4556788999999999999999999999987542     1  112356677666666554  578999999999998753


Q ss_pred             CccHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCccc
Q 015811           78 APNVVTFTSLIKG---LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIG  150 (400)
Q Consensus        78 ~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~  150 (400)
                      . +...+..+..+   +...++.++|++.+++..+.. +.+..++..+...+..    .++.++|.+.+++.....    
T Consensus       170 ~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~----  243 (472)
T 4g1t_A          170 K-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA----  243 (472)
T ss_dssp             T-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----
T ss_pred             C-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----
Confidence            2 55555555544   345677788999999988774 4455666666555544    467789999999988764    


Q ss_pred             ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-------------------CCHHHH
Q 015811          151 VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA-------------------NDWNEA  211 (400)
Q Consensus       151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a  211 (400)
                         +.+...+..+...+...|++++|...+++..+.. +-+..++..+..+|...                   +.++.|
T Consensus       244 ---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A  319 (472)
T 4g1t_A          244 ---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA  319 (472)
T ss_dssp             ---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred             ---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence               5677889999999999999999999999998764 23456666665554322                   235678


Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHH--HHHHHHH-HHHcCCChHHHHHHHHHH
Q 015811          212 KGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAF--TYNTLMD-GFCLTGKINRVKELFVSM  288 (400)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~  288 (400)
                      ...++...+.. +.+...+..+...+...|++++|...|++..+....+...  .+..+.. .....|+.++|...+++.
T Consensus       320 ~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka  398 (472)
T 4g1t_A          320 VAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG  398 (472)
T ss_dssp             HHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888887764 4567788899999999999999999999998865433221  2223322 345789999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811          289 ESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND  362 (400)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  362 (400)
                      .+..  |+.....         +....+..++++..... +.+..+|..+...+...|++++|++.|++.++.+
T Consensus       399 l~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          399 VKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            8864  4432222         12334455566555543 3467789999999999999999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=1.4e-16  Score=125.76  Aligned_cols=200  Identities=16%  Similarity=0.024  Sum_probs=144.0

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      +++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            5677889999999999999999999999999876 3478889999999999999999999999999885 5567788888


Q ss_pred             HHHHHhc-----------CChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 015811          123 INGLCRT-----------GHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN  191 (400)
Q Consensus       123 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  191 (400)
                      ..++...           |++++|+..+++..+..       |.+...+..+..++...|++++|+..|++..+..  .+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~  150 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT  150 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence            8888888           77777777777777654       3456667777777777777777777777777665  46


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus       151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            6677777777777777777777777776653 3345556666666777777777776666543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=1e-15  Score=125.63  Aligned_cols=199  Identities=12%  Similarity=0.112  Sum_probs=114.9

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--HHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--VVTFTSLIK   89 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~   89 (400)
                      ..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++.+.+..++  ...|..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            445556666777777777777777776654 33445666666677777777777777777766321111  223566666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      .+...|++++|...|++..+.. +.+..++..+...+...|++++|+..+++.....       +.+...+..+...+..
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-------TTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------CCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHH
Confidence            6677777777777777666653 3345566666666666666666666666666543       3344455555523333


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND---WNEAKGLLIEMVD  220 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~  220 (400)
                      .+++++|.+.|+++.+.. +.+...+..+...+...++   +++|...+++..+
T Consensus       155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  207 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE  207 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence            346666666666665542 1223444444444444444   4445555554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.75  E-value=1.3e-14  Score=137.00  Aligned_cols=321  Identities=12%  Similarity=0.127  Sum_probs=205.8

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      ++.--...+..|...|.+.+|++++++....+-  ..+...-+.++.+..+. +..+..+...+....    +   ...+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence            334445678888899999999999999984321  12345555566665555 445555555554421    1   2336


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL  167 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (400)
                      ...+...|.+++|..+|++..     ......+.++.   ..+++++|.++.++..            +..+|..+..++
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------------EPAVWSQLAKAQ 1115 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------------CHHHHHHHHHHH
Confidence            667777888888888887752     11222222222   5677777777777542            355777777888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      ...|++++|++.|.+.      -|...|..++.++.+.|++++|.+.+....+..  +++...+.++.+|++.+++++..
T Consensus      1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A         1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred             HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence            8888888888777553      256667777777888888888888887766653  33333445777777777776433


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG  327 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  327 (400)
                      .+.    +   .++...+..+...|...|++++|..+|..+         ..|..++.++.+.|++++|.+.+++..   
T Consensus      1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A         1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred             HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence            332    2   334555666777777778888887777764         357777777777777777777777663   


Q ss_pred             CCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          328 IKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                         +..+|..+..+|...|++..|......     +..+...+..++..|.+.|.+++|+.+++.-
T Consensus      1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             ---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               456666666666666666666665442     2234445556666666777776666665443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=4.2e-16  Score=132.93  Aligned_cols=234  Identities=7%  Similarity=0.023  Sum_probs=153.5

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ-VSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      +..+|+.+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+ +++|+..|+++++..+. +...|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            34567777777777777777777777777654 4456777777777777775 77777777777776533 666777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      .++...|++++|+..|+++++.. +-+..+|..+..++...|++++|+..++++....       +.+...|+.+..++.
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence            77777777777777777777764 4466677777777777777777777777777654       445667777777777


Q ss_pred             h-cCChHHH-----HHHHHHHHHcCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811          169 K-EGFVDKA-----KELFLQMKYENLNPNVVTYTSLIHGFCHAN--DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN  240 (400)
Q Consensus       169 ~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (400)
                      . .|..++|     +..+++.+... +-+...|..+...+...|  ++++|.+.+.++ +. .+.+...+..+..+|.+.
T Consensus       246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence            6 4444555     36666666543 224556666666666665  466666666665 22 233445555666666655


Q ss_pred             C---------CchhHHHHHHHH-HhC
Q 015811          241 G---------KMDNASRLLDLM-VQC  256 (400)
Q Consensus       241 ~---------~~~~a~~~~~~~-~~~  256 (400)
                      |         ..++|..+++.+ .+.
T Consensus       323 ~~~~~~~~~~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          323 LENQCDNKEDILNKALELCEILAKEK  348 (382)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHh
Confidence            3         135666666666 443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.74  E-value=1.6e-15  Score=124.47  Aligned_cols=234  Identities=6%  Similarity=0.019  Sum_probs=140.4

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHH
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVI----TYNTL  122 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l  122 (400)
                      ..+......+...|++++|...|+++++..+ .+...+..+..++...|++++|...+++..+.+  ++..    +|..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l   80 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY   80 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence            3455566666777777777777777776542 244466667777777777777777777776632  2222    26666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF  202 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (400)
                      ...+...|++++|+..+++.....       +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAY  152 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHH
Confidence            777777777777777777776653       3455667777777777777777777777666542 22445555555233


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC---chhHHHHHHHHHhCC-CCCc------HHHHHHHHHHH
Q 015811          203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGK---MDNASRLLDLMVQCD-VRPN------AFTYNTLMDGF  272 (400)
Q Consensus       203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~  272 (400)
                      ...+++++|...++++.+.. +.+...+..+..++...|+   +++|...++++.+.. ..|+      ...+..+...|
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  231 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY  231 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            34447777777777766653 2234455555566666666   666666666554431 0122      13455555556


Q ss_pred             HcCCChHHHHHHHHHHHhcC
Q 015811          273 CLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       273 ~~~~~~~~a~~~~~~~~~~~  292 (400)
                      ...|++++|...++++.+..
T Consensus       232 ~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          232 TINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHhcC
Confidence            66666666666666665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.74  E-value=1.2e-14  Score=119.33  Aligned_cols=226  Identities=9%  Similarity=-0.049  Sum_probs=157.7

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCccHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPNVVT   83 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~   83 (400)
                      |.++.++..+...+...|++++|+..|++..+.   .+..++..+...+..    .+++++|...|++..+.+   +...
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a   76 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG   76 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence            455677777788888888888888888887763   355677777777777    788888888888877764   5666


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCcccccccC
Q 015811           84 FTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        84 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                      +..+...|..    .+++++|...|++..+.+   +..++..+...|..    .+++++|+..|++..+.+         
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------  144 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------  144 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------
Confidence            7777777777    788888888888777654   56667777777777    777777777777776643         


Q ss_pred             ChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCc
Q 015811          156 NTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNV  227 (400)
Q Consensus       156 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  227 (400)
                      +...+..+...+..    .+++++|...|++..+.+   +...+..+...+..    .+++++|...+++..+.+   +.
T Consensus       145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~  218 (273)
T 1ouv_A          145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG  218 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CH
Confidence            34556666666666    677777777777776653   34556666666666    677777777777766653   24


Q ss_pred             ccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 015811          228 VSSNVIMNELCK----NGKMDNASRLLDLMVQCD  257 (400)
Q Consensus       228 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  257 (400)
                      ..+..+..+|..    .+++++|...++...+.+
T Consensus       219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            455556666666    667777777776666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.74  E-value=1.4e-15  Score=133.75  Aligned_cols=343  Identities=13%  Similarity=0.035  Sum_probs=198.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV---SLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      ..+...+.+.|++++|.++|++..+.|   +...+..+...+...|+.   ++|..+|++..+.    +...+..+...+
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~   79 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL   79 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence            346778888999999999999998766   334555666667777877   8999999998864    555666677655


Q ss_pred             HhcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH---HHHHHHHHHHcCCCcccccccCChhhHHHH
Q 015811           92 CAES-----RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI---VALNLFKEMTNGNGEIGVVFKPNTVTYSII  163 (400)
Q Consensus        92 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  163 (400)
                      ...+     ++++|...|++..+.|   +...+..|...|...+...   ++.+.+......+         +......+
T Consensus        80 ~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~L  147 (452)
T 3e4b_A           80 AAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQ  147 (452)
T ss_dssp             HTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHH
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHH
Confidence            5554     7889999999999876   3336677777777665433   3444444444322         45566666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc
Q 015811          164 IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN---DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN  240 (400)
Q Consensus       164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  240 (400)
                      ...|...+.++++......+.+.-...+...+..+...|...|   +.++|+..|+...+.| +++...+..+...|...
T Consensus       148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g  226 (452)
T 3e4b_A          148 VLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA  226 (452)
T ss_dssp             HHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence            6777766654444443222222111223336667777777777   7778888887777776 33444435555566444


Q ss_pred             ----CCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-H--HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--
Q 015811          241 ----GKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-F--CLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK--  311 (400)
Q Consensus       241 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--  311 (400)
                          +++++|...|+... .   -++..+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|  
T Consensus       227 ~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g  298 (452)
T 3e4b_A          227 TLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW  298 (452)
T ss_dssp             GGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred             CCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence                57777888887776 2   244455555555 3  45677888888888877765   5666666666666 44  


Q ss_pred             ---CHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc----cchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----C
Q 015811          312 ---EVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE----IRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCV----R  380 (400)
Q Consensus       312 ---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  380 (400)
                         ++++|..+|++.. .|   ++..+..|...|..    ..++++|..+|++..+.|.   ......|...|..    .
T Consensus       299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~  371 (452)
T 3e4b_A          299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK  371 (452)
T ss_dssp             SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred             CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence               7888888887776 32   45555555555544    3377788888877776653   2233344444432    3


Q ss_pred             CcchhhHhhhhC
Q 015811          381 PQVRFTYARRKG  392 (400)
Q Consensus       381 g~~~~a~~~~~~  392 (400)
                      .+.++|..+++.
T Consensus       372 ~d~~~A~~~~~~  383 (452)
T 3e4b_A          372 PDPLNAYVFSQL  383 (452)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            466666665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.73  E-value=3.4e-14  Score=134.27  Aligned_cols=318  Identities=11%  Similarity=0.108  Sum_probs=226.9

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      ..+...+...|.+++|..+|++..     -.....+.++.   ..+++++|.++.+++      -+..+|..+..++...
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence            345667777888888888887752     12222233332   567788888877754      2466788888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH
Q 015811           95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD  174 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  174 (400)
                      |++++|.+.|.+.      .+...|..++.++.+.|++++|.+.|....+..        +++...+.++.+|++.++++
T Consensus      1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred             CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHH
Confidence            8888888888553      467777888888888888888888888776643        33333345788888888877


Q ss_pred             HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      +...+.    +   .++...|..+...|...|++++|..+|...         ..|..++.++.+.|+++.|.+.+++. 
T Consensus      1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A         1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred             HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence            533332    2   345666777888888888888888888774         36888888888888888888888876 


Q ss_pred             hCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHH
Q 015811          255 QCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVT  334 (400)
Q Consensus       255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~  334 (400)
                           .+..+|..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus      1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A         1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred             -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence                 24578888888888888888887766542     3456677889999999999999999998887553 223445


Q ss_pred             HHHHHHHHh--ccchHHHHHHHHHHHhhCCCCC------ChhhHHHHHHHhhcCCcchhhHhhh
Q 015811          335 YNTLFHGLF--EIRQAERALKLFVEMQGNDVAA------DTCTYRTFIDGLCVRPQVRFTYARR  390 (400)
Q Consensus       335 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~  390 (400)
                      |+-+...+.  +-++..++.++|..-..  ++|      +...|..++-.|.+.|+++.|....
T Consensus      1317 ftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1317 FTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            655555554  45566666666664322  333      4567999999999999999987443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.73  E-value=6.2e-16  Score=127.07  Aligned_cols=198  Identities=14%  Similarity=-0.043  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHH
Q 015811           82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYS  161 (400)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (400)
                      .++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..++++....       +.+...+.
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~  115 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHL  115 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccccHHHH
Confidence            334444444444444444444444444432 2234444444444444555555555554444432       22344444


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 015811          162 IIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (400)
                      .+..++...|++++|...++++.+..  |+.......+..+...|++++|...+....... +++... ..++..+...+
T Consensus       116 ~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~  191 (275)
T 1xnf_A          116 NRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNI  191 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhc
Confidence            44555555555555555555544431  222222222233333455555555554444432 112222 22333444444


Q ss_pred             CchhHHHHHHHHHhCCCC---CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          242 KMDNASRLLDLMVQCDVR---PNAFTYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      +.++|...+....+....   .+...+..+...+...|++++|...++++.+.
T Consensus       192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            444455544444332100   01234444444444555555555555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=3.4e-15  Score=127.35  Aligned_cols=217  Identities=12%  Similarity=0.025  Sum_probs=122.7

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR-IVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      ...|..+..++...|++++|++.++++++..+ -+..+|+.+..++...|+ +++|+..|++.++.. +-+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            34566666666666667777777766666542 255566666666666664 666666666666654 335566666666


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      ++...|++++|+..|+++....       +.+...|..+..++...|++++|+..++++++... -+...|+.+..++..
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            6666666666666666666654       44556666666666666666666666666665532 245556666666555


Q ss_pred             -cCCHHHH-----HHHHHHHHHCCCCCCcccHHHHHHHHHhcC--CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC
Q 015811          205 -ANDWNEA-----KGLLIEMVDQGVQPNVVSSNVIMNELCKNG--KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT  275 (400)
Q Consensus       205 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  275 (400)
                       .|..++|     +..+++.+... +-+...|..+..++...|  ++++|.+.+..+ +.. +.+...+..++..|...
T Consensus       247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence             3443444     34455554432 223344444444444444  345555555444 221 23344444455444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.72  E-value=3.8e-15  Score=118.39  Aligned_cols=205  Identities=10%  Similarity=-0.045  Sum_probs=127.1

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |.++.+|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            3456667777777777777777777777776654 3456666777777777777777777777776653 2255566666


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811           88 IKGLCAE-SRIVEAAALFTKLKAFGCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID  165 (400)
Q Consensus        88 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (400)
                      ...+... |++++|...++++.+.+..| +...+..+..++...|++++|+..++++....       +.+...+..+..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~  155 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELAR  155 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHH
Confidence            6666677 77777777777666521122 24455666666666666666666666665543       334555666666


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      ++...|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus       156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            66666666666666666655432134445555555556666666666666665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.72  E-value=8.7e-16  Score=123.73  Aligned_cols=201  Identities=14%  Similarity=0.126  Sum_probs=117.1

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ...+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            44566666777777777777777777776654 4456677777777777777777777777776653 235566666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|+..++++....       +.+...+..+..++..
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------ENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHH
Confidence            7777777777777777766654 3455666666666777777777777777666543       3445566666666666


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      .|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus       172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            666666666666666542 224455566666666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=3.1e-15  Score=121.25  Aligned_cols=203  Identities=13%  Similarity=-0.028  Sum_probs=148.8

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      ...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4566777777778888888888888877764 3356677777788888888888888888877764 3456677777778


Q ss_pred             HHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015811          126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA  205 (400)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (400)
                      +...|++++|++.++++.....     .+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence            8888888888888888776210     13355677777778888888888888888877653 23566777778888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 015811          206 NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD  257 (400)
Q Consensus       206 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  257 (400)
                      |++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus       189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            88888888888877653 3455667777777888888888888888877753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=5.2e-14  Score=115.47  Aligned_cols=224  Identities=14%  Similarity=-0.038  Sum_probs=133.4

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYN  120 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  120 (400)
                      +..++..+...+...|++++|.+.|++..+.   .+...+..+...+..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4556666666667777777777777776662   244556666666666    677777777777766654   555666


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCh
Q 015811          121 TLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNV  192 (400)
Q Consensus       121 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  192 (400)
                      .+...+..    .+++++|+..|++..+.+         +...+..+...+..    .+++++|+..|++..+.+   +.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~  146 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG  146 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence            66666666    666667766666665532         44556666666666    666666666666666543   34


Q ss_pred             HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCCchhHHHHHHHHHhCCCCCcHHH
Q 015811          193 VTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK----NGKMDNASRLLDLMVQCDVRPNAFT  264 (400)
Q Consensus       193 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  264 (400)
                      ..+..+...+..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...++...+.+   +...
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a  220 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG  220 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence            455555555555    566666666666665543   33444555555555    556666666665555543   1344


Q ss_pred             HHHHHHHHHc----CCChHHHHHHHHHHHhcC
Q 015811          265 YNTLMDGFCL----TGKINRVKELFVSMESMG  292 (400)
Q Consensus       265 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  292 (400)
                      +..+...|..    .+++++|...+++..+.+
T Consensus       221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            4455555555    555555555555555543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.71  E-value=8e-16  Score=126.42  Aligned_cols=247  Identities=11%  Similarity=-0.022  Sum_probs=139.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           93 AESRIVEAAALFTKLKAFGC---EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      ..|++++|...++++.+...   +.+..++..+...+...|++++|+..|+++....       +.+...+..+..++..
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHH
Confidence            34667777777777765421   1134556666777777777777777777776653       3456667777777777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRL  249 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  249 (400)
                      .|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+..  |+.......+..+...|++++|...
T Consensus        90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~  166 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV  166 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence            777777777777776653 2245666666677777777777777777766642  3333333344444555666666666


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCK---HDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      +....... +++...+ .++..+...++.++|...+....+....   .+...+..+..+|...|++++|...++++.+.
T Consensus       167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            65555442 2333333 2444555556666666666665443210   01345555666666666666666666666554


Q ss_pred             CCCcCHHHHHHHHHHHhccchHHHHHHHH
Q 015811          327 GIKPTVVTYNTLFHGLFEIRQAERALKLF  355 (400)
Q Consensus       327 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  355 (400)
                        .|+.  +.....++...|++++|++.+
T Consensus       245 --~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          245 --NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             --Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence              2211  122233445555555555544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.71  E-value=2.1e-14  Score=116.31  Aligned_cols=202  Identities=11%  Similarity=0.017  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      ...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|++.++++....       +.+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~  108 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL  108 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence            4556666666667777777777777766653 3455666666667777777777777777666543       3455666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK  239 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (400)
                      ..+..++...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  187 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK  187 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence            666667777777777777777766522223 34556666666667777777777777766653 2345556666666777


Q ss_pred             cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811          240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  292 (400)
                      .|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus       188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            777777777777666643 3455566666666667777777777777766653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.70  E-value=2.4e-14  Score=113.70  Aligned_cols=96  Identities=10%  Similarity=-0.013  Sum_probs=41.7

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL  126 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (400)
                      ..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            344444444444444444444444444432 1133344444444444444444444444444332 22333444444444


Q ss_pred             Hhc-CChHHHHHHHHHHHc
Q 015811          127 CRT-GHTIVALNLFKEMTN  144 (400)
Q Consensus       127 ~~~-~~~~~a~~~~~~~~~  144 (400)
                      ... |++++|+..++++..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHHHHc
Confidence            444 444444444444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.69  E-value=2.8e-15  Score=120.68  Aligned_cols=128  Identities=12%  Similarity=0.075  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC  127 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  127 (400)
                      .|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence            34444444444444444444444444432 1233444444444444444444444444444432 223334444444444


Q ss_pred             hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811          128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMK  184 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  184 (400)
                      ..|++++|++.++++.+..       +.+...+..+..++...|++++|...++++.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4444444444444444332       2233334444444444444444444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=2.6e-15  Score=130.70  Aligned_cols=280  Identities=12%  Similarity=0.018  Sum_probs=179.8

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----cC-C
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRS----CF-A   78 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~   78 (400)
                      ++....+......+...|++++|+..|+++.+.+ +.+    ..++..+...+...|++++|...+++....    +. +
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            3556677888899999999999999999998864 334    357888999999999999999999987653    11 1


Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hH
Q 015811           79 PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-PN----VITYNTLINGLCRTGH--------------------TI  133 (400)
Q Consensus        79 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~  133 (400)
                      ....++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            23557888899999999999999999988754100 11    3467788888999999                    88


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHhHHHHHHHHHhcCCH
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPN----VVTYTSLIHGFCHANDW  208 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~  208 (400)
                      +|+..+++........+. .+....++..+..++...|++++|...+++..+... .++    ..++..+...+...|++
T Consensus       165 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  243 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF  243 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence            888888776543110000 112234566777777788888888888777654310 011    12566666667777777


Q ss_pred             HHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHHHHHHHHHhCCC-----CCcHHHHHHHHHHHHcCCCh
Q 015811          209 NEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNASRLLDLMVQCDV-----RPNAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       209 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~  278 (400)
                      ++|...+++..+.... .+    ..++..+...|...|++++|...++...+...     .....++..+...|...|++
T Consensus       244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  323 (406)
T 3sf4_A          244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH  323 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            7777777666542100 01    23444555555566666666665555443210     00123444455555555555


Q ss_pred             HHHHHHHHHHH
Q 015811          279 NRVKELFVSME  289 (400)
Q Consensus       279 ~~a~~~~~~~~  289 (400)
                      ++|...+++..
T Consensus       324 ~~A~~~~~~al  334 (406)
T 3sf4_A          324 DQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=5.4e-15  Score=128.65  Aligned_cols=305  Identities=11%  Similarity=0.026  Sum_probs=217.6

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-C
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCE-P  114 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~  114 (400)
                      .+....+......+...|++++|...|+++.+......   ..++..+...+...|++++|...+++....    +-. .
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            44666778888999999999999999999998743211   357888899999999999999999987643    111 1


Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC--------------------hH
Q 015811          115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF--------------------VD  174 (400)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~  174 (400)
                      ...++..+...+...|++++|+..+++.......... ......++..+...+...|+                    ++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            2456778889999999999999999988764311000 01124478888889999999                    99


Q ss_pred             HHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCch
Q 015811          175 KAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMD  244 (400)
Q Consensus       175 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~  244 (400)
                      +|...+.+....    +..+ ...++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998877543    1111 2346778888889999999999999888754111 11    236777888889999999


Q ss_pred             hHHHHHHHHHhCC----CCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHH
Q 015811          245 NASRLLDLMVQCD----VRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-KHD----DFSYNILINGYCKNKEVE  314 (400)
Q Consensus       245 ~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~  314 (400)
                      +|...++...+..    ..+ ...++..+...+...|++++|...+++..+... ..+    ..++..+..+|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            9999998876431    111 145677888888999999999999888765311 111    456778888888999999


Q ss_pred             HHHHHHhhhhhC----CCC-cCHHHHHHHHHHHhccchH
Q 015811          315 EALSLYNELPFK----GIK-PTVVTYNTLFHGLFEIRQA  348 (400)
Q Consensus       315 ~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~  348 (400)
                      +|...+++..+.    +.. ....++..+...+...|+.
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            999988886643    111 1233455555566655554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=4.5e-15  Score=129.48  Aligned_cols=275  Identities=15%  Similarity=0.037  Sum_probs=156.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +..+...+...|++++|...|+++.+.+ +.+.    .++..+...+...|++++|+..+++........+. .+.....
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~  128 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-chHHHHH
Confidence            3344455555666666666666655542 1122    24555555566666666666666555432100000 1223345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYE----NL-NPNVVTYTSLIHGFCHAND-----------------WNEAKGLLIE  217 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~  217 (400)
                      +..+..++...|++++|...+++..+.    +. .....++..+...+...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            566666666667777776666665443    10 1123355566666666677                 6677666666


Q ss_pred             HHHC----CC-CCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHcCCChHHHHHHHHH
Q 015811          218 MVDQ----GV-QPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-PN----AFTYNTLMDGFCLTGKINRVKELFVS  287 (400)
Q Consensus       218 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  287 (400)
                      ..+.    +. ......+..+...+...|++++|...+++..+.... .+    ...+..+...+...|++++|...+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            5432    10 111235566666777777777777777666543100 01    22566677777778888888877777


Q ss_pred             HHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC----CC-CcCHHHHHHHHHHHhccchHHHHHHHHHH
Q 015811          288 MESMGCK-----HDDFSYNILINGYCKNKEVEEALSLYNELPFK----GI-KPTVVTYNTLFHGLFEIRQAERALKLFVE  357 (400)
Q Consensus       288 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  357 (400)
                      ..+....     ....++..+..+|...|++++|...+++....    +. .....++..+...+...|++++|...+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6543100     11456667777777888888888877776543    10 11133566667777778888888888877


Q ss_pred             Hhh
Q 015811          358 MQG  360 (400)
Q Consensus       358 ~~~  360 (400)
                      ..+
T Consensus       369 al~  371 (411)
T 4a1s_A          369 HLQ  371 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=7.4e-15  Score=128.12  Aligned_cols=278  Identities=12%  Similarity=0.028  Sum_probs=208.9

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCChh
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV----VTFTSLIKGLCAESRIVEAAALFTKLKAF----G-CEPNVI  117 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~  117 (400)
                      ..+..+...+...|++++|...|+++++.... +.    .++..+...+...|++++|...+++..+.    + .+....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            44556677888999999999999999987433 32    46788889999999999999999887653    1 122345


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC-----------------hHHHHHHH
Q 015811          118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF-----------------VDKAKELF  180 (400)
Q Consensus       118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  180 (400)
                      ++..+...+...|++++|+..+++........+. .+....++..+..++...|+                 +++|.+.+
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            6778888999999999999999887654210000 12234578888899999999                 99999998


Q ss_pred             HHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHHHHH
Q 015811          181 LQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNASRLL  250 (400)
Q Consensus       181 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~  250 (400)
                      ++..+.    +..+ ...++..+...+...|++++|...+++..+.... .+    ...+..+..+|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            887542    1111 2357778889999999999999999988764211 11    226788889999999999999999


Q ss_pred             HHHHhCCCC-----CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015811          251 DLMVQCDVR-----PNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC-----KHDDFSYNILINGYCKNKEVEEALSLY  320 (400)
Q Consensus       251 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~  320 (400)
                      +...+....     ....++..+...+...|++++|...+++..+...     .....++..+..+|...|++++|...+
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            887653210     1256778889999999999999999998865310     112347788899999999999999999


Q ss_pred             hhhhhC
Q 015811          321 NELPFK  326 (400)
Q Consensus       321 ~~~~~~  326 (400)
                      ++..+.
T Consensus       367 ~~al~~  372 (411)
T 4a1s_A          367 EQHLQL  372 (411)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.64  E-value=6.1e-13  Score=116.94  Aligned_cols=305  Identities=9%  Similarity=-0.028  Sum_probs=172.1

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh---hHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVS---LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA  102 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  102 (400)
                      ++++|+..|++..+.|. +  ..+..+...|...+..+   .+.+.+......|   +......+...|...+.++++..
T Consensus        89 ~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             HHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence            44555555555555431 1  14444444444433322   2233333332222   23344445555555553333322


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc----CChHH
Q 015811          103 LFTKLKAFGCEPNVITYNTLINGLCRTG---HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE----GFVDK  175 (400)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  175 (400)
                      ....+.+.-...++..+..|...|...|   +.++|++.|++..+.+       +++...+..+...|...    +++++
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            2222221111233446677777777777   7777888887777765       45555555666666544    67778


Q ss_pred             HHHHHHHHHHcCCCCChHhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC-----CchhHH
Q 015811          176 AKELFLQMKYENLNPNVVTYTSLIHG-F--CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG-----KMDNAS  247 (400)
Q Consensus       176 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~  247 (400)
                      |.++|++.. .   -+...+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|.
T Consensus       236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            888887776 3   244555555555 3  45677888888888777765   4556666666665 44     777787


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHc----CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 015811          248 RLLDLMVQCDVRPNAFTYNTLMDGFCL----TGKINRVKELFVSMESMGCKHDDFSYNILINGYCK----NKEVEEALSL  319 (400)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~  319 (400)
                      ..|++.. .   -++.....|...|..    ..++++|...|++..+.|   +......|...|..    ..++++|..+
T Consensus       308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            7777766 3   345566666666655    337778888888777765   23344455555553    4577788888


Q ss_pred             HhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          320 YNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       320 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      |+...+.|.. +.......+......++..+|..+.++..
T Consensus       381 ~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          381 SQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             HHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            8877776532 33333333333444556666766666544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=7.8e-15  Score=124.08  Aligned_cols=208  Identities=13%  Similarity=0.037  Sum_probs=144.6

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----c-CCccH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRS----C-FAPNV   81 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~   81 (400)
                      ...+......+...|++++|+..|+++.+.. +.+    ...+..+...+...|++++|.+.+++..+.    + .+...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            3456667788899999999999999998864 234    467888999999999999999999987653    1 12235


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 015811           82 VTFTSLIKGLCAESRIVEAAALFTKLKAFGC-EPN----VITYNTLINGLCRTGH--------------------TIVAL  136 (400)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~  136 (400)
                      .++..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            6788889999999999999999998765421 112    3367788888889999                    88888


Q ss_pred             HHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHhHHHHHHHHHhcCCHHHH
Q 015811          137 NLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPN----VVTYTSLIHGFCHANDWNEA  211 (400)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a  211 (400)
                      ..+++.......... .+.....+..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|
T Consensus       164 ~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          164 DLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            888776542110000 112234667777778888888888888877654310 001    12455556666666666666


Q ss_pred             HHHHHHHHH
Q 015811          212 KGLLIEMVD  220 (400)
Q Consensus       212 ~~~~~~~~~  220 (400)
                      ...+++..+
T Consensus       243 ~~~~~~al~  251 (338)
T 3ro2_A          243 SEYYKKTLL  251 (338)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.63  E-value=3.4e-13  Score=112.53  Aligned_cols=233  Identities=11%  Similarity=0.043  Sum_probs=115.0

Q ss_pred             cchHHHHHHHHHcc----CCh----hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCh-------hhHHHH
Q 015811           11 VSSFNILLGCLAKN----KHY----DTVLSLFKRLNSIGLFPDLYTYSILINCFCK-------MGQV-------SLGFVI   68 (400)
Q Consensus        11 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~   68 (400)
                      ...|...+....++    ++.    ++|+.+|+++.... +.+...|..++..+..       .|++       ++|..+
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~   86 (308)
T 2ond_A            8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI   86 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence            34555555554433    122    46666666666543 3456666666655542       3554       566666


Q ss_pred             HHHHHh-ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           69 FGRILR-SCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPN-VI-TYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        69 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      |++.++ .. +.+...|..++..+...|++++|..+|++..+.  .|+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus        87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A           87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            666655 22 224445555666666666666666666666553  232 22 4555555555566666666666665554


Q ss_pred             CCcccccccCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 015811          146 NGEIGVVFKPNTVTYSIIIDGLC-KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG-V  223 (400)
Q Consensus       146 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~  223 (400)
                      .       +.+...|........ ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... .
T Consensus       164 ~-------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l  235 (308)
T 2ond_A          164 A-------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             T-------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             C-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence            3       222333332222211 1355555555555554432 1234444455555555555555555555555431 2


Q ss_pred             CC--CcccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          224 QP--NVVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       224 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      +|  ....+..++..+.+.|+.+.|..+++++.+
T Consensus       236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            22  122344444444445555555555544444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.63  E-value=3.9e-14  Score=122.26  Aligned_cols=302  Identities=9%  Similarity=-0.060  Sum_probs=171.1

Q ss_pred             HHccCChhHHHHHHHHHHhC--CCCCCHH--hHHHHHHH--HHhcCChhhHH-----------HHHHHHHhccCCcc---
Q 015811           21 LAKNKHYDTVLSLFKRLNSI--GLFPDLY--TYSILINC--FCKMGQVSLGF-----------VIFGRILRSCFAPN---   80 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~--g~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~---   80 (400)
                      +.+.+++++|..+++++.+.  .+..+..  .|..++..  ..-.++.+.+.           +.++.+.......+   
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            45689999999999998653  2223433  33333322  22234444444           66776654321111   


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811           81 -VVTFTSLIKGLCAESRIVEAAALFTKLKAFG--CEP---NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK  154 (400)
Q Consensus        81 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  154 (400)
                       ...+......+...|++++|...+++..+.-  .+.   ...++..+...+...|++++|+..+++........+...+
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence             1112235667788999999999999998641  111   2467888999999999999999999988764311000001


Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 015811          155 PNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN-PN----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ----GV-Q  224 (400)
Q Consensus       155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~  224 (400)
                      ....+++.+..++...|++++|...+++..+.... ++    ..++..+..+|...|++++|...+++..+.    +. +
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence            12356777888888899999999888887653100 11    135666777777777777777777766652    11 2


Q ss_pred             CCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC----CCCcHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhcCCCCCH
Q 015811          225 PNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD----VRPNAFTYNTLMDGFCLTGK---INRVKELFVSMESMGCKHDD  297 (400)
Q Consensus       225 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~  297 (400)
                      ....++..+..++...|++++|...+++..+..    -+.....+..+...+...|+   .++|..++++....  +...
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~  339 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLE  339 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHH
Confidence            223445556666666666666666665554321    01111223344444555555   33444443333110  1112


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          298 FSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       298 ~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      ..+..+...|...|++++|...+++..
T Consensus       340 ~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          340 DFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            234444455555555555555554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=1.4e-14  Score=122.61  Aligned_cols=205  Identities=11%  Similarity=0.033  Sum_probs=131.2

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChh
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCE-PNVI  117 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~  117 (400)
                      ..+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|...+++..+.    +.. ....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            44556677889999999999999999987433 3    467888999999999999999999887643    111 2245


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC--------------------hHHHH
Q 015811          118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF--------------------VDKAK  177 (400)
Q Consensus       118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~  177 (400)
                      ++..+...+...|++++|...+++........+. ......++..+...+...|+                    +++|.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            6788889999999999999999987654310000 01113467778888888888                    77777


Q ss_pred             HHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHH
Q 015811          178 ELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNAS  247 (400)
Q Consensus       178 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~  247 (400)
                      +.+++....    +..+ ...++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            777765432    1111 1234555556666666666666666655432100 00    113344444444455555555


Q ss_pred             HHHHHH
Q 015811          248 RLLDLM  253 (400)
Q Consensus       248 ~~~~~~  253 (400)
                      ..++..
T Consensus       244 ~~~~~a  249 (338)
T 3ro2_A          244 EYYKKT  249 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.63  E-value=8.3e-14  Score=106.91  Aligned_cols=168  Identities=11%  Similarity=0.028  Sum_probs=124.5

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      .++.+|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+........ .+...+..+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence            356677888888888888888888888877765 44677777888888888888888888887777643 3566666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      ..+...++++.|...+.+..+.. +.+...+..+...+...|++++|++.|++..+..       +.+..+|..+..++.
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHH
Confidence            77777888888888887777664 4456677777777778888888888887777654       456677777777788


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 015811          169 KEGFVDKAKELFLQMKYE  186 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~  186 (400)
                      +.|++++|++.|++..+.
T Consensus       153 ~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          153 GKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHhC
Confidence            888888888888777764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.62  E-value=1.1e-13  Score=119.41  Aligned_cols=300  Identities=8%  Similarity=-0.036  Sum_probs=209.1

Q ss_pred             HHhcCChhhHHHHHHHHHhcc--C--CccHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCChhh
Q 015811           56 FCKMGQVSLGFVIFGRILRSC--F--APNVVTFTSLIKG--LCAESRIVEAA-----------ALFTKLKAFGCEPNVIT  118 (400)
Q Consensus        56 ~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~  118 (400)
                      +.+.+++++|..+++++.+.-  .  .++...|-.++..  ..-.++.+.+.           +.++.+...  +.+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence            456899999999999987642  1  2333344444332  11223344444           666665543  112222


Q ss_pred             ------HHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC-
Q 015811          119 ------YNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NP-  190 (400)
Q Consensus       119 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-  190 (400)
                            +......+...|++++|+..+++........+. ......++..+..++...|++++|...+.+..+... .+ 
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence                  222556778899999999999999875211000 011346788899999999999999999999876411 11 


Q ss_pred             ----ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCCchhHHHHHHHHHh-----C
Q 015811          191 ----NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ-PN----VVSSNVIMNELCKNGKMDNASRLLDLMVQ-----C  256 (400)
Q Consensus       191 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~  256 (400)
                          ...++..+...|...|++++|...+++..+.... ++    ..++..+..+|...|++++|...+++..+     .
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                1356788889999999999999999988754111 11    23678888999999999999999988876     3


Q ss_pred             CCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCC
Q 015811          257 DVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESM----GCKHDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIK  329 (400)
Q Consensus       257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~  329 (400)
                      ..+....++..+...+...|++++|...+++..+.    +-+.....+..+...+...|+   +++|+.++++....  .
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~  336 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--A  336 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--H
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--H
Confidence            32344677888999999999999999999988653    111122335678888888998   88888888776321  2


Q ss_pred             cCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          330 PTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .....+..+...|...|++++|...+++..+
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2344667788899999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=1.2e-12  Score=109.20  Aligned_cols=218  Identities=9%  Similarity=-0.022  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHcCCCcccccccCChhhHHHH
Q 015811           98 VEAAALFTKLKAFGCEPNVITYNTLINGLC-------RTGHT-------IVALNLFKEMTNGNGEIGVVFKPNTVTYSII  163 (400)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  163 (400)
                      ++|..+|++..+.. +.++..|..++..+.       ..|+.       ++|..+|++....-      .+.+...|..+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~~~~  105 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAY  105 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHHHHH
Confidence            57777888877653 456677777776665       35775       89999999998831      14456788999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCC-hH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hc
Q 015811          164 IDGLCKEGFVDKAKELFLQMKYENLNPN-VV-TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELC-KN  240 (400)
Q Consensus       164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  240 (400)
                      +..+...|++++|..+|+++.+.  .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..
T Consensus       106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999875  343 33 78888888888899999999999988764 233333333222211 26


Q ss_pred             CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHH
Q 015811          241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG-CKH--DDFSYNILINGYCKNKEVEEAL  317 (400)
Q Consensus       241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~  317 (400)
                      |++++|..+|+...+.. +.+...+..++..+...|++++|..+|++..... .+|  ....|..++....+.|+.+.|.
T Consensus       183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~  261 (308)
T 2ond_A          183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888777653 3456777777777788888888888888887752 233  4567777777777788888888


Q ss_pred             HHHhhhhhC
Q 015811          318 SLYNELPFK  326 (400)
Q Consensus       318 ~~~~~~~~~  326 (400)
                      .+++++.+.
T Consensus       262 ~~~~~a~~~  270 (308)
T 2ond_A          262 KVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=9e-14  Score=123.01  Aligned_cols=214  Identities=10%  Similarity=-0.088  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT-IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK  175 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  175 (400)
                      ++++...++...... +.+...+..+...+...|++ ++|++.|++..+..       +.+...|..+..++...|++++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~  155 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------PELVEAWNQLGEVYWKKGDVTS  155 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHH
Confidence            455666666555442 34566777777777778888 88888888777654       4456777777778888888888


Q ss_pred             HHHHHHHHHHcCCCCChHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhc------
Q 015811          176 AKELFLQMKYENLNPNVVTYTSLIHGFCHA---------NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKN------  240 (400)
Q Consensus       176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  240 (400)
                      |.+.|++..+.  .|+...+..+...+...         |++++|...+++..+.. +.+...+..+..+|...      
T Consensus       156 A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          156 AHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence            88888877765  35567777777777777         77777777777777654 33556667777777776      


Q ss_pred             --CCchhHHHHHHHHHhCCCC---CcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811          241 --GKMDNASRLLDLMVQCDVR---PNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE  315 (400)
Q Consensus       241 --~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  315 (400)
                        |++++|...|+...+.. +   .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++
T Consensus       233 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          233 NPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence              77777777777776653 2   356677777777777777777777777776654 4456666677777777777777


Q ss_pred             HHHHHhhh
Q 015811          316 ALSLYNEL  323 (400)
Q Consensus       316 A~~~~~~~  323 (400)
                      |...+.++
T Consensus       311 Ai~~~~~~  318 (474)
T 4abn_A          311 LLESKGKT  318 (474)
T ss_dssp             HHHHTTTC
T ss_pred             HHHHhccc
Confidence            77665544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=3.9e-13  Score=103.11  Aligned_cols=167  Identities=17%  Similarity=0.061  Sum_probs=115.6

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811          156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMN  235 (400)
Q Consensus       156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  235 (400)
                      ++..|..+..++...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            45667777777777777777777777777653 2355667777777777777777777777776653 334455666666


Q ss_pred             HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 015811          236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE  315 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  315 (400)
                      .+...++++.+...+....+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            6777777777777777766654 4456666677777777777777777777776664 4456667777777777777777


Q ss_pred             HHHHHhhhhhC
Q 015811          316 ALSLYNELPFK  326 (400)
Q Consensus       316 A~~~~~~~~~~  326 (400)
                      |...|++.++.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            77777776654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.58  E-value=1.7e-11  Score=111.62  Aligned_cols=377  Identities=10%  Similarity=0.003  Sum_probs=240.6

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhccC-CccHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ---VSLGFVIFGRILRSCF-APNVV   82 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~   82 (400)
                      .|-|..+|..++..+.+.+.++.+..+|+++...- +.....|...+..-.+.++   ++.+.++|++.+.... +|++.
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence            46789999999999999999999999999998863 6678899999999888888   9999999999998741 37888


Q ss_pred             HHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 015811           83 TFTSLIKGLCAESRI--------VEAAALFTKLKA-FGC-EPN-VITYNTLINGLCR---------TGHTIVALNLFKEM  142 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~  142 (400)
                      .|...+....+.++.        +...++|+.... .|. .++ ...|...+.....         .++.+.+..+|+++
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra  220 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL  220 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence            898888766655543        334577777664 365 443 4567766654432         23456677777777


Q ss_pred             HcCCCcccccccCChhhH--------------------------------------------------------------
Q 015811          143 TNGNGEIGVVFKPNTVTY--------------------------------------------------------------  160 (400)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------  160 (400)
                      .....      ..-..+|                                                              
T Consensus       221 L~iP~------~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~  294 (679)
T 4e6h_A          221 LCQPM------DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKP  294 (679)
T ss_dssp             TTSCC------SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCT
T ss_pred             HhCcc------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCC
Confidence            64220      0001111                                                              


Q ss_pred             -----------HHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 015811          161 -----------SIIIDGLCKEG-------FVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAK-GLLIEMVDQ  221 (400)
Q Consensus       161 -----------~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~  221 (400)
                                 ...+..--..+       ..+.+..+|+++... .+.....|...+..+.+.|+.++|. .+++.....
T Consensus       295 ~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~  373 (679)
T 4e6h_A          295 NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC  373 (679)
T ss_dssp             TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence                       11111100000       011223334444333 1223445555555556667777775 888887764


Q ss_pred             CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCC---------CC------------cHHHHHHHHHHHHcCCChHH
Q 015811          222 GVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDV---------RP------------NAFTYNTLMDGFCLTGKINR  280 (400)
Q Consensus       222 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~  280 (400)
                       .+.+...+...+....+.|+++.|..+|+.+.+...         .|            ...+|...+....+.|+.+.
T Consensus       374 -~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~  452 (679)
T 4e6h_A          374 -IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA  452 (679)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence             344444556667777788888888888887765310         12            12356666676677788888


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          281 VKELFVSMESMGCKHDDFSYNILINGYCKN-KEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       281 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      |..+|.++.+.-.......|...+..-.+. ++++.|..+|+...+. .+-+...|..++......|+.+.|..+|++..
T Consensus       453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal  531 (679)
T 4e6h_A          453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSI  531 (679)
T ss_dssp             HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            888888887651122233343333333333 4588888888888775 23355666677777777888888888888887


Q ss_pred             hCCCCC--ChhhHHHHHHHhhcCCcchhhHhhhhCC
Q 015811          360 GNDVAA--DTCTYRTFIDGLCVRPQVRFTYARRKGN  393 (400)
Q Consensus       360 ~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~  393 (400)
                      .....+  ....|...++--...|+.+.+..+.+++
T Consensus       532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~  567 (679)
T 4e6h_A          532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF  567 (679)
T ss_dssp             TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            654322  2346777777777888888877776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.58  E-value=1.3e-13  Score=121.95  Aligned_cols=215  Identities=12%  Similarity=-0.018  Sum_probs=184.0

Q ss_pred             ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 015811          131 HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV-DKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWN  209 (400)
Q Consensus       131 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (400)
                      ..++++..++......       +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|+++
T Consensus        83 ~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~  154 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVT  154 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            3667778888776653       55788899999999999999 99999999998874 335788999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcccHHHHHHHHHhc---------CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC-----
Q 015811          210 EAKGLLIEMVDQGVQPNVVSSNVIMNELCKN---------GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT-----  275 (400)
Q Consensus       210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  275 (400)
                      +|...+++..+..  |+...+..+..++...         |++++|...+++..+.. +.+...+..+..+|...     
T Consensus       155 ~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          155 SAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             HHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999874  5678888889999999         99999999999998875 55688899999999888     


Q ss_pred             ---CChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHH
Q 015811          276 ---GKINRVKELFVSMESMGCK---HDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAE  349 (400)
Q Consensus       276 ---~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  349 (400)
                         |++++|...|++..+.. +   .+...|..+..+|...|++++|...|++..+... -+...+..+...+...|+++
T Consensus       232 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence               99999999999999875 3   5888999999999999999999999999987632 25667888888999999999


Q ss_pred             HHHHHHHHH
Q 015811          350 RALKLFVEM  358 (400)
Q Consensus       350 ~a~~~~~~~  358 (400)
                      +|++.+.++
T Consensus       310 eAi~~~~~~  318 (474)
T 4abn_A          310 SLLESKGKT  318 (474)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHhccc
Confidence            998766543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.56  E-value=8.2e-14  Score=116.51  Aligned_cols=249  Identities=11%  Similarity=0.020  Sum_probs=174.7

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS----   75 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----   75 (400)
                      .|.+..++..+...+...|++++|+.+|+++.+.       ..+....++..+...+...|++++|...+++..+.    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999998763       22334677889999999999999999999998864    


Q ss_pred             --c-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           76 --C-FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF------GC-EPNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        76 --~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                        + .+....++..+...+...|++++|...+++..+.      +. +....++..+...+...|++++|+..++++...
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              1 1334667888999999999999999999998764      21 223456788889999999999999999998764


Q ss_pred             CCccc-ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChHh-------HHHHHHHHHhcCCHHH
Q 015811          146 NGEIG-VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-------NLNPNVVT-------YTSLIHGFCHANDWNE  210 (400)
Q Consensus       146 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~-------~~~l~~~~~~~~~~~~  210 (400)
                      ..... ...+....++..+..++...|++++|.+.++++.+.       ...+....       +..+...+...+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE  262 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            10000 001233467888899999999999999999998753       11122211       1222222334455566


Q ss_pred             HHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811          211 AKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                      +...+....... +....++..+..+|...|++++|...+++..+.
T Consensus       263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            666666665432 335567888999999999999999999988763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.55  E-value=9.5e-13  Score=113.32  Aligned_cols=313  Identities=10%  Similarity=-0.045  Sum_probs=185.5

Q ss_pred             CCcchHHHHHHHH--HccCChhHHHHHHHHHHhC--CCCCCH--HhHHHHHHH--HHhcCChhhHH---------HHHHH
Q 015811            9 PPVSSFNILLGCL--AKNKHYDTVLSLFKRLNSI--GLFPDL--YTYSILINC--FCKMGQVSLGF---------VIFGR   71 (400)
Q Consensus         9 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~l~~~--~~~~~~~~~a~---------~~~~~   71 (400)
                      |+..+=+.|-..|  ...+++++|..+++++.+.  .+..|.  ..|..++..  ..-.+....+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            4455555566666  7899999999999997552  222333  333444332  11123333333         66666


Q ss_pred             HHhccCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811           72 ILRSCFAPNV----VTFTSLIKGLCAESRIVEAAALFTKLKAFGC-EPN----VITYNTLINGLCRTGHTIVALNLFKEM  142 (400)
Q Consensus        72 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~  142 (400)
                      +.....+.+.    ..+......+...|++++|...|++..+... .++    ..++..+...+...|++++|+..+++.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            6543211111    1233345567789999999999999886421 122    356788889999999999999999987


Q ss_pred             HcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 015811          143 TNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIE  217 (400)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~  217 (400)
                      ................+++.+..++...|++++|.+.+++..+.    +..+ ...++..+..++...|++++|...+++
T Consensus       168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            65421100000112456778888899999999999999887653    1111 124566677777788888888888877


Q ss_pred             HHH-----CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCC----CCCcHHHHHHHHHHHHcCCC---hHHHHHHH
Q 015811          218 MVD-----QGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCD----VRPNAFTYNTLMDGFCLTGK---INRVKELF  285 (400)
Q Consensus       218 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~  285 (400)
                      ..+     .. +....++..+..++.+.|++++|...+++..+..    -+.....+..+...+...++   +.+|...+
T Consensus       248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            765     22 2224556666667777777777777776665431    11122334444455555555   44555444


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          286 VSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      +....  .+.....+..+...|...|++++|...|++..
T Consensus       327 ~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          327 EKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44211  01122344455566666666666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=2.7e-13  Score=124.78  Aligned_cols=171  Identities=11%  Similarity=0.046  Sum_probs=152.6

Q ss_pred             CCCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHH
Q 015811            5 HPSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTF   84 (400)
Q Consensus         5 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   84 (400)
                      .+.|.++.+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++... -+...|
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~   80 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAY   80 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence            3467788999999999999999999999999998875 45789999999999999999999999999999753 368899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIII  164 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (400)
                      ..+..++...|++++|++.|++..+.. +-+..+|+.+..++...|++++|+..|++..+..       +-+...+..+.
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~  152 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLA  152 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhh
Confidence            999999999999999999999999875 4567899999999999999999999999999865       55678999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 015811          165 DGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       165 ~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      .++...|++++|.+.++++.+
T Consensus       153 ~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          153 HCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHH
T ss_pred             hHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999888764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.54  E-value=5.5e-14  Score=117.57  Aligned_cols=176  Identities=14%  Similarity=0.091  Sum_probs=137.5

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRS-------CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF------G  111 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~  111 (400)
                      +..++..+...+...|++++|..+++++.+.       ..+....++..+...+...|++++|...+++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4677888999999999999999999999873       23445677888999999999999999999998764      2


Q ss_pred             C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcc-cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 015811          112 C-EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEI-GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE---  186 (400)
Q Consensus       112 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  186 (400)
                      - +....++..+...+...|++++|+..++++....... +...+.....+..+..++...|++++|.++++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 2235678888999999999999999999887642000 0001334567888889999999999999999998764   


Q ss_pred             ---CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          187 ---NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       187 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                         +..| ...++..+...+...|++++|...++++.+
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               2122 235677888889999999999999988875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=1.2e-12  Score=100.41  Aligned_cols=167  Identities=18%  Similarity=0.042  Sum_probs=139.9

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ....|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   84 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            34667788888999999999999999887664 4577888889999999999999999999988864 346778888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....       +.+...+..+..++..
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~  156 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHH
Confidence            9999999999999999988774 5567788888889999999999999999988764       4567788888888899


Q ss_pred             cCChHHHHHHHHHHHHc
Q 015811          170 EGFVDKAKELFLQMKYE  186 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~  186 (400)
                      .|++++|...++.+.+.
T Consensus       157 ~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          157 MGRHEEALPHFKKANEL  173 (186)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHc
Confidence            99999999998887764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.52  E-value=1.6e-11  Score=105.46  Aligned_cols=275  Identities=11%  Similarity=-0.009  Sum_probs=172.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhhHHHHHHHHHhccCC-cc----HHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY----TYSILINCFCKMGQVSLGFVIFGRILRSCFA-PN----VVT   83 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~   83 (400)
                      ........+...|++++|...+++........+..    ++..+...+...|+++.|...+++..+.... .+    ..+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34445566778999999999999987754222322    4666777888899999999999988763211 11    233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCC
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAF----GCE--P-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPN  156 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  156 (400)
                      +..+...+...|++++|...+++..+.    +.+  | ...++..+...+...|++++|...+++........+.  +..
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~  173 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQ  173 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGG
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHH
Confidence            566788889999999999999887753    211  2 2345666778889999999999999988765422110  112


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---c
Q 015811          157 TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV-VTYT-----SLIHGFCHANDWNEAKGLLIEMVDQGVQPN---V  227 (400)
Q Consensus       157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~  227 (400)
                      ...+..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...++........+.   .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            345677778888899999999998887654211111 1111     223346677888888888777654321111   1


Q ss_pred             ccHHHHHHHHHhcCCchhHHHHHHHHHhC----CCCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 015811          228 VSSNVIMNELCKNGKMDNASRLLDLMVQC----DVRPNA-FTYNTLMDGFCLTGKINRVKELFVSME  289 (400)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  289 (400)
                      ..+..+...+...|++++|...++.....    +..++. ..+..+..++...|+.++|...+++..
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            12344555666666666666666555332    111111 133444455555555555555555554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.52  E-value=3.3e-11  Score=103.49  Aligned_cols=277  Identities=12%  Similarity=-0.013  Sum_probs=192.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhccCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhH
Q 015811           49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNV----VTFTSLIKGLCAESRIVEAAALFTKLKAFGC-EPN----VITY  119 (400)
Q Consensus        49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~  119 (400)
                      .......+...|++++|...+++........+.    ..+..+...+...|++++|...+++...... ..+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344455667899999999999998876432222    2466677888899999999999998875311 112    1235


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--ChHh
Q 015811          120 NTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP-NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN--P--NVVT  194 (400)
Q Consensus       120 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~  194 (400)
                      ..+...+...|++++|...+++........+....| ....+..+...+...|++++|...+++.......  +  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            667788899999999999999876543110000002 2345666788899999999999999998765321  1  2345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccHH-----HHHHHHHhcCCchhHHHHHHHHHhCCCCC---cHHHH
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV-VSSN-----VIMNELCKNGKMDNASRLLDLMVQCDVRP---NAFTY  265 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~  265 (400)
                      +..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...+.........+   ....+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            777888889999999999999988764212221 1121     22344778999999999998887643211   12345


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          266 NTLMDGFCLTGKINRVKELFVSMESM----GCKHDD-FSYNILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       266 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      ..+...+...|++++|...+++....    +..++. ..+..+..++...|+.++|...+++...
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            67778888999999999999887542    211122 2566677888889999999999888765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.51  E-value=7.2e-12  Score=107.82  Aligned_cols=314  Identities=8%  Similarity=-0.024  Sum_probs=211.2

Q ss_pred             CCCHHhHHHHHHHH--HhcCChhhHHHHHHHHHhcc--C--CccHHHHHHHHHHH--HhcCCHH---------HHHHHHH
Q 015811           43 FPDLYTYSILINCF--CKMGQVSLGFVIFGRILRSC--F--APNVVTFTSLIKGL--CAESRIV---------EAAALFT  105 (400)
Q Consensus        43 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~--~~~~~~~---------~a~~~~~  105 (400)
                      .|+..+-..+-.-|  ...+++++|..+++++.+..  .  .++...|-.++..-  .-.+...         ...+.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45555555555555  78899999999999886632  1  22333444444321  1111111         1225555


Q ss_pred             HHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811          106 KLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFL  181 (400)
Q Consensus       106 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  181 (400)
                      .+.....+.+.    ..+......+...|++++|+..+++........+. .+....++..+..++...|+++.|...+.
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            55432101111    12233455667899999999999998875321000 11234578888999999999999999999


Q ss_pred             HHHHcC--C---CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCcccHHHHHHHHHhcCCchhHHHHH
Q 015811          182 QMKYEN--L---NP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ----GVQ-PNVVSSNVIMNELCKNGKMDNASRLL  250 (400)
Q Consensus       182 ~~~~~~--~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~  250 (400)
                      +..+..  .   .+ ...++..+...|...|++++|...+++..+.    +.. ....++..+..+|...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            887531  1   11 2456778889999999999999999988763    111 11346777888999999999999999


Q ss_pred             HHHHh-----CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 015811          251 DLMVQ-----CDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG----CKHDDFSYNILINGYCKNKE---VEEALS  318 (400)
Q Consensus       251 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~  318 (400)
                      ++..+     .. +....++..+...+...|++++|...+++..+..    -+.....+..+...+...++   +.+|+.
T Consensus       246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~  324 (378)
T 3q15_A          246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS  324 (378)
T ss_dssp             HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            98876     43 3346778889999999999999999999987642    12223456666677778888   888888


Q ss_pred             HHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          319 LYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       319 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .+++....  ......+..+...|...|++++|...|++..+
T Consensus       325 ~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          325 YFEKKNLH--AYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88764321  22234566778889999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=1.1e-11  Score=98.65  Aligned_cols=198  Identities=13%  Similarity=0.007  Sum_probs=156.9

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      +.++..|......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+..+. +...+..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence            45668899999999999999999999999998764378888888999999999999999999999987533 77889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC--Chh
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNV-------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP--NTV  158 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~  158 (400)
                      ..++...|++++|...+++..+.. +.+.       ..|..+...+...|++++|+..|++..+..       +.  +..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~  154 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-------SKKWKTD  154 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-------CHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-------CCcccHH
Confidence            999999999999999999999874 3344       457788888999999999999999998864       33  456


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811          159 TYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG  222 (400)
Q Consensus       159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  222 (400)
                      .+..+..++...|     ...++.+...+ ..+...|....  ....+.+++|...+++..+..
T Consensus       155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            7777777776544     34455555443 22344444333  234567899999999998864

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.47  E-value=7.7e-10  Score=100.86  Aligned_cols=223  Identities=9%  Similarity=-0.046  Sum_probs=166.2

Q ss_pred             cCChhhHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 015811          154 KPNTVTYSIIIDGLCKEGFVDKAK-ELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV---------  223 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------  223 (400)
                      +-....|...+..+...|+.++|. ++|+..... .+.+...|...+....+.|+++.|..+|+.++....         
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            345566667777777889988996 999999875 344666777888888899999999999999886410         


Q ss_pred             CCC------------cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHh
Q 015811          224 QPN------------VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT-GKINRVKELFVSMES  290 (400)
Q Consensus       224 ~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  290 (400)
                      .|+            ...|...+....+.|..+.|..+|..+.+.........|...+..-.+. ++.+.|..+|+...+
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            121            2356667777778899999999999998861122344444444333344 458999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc--CHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChh
Q 015811          291 MGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP--TVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTC  368 (400)
Q Consensus       291 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  368 (400)
                      . .+.+...|...+......|+.+.|..+|++.......+  ....|..++..-...|+.+.+.++.+++.+.  .|+..
T Consensus       499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~  575 (679)
T 4e6h_A          499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN  575 (679)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred             H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence            6 35577788888888889999999999999998763321  3457888888888899999999999999974  46666


Q ss_pred             hHHHHHHHhhcC
Q 015811          369 TYRTFIDGLCVR  380 (400)
Q Consensus       369 ~~~~l~~~~~~~  380 (400)
                      ....+++-|.-.
T Consensus       576 ~~~~f~~ry~~~  587 (679)
T 4e6h_A          576 KLEEFTNKYKVL  587 (679)
T ss_dssp             HHHHHHHHTCBT
T ss_pred             HHHHHHHHhcCC
Confidence            666666665433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=3.2e-11  Score=95.87  Aligned_cols=204  Identities=10%  Similarity=-0.049  Sum_probs=156.5

Q ss_pred             cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 015811          154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI  233 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  233 (400)
                      +.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            456788888999999999999999999999987643677788889999999999999999999999874 3366788889


Q ss_pred             HHHHHhcCCchhHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 015811          234 MNELCKNGKMDNASRLLDLMVQCDVRPNA-------FTYNTLMDGFCLTGKINRVKELFVSMESMGCKH--DDFSYNILI  304 (400)
Q Consensus       234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  304 (400)
                      ..++...|++++|...++...+.. +.+.       ..+..+...+...|++++|...++++.+.. +.  +...+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence            999999999999999999998864 3344       457788888899999999999999998874 33  356777788


Q ss_pred             HHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhH
Q 015811          305 NGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTY  370 (400)
Q Consensus       305 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  370 (400)
                      .+|...|+     .+++++...+ ..+...+....  ....+.+++|+..+++..+.  .|+....
T Consensus       161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~  216 (228)
T 4i17_A          161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEI  216 (228)
T ss_dssp             HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence            88765543     3444444432 22344444333  33457789999999998874  4554433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.45  E-value=1.6e-11  Score=94.03  Aligned_cols=165  Identities=14%  Similarity=0.014  Sum_probs=116.2

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL  126 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (400)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            456666777777788888888887776653 2356667777777777888888888887777663 44566677777777


Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAN  206 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  206 (400)
                      ...|++++|.+.++++....       +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHhcC-------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence            77777777777777776653       4456667777777777777777777777776653 234566667777777777


Q ss_pred             CHHHHHHHHHHHHHC
Q 015811          207 DWNEAKGLLIEMVDQ  221 (400)
Q Consensus       207 ~~~~a~~~~~~~~~~  221 (400)
                      ++++|...++.+.+.
T Consensus       159 ~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          159 RHEEALPHFKKANEL  173 (186)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            777777777776654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.45  E-value=5.9e-12  Score=115.95  Aligned_cols=166  Identities=14%  Similarity=0.099  Sum_probs=147.9

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +..+|+.+..++.+.|++++|++.|++.++... -+..++..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            467899999999999999999999999999753 368889999999999999999999999999875 456789999999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      ++...|++++|++.|++..+..       +-+...|..+..++...|++++|++.|++..+.. +-+...+..+..++..
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence            9999999999999999998865       5567899999999999999999999999999874 2357889999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 015811          205 ANDWNEAKGLLIEMVD  220 (400)
Q Consensus       205 ~~~~~~a~~~~~~~~~  220 (400)
                      .|++++|.+.++++.+
T Consensus       158 ~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          158 VCDWTDYDERMKKLVS  173 (723)
T ss_dssp             TTCCTTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH
Confidence            9999999998887764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.40  E-value=7.5e-12  Score=102.89  Aligned_cols=234  Identities=11%  Similarity=-0.020  Sum_probs=160.2

Q ss_pred             HccCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc------cC-CccHHHHHHH
Q 015811           22 AKNKHYDTVLSLFKRLNSI-------GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS------CF-APNVVTFTSL   87 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l   87 (400)
                      ...|++++|+.+|++..+.       ..+....++..+...+...|++++|...++++.+.      +. +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567888888888776542       21234678899999999999999999999998864      11 2346678899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc-ccccCChhh
Q 015811           88 IKGLCAESRIVEAAALFTKLKAF-----G--CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG-VVFKPNTVT  159 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~  159 (400)
                      ..++...|++++|...+++..+.     +  .+....++..+...+...|++++|+..+++......... ...+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764     1  122356788899999999999999999999876410000 001234567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCh-HhHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCC
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYE-------NLNPNV-VTYTSLIHGFCHANDWNE------AKGLLIEMVDQGVQP  225 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~  225 (400)
                      +..+..++...|++++|...++++.+.       ...+.. ..+..+.......+....      +...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888999999999999999999998753       122222 233333333333332222      2222221111 1122


Q ss_pred             CcccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811          226 NVVSSNVIMNELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                      ...++..+..+|...|++++|...+++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456788899999999999999999988763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.39  E-value=2.5e-11  Score=99.75  Aligned_cols=165  Identities=13%  Similarity=0.037  Sum_probs=124.0

Q ss_pred             HhcCChhhHHHHHHHHHhc-------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHH
Q 015811           57 CKMGQVSLGFVIFGRILRS-------CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF------GC-EPNVITYNTL  122 (400)
Q Consensus        57 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l  122 (400)
                      ...|++++|...+++.++.       ..+....++..+...+...|++++|...+++..+.      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567888888877777652       22335677889999999999999999999998764      21 2235678889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCccccc-ccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHh
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVV-FKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE------NLNP-NVVT  194 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~  194 (400)
                      ...+...|++++|+..+++........... .+....++..+..++...|++++|...++++.+.      +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999887641000000 1334677888999999999999999999998765      1122 3467


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      +..+...+...|++++|...+++..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            778888999999999999999888753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.37  E-value=6.3e-10  Score=90.24  Aligned_cols=246  Identities=10%  Similarity=0.013  Sum_probs=154.6

Q ss_pred             HHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCH
Q 015811           18 LGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRI   97 (400)
Q Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   97 (400)
                      ++...-.|++..++.-..   +.........-..+.+++...|++...         ....|....+..+...+ ..+  
T Consensus        20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred             HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence            455556889988887333   222122334444556788888877642         12234443444443333 322  


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHH
Q 015811           98 VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAK  177 (400)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  177 (400)
                        |+..|++..+.+ +++..++..+..++...|++++|++++.+....+.     ..-+...+...+.++.+.|+.+.|.
T Consensus        85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~  156 (310)
T 3mv2_B           85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAS  156 (310)
T ss_dssp             --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHH
Confidence              677777776654 45555666777888888888888888888766541     0135667777888888888888888


Q ss_pred             HHHHHHHHcCCCC-----ChHhHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 015811          178 ELFLQMKYENLNP-----NVVTYTSLIHGFC--HAN--DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASR  248 (400)
Q Consensus       178 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  248 (400)
                      +.+++|.+.  .|     +..+...++.++.  ..|  ++.+|..+|+++.+.  .|+..+...++.++.+.|++++|.+
T Consensus       157 k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~  232 (310)
T 3mv2_B          157 TIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence            888888765  34     2455555555532  223  788888888887654  3442333444557788888888888


Q ss_pred             HHHHHHhCC---------CCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811          249 LLDLMVQCD---------VRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       249 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  292 (400)
                      .++.+.+..         -+-++.++..++......|+  .|.++++++.+..
T Consensus       233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            887665421         13356666555555555665  7778888887764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.34  E-value=1.9e-10  Score=93.43  Aligned_cols=174  Identities=9%  Similarity=-0.052  Sum_probs=138.7

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--ccH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PNV   81 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~   81 (400)
                      .|.++..+..+...+.+.|++++|+..|+++.+.. +.+   ...+..+..++.+.|++++|...|+++++..+.  ...
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            45667888889999999999999999999998864 334   678899999999999999999999999986431  234


Q ss_pred             HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCChhhH-----------------HHHHHHHHhcCChHHHH
Q 015811           82 VTFTSLIKGLCA--------ESRIVEAAALFTKLKAFGCEPNVITY-----------------NTLINGLCRTGHTIVAL  136 (400)
Q Consensus        82 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~  136 (400)
                      ..+..+..++..        .|++++|...|+++.+.. +.+....                 ..+...|...|++++|+
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            567778888888        999999999999999874 2233444                 45678899999999999


Q ss_pred             HHHHHHHcCCCcccccccCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHc
Q 015811          137 NLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE----------GFVDKAKELFLQMKYE  186 (400)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  186 (400)
                      ..|+++....+.    .+.....+..+..++...          |++++|...|+++.+.
T Consensus       169 ~~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          169 VTYEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            999999876421    011345677777888766          8889999999998876

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.32  E-value=3.7e-10  Score=93.29  Aligned_cols=198  Identities=9%  Similarity=-0.081  Sum_probs=98.9

Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChHhHHHHH
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL---NP--NVVTYTSLI  199 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~  199 (400)
                      .|...|++++|+..|.+........+. ......+|+.+..+|...|++++|+..+++..+...   .+  ...++..+.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566666666666655432100000 011134566666666666777777666666554210   00  023455555


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHCCCCC-C----cccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcH------HHHHH
Q 015811          200 HGFCHA-NDWNEAKGLLIEMVDQGVQP-N----VVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNA------FTYNT  267 (400)
Q Consensus       200 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~  267 (400)
                      ..|... |++++|+..+++..+..... +    ..++..+...+...|++++|...++...+.......      ..+..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            666664 66666666666655431000 0    233555556666666666666666666554322111      13445


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHhhhhh
Q 015811          268 LMDGFCLTGKINRVKELFVSMESMGCKHD------DFSYNILINGYC--KNKEVEEALSLYNELPF  325 (400)
Q Consensus       268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~  325 (400)
                      +..++...|++++|...+++..+..  |+      ...+..++.++.  ..+++++|+..|+++..
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            5555666666666666666665432  11      112233444443  34556666666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.30  E-value=8.2e-11  Score=108.82  Aligned_cols=172  Identities=8%  Similarity=-0.094  Sum_probs=111.0

Q ss_pred             HccCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811           22 AKNKHYDTVLSLFKRLN--------SIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA   93 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   93 (400)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|.+.|+++++.. +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            56677777777777766        332 3355666677777777777777777777777654 2256666777777777


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh
Q 015811           94 ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV  173 (400)
Q Consensus        94 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (400)
                      .|++++|...|++..+.. +.+...+..+..++...|++++ +..|++..+..       +.+...|..+..++.+.|++
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~  550 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR  550 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence            777777777777777664 3355666677777777777777 77777776654       44556677777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcC
Q 015811          174 DKAKELFLQMKYENLNPN-VVTYTSLIHGFCHAN  206 (400)
Q Consensus       174 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  206 (400)
                      ++|.+.|+++.+.  .|+ ...+..+..++...+
T Consensus       551 ~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          551 VGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence            7777777766654  233 345555555554433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.30  E-value=1.6e-10  Score=93.86  Aligned_cols=215  Identities=9%  Similarity=-0.020  Sum_probs=133.5

Q ss_pred             cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcc
Q 015811          154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN---VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQ--PNVV  228 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~  228 (400)
                      +.+...+......+.+.|++++|...|+.+.+... .+   ...+..+..++.+.|++++|...++.+.+....  ....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            44556677777788888888888888888877532 12   456777778888888888888888888875311  1133


Q ss_pred             cHHHHHHHHHh--------cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 015811          229 SSNVIMNELCK--------NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY  300 (400)
Q Consensus       229 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  300 (400)
                      .+..+..++..        .|++++|...|+.+.+.. +.+......+..              +..+...    ....+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence            45566667777        778888888887777653 222222211111              0000000    01124


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhhhhCCCC-c-CHHHHHHHHHHHhcc----------chHHHHHHHHHHHhhCCCCCCh-
Q 015811          301 NILINGYCKNKEVEEALSLYNELPFKGIK-P-TVVTYNTLFHGLFEI----------RQAERALKLFVEMQGNDVAADT-  367 (400)
Q Consensus       301 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-  367 (400)
                      ..+..+|...|++++|...|+++.+.... + ....+..+..++...          |++++|...|+++.+.  .|+. 
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~  229 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP  229 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence            56677888888888888888888765211 1 234566666677655          8888888888888763  3443 


Q ss_pred             ---hhHHHHHHHhhcCCcchhhHhhh
Q 015811          368 ---CTYRTFIDGLCVRPQVRFTYARR  390 (400)
Q Consensus       368 ---~~~~~l~~~~~~~g~~~~a~~~~  390 (400)
                         .....+-..+...++++++..+.
T Consensus       230 ~~~~a~~~l~~~~~~~~~~~~~~~~~  255 (261)
T 3qky_A          230 LLRTAEELYTRARQRLTELEGDASLA  255 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence               23444555555666666554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.29  E-value=3e-10  Score=81.72  Aligned_cols=131  Identities=13%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      .+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            467888999999999999999999998765 4578889999999999999999999999998875 34677888899999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      ...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++...
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            99999999999999998875 456778888999999999999999999998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.27  E-value=1.4e-09  Score=88.23  Aligned_cols=179  Identities=9%  Similarity=-0.044  Sum_probs=95.3

Q ss_pred             HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHH
Q 015811          135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL-NPNVVTYTSLIHGFCHANDWNEAKG  213 (400)
Q Consensus       135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~  213 (400)
                      |+..|++....+       +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+
T Consensus        85 a~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k  157 (310)
T 3mv2_B           85 NIEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST  157 (310)
T ss_dssp             CCHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            455555555432       23344445566666666777777776666654432 1244555666666666677777777


Q ss_pred             HHHHHHHCCCCC-----CcccHHHHHHH--HHhcC--CchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHH
Q 015811          214 LLIEMVDQGVQP-----NVVSSNVIMNE--LCKNG--KMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKEL  284 (400)
Q Consensus       214 ~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  284 (400)
                      .+++|.+.  .|     +..+...++.+  ....|  ++..|..+|+++.+.  .|+......++.++...|++++|...
T Consensus       158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence            77666554  33     23444444444  22223  666666666666543  23322222333356666666666666


Q ss_pred             HHHHHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          285 FVSMESMG---------CKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       285 ~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ++.+.+..         -+.++.++..++......|+  +|.++++++.+.
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            66554320         02345555444444444454  566666666654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=1.1e-10  Score=88.58  Aligned_cols=169  Identities=13%  Similarity=0.021  Sum_probs=129.5

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |.+...+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+..+  +...+..+
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~   79 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLI   79 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHH
Confidence            3445677788889999999999999999987654 45788999999999999999999999999887643  44433332


Q ss_pred             HHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811           88 IKG-LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG  166 (400)
Q Consensus        88 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (400)
                      ... +...+....|...+++..+.. +.+...+..+...+...|++++|+..|+++....+     -..+...+..+..+
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHH
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHH
Confidence            222 122223335788888888774 44678889999999999999999999999988652     11235688899999


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 015811          167 LCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~  185 (400)
                      +...|+.++|...|++...
T Consensus       154 ~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          154 LSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCCCCcHHHHHHHHHH
Confidence            9999999999999987653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.26  E-value=5.5e-10  Score=87.19  Aligned_cols=138  Identities=12%  Similarity=-0.003  Sum_probs=95.1

Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 015811          232 VIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNK  311 (400)
Q Consensus       232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  311 (400)
                      .+..+|.+.|++++|...++...+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence            37778888888888888888888765 4567788888888888888888888888888875 556778888887776554


Q ss_pred             C--HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811          312 E--VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID  375 (400)
Q Consensus       312 ~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  375 (400)
                      +  .+.+...++.....  .|....+.....++...|++++|+..|++..+  +.|+......+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          137 EQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            3  44555666655421  22223333445556667888889988888886  4566655444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.26  E-value=5.7e-10  Score=103.24  Aligned_cols=186  Identities=10%  Similarity=0.005  Sum_probs=153.7

Q ss_pred             HhcCChHHHHHHHHHHH--------cCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 015811          127 CRTGHTIVALNLFKEMT--------NGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL  198 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  198 (400)
                      ...|++++|++.+++..        ...       +.+...+..+..++...|++++|+..|+++.+.. +.+...+..+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence            77899999999999998        432       5567889999999999999999999999998864 3367888999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh
Q 015811          199 IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI  278 (400)
Q Consensus       199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  278 (400)
                      ..++...|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.+ +.+...+..+..++...|++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~  550 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR  550 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999875 4467788899999999999999 99999998876 55678899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHhhhh
Q 015811          279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKE--------VEEALSLYNELP  324 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~  324 (400)
                      ++|...|+++.+.+ +.+...+..+..++...++        +++|.+.+..+.
T Consensus       551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99999999998864 3346677778888766444        666666666554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=3.7e-10  Score=93.24  Aligned_cols=233  Identities=12%  Similarity=0.010  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--C-ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH
Q 015811           99 EAAALFTKLKAFGCEPNVITYNTLINGLCRT--G-HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK  175 (400)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  175 (400)
                      +|.+++.+..+.- +++...| .+    .+.  + ++++|...|++.                     ...+...|++++
T Consensus         3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~~~~   55 (292)
T 1qqe_A            3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------------ATIYRLRKELNL   55 (292)
T ss_dssp             CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------------HHHHHHTTCTHH
T ss_pred             cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------------HHHHHHcCCHHH
Confidence            3566666666552 2222222 22    232  2 477888777765                     335678899999


Q ss_pred             HHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----cccHHHHHHHHHhc-CCch
Q 015811          176 AKELFLQMKYE----NLNPN-VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP-N----VVSSNVIMNELCKN-GKMD  244 (400)
Q Consensus       176 a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~  244 (400)
                      |...|.+..+.    +.+++ ..+|..+..+|...|++++|+..+++..+..... +    ..++..+..+|... |+++
T Consensus        56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~  135 (292)
T 1qqe_A           56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA  135 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence            99999887653    22222 4678889999999999999999999887642110 1    34677888889996 9999


Q ss_pred             hHHHHHHHHHhCCCCC-c----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCH
Q 015811          245 NASRLLDLMVQCDVRP-N----AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDD------FSYNILINGYCKNKEV  313 (400)
Q Consensus       245 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~  313 (400)
                      +|...|++..+..... +    ..++..+...+...|++++|...+++..+.......      ..|..+..++...|++
T Consensus       136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  215 (292)
T 1qqe_A          136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence            9999998887642110 1    356788899999999999999999999886432221      1567788889999999


Q ss_pred             HHHHHHHhhhhhCCCCcCH------HHHHHHHHHHh--ccchHHHHHHHHHHHhh
Q 015811          314 EEALSLYNELPFKGIKPTV------VTYNTLFHGLF--EIRQAERALKLFVEMQG  360 (400)
Q Consensus       314 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~  360 (400)
                      ++|...+++..+.  .|+.      ..+..++.++.  ..+++++|+..|+++..
T Consensus       216 ~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          216 VAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            9999999998864  3332      12344555554  45778888888877654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.25  E-value=8.7e-10  Score=79.23  Aligned_cols=129  Identities=14%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC  127 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  127 (400)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            34555566666666666666666666543 2245555556666666666666666666665543 334455555566666


Q ss_pred             hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      ..|++++|.+.++++....       +.+...+..+..++...|++++|...++.+..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            6666666666666655532       33445555555566666666666666655554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.25  E-value=4e-10  Score=87.99  Aligned_cols=163  Identities=10%  Similarity=0.042  Sum_probs=84.3

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChhhHHHHHHHHHhc
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSI----------------LINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      ..+-.....+.+.|++++|+..|++..+.. +.+...|..                +..++.+.|++++|...|++.++.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344455566777888888888888877653 223445555                555555666666666666665554


Q ss_pred             cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHcCCCcccccc
Q 015811           76 CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH--TIVALNLFKEMTNGNGEIGVVF  153 (400)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~  153 (400)
                      .+ .+...+..+..++...|++++|...|++..+.. +.+..++..+..+|...|+  ...+...++....        .
T Consensus        84 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------~  153 (208)
T 3urz_A           84 AP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--------P  153 (208)
T ss_dssp             CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------C
T ss_pred             CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------C
Confidence            32 245555555566666666666666666655543 3344455555555443332  2223333333321        1


Q ss_pred             cCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      .|....+.....++...|++++|...|++..+
T Consensus       154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            11122222333344445555555555555554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.22  E-value=4e-08  Score=80.53  Aligned_cols=218  Identities=10%  Similarity=0.025  Sum_probs=145.5

Q ss_pred             hhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCh
Q 015811           62 VSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES--RIVEAAALFTKLKAFGCEPNVITYNTLINGL----CRT---GHT  132 (400)
Q Consensus        62 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~  132 (400)
                      .++|+++++.++..++. +..+|+.--.++...+  +++++++.++.+.... +-+..+|+.-...+    ...   +++
T Consensus        49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence            35677777777776432 5556666666666666  7888888888887764 44555666544444    444   788


Q ss_pred             HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---
Q 015811          133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD--KAKELFLQMKYENLNPNVVTYTSLIHGFCHAND---  207 (400)
Q Consensus       133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  207 (400)
                      ++++.+++.+.+..       +.+..+|+.-.-++.+.|.++  ++++.++++.+... -|...|+.-...+.+.+.   
T Consensus       127 ~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          127 YREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred             HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence            99999999998875       667888888888888888888  99999999998754 377777766666666555   


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHcCCChHHH
Q 015811          208 ---WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN-ASRLLDLMVQCD--VRPNAFTYNTLMDGFCLTGKINRV  281 (400)
Q Consensus       208 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a  281 (400)
                         ++++++.++.++... +-|...++.....+.+.|+... +..+...+.+.+  -+.++..+..++..+.+.|+.++|
T Consensus       199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence               677777777777664 3466666666666666666333 334445444321  123455566666666666666666


Q ss_pred             HHHHHHHHh
Q 015811          282 KELFVSMES  290 (400)
Q Consensus       282 ~~~~~~~~~  290 (400)
                      .++++.+.+
T Consensus       278 ~~~~~~l~~  286 (306)
T 3dra_A          278 RTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.22  E-value=8.3e-11  Score=86.51  Aligned_cols=146  Identities=8%  Similarity=-0.058  Sum_probs=117.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR   96 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   96 (400)
                      |...+...|++++|++.++...... +.+...+..+...|.+.|++++|.+.|++.++..+ -+..+|..+..++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence            4566778899999999999987642 22455777889999999999999999999999753 378899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL-FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF  172 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (400)
                      +++|...|++..+.. +-+..++..+...+.+.|+.++|.+. +++..+..       |-++.+|......+...|+
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence            999999999999885 45678899999999999999876665 57777754       4566777777777776664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.21  E-value=3.8e-10  Score=92.87  Aligned_cols=167  Identities=9%  Similarity=-0.041  Sum_probs=101.7

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH-
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT-  121 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  121 (400)
                      +.+...+..+...+.+.|++++|...|++.++..+ .+...+..+..++...|++++|...++++...  .|+...... 
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            33445566666666777777777777777766542 25566666677777777777777777766554  233332222 


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChHhHHHHHH
Q 015811          122 LINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY-ENLNPNVVTYTSLIH  200 (400)
Q Consensus       122 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~  200 (400)
                      ....+...++.++|+..+++.....       |.+...+..+...+...|++++|...|..+.+ ..-..+...+..++.
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            2223445566666666676666653       45566666777777777777777777766543 311223556666777


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 015811          201 GFCHANDWNEAKGLLIEMV  219 (400)
Q Consensus       201 ~~~~~~~~~~a~~~~~~~~  219 (400)
                      .+...|+.++|...+++..
T Consensus       264 ~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          264 ILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHH
Confidence            7777777777666666544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.21  E-value=1.8e-08  Score=82.58  Aligned_cols=234  Identities=8%  Similarity=-0.030  Sum_probs=183.0

Q ss_pred             ccC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhccCCccHHHHHHHHHHH----Hhc-
Q 015811           23 KNK-HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG--QVSLGFVIFGRILRSCFAPNVVTFTSLIKGL----CAE-   94 (400)
Q Consensus        23 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-   94 (400)
                      +.| ..++|+.+++.++..+ +-+..+|+.--.++...|  +++++++.++.++..+++ +..+|+.-..++    ... 
T Consensus        44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence            444 4579999999999876 557788999999999999  999999999999998644 666776655555    445 


Q ss_pred             --CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           95 --SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI--VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        95 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                        +++++++.+++.+.+.. +.+..+|+.-.-.+.+.|.++  ++++.++++.+.+       +.|...|+.-...+...
T Consensus       122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHSS
T ss_pred             ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhc
Confidence              78999999999999876 668888888888888889888  9999999999876       56788888777777777


Q ss_pred             CC------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH-HHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcC
Q 015811          171 GF------VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWN-EAKGLLIEMVDQG--VQPNVVSSNVIMNELCKNG  241 (400)
Q Consensus       171 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~  241 (400)
                      +.      ++++++.+..++.... -|...|+.+-..+.+.|+.. .+..+..++.+.+  -+.++..+..++.+|.+.|
T Consensus       194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            76      8999999999988753 47888888888888877744 3555666555432  1346677888899999999


Q ss_pred             CchhHHHHHHHHHhC-CCCCcHHHHHHH
Q 015811          242 KMDNASRLLDLMVQC-DVRPNAFTYNTL  268 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l  268 (400)
                      +.++|.++++.+.+. + +.....|+..
T Consensus       273 ~~~~A~~~~~~l~~~~D-pir~~yW~~~  299 (306)
T 3dra_A          273 KYNESRTVYDLLKSKYN-PIRSNFWDYQ  299 (306)
T ss_dssp             CHHHHHHHHHHHHHTTC-GGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence            999999999999863 3 4444455443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=5.8e-09  Score=81.58  Aligned_cols=177  Identities=12%  Similarity=-0.028  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC----CHHHHHHH
Q 015811           28 DTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES----RIVEAAAL  103 (400)
Q Consensus        28 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  103 (400)
                      .+|++.|++..+.|   +...+..+...+...+++++|.++|++..+.+   +...+..|...|.. +    ++++|.++
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35777888887754   77888888888888999999999999988765   56677777777777 6    89999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCccccccc-CChhhHHHHHHHHHh----cCChH
Q 015811          104 FTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFK-PNTVTYSIIIDGLCK----EGFVD  174 (400)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~  174 (400)
                      |++..+.|   +...+..|...|..    .+++++|+.+|++..+.+.      . .....+..+..+|..    .++++
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~------~~~~~~a~~~Lg~~y~~g~g~~~d~~  146 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE------SDAAVDAQMLLGLIYASGVHGPEDDV  146 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT------SHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC------CcchHHHHHHHHHHHHcCCCCCCCHH
Confidence            99987754   66677778777776    7889999999998887651      0 126777788888877    77888


Q ss_pred             HHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 015811          175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHA-N-----DWNEAKGLLIEMVDQG  222 (400)
Q Consensus       175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  222 (400)
                      +|..+|++..+.  ..+...+..|...|... |     ++++|..+++...+.|
T Consensus       147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            888888888776  23445566666666543 2     7888888888877765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.17  E-value=3.2e-07  Score=81.18  Aligned_cols=199  Identities=11%  Similarity=-0.010  Sum_probs=118.0

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhc-cC-CccHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ-VSLGFVIFGRILRS-CF-APNVVTFTSL   87 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l   87 (400)
                      -.+|...+..+-. |+++.+..+|++....  .|+...|...+....+.++ .+....+|+..+.. |. ..+...|...
T Consensus        15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            3567777777655 8999999999999874  5799999999988877763 46677888887763 32 3367888888


Q ss_pred             HHHHH----hcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHh-------------cCChHHHHHHHHHHHcCCCc
Q 015811           88 IKGLC----AESRIVEAAALFTKLKAFGCEPN--VITYNTLINGLCR-------------TGHTIVALNLFKEMTNGNGE  148 (400)
Q Consensus        88 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~  148 (400)
                      +..+.    ..++.+.+.++|++.+..  ++.  ...|......-..             .+.+..|..+++.+...-  
T Consensus        92 i~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~--  167 (493)
T 2uy1_A           92 IEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI--  167 (493)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH--
Confidence            87754    346788899999999874  322  1222222111000             112223333343333210  


Q ss_pred             ccccccCChhhHHHHHHHHHhcC--C-----hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          149 IGVVFKPNTVTYSIIIDGLCKEG--F-----VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       149 ~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                          ...+...|...+..-...+  -     .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++....
T Consensus       168 ----~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          168 ----RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             ----HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                0012234444443322211  0     234556677766542 334566666666677777777777777777765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=6.7e-09  Score=82.12  Aligned_cols=185  Identities=11%  Similarity=0.004  Sum_probs=124.0

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccH--HHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLF-P-DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNV--VTFTS   86 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~   86 (400)
                      ...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++..+....  ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            456667788899999999999999999875321 1 1467888899999999999999999999986433111  23444


Q ss_pred             HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCc
Q 015811           87 LIKGLCA------------------ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGE  148 (400)
Q Consensus        87 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  148 (400)
                      +..++..                  .|++++|...|+++.+.. +-+..++......          ..+...+      
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH------
Confidence            4444443                  567888888888888662 2222222211110          0000111      


Q ss_pred             ccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811          149 IGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHANDWNEAKGLLIEMVDQG  222 (400)
Q Consensus       149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  222 (400)
                              ......+...+.+.|++++|+..|+.+.+..  |+.    ..+..+..++.+.|++++|.+.++.+...+
T Consensus       147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                    1122345677888888888888888888763  332    457778888888888888888888887764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=1.3e-08  Score=80.53  Aligned_cols=184  Identities=9%  Similarity=-0.004  Sum_probs=133.1

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-h---h
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV-I---T  118 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~  118 (400)
                      +...+..+...+...|++++|...|+++++..+..  ....+..+..++.+.|++++|...|+++.+..  |+. .   +
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            45566777788999999999999999999864321  23577888999999999999999999999874  332 2   3


Q ss_pred             HHHHHHHHHh------------------cCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHH
Q 015811          119 YNTLINGLCR------------------TGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELF  180 (400)
Q Consensus       119 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  180 (400)
                      +..+..++..                  .|+.++|+..|+++.+..       |-+...+.......          .+.
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~  143 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLK  143 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHH
Confidence            4444444443                  578999999999999865       33333332221111          011


Q ss_pred             HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 015811          181 LQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV----VSSNVIMNELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                      ..+.        .....+...+.+.|++++|...++.+++..  |+.    ..+..+..++.+.|++++|.+.++.+...
T Consensus       144 ~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          144 DRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            1111        112345677889999999999999999873  332    46788899999999999999999999886


Q ss_pred             C
Q 015811          257 D  257 (400)
Q Consensus       257 ~  257 (400)
                      +
T Consensus       214 ~  214 (225)
T 2yhc_A          214 S  214 (225)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.15  E-value=5.5e-09  Score=81.70  Aligned_cols=178  Identities=10%  Similarity=-0.022  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC----CchhHHHHH
Q 015811          175 KAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNG----KMDNASRLL  250 (400)
Q Consensus       175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~  250 (400)
                      +|+++|++..+.|   +...+..+...|...+++++|...|++..+.|   +...+..+...|.. +    ++++|...|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4667777777754   66777788888888889999999998888765   55667777777776 6    788899999


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHc----CCChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHh
Q 015811          251 DLMVQCDVRPNAFTYNTLMDGFCL----TGKINRVKELFVSMESMGCK-HDDFSYNILINGYCK----NKEVEEALSLYN  321 (400)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~  321 (400)
                      +...+.+   ++..+..|...|..    .+++++|...|++..+.+.. .++..+..|...|..    .+++++|..+|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8887754   56677778777876    78899999999988887521 126777788888887    788999999999


Q ss_pred             hhhhCCCCcCHHHHHHHHHHHhcc-c-----hHHHHHHHHHHHhhCCCC
Q 015811          322 ELPFKGIKPTVVTYNTLFHGLFEI-R-----QAERALKLFVEMQGNDVA  364 (400)
Q Consensus       322 ~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~~  364 (400)
                      +..+.  ..+...+..|...|... |     +.++|...|++..+.|..
T Consensus       154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            88776  23444566666666542 2     789999999888877643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.14  E-value=2.7e-09  Score=96.97  Aligned_cols=154  Identities=12%  Similarity=0.008  Sum_probs=114.6

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 015811           24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAAL  103 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  103 (400)
                      .|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478889999999887764 4467888899999999999999999999998875 33677888899999999999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc---CChHHHHHHH
Q 015811          104 FTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE---GFVDKAKELF  180 (400)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~  180 (400)
                      +++..+.. +.+...+..+..++...|++++|.+.+++..+..       +.+...+..+..++...   |++++|.+.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~  151 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALDVLSAQV  151 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            99988875 4467788888999999999999999999988764       45677888888888888   9999999999


Q ss_pred             HHHHHcC
Q 015811          181 LQMKYEN  187 (400)
Q Consensus       181 ~~~~~~~  187 (400)
                      ++..+.+
T Consensus       152 ~~al~~~  158 (568)
T 2vsy_A          152 RAAVAQG  158 (568)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhcC
Confidence            9988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.12  E-value=5.1e-10  Score=82.26  Aligned_cols=143  Identities=10%  Similarity=-0.090  Sum_probs=89.6

Q ss_pred             HHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 015811           54 NCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI  133 (400)
Q Consensus        54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  133 (400)
                      ..+...|++++|++.++...... +.+...+..+...|...|++++|++.|++..+.. +-+..+|..+..++...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence            34445567777777777766542 1234455567777777777777777777777664 445667777777777777777


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKEL-FLQMKYENLNPNVVTYTSLIHGFCHAN  206 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  206 (400)
                      +|+..|++..+..       |-+...+..+..++.+.|+++++.+. +++..+.. +-+..+|......+...|
T Consensus        83 ~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            7777777777654       34566677777777777777655443 46665542 224455555555544444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.12  E-value=6.4e-09  Score=85.50  Aligned_cols=162  Identities=14%  Similarity=0.031  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++....        |+....
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~  187 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchHHH
Confidence            3344444455555555555555555555442 2234444555555555555555555555544321        222211


Q ss_pred             HHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHH
Q 015811          161 SII-IDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP-NVVSSNVIMNELC  238 (400)
Q Consensus       161 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~  238 (400)
                      ... ...+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..+.
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            111 112334444444555555544432 2234444455555555555555555555555442110 1334444455555


Q ss_pred             hcCCchhHHHHHHH
Q 015811          239 KNGKMDNASRLLDL  252 (400)
Q Consensus       239 ~~~~~~~a~~~~~~  252 (400)
                      ..|+.++|...+++
T Consensus       267 ~~g~~~~a~~~~r~  280 (287)
T 3qou_A          267 ALGTGDALASXYRR  280 (287)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             HcCCCCcHHHHHHH
Confidence            55555555444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.11  E-value=3e-09  Score=88.49  Aligned_cols=165  Identities=10%  Similarity=-0.067  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--Ccc
Q 015811          159 TYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGV---QP--NVV  228 (400)
Q Consensus       159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~  228 (400)
                      .|......|...|++++|...|.+..+.    +..+ -..+|..+...|...|++++|...+++..+...   .+  ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444455566667777777666665432    1000 123555666666666666666666666554210   11  123


Q ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHhCCCC---C--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC----CCCC-HH
Q 015811          229 SSNVIMNELCKNGKMDNASRLLDLMVQCDVR---P--NAFTYNTLMDGFCLTGKINRVKELFVSMESMG----CKHD-DF  298 (400)
Q Consensus       229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~  298 (400)
                      ++..+..+|.. |++++|...+++..+....   +  ...++..+...+...|++++|...+++..+..    ..+. ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            44555555655 6666666666655442100   0  13445556666666666666666666665421    0011 12


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          299 SYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       299 ~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      .+..++.++...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44445555555666666666666665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.09  E-value=1.4e-09  Score=82.45  Aligned_cols=160  Identities=9%  Similarity=-0.012  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HH
Q 015811           49 YSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING-LC  127 (400)
Q Consensus        49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~  127 (400)
                      +......+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..  |+...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            3344445555555555555555555442 2244455555555555555555555555554432  222222111111 11


Q ss_pred             hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcC
Q 015811          128 RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNP-NVVTYTSLIHGFCHAN  206 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  206 (400)
                      ..+...+|+..+++.....       |.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|
T Consensus        86 ~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             hhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence            1112222444444444432       2234444445555555555555555555544432111 1234444444444455


Q ss_pred             CHHHHHHHHHHH
Q 015811          207 DWNEAKGLLIEM  218 (400)
Q Consensus       207 ~~~~a~~~~~~~  218 (400)
                      +.++|...+++.
T Consensus       159 ~~~~A~~~y~~a  170 (176)
T 2r5s_A          159 QGNAIASKYRRQ  170 (176)
T ss_dssp             SSCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            555554444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.09  E-value=4.9e-09  Score=95.25  Aligned_cols=154  Identities=9%  Similarity=-0.007  Sum_probs=117.6

Q ss_pred             cCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 015811           59 MGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNL  138 (400)
Q Consensus        59 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  138 (400)
                      .|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|++.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999988764 3367888999999999999999999999999874 45678888999999999999999999


Q ss_pred             HHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CCHHHHHHHH
Q 015811          139 FKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA---NDWNEAKGLL  215 (400)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~  215 (400)
                      +++..+..       +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+...   |++++|.+.+
T Consensus        80 ~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~  151 (568)
T 2vsy_A           80 LQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV  151 (568)
T ss_dssp             HHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred             HHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            99998865       5567889999999999999999999999998764 23567888899999999   9999999999


Q ss_pred             HHHHHCC
Q 015811          216 IEMVDQG  222 (400)
Q Consensus       216 ~~~~~~~  222 (400)
                      ++..+.+
T Consensus       152 ~~al~~~  158 (568)
T 2vsy_A          152 RAAVAQG  158 (568)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhcC
Confidence            9998875

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.06  E-value=1.8e-07  Score=82.81  Aligned_cols=209  Identities=9%  Similarity=-0.038  Sum_probs=129.6

Q ss_pred             ccC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC-HHHH
Q 015811           23 KNK-HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR-IVEA  100 (400)
Q Consensus        23 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a  100 (400)
                      +.| +++.|+.+|+.+...  -|.              |+++.+..+|++.+..  .|+...|...+....+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            456 488888888888764  233              8899999999999986  5699999999888877764 4556


Q ss_pred             HHHHHHHHHc-CC-CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh-----
Q 015811          101 AALFTKLKAF-GC-EPNVITYNTLINGLC----RTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK-----  169 (400)
Q Consensus       101 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----  169 (400)
                      ..+|+..... |. +.+...|...+..+.    ..++.+.+.++|++.....      ...-...|......-..     
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P------~~~~~~lw~~Y~~fE~~~~~~~  141 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP------MGSLSELWKDFENFELELNKIT  141 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC------CTTHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh------hhhHHHHHHHHHHHHHHhcccc
Confidence            7788877753 43 336677777776554    2456788999999998732      11112233322221111     


Q ss_pred             --------cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--CC-----HHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811          170 --------EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA--ND-----WNEAKGLLIEMVDQGVQPNVVSSNVIM  234 (400)
Q Consensus       170 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~  234 (400)
                              .+.+..|..+++.+...-...+...|...+..-...  +-     .+.+..++++++... +.+...|...+
T Consensus       142 ~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya  220 (493)
T 2uy1_A          142 GKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYS  220 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence                    122333444444443210011334555555443221  11     345677888888753 45567787788


Q ss_pred             HHHHhcCCchhHHHHHHHHHhC
Q 015811          235 NELCKNGKMDNASRLLDLMVQC  256 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~  256 (400)
                      ..+.+.|+++.|..++++....
T Consensus       221 ~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          221 EYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Confidence            8888999999999999998876

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.05  E-value=3.9e-09  Score=74.83  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=95.1

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.....+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++.++.+ +.+...|..
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~   86 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR   86 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence            34566788889999999999999999999998875 5578899999999999999999999999999875 336788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI  123 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  123 (400)
                      +..++...|++++|.+.|++..+.. |-+...+..+.
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~  122 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR  122 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence            9999999999999999999999874 33444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.01  E-value=2.6e-08  Score=82.83  Aligned_cols=135  Identities=10%  Similarity=-0.079  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--Ch
Q 015811          118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN---P--NV  192 (400)
Q Consensus       118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~  192 (400)
                      +|+.+...|...|++++|+..|++........+. ......++..+..+|.. |++++|+..|++..+....   +  ..
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~  155 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA  155 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence            3444444455555555555554443322100000 11123445555555544 5555555555544332100   0  02


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-cccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          193 VTYTSLIHGFCHANDWNEAKGLLIEMVDQG----VQPN-VVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      .++..+...+.+.|++++|+..+++..+..    ..+. ...+..+..++...|++++|...|++..
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            344455555555555555555555554321    0000 1133444445555566666666665555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.98  E-value=1.8e-08  Score=72.02  Aligned_cols=122  Identities=11%  Similarity=0.038  Sum_probs=101.6

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      +.|.++.+|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~   88 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT   88 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence            345677889999999999999999999999998765 4578899999999999999999999999999875 33678888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG  130 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  130 (400)
                      .+..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            99999999999999999999998774 334556666666665544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.97  E-value=1.3e-06  Score=72.35  Aligned_cols=176  Identities=9%  Similarity=-0.040  Sum_probs=125.1

Q ss_pred             HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-ChH
Q 015811           57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRT-G-HTI  133 (400)
Q Consensus        57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~  133 (400)
                      ...+..++|+++++.++..++. +..+|+.--.++...| .++++++.++.+.... +-+..+|+.-...+... + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            3344556788888888887533 6667777666776777 5888888888888775 45667777766666665 6 788


Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVD--------KAKELFLQMKYENLNPNVVTYTSLIHGFCHA  205 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (400)
                      +++.+++++.+..       +.+..+|+.-.-++.+.+.++        ++++.++++.+... -|...|+.....+.+.
T Consensus       143 ~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            9999999988875       567777776666665555555        88999999888753 4778888777777776


Q ss_pred             CC-------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCc
Q 015811          206 ND-------WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKM  243 (400)
Q Consensus       206 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  243 (400)
                      +.       ++++++.+++++... +-|...++.+-..+.+.|..
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred             cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence            65       677888887777764 44666666665555555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.97  E-value=9.1e-08  Score=74.77  Aligned_cols=129  Identities=10%  Similarity=-0.091  Sum_probs=112.7

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      ..+..+...+...|++++|+..|++..    .|+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence            345677888899999999999998874    5688999999999999999999999999999875 34778899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNV----------------ITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ...|++++|...|++..+.. +.+.                ..+..+..++...|++++|...|++.....
T Consensus        82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            99999999999999999864 2222                678889999999999999999999998865

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.97  E-value=3.5e-07  Score=75.83  Aligned_cols=183  Identities=10%  Similarity=-0.024  Sum_probs=141.6

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      ++.+-....+.+..++|+++++.+...+ +-+..+|+.--.++...| .++++++.++.++...++ +..+|+.-..++.
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~  134 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            3444444455666789999999999876 557788999888888888 599999999999998654 7888888777777


Q ss_pred             hc-C-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           93 AE-S-RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTI--------VALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        93 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      .. + ++++++++++++.+.. +.+..+|+...-.+.+.+.++        ++++.++++.+..       +-|...|+.
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~  206 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGW  206 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence            76 6 8899999999999775 557777777666665555555        8999999998875       668888888


Q ss_pred             HHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015811          163 IIDGLCKEGF-------VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHAND  207 (400)
Q Consensus       163 l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  207 (400)
                      ....+.+.+.       ++++++.+.+++... +-|...|+.+-..+.+.|+
T Consensus       207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            8888877776       688999998888764 3467777776666655554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.97  E-value=6.5e-09  Score=85.16  Aligned_cols=196  Identities=11%  Similarity=0.007  Sum_probs=125.9

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4567788888899999999999999999988764 4478888889999999999999999999988875 3367788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL  167 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (400)
                      ..++...|++++|...|++..+.. +.+...+...+....+   ..++..... .....      .+.+......+... 
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~------~~~~~~i~~~l~~l-  146 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKRWNS-IEERR------IHQESELHSYLTRL-  146 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTC------CCCCCHHHHHHHHH-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHHHHH-HHHHH------HhhhHHHHHHHHHH-
Confidence            899999999999999998887653 1111111112211111   111112211 11122      23444444433332 


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNV-VTYTSLIHGFCHA-NDWNEAKGLLIEMVD  220 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  220 (400)
                       ..|++++|.+.++...+.  .|+. .....+...+.+. +.++++.++|..+.+
T Consensus       147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence             257888888888776654  3443 3333333333333 557778888876654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.96  E-value=1.1e-07  Score=74.34  Aligned_cols=135  Identities=12%  Similarity=-0.108  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLC  127 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  127 (400)
                      .+..+...+...|++++|...|++..    .|+...+..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            45566778889999999999999874    5578899999999999999999999999999875 557788999999999


Q ss_pred             hcCChHHHHHHHHHHHcCCCccc--------c-cccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 015811          128 RTGHTIVALNLFKEMTNGNGEIG--------V-VFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN  187 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  187 (400)
                      ..|++++|+..|++.....+...        . ..+.....+..+..++...|++++|...|+...+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            99999999999999988642100        0 001123678888899999999999999999988763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.95  E-value=8.2e-09  Score=75.42  Aligned_cols=124  Identities=12%  Similarity=0.031  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      ....+.+.+...+.+.+++.+       . +.+...+..+...+.+.|++++|...|+++++.. +.+...|..+..++.
T Consensus        11 ~~~~l~~~~~~~~~l~~al~l-------~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~   81 (151)
T 3gyz_A           11 ISTAVIDAINSGATLKDINAI-------P-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ   81 (151)
T ss_dssp             HHHHHHHHHHTSCCTGGGCCS-------C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHhCC-------C-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            344555555555444444322       1 2234456666666667777777777777776654 225666666677777


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ..|++++|...|++..+.. +.++..|..+..+|...|++++|+..|++.....
T Consensus        82 ~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            7777777777777766654 3455666666777777777777777777666654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.95  E-value=4.4e-08  Score=69.04  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=95.0

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            6788889999999999999999999998765 4578889999999999999999999999998864 3467788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR  128 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  128 (400)
                      +...|++++|...++++.+.. +.+...+..+...+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence            999999999999999998774 3455555555555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.94  E-value=4e-08  Score=73.37  Aligned_cols=131  Identities=7%  Similarity=-0.015  Sum_probs=109.3

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            4567888889999999999999999998865 4578899999999999999999999999999875 3467888999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCChHHHHHHHHHHHc
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNT--LINGLCRTGHTIVALNLFKEMTN  144 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~  144 (400)
                      +...|++++|...|++..+.. +.+...+..  ....+...|++++|+..+.....
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999999999999999999874 334455533  44447788999999999887643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.93  E-value=2e-07  Score=76.95  Aligned_cols=161  Identities=12%  Similarity=0.029  Sum_probs=87.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCC-CCChH----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-----ccHHHH
Q 015811          164 IDGLCKEGFVDKAKELFLQMKYENL-NPNVV----TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNV-----VSSNVI  233 (400)
Q Consensus       164 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l  233 (400)
                      +..+...|++++|..++++..+... .|+..    .+..+...+...+++++|...+++..+.....+.     .+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4556666777777777766655321 11111    1223444555556677777777776663222111     145666


Q ss_pred             HHHHHhcCCchhHHHHHHHHHh----C-CCCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHhc----CCCCC-HHHHHH
Q 015811          234 MNELCKNGKMDNASRLLDLMVQ----C-DVRP-NAFTYNTLMDGFCLTGKINRVKELFVSMESM----GCKHD-DFSYNI  302 (400)
Q Consensus       234 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~  302 (400)
                      ..+|...|++++|...++.+.+    . +..+ ...++..+...|...|++++|...+++..+.    +..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            6666667777777666666652    1 1111 1235566666677777777777766665432    11111 455666


Q ss_pred             HHHHHHhcCC-HHHHHHHHhhhh
Q 015811          303 LINGYCKNKE-VEEALSLYNELP  324 (400)
Q Consensus       303 l~~~~~~~~~-~~~A~~~~~~~~  324 (400)
                      +..+|...|+ +++|...+++..
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHH
Confidence            6666666663 466666666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.92  E-value=2.5e-08  Score=70.99  Aligned_cols=122  Identities=10%  Similarity=0.079  Sum_probs=103.5

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSL   87 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   87 (400)
                      |.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.+.++...+.. +.+...+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~   86 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence            4566788889999999999999999999998764 4578889999999999999999999999999874 3367788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT  132 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  132 (400)
                      ..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999998874 44667777777777776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.91  E-value=5.7e-08  Score=68.72  Aligned_cols=99  Identities=9%  Similarity=0.003  Sum_probs=89.5

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      ...+......+.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~   90 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence            4578888999999999999999999999875 3478899999999999999999999999999885 5578889999999


Q ss_pred             HHhcCChHHHHHHHHHHHcCC
Q 015811          126 LCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +...|++++|++.|++..+..
T Consensus        91 ~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHHHHC
Confidence            999999999999999998864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=1.5e-07  Score=77.63  Aligned_cols=172  Identities=9%  Similarity=0.021  Sum_probs=119.3

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHhcCChhhHHHHHHHHHhccCC---cc--
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL------YTYSILINCFCKMGQVSLGFVIFGRILRSCFA---PN--   80 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--   80 (400)
                      ..+...+..+...|++++|.+.+++..+.... ..      ..+..+...+...|++++|...+++..+....   +.  
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34455677788899999999999888765322 22      22344556677788999999999988763211   11  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFG-CEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK  154 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  154 (400)
                      ..+++.+...|...|++++|...|++..+.. ..|+     ..++..+...|...|++++|+..+++.......... ..
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~  233 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MA  233 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HH
Confidence            4578888899999999999999998887320 0122     257788888999999999999999887653210000 11


Q ss_pred             CChhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 015811          155 PNTVTYSIIIDGLCKEGFVDKA-KELFLQMKY  185 (400)
Q Consensus       155 ~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  185 (400)
                      .-..+|..+..++.+.|++++| ...+++...
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            1256777888888889999888 776776653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=3.8e-07  Score=75.20  Aligned_cols=165  Identities=7%  Similarity=0.025  Sum_probs=121.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----
Q 015811          121 TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNT----VTYSIIIDGLCKEGFVDKAKELFLQMKYENLN-PN----  191 (400)
Q Consensus       121 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----  191 (400)
                      ..+..+...|++++|..++++......     ..++.    ..+..+...+...+++++|+..++++...... ++    
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            346678889999999999999887542     12221    13334666777788999999999999874322 22    


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHhC----CCCC-
Q 015811          192 VVTYTSLIHGFCHANDWNEAKGLLIEMVDQ-----GVQP-NVVSSNVIMNELCKNGKMDNASRLLDLMVQC----DVRP-  260 (400)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-  260 (400)
                      ..+++.+...|...|++++|...++++.+.     +..+ ...++..+..+|.+.|++++|...+++..+.    +..+ 
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            236888999999999999999999998842     1111 1236778889999999999999999887643    2122 


Q ss_pred             cHHHHHHHHHHHHcCCC-hHHHHHHHHHHHh
Q 015811          261 NAFTYNTLMDGFCLTGK-INRVKELFVSMES  290 (400)
Q Consensus       261 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~  290 (400)
                      -..++..+..++...|+ +++|...+++...
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            26688889999999995 6999999988754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.90  E-value=1.1e-07  Score=71.01  Aligned_cols=128  Identities=13%  Similarity=0.001  Sum_probs=91.3

Q ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811          229 SSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYC  308 (400)
Q Consensus       229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (400)
                      .+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            35556666777778888888777776654 4456777777788888888888888888887764 456777888888888


Q ss_pred             hcCCHHHHHHHHhhhhhCCCCcCHHHHHH--HHHHHhccchHHHHHHHHHHHh
Q 015811          309 KNKEVEEALSLYNELPFKGIKPTVVTYNT--LFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       309 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      ..|++++|...++++.+... .+...+..  ....+...|++++|+..+....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            88888888888888776532 23444433  3334667788888888887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.90  E-value=2.5e-08  Score=75.47  Aligned_cols=123  Identities=12%  Similarity=0.133  Sum_probs=103.0

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH-HHhcCCH--
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG-LCAESRI--   97 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--   97 (400)
                      +...|++++|+..++...+.. +.+...|..+..++...|++++|...|++..+... .+...+..+..+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence            456889999999999988765 55788999999999999999999999999998753 367788888888 7789998  


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           98 VEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        98 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++|...+++..+.. +.+...+..+...+...|++++|...++++....
T Consensus        98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            99999999999875 4567788889999999999999999999998865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.85  E-value=2.5e-08  Score=81.63  Aligned_cols=97  Identities=10%  Similarity=-0.046  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+..       +.+...+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~   75 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKAH   75 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHH
Confidence            3445555555556666666666666655542 2345555556666666666666666666665543       3344555


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      ..+..++...|++++|...|++..+
T Consensus        76 ~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           76 FFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5566666666666666666665544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.85  E-value=5.3e-08  Score=71.10  Aligned_cols=100  Identities=18%  Similarity=-0.016  Sum_probs=83.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++.....       |.+...
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~  106 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTP  106 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHH
Confidence            55677778888889999999999999988875 5577888888889999999999999999888865       556788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMKYEN  187 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  187 (400)
                      |..+..++...|++++|...|++..+..
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8888889999999999999999888763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.85  E-value=1.4e-07  Score=67.27  Aligned_cols=120  Identities=5%  Similarity=-0.071  Sum_probs=100.8

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      +.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence            3457788999999999999999999999999875 3377889999999999999999999999999875 4567888999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG  171 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (400)
                      ..++...|++++|...+++.....       +.+...+..+..++...|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence            999999999999999999998764       345566666666666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.84  E-value=6.4e-08  Score=73.22  Aligned_cols=120  Identities=9%  Similarity=0.055  Sum_probs=54.5

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCCh--HH
Q 015811          204 HANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKI--NR  280 (400)
Q Consensus       204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~  280 (400)
                      ..|++++|...++...+.. +.+...+..+..+|...|++++|...++.+.+.. +.+...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            3444555555555544432 2233444445555555555555555555544432 2234444444444 4444554  55


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          281 VKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       281 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      |...++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus       100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            555555554443 223444444555555555555555555554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.84  E-value=5.1e-07  Score=74.44  Aligned_cols=170  Identities=10%  Similarity=-0.043  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccccc
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFK  154 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  154 (400)
                      ...+...+..+...|++++|.+.+.+..+.... ..      ..+..+...+...|++++|+..+++........   ..
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~  150 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG---ID  150 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS---SC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---Cc
Confidence            445566777888999999999999888775321 21      123345566677889999999998887543210   01


Q ss_pred             CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 015811          155 PN--TVTYSIIIDGLCKEGFVDKAKELFLQMKYE-NLNPN-----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQG----  222 (400)
Q Consensus       155 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----  222 (400)
                      +.  ..+++.+...|...|++++|...+++..+. ...|+     ..++..+...|...|++++|...+++..+..    
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence            11  347778888888889999999888887632 00111     1467777788888888888888888766431    


Q ss_pred             CCC-CcccHHHHHHHHHhcCCchhH-HHHHHHHH
Q 015811          223 VQP-NVVSSNVIMNELCKNGKMDNA-SRLLDLMV  254 (400)
Q Consensus       223 ~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  254 (400)
                      ... -..++..+..+|...|++++| ...++...
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            000 134556666777777777777 55565543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.83  E-value=2.5e-07  Score=65.08  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            5678889999999999999999999999874 3467788899999999999999999999999875 5577888899999


Q ss_pred             HHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811          126 LCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus       126 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      +...|++++|...++++....       +.+...+..+..++..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-------PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHh
Confidence            999999999999999998754       3445555555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.83  E-value=5e-08  Score=75.57  Aligned_cols=163  Identities=8%  Similarity=-0.062  Sum_probs=113.0

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----c-CCccHHHHHHHHHHHHhcC
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS----C-FAPNVVTFTSLIKGLCAES   95 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~   95 (400)
                      +...|++++|.++++.+.. .......++..+...+...|++++|...+++..+.    + .+....++..+...+...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            3568999999996665543 22235678888999999999999999999988762    1 1224567788889999999


Q ss_pred             CHHHHHHHHHHHHHc----CCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           96 RIVEAAALFTKLKAF----GCE--PNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      ++++|...+++..+.    +-.  ....++..+...+...|++++|...+++........+. ......++..+..++..
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence            999999999887654    101  12345777888888999999999999887643210000 11112345677778888


Q ss_pred             cCChHHHHHHHHHHHH
Q 015811          170 EGFVDKAKELFLQMKY  185 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~  185 (400)
                      .|++++|.+.+++..+
T Consensus       160 ~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          160 EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            8899888888887664

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=4.7e-08  Score=71.40  Aligned_cols=99  Identities=11%  Similarity=-0.132  Sum_probs=66.2

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..+...+...|++++|...|+..+... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            44556666666777777777777777776654 2356666667777777777777777777776654 345566666777


Q ss_pred             HHHhcCChHHHHHHHHHHHcC
Q 015811          125 GLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      ++...|++++|+..|++....
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777776653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.82  E-value=1.2e-05  Score=66.44  Aligned_cols=198  Identities=10%  Similarity=-0.012  Sum_probs=139.8

Q ss_pred             hHHHHHHHH---HccCChh-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhccCC
Q 015811           13 SFNILLGCL---AKNKHYD-TVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFA   78 (400)
Q Consensus        13 ~~~~l~~~~---~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~   78 (400)
                      .|..+...+   .+.|.+. +|+.+++.+...+ +-+..+|+.--..+...+.          +++++.+++.++...++
T Consensus        28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK  106 (331)
T 3dss_A           28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK  106 (331)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence            444444433   3566665 8999999999876 4466777776665555443          67899999999987644


Q ss_pred             ccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHcCCCcccccccC
Q 015811           79 PNVVTFTSLIKGLCAES--RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH-TIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        79 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                       +..+|+.-..++...+  .+++++.+++.+.+.. +.+..+|+.-.-.+...|. ++++++.++.+....       +.
T Consensus       107 -ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~  177 (331)
T 3dss_A          107 -SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FS  177 (331)
T ss_dssp             -CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SC
T ss_pred             -CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CC
Confidence             8888888888887877  4899999999999886 5688888888878888888 589999999999875       66


Q ss_pred             ChhhHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-----------CCHHH
Q 015811          156 NTVTYSIIIDGLCKE--------------GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHA-----------NDWNE  210 (400)
Q Consensus       156 ~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~  210 (400)
                      |...|+.....+.+.              +.++++++.+....... +-|...|+-+-..+.+.           +.+++
T Consensus       178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~  256 (331)
T 3dss_A          178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS  256 (331)
T ss_dssp             CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence            778888777666655              34677777777777653 33556665444333333           22445


Q ss_pred             HHHHHHHHHHC
Q 015811          211 AKGLLIEMVDQ  221 (400)
Q Consensus       211 a~~~~~~~~~~  221 (400)
                      +++.++++.+.
T Consensus       257 el~~~~elle~  267 (331)
T 3dss_A          257 ELESCKELQEL  267 (331)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            55555555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.82  E-value=2.6e-07  Score=74.03  Aligned_cols=190  Identities=7%  Similarity=-0.089  Sum_probs=129.0

Q ss_pred             ccCChhHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChhhHHHHHHHHHhccC-----Ccc----------
Q 015811           23 KNKHYDTVLSLFKRLNSIGLFPDLYTYSIL-------INCFCKMGQVSLGFVIFGRILRSCF-----APN----------   80 (400)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~----------   80 (400)
                      ..++...|.+.|.++.+.. +-....|..+       ...+...++..+++..+..-....+     .-+          
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            5789999999999998875 4567888877       5666666666666666666554210     001          


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811           81 -----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        81 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                           ......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+......       .|
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------d~  167 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-------DK  167 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------CH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------Cc
Confidence                 2234456677778888888888888877543  433355566667888888888888887554321       11


Q ss_pred             --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811          156 --NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPN--VVTYTSLIHGFCHANDWNEAKGLLIEMVDQG  222 (400)
Q Consensus       156 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  222 (400)
                        ....+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence              123567777788888888888888888774332143  2355566677778888888888888888763

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=6.7e-08  Score=70.58  Aligned_cols=102  Identities=15%  Similarity=0.069  Sum_probs=91.4

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...|++.++..+ .+...+..
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~   94 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFH   94 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence            35677788889999999999999999999998875 55889999999999999999999999999998753 36788889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +..++...|++++|...|++..+.
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.81  E-value=1.3e-07  Score=66.98  Aligned_cols=100  Identities=7%  Similarity=-0.024  Sum_probs=84.2

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      .+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++..+ .+...+..+.
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg   79 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence            345678888888999999999999999988765 45788889999999999999999999999888753 3677888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 015811           89 KGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      .++...|++++|...|++..+.
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHh
Confidence            9999999999999999888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.80  E-value=5.2e-08  Score=70.70  Aligned_cols=102  Identities=12%  Similarity=0.001  Sum_probs=80.5

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .|.+...+..+...+.+.|++++|+..|+.+...+ +.+...|..+..++...|++++|...|+..++..+ .+...+..
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~   91 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFH   91 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHH
Confidence            34556677777888888888888888888887765 45777888888888888888888888888887653 36667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +..++...|++++|...|++..+.
T Consensus        92 lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           92 AAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888888888888888888888765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.80  E-value=7.7e-08  Score=80.92  Aligned_cols=132  Identities=17%  Similarity=0.078  Sum_probs=110.3

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD--------------LYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      +..+|..+...+.+.|++++|+..|++..+......              ..+|..+..++.+.|++++|+..+++.++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456788889999999999999999999988652211              588999999999999999999999999987


Q ss_pred             cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 015811           76 CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVA-LNLFKEMT  143 (400)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  143 (400)
                      . +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...|+.++| ...++.|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 3478889999999999999999999999999875 45677888888889889988888 44555553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=2.1e-07  Score=66.12  Aligned_cols=120  Identities=12%  Similarity=0.031  Sum_probs=102.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            45678888899999999999999999999874 3467888999999999999999999999999874 456778889999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCCh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFV  173 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (400)
                      .+...|++++|...+++.....       +.+...+..+..++...|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-------PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999998764       44667777787887777664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=1.4e-07  Score=73.04  Aligned_cols=163  Identities=13%  Similarity=-0.066  Sum_probs=112.3

Q ss_pred             HhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCC
Q 015811           57 CKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF----GCE-PNVITYNTLINGLCRTGH  131 (400)
Q Consensus        57 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~  131 (400)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+++..+.    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4678999999966655442 2346778889999999999999999999988762    111 234567788889999999


Q ss_pred             hHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--hHhHHHHHHHHHhcC
Q 015811          132 TIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN---LNPN--VVTYTSLIHGFCHAN  206 (400)
Q Consensus       132 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~  206 (400)
                      +++|...+++........+.........+..+...+...|++++|...+++.....   ..+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999987664210000000123457778888889999999999998876431   1111  233566777778888


Q ss_pred             CHHHHHHHHHHHHH
Q 015811          207 DWNEAKGLLIEMVD  220 (400)
Q Consensus       207 ~~~~a~~~~~~~~~  220 (400)
                      ++++|...+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.77  E-value=1.5e-07  Score=64.73  Aligned_cols=102  Identities=9%  Similarity=0.039  Sum_probs=83.7

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc--cHHHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP--NVVTFT   85 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~   85 (400)
                      |.+..+|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.  +...+.
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~   80 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA   80 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence            5677888888889999999999999999988765 4567788888888888999999999998888764 33  567788


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 015811           86 SLIKGLCAE-SRIVEAAALFTKLKAFG  111 (400)
Q Consensus        86 ~l~~~~~~~-~~~~~a~~~~~~~~~~~  111 (400)
                      .+..++... |++++|.+.++......
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            888888888 88888888888888764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.77  E-value=2e-07  Score=65.97  Aligned_cols=108  Identities=6%  Similarity=0.003  Sum_probs=87.5

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--cc----HHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PN----VVTF   84 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~   84 (400)
                      ..++..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++....  ++    ..+|
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            4578889999999999999999999998875 557889999999999999999999999998875321  11    2467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 015811           85 TSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNT  121 (400)
Q Consensus        85 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  121 (400)
                      ..+..++...|++++|++.|++..+.  .|++.+...
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~  121 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence            77888888999999999999998875  566655443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.76  E-value=3e-07  Score=77.34  Aligned_cols=152  Identities=9%  Similarity=-0.027  Sum_probs=110.9

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--------------HHHHHHHHH
Q 015811           24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--------------VVTFTSLIK   89 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~   89 (400)
                      .+++++|+..|+...... +.+...+..+...+.+.|++++|...|++.++......              ..+|..+..
T Consensus       126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            345556665555443321 12456778888888888999999999988887643321              477888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      ++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..|++..+..       +.+...+..+..++..
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHH
Confidence            8888888888888888888775 4567788888888888888888888888887764       4566777778888888


Q ss_pred             cCChHHH-HHHHHHHH
Q 015811          170 EGFVDKA-KELFLQMK  184 (400)
Q Consensus       170 ~~~~~~a-~~~~~~~~  184 (400)
                      .|+.+++ ...|..|.
T Consensus       277 ~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          277 IRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888777 44555554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.75  E-value=2.8e-07  Score=68.64  Aligned_cols=103  Identities=12%  Similarity=-0.006  Sum_probs=90.6

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTS   86 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   86 (400)
                      .+.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.. +.+...|..
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            44567788999999999999999999999998875 4578899999999999999999999999999875 336888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFG  111 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~  111 (400)
                      +..++...|++++|...|++..+..
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999999998763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.75  E-value=5e-07  Score=72.34  Aligned_cols=196  Identities=9%  Similarity=-0.057  Sum_probs=125.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCChHHHHHHHHHHHcCCCcc-cccc-----------
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTL-------INGLCRTGHTIVALNLFKEMTNGNGEI-GVVF-----------  153 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~-----------  153 (400)
                      ..++...|.+.|.++.+.. +-....|..+       ...+.+.++..+++..+..-....+.. ...+           
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            5788999999999998874 4456777777       455555555566666555554422110 0000           


Q ss_pred             --cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--ccc
Q 015811          154 --KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN--VVS  229 (400)
Q Consensus       154 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~  229 (400)
                        .......-.+...+...|++++|.++|..+...+  |+......+...+.+.+++++|+..|+...... .|.  ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence              0112334556777888999999999998877543  433355555567788888888888887543321 111  235


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHhCCCCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811          230 SNVIMNELCKNGKMDNASRLLDLMVQCDVRP--NAFTYNTLMDGFCLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  292 (400)
                      +..+..++...|++++|+..|++.......|  ..........++.+.|+.++|..+|+++....
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            6666777888888888888888776543213  23345556667777888888888888887763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=4.2e-07  Score=63.11  Aligned_cols=110  Identities=12%  Similarity=-0.004  Sum_probs=88.1

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ++..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            35677888888999999999999999988764 4578888888899999999999999999988874 336778888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      ++...|++++|.+.+++..+.. +.+...+..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  112 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL  112 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence            9999999999999999988764 3344444433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=1.8e-08  Score=77.89  Aligned_cols=98  Identities=13%  Similarity=0.027  Sum_probs=53.2

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---------------VVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      ...+..+...+...|++++|...|++.++......               ..++..+..++...|++++|...+++..+.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34555666666677777777777777665421100               144445555555555555555555555544


Q ss_pred             CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811          111 GCEPNVITYNTLINGLCRTGHTIVALNLFKEMTN  144 (400)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  144 (400)
                      . +.+...+..+..++...|++++|+..|++...
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2 33444455555555555555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.73  E-value=1.9e-07  Score=67.15  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             CCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHH
Q 015811            6 PSPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus         6 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      +.|.++..|..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...++..++.. +.+...+.
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~   81 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF   81 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence            445778899999999999999999999999998875 4578899999999999999999999999999875 33678889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      .+..++...|++++|...|++..+.
T Consensus        82 ~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           82 FLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999998865

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.73  E-value=1.1e-07  Score=68.95  Aligned_cols=100  Identities=11%  Similarity=-0.155  Sum_probs=88.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            45667778888999999999999999999875 3478889999999999999999999999999885 557788889999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCC
Q 015811          125 GLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++...|++++|+..|+......
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999988753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=3.5e-05  Score=63.63  Aligned_cols=165  Identities=8%  Similarity=-0.045  Sum_probs=106.7

Q ss_pred             HhcCChh-hHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           57 CKMGQVS-LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR----------IVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        57 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      .+.|.++ +|+++++.++..++. +..+|+.--.++...+.          +++++.+++.+.... +-+..+|+.-..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4556555 789999999887533 55566654444433332          567788888887764 4567777777777


Q ss_pred             HHhcC--ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811          126 LCRTG--HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF-VDKAKELFLQMKYENLNPNVVTYTSLIHGF  202 (400)
Q Consensus       126 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (400)
                      +...+  .+++++.+++.+.+..       +.|..+|+.-.-++...|. ++++++.+..+++..+ -|...|+.....+
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll  189 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred             HhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence            77767  4788888888888765       5677777777777777777 5788888888887653 3666666655544


Q ss_pred             Hhc--------------CCHHHHHHHHHHHHHCCCCCCcccHHH
Q 015811          203 CHA--------------NDWNEAKGLLIEMVDQGVQPNVVSSNV  232 (400)
Q Consensus       203 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~  232 (400)
                      .+.              +.++++++.+...+... +-|...|+.
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y  232 (331)
T 3dss_A          190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFY  232 (331)
T ss_dssp             HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            443              23555566665555543 224444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=9.9e-07  Score=64.15  Aligned_cols=112  Identities=12%  Similarity=0.062  Sum_probs=92.8

Q ss_pred             CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH
Q 015811            8 PPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT   83 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   83 (400)
                      |.+...+..+...+...|++++|+..|++..+..  |+    ...+..+..++...|++++|...+++..+.. +.+...
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  101 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA  101 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence            4577888999999999999999999999998764  55    6788889999999999999999999998874 336778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLI  123 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  123 (400)
                      +..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence            8889999999999999999999998873 33344444333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.71  E-value=1.4e-07  Score=67.06  Aligned_cols=113  Identities=10%  Similarity=0.073  Sum_probs=92.6

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC--cc----HHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA--PN----VVT   83 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~   83 (400)
                      ...+|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+....  ++    ..+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            45678889999999999999999999998765 557888999999999999999999999999876421  11    677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      +..+..++...|++++|.+.|++..+.  .|+......+...
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  121 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence            888899999999999999999999887  4565555544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.68  E-value=1.4e-06  Score=60.42  Aligned_cols=100  Identities=10%  Similarity=-0.026  Sum_probs=88.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            45677888899999999999999999999875 3377888899999999999999999999999875 446788889999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCC
Q 015811          125 GLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++...|++++|...+++.....
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC
Confidence            9999999999999999998864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.68  E-value=4.5e-07  Score=64.10  Aligned_cols=93  Identities=12%  Similarity=-0.020  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811          231 NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKN  310 (400)
Q Consensus       231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  310 (400)
                      ......+.+.|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..++...
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence            334444455555555555555544433 2334445555555555555555555555555443 33344455555555555


Q ss_pred             CCHHHHHHHHhhhhh
Q 015811          311 KEVEEALSLYNELPF  325 (400)
Q Consensus       311 ~~~~~A~~~~~~~~~  325 (400)
                      |++++|...|++..+
T Consensus        86 ~~~~~A~~~~~~al~  100 (126)
T 3upv_A           86 KEYASALETLDAART  100 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHH
Confidence            555555555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.67  E-value=8.6e-08  Score=74.00  Aligned_cols=150  Identities=11%  Similarity=-0.032  Sum_probs=90.8

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----------------
Q 015811           53 INCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV----------------  116 (400)
Q Consensus        53 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------  116 (400)
                      +......|+++++.+.++.-.... ......+..+...+...|++++|...|++..+.. +.+.                
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHH
Confidence            334445566666666665433321 1245567778888899999999999999998763 2222                


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 015811          117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYT  196 (400)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  196 (400)
                      .++..+..++...|++++|+..+++.....       +.+...+..+..++...|++++|...|++..+.. +.+...+.
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  160 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRN  160 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHH
Confidence            566667777777777777777777776653       4456667777777777777777777777776653 22445555


Q ss_pred             HHHHHHHhcCCHHHHH
Q 015811          197 SLIHGFCHANDWNEAK  212 (400)
Q Consensus       197 ~l~~~~~~~~~~~~a~  212 (400)
                      .+..++...++.+++.
T Consensus       161 ~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          161 SYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555555444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.63  E-value=9.6e-08  Score=84.35  Aligned_cols=127  Identities=6%  Similarity=-0.028  Sum_probs=103.2

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ..+|..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++.++... .+...+..+..+
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~   83 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS   83 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            3455566677888999999999999998875 45789999999999999999999999999999753 377889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLING--LCRTGHTIVALNLFK  140 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  140 (400)
                      |...|++++|.+.|++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999874 3345566666655  788899999999998

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.62  E-value=4.8e-07  Score=63.39  Aligned_cols=98  Identities=8%  Similarity=-0.117  Sum_probs=76.0

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      ...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++..+ .+...+..+..+
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~   94 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS   94 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            3456667777888888888888888887765 44777888888888888888888888888887653 366677788888


Q ss_pred             HHhcCCHHHHHHHHHHHHHc
Q 015811           91 LCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +...|++++|...+++..+.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888887754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.62  E-value=6.3e-07  Score=63.40  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      ...+..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|++.+++..+..+........-..+|
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3456677888888888888888888888774 456777888888888999999999888887764311000000012356


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 015811          161 SIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYT  196 (400)
Q Consensus       161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  196 (400)
                      ..+..++...|++++|++.|++....  .|+.....
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  120 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence            67778888899999999999988765  35554433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.61  E-value=9.6e-07  Score=60.62  Aligned_cols=90  Identities=12%  Similarity=-0.030  Sum_probs=35.7

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc--CHHHHHHHHHHHhcc
Q 015811          268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP--TVVTYNTLFHGLFEI  345 (400)
Q Consensus       268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~  345 (400)
                      +...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. +.  +...+..+...+...
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence            3333344444444444444443332 2233333444444444444444444444443321 11  233334444444444


Q ss_pred             -chHHHHHHHHHHHh
Q 015811          346 -RQAERALKLFVEMQ  359 (400)
Q Consensus       346 -~~~~~a~~~~~~~~  359 (400)
                       |++++|.+.+++..
T Consensus        90 ~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           90 EGKEVEAEIAEARAK  104 (112)
T ss_dssp             SSCSHHHHHHHHHHG
T ss_pred             hCCHHHHHHHHHHHh
Confidence             44444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.58  E-value=1.5e-06  Score=62.39  Aligned_cols=102  Identities=11%  Similarity=-0.077  Sum_probs=90.8

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      +.+...+..+...+...|++++|...|+..++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            4578889999999999999999999999999875 3367889999999999999999999999999875 5567889999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCC
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ..++...|++++|+..|++.....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHC
Confidence            999999999999999999987753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.58  E-value=1.3e-06  Score=64.95  Aligned_cols=100  Identities=9%  Similarity=-0.028  Sum_probs=89.7

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +...+..+...+...|++++|.+.|++.++.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            46678889999999999999999999999875 3378889999999999999999999999999885 556888999999


Q ss_pred             HHHhcCChHHHHHHHHHHHcCC
Q 015811          125 GLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++...|++++|+..|++.....
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.56  E-value=6.6e-07  Score=63.47  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=37.8

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCC--CCC----HHHHHHHHHH
Q 015811          233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGC--KHD----DFSYNILING  306 (400)
Q Consensus       233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~~  306 (400)
                      +...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+...  .++    ...+..+..+
T Consensus        10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~   88 (131)
T 1elr_A           10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence            3334444444444444444443332 22333344444444444444444444444433210  011    3334444444


Q ss_pred             HHhcCCHHHHHHHHhhhhh
Q 015811          307 YCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       307 ~~~~~~~~~A~~~~~~~~~  325 (400)
                      +...|++++|...++++.+
T Consensus        89 ~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           89 YFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHH
Confidence            4444444444444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=9.3e-07  Score=61.90  Aligned_cols=91  Identities=11%  Similarity=-0.043  Sum_probs=43.8

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccch
Q 015811          268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQ  347 (400)
Q Consensus       268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  347 (400)
                      +...+.+.|++++|...++++.+.. +.+...|..+..++...|++++|+..+++..+.... +...+..+..++...|+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            3344444555555555555554443 234444445555555555555555555554443211 33444444445555555


Q ss_pred             HHHHHHHHHHHhh
Q 015811          348 AERALKLFVEMQG  360 (400)
Q Consensus       348 ~~~a~~~~~~~~~  360 (400)
                      +++|+..+++..+
T Consensus       101 ~~~A~~~~~~al~  113 (121)
T 1hxi_A          101 ANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.55  E-value=6.1e-06  Score=72.14  Aligned_cols=203  Identities=11%  Similarity=-0.021  Sum_probs=143.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCC----------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPD----------------LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-P   79 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~   79 (400)
                      -...+.+.|++++|++.|..+.+......                ..++..+...|...|++++|.+.+..+...-.. +
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            35667889999999999999987542211                134778899999999999999999988763111 1


Q ss_pred             cH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccc
Q 015811           80 NV----VTFTSLIKGLCAESRIVEAAALFTKLKAF----GCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIG  150 (400)
Q Consensus        80 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  150 (400)
                      +.    .+.+.+...+...|+.+.|..++......    +..+ -..++..+...+...|++++|..+++++........
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            21    23334444555678999999998887642    2222 245677889999999999999999998765321100


Q ss_pred             ccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--hHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          151 VVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--NLN-P-N--VVTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      . .+....++..++..|...|++++|..++++....  ... | .  ...+..+...+...+++++|...+.+..+
T Consensus       170 ~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          170 D-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             C-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             c-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            0 1122457888899999999999999999887643  111 1 1  24456666777788999999988877764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=3.9e-06  Score=60.94  Aligned_cols=101  Identities=11%  Similarity=-0.056  Sum_probs=88.4

Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 015811           43 FPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN----VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT  118 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  118 (400)
                      +.+...+..+...+...|++++|...|++..+..  |+    ...+..+..++...|++++|...+++..+.. +.+...
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  101 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA  101 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence            3467888999999999999999999999999874  44    6788889999999999999999999998874 446778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          119 YNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       119 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +..+..++...|++++|...|++.....
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            8889999999999999999999998754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.50  E-value=6.2e-06  Score=58.29  Aligned_cols=97  Identities=13%  Similarity=0.042  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc---HHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDL---YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN---VVTFTS   86 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~   86 (400)
                      .+..+...+.+.|++++|+..|+.+.+.. +.+.   ..+..+..++...|++++|...|+.+.+..+. +   ...+..
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence            45567788889999999999999998764 2233   57888889999999999999999999886432 3   566788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFG  111 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~  111 (400)
                      +..++...|++++|...|+++.+..
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            8899999999999999999998773

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.1e-05  Score=70.40  Aligned_cols=165  Identities=8%  Similarity=-0.078  Sum_probs=73.6

Q ss_pred             HHHHhcCChhhHHHHHHHHHhccCCccH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCh
Q 015811           54 NCFCKMGQVSLGFVIFGRILRSCFAPNV----------------VTFTSLIKGLCAESRIVEAAALFTKLKAFG-CEPNV  116 (400)
Q Consensus        54 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~  116 (400)
                      ..+.+.|++++|.+.|..+++.......                ..+..+...|...|++++|.+.+..+...- ..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            4455667777777777766664322110                124455555666666666666555544321 01111


Q ss_pred             hh---HHHHH-HHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--
Q 015811          117 IT---YNTLI-NGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE--NL--  188 (400)
Q Consensus       117 ~~---~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--  188 (400)
                      .+   ....+ ..+...|+.++|..+++........... ......++..+...+...|++++|..+++.+...  +.  
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            11   11111 1122345555555555555544321100 0001223444555555555555555555554432  11  


Q ss_pred             CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811          189 NP-NVVTYTSLIHGFCHANDWNEAKGLLIEMV  219 (400)
Q Consensus       189 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  219 (400)
                      .+ ...++..++..|...|++++|..++++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            01 12344445555555555555555555444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.45  E-value=1.7e-06  Score=76.13  Aligned_cols=130  Identities=11%  Similarity=0.006  Sum_probs=98.3

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD---------------LYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      ...|..+...+.+.|++++|+..|++..+.. +.+               ...|..+..++.+.|++++|+..++++++.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4567778888888999999999999887753 222               578888888889999999999999998887


Q ss_pred             cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH-HHHHHH
Q 015811           76 CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN-LFKEMT  143 (400)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~  143 (400)
                      .. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+ .+..|.
T Consensus       347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53 367788888888999999999999999888764 4456677778888888777776653 444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.43  E-value=7.5e-06  Score=57.84  Aligned_cols=92  Identities=16%  Similarity=0.078  Sum_probs=46.8

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhCCCCCcH---HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHH
Q 015811          233 IMNELCKNGKMDNASRLLDLMVQCDVRPNA---FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHD---DFSYNILING  306 (400)
Q Consensus       233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~  306 (400)
                      +...+...|++++|...++.+.+.. +.+.   ..+..+..++...|++++|...++++.+.. +.+   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            3444555555555555555555432 1112   344445555555555555555555555443 222   3444555555


Q ss_pred             HHhcCCHHHHHHHHhhhhhC
Q 015811          307 YCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       307 ~~~~~~~~~A~~~~~~~~~~  326 (400)
                      +...|++++|...|+++.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55555666666555555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.42  E-value=1.9e-06  Score=63.70  Aligned_cols=137  Identities=10%  Similarity=-0.005  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCC-c----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hh
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFA-P----NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-PN----VI  117 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~  117 (400)
                      ++..+...+...|++++|...+++..+.... +    ...++..+...+...|++++|...+++..+.... .+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444445555555555555555554432110 0    0124555556666666666666666655432100 01    23


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                      ++..+...+...|++++|...+++........+. .......+..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4555566666667777776666665432100000 011123455556666666666666666666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.42  E-value=7.4e-06  Score=71.99  Aligned_cols=151  Identities=11%  Similarity=0.015  Sum_probs=114.8

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCcc--------------HHHHHHHHHH
Q 015811           25 KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPN--------------VVTFTSLIKG   90 (400)
Q Consensus        25 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~   90 (400)
                      +++++|+..|+...... +.....+..+...+.+.|+++.|...|++.++......              ...|..+..+
T Consensus       248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34555555554433221 12456788888999999999999999999998643321              5788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhc
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                      |.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+..       +.+...+..+..++.+.
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKA  398 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence            999999999999999999875 5578889999999999999999999999999875       45667888888888888


Q ss_pred             CChHHHHH-HHHHHH
Q 015811          171 GFVDKAKE-LFLQMK  184 (400)
Q Consensus       171 ~~~~~a~~-~~~~~~  184 (400)
                      ++.+++.+ .+..|.
T Consensus       399 ~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          399 KEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            88877664 444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.41  E-value=9.4e-07  Score=61.48  Aligned_cols=87  Identities=11%  Similarity=-0.011  Sum_probs=67.5

Q ss_pred             ccCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHH
Q 015811           23 KNKHYDTVLSLFKRLNSIG--LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEA  100 (400)
Q Consensus        23 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  100 (400)
                      ..|++++|+..|++..+.+  -+.+...+..+..++...|++++|...|++.++..+. +...+..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            4688899999999988764  1234567888888899999999999999999887533 677888888899999999999


Q ss_pred             HHHHHHHHHc
Q 015811          101 AALFTKLKAF  110 (400)
Q Consensus       101 ~~~~~~~~~~  110 (400)
                      ...+++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988876

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.39  E-value=2e-06  Score=76.00  Aligned_cols=121  Identities=12%  Similarity=0.068  Sum_probs=86.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCC
Q 015811          198 LIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGK  277 (400)
Q Consensus       198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  277 (400)
                      +...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            3445667788888888888888763 3356777888888888888888888888888765 4467778888888888888


Q ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHh
Q 015811          278 INRVKELFVSMESMGCKHDDFSYNILING--YCKNKEVEEALSLYN  321 (400)
Q Consensus       278 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~  321 (400)
                      +++|...++++.+.. +.+...+..+..+  +.+.|++++|...++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888888887764 3344455555555  777788888888887

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.38  E-value=5.3e-06  Score=61.49  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=77.8

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhC-------CC----------CCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSI-------GL----------FPDLYTYSILINCFCKMGQVSLGFVIFGRIL   73 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   73 (400)
                      +..+......+.+.|++++|+..|++....       +-          +.+...|..+..++.+.|++++|+..++..+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456778888999999999999999998764       00          1234577778888888888888888888888


Q ss_pred             hccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           74 RSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +.. +.+...|..+..++...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            765 336777888888888888888888888888876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.37  E-value=3.6e-06  Score=71.63  Aligned_cols=122  Identities=10%  Similarity=0.013  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHh----------------CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNS----------------IGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC   76 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   76 (400)
                      .|..+...+.+.|++++|+..|++..+                .. +.+..+|..+..++.+.|++++|++.+++.++..
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            477888899999999999999999876                21 2345788889999999999999999999999875


Q ss_pred             CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 015811           77 FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                       +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             3367888889999999999999999999998874 3356666667777666666655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.34  E-value=6.5e-06  Score=60.69  Aligned_cols=139  Identities=12%  Similarity=-0.009  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811           81 VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCE-PN----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                      ..++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++........+. ...
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~   87 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHH
Confidence            446777888888899999999998887754211 11    136677788888888999888888887653210000 011


Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYE----NLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      ....+..+..++...|++++|.+.+++..+.    +..+ ....+..+...+...|++++|...+++..+
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            1345666777778888888888888776543    1110 123455566666677777777777766554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.34  E-value=1.3e-06  Score=60.78  Aligned_cols=88  Identities=9%  Similarity=-0.031  Sum_probs=72.8

Q ss_pred             hcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 015811           58 KMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVA  135 (400)
Q Consensus        58 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  135 (400)
                      ..|++++|+..|++.++.+  -+.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            4688999999999999874  23466788899999999999999999999999885 45678888999999999999999


Q ss_pred             HHHHHHHHcCC
Q 015811          136 LNLFKEMTNGN  146 (400)
Q Consensus       136 ~~~~~~~~~~~  146 (400)
                      +..+++.....
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999988753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.33  E-value=9.2e-06  Score=69.10  Aligned_cols=124  Identities=10%  Similarity=-0.032  Sum_probs=100.5

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhc---------------cCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRS---------------CFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFG  111 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  111 (400)
                      ..+..+...+.+.|++++|.+.|++.++.               ..+.+..+|..+..++.+.|++++|+..+++.++..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            45777888899999999999999998871               112356788889999999999999999999999875


Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHH
Q 015811          112 CEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKE  178 (400)
Q Consensus       112 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  178 (400)
                       +.+...+..+..+|...|++++|+..|++..+..       +.+...+..+..++...++.+++.+
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             4567888999999999999999999999998864       4456677777777776666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.32  E-value=8.1e-05  Score=67.04  Aligned_cols=175  Identities=11%  Similarity=-0.006  Sum_probs=140.4

Q ss_pred             ccCC-hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           23 KNKH-YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ----------VSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        23 ~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      +.|+ .++|++.++.+.... +-+..+|+.--.++...|+          ++++++.++.+++..++ +..+|..-..++
T Consensus        40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            3444 568899999999876 4577888888888887777          89999999999998654 888999888888


Q ss_pred             HhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           92 CAES--RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTG-HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        92 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      .+.+  +++++++.++++.+.. +.+..+|+.....+...| .++++++.++++.+..       +-+...|+.....+.
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-------p~n~saW~~r~~ll~  189 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLP  189 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------CCCccHHHHHHHHHH
Confidence            8999  7799999999999986 568888988888888888 8999999999998875       667888888777766


Q ss_pred             hc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 015811          169 KE--------------GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDW  208 (400)
Q Consensus       169 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  208 (400)
                      +.              +.++++++.+.++.... +-+...|..+-..+.+.++.
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred             hhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence            63              45688888888888764 33667777776666666653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.31  E-value=2.1e-05  Score=58.21  Aligned_cols=100  Identities=9%  Similarity=-0.074  Sum_probs=85.9

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhc--------c---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRS--------C---------FAPNVVTFTSLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      ...+......+.+.|+++.|...|.+.+..        .         .+.+...|..+..++.+.|++++|+..+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456778888999999999999999998875        0         12245678889999999999999999999999


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          109 AFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +.. +.+...|..+..++...|++++|...|++.....
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            885 5578889999999999999999999999998854

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.22  E-value=8.2e-06  Score=55.83  Aligned_cols=98  Identities=11%  Similarity=-0.007  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCC-------hhh
Q 015811          297 DFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAAD-------TCT  369 (400)
Q Consensus       297 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~  369 (400)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+.  .|+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence            3445555566666666666666666655542 124555555666666666666666666666553  233       334


Q ss_pred             HHHHHHHhhcCCcchhhHhhhhCCCCCC
Q 015811          370 YRTFIDGLCVRPQVRFTYARRKGNSGNT  397 (400)
Q Consensus       370 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~  397 (400)
                      +..+..++...|++++|...++.+....
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~  108 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDELPEGY  108 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence            5555556666667777766666655443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.22  E-value=6.6e-06  Score=69.17  Aligned_cols=147  Identities=8%  Similarity=-0.045  Sum_probs=56.9

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL  126 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (400)
                      ..+..+...+.+.|++++|...|++.++..  |+...       +...++..++...+          ...+|..+..++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence            345555566666677777777777666542  22221       11122222221111          012445555555


Q ss_pred             HhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-HHhc
Q 015811          127 CRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHG-FCHA  205 (400)
Q Consensus       127 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  205 (400)
                      .+.|++++|+..+++.....       +.+...|..+..++...|++++|...|++..+.. +.+...+..+... ....
T Consensus       241 ~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence            55666666666665555533       3344555555556666666666666665554331 1122233333322 1223


Q ss_pred             CCHHHHHHHHHHHHH
Q 015811          206 NDWNEAKGLLIEMVD  220 (400)
Q Consensus       206 ~~~~~a~~~~~~~~~  220 (400)
                      +..+.+...+..+..
T Consensus       313 ~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          313 ALYQKQKEMYKGIFK  327 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHHhhC
Confidence            444555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.22  E-value=4.5e-06  Score=70.17  Aligned_cols=132  Identities=11%  Similarity=0.050  Sum_probs=82.1

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHH------------------hHHHHHHHHHhcCChhhHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY------------------TYSILINCFCKMGQVSLGFVIFGRI   72 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~   72 (400)
                      ...+..+...+.+.|++++|+..|++.....  |+..                  .|..+..++.+.|++++|+..+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567778888999999999999999987753  4433                  7888889999999999999999999


Q ss_pred             HhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHcCC
Q 015811           73 LRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLING-LCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      ++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+++...|..+....
T Consensus       257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9875 3377889999999999999999999999987653 2344455555444 234556677788888876643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.20  E-value=2.6e-05  Score=56.41  Aligned_cols=96  Identities=16%  Similarity=0.028  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C-----CH-----HhHHHHHHHHHhcCChhhHHHHHHHHHhc------
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLF-P-----DL-----YTYSILINCFCKMGQVSLGFVIFGRILRS------   75 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------   75 (400)
                      .+......+.+.|++++|+..|++..+.... |     +.     ..|..+..++.+.|++++|+..+++.++.      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            3455566666777777777777777654311 0     11     15555555555555555555555555543      


Q ss_pred             -cCCccHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811           76 -CFAPNVVTF----TSLIKGLCAESRIVEAAALFTKLKA  109 (400)
Q Consensus        76 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~  109 (400)
                       .+ .+...|    .....++...|++++|+..|++..+
T Consensus        93 ~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           93 LNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence             21 133344    4445555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.19  E-value=0.00017  Score=64.92  Aligned_cols=177  Identities=9%  Similarity=-0.069  Sum_probs=137.3

Q ss_pred             hcC-ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811           58 KMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR----------IVEAAALFTKLKAFGCEPNVITYNTLINGL  126 (400)
Q Consensus        58 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (400)
                      +.| ..++|++.+++++..++. +..+|+.--.++...|+          ++++++.++.+.+.. +-+..+|+.-..++
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            344 446789999999987643 66777776666666666          899999999999876 55778888888888


Q ss_pred             HhcC--ChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015811          127 CRTG--HTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG-FVDKAKELFLQMKYENLNPNVVTYTSLIHGFC  203 (400)
Q Consensus       127 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  203 (400)
                      .+.+  +++++++.++++.+..       +.+..+|+.-..++.+.| .++++++.+.++++..+ -+...|+.....+.
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~  189 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP  189 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHH
Confidence            8889  6799999999999876       668888888888888888 89999999999987653 36777777666655


Q ss_pred             hc--------------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811          204 HA--------------NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN  245 (400)
Q Consensus       204 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  245 (400)
                      +.              +.++++++.+.+.+... +-+...|...-..+.+.++.++
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             hhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence            52              45788999998888764 4466777777777766666443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.19  E-value=4e-05  Score=55.39  Aligned_cols=100  Identities=13%  Similarity=0.020  Sum_probs=83.3

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP------N-----VVTFTSLIKGLCAESRIVEAAALFTKLKAF----  110 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  110 (400)
                      ...+......+.+.|++++|+..|++.++..+..      +     ...|..+..++.+.|++++|+..+++.++.    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            3456677788889999999999999999864331      2     238999999999999999999999999986    


Q ss_pred             ---CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          111 ---GCEPNVITY----NTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       111 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                         . +-+...|    .....++...|++++|+..|++..+..
T Consensus        91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence               4 3456678    889999999999999999999987743

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.12  E-value=9.8e-05  Score=52.80  Aligned_cols=112  Identities=9%  Similarity=-0.075  Sum_probs=95.0

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh----cCCHHH
Q 015811           24 NKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA----ESRIVE   99 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~   99 (400)
                      .+++++|+++|++..+.| .|+..    +...|...+.+++|.++|++..+.|   +...+..|...|..    .+++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            457899999999999987 44444    6677777788899999999999875   66778888888888    899999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCC
Q 015811          100 AAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  146 (400)
                      |...|++..+.|   ++..+..|...|..    .++.++|..+|++..+.+
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999999999875   67778888888888    899999999999998876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.09  E-value=0.00014  Score=51.93  Aligned_cols=109  Identities=9%  Similarity=0.013  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHc----CCChHHHH
Q 015811          207 DWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCL----TGKINRVK  282 (400)
Q Consensus       207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~  282 (400)
                      ++++|...|++..+.| .++  ..  +...|...+..++|.+.|++..+.+   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4455555555555544 111  11  3444444444445555555554433   33344444444444    44555555


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHhhhhhC
Q 015811          283 ELFVSMESMGCKHDDFSYNILINGYCK----NKEVEEALSLYNELPFK  326 (400)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~  326 (400)
                      ..|++..+.|   ++..+..|...|..    .+++++|..+|++..+.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5555554433   33444444444444    44455555555444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.08  E-value=2.5e-05  Score=68.68  Aligned_cols=125  Identities=7%  Similarity=-0.036  Sum_probs=92.3

Q ss_pred             HHHhcCCchhHHHHHHHHHhCC---CC---C-cHHHHHHHHHHHHcCCChHHHHHHHHHHHh-----cCC--CCCHHHHH
Q 015811          236 ELCKNGKMDNASRLLDLMVQCD---VR---P-NAFTYNTLMDGFCLTGKINRVKELFVSMES-----MGC--KHDDFSYN  301 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~---~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~  301 (400)
                      .+...|++++|..++++..+..   ..   | ...+++.|..+|...|++++|..++++..+     .|.  +....+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            4567899999999988775431   11   2 246788999999999999999999988754     231  12245688


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhhhhC-----CC-CcCHH-HHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          302 ILINGYCKNKEVEEALSLYNELPFK-----GI-KPTVV-TYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       302 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .|...|...|++++|..++++..+.     |. .|+.. +...+-.++...+.+++|..++.++++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999987642     32 23333 445556677889999999999999875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.07  E-value=4.9e-05  Score=52.35  Aligned_cols=81  Identities=9%  Similarity=0.009  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhh
Q 015811          244 DNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNEL  323 (400)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  323 (400)
                      +.|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35666777776654 4456777777777888888888888888877765 445667777788888888888888888777


Q ss_pred             hhC
Q 015811          324 PFK  326 (400)
Q Consensus       324 ~~~  326 (400)
                      .+.
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.07  E-value=3.3e-05  Score=50.49  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=46.0

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      +...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+ .+...+..+..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            34556666666666666666666666665543 33455666666666666666666666666665432 23444444444


Q ss_pred             HH
Q 015811           90 GL   91 (400)
Q Consensus        90 ~~   91 (400)
                      ++
T Consensus        86 ~~   87 (91)
T 1na3_A           86 AK   87 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.07  E-value=1.8e-05  Score=69.46  Aligned_cols=125  Identities=11%  Similarity=-0.025  Sum_probs=95.4

Q ss_pred             HHHccCChhHHHHHHHHHHhCC---CCC----CHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----c--CCccHHHHH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSIG---LFP----DLYTYSILINCFCKMGQVSLGFVIFGRILRS-----C--FAPNVVTFT   85 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~   85 (400)
                      .+..+|++++|+.++++.++..   ..|    ...+++.+..+|...|++++|..++++.++.     |  .+....+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3567999999999999876531   112    2467899999999999999999999988752     2  122355788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHc
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAF-----GCE-P-NVITYNTLINGLCRTGHTIVALNLFKEMTN  144 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  144 (400)
                      .|...|...|++++|+.++++..+.     |.. | ...+.+.+..++...+.+++|+.+|..+.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987642     411 1 233455667778888999999999998865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.01  E-value=6.6e-06  Score=56.33  Aligned_cols=58  Identities=9%  Similarity=0.064  Sum_probs=23.5

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          266 NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      ..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            8 KEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            333334444444444444444443332 2233334444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.99  E-value=3.4e-05  Score=55.64  Aligned_cols=100  Identities=8%  Similarity=-0.024  Sum_probs=81.6

Q ss_pred             HccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----------hhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           22 AKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQV----------SLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        22 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      .+.+.+++|++.++...+.. +.+...|..+..++...+++          ++|+..|++.++..+. +..+|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            45667899999999998876 56889999999999888765          5999999999998643 677888999999


Q ss_pred             HhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015811           92 CAES-----------RIVEAAALFTKLKAFGCEPNVITYNTLING  125 (400)
Q Consensus        92 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  125 (400)
                      ...|           ++++|++.|++..+.  .|+...|...+..
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~  133 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            8774           899999999999987  6776666555544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.96  E-value=0.00011  Score=50.59  Aligned_cols=80  Identities=13%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811           29 TVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        29 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      +|+..|++..+.. +.+...+..+..++...|++++|...|++.++.. +.+...|..+..++...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566666666554 3456667777777777777777777777776654 2245566666777777777777777777665


Q ss_pred             Hc
Q 015811          109 AF  110 (400)
Q Consensus       109 ~~  110 (400)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.95  E-value=3.9e-05  Score=51.36  Aligned_cols=68  Identities=15%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      .|.+..+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++.++.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35677888888888888888888888888887765 446678888888888888888888888887754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.91  E-value=4.5e-05  Score=55.02  Aligned_cols=70  Identities=7%  Similarity=-0.055  Sum_probs=36.3

Q ss_pred             hcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015811          239 KNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI----------NRVKELFVSMESMGCKHDDFSYNILINGYC  308 (400)
Q Consensus       239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (400)
                      +.+.+++|...++...+.. +.+...|..+..++...+++          ++|+..|++.++.+ +.+...|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            3445555666666555544 34555555555555555443          35555555555543 334445555555555


Q ss_pred             hc
Q 015811          309 KN  310 (400)
Q Consensus       309 ~~  310 (400)
                      ..
T Consensus        92 ~l   93 (158)
T 1zu2_A           92 SF   93 (158)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.89  E-value=0.00018  Score=46.85  Aligned_cols=63  Identities=16%  Similarity=0.165  Sum_probs=31.8

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           47 YTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        47 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344445555555555555555555555442 123444445555555555555555555555444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.73  E-value=0.00018  Score=48.01  Aligned_cols=63  Identities=19%  Similarity=0.108  Sum_probs=32.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      +...+..+..++...|++++|...|++.++..+. +...|..+..+|...|++++|.+.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555555555554321 34445555555555555555555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.71  E-value=0.0017  Score=53.95  Aligned_cols=137  Identities=8%  Similarity=-0.081  Sum_probs=95.9

Q ss_pred             CCCCcchHHHHHHHHHc--c---CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cC-Ch-hhH---HHHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAK--N---KHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK---MG-QV-SLG---FVIFGRIL   73 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~~   73 (400)
                      .|.+..+|...+++...  .   .+..+|+.+|++..+.. +-....|..+..++..   .+ .. ...   ...++...
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            56788999998877643  2   34589999999999875 3344555544444431   11 11 111   11222211


Q ss_pred             h-ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           74 R-SCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        74 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      . ...+.+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.|++....+
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            1 1225577788888877788899999999999999985  788788888889999999999999999998853

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.36  E-value=0.0083  Score=49.92  Aligned_cols=142  Identities=15%  Similarity=0.084  Sum_probs=75.9

Q ss_pred             CCChHhHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh---cCCch--hH---HHHHHHHH
Q 015811          189 NPNVVTYTSLIHGFCH--A---NDWNEAKGLLIEMVDQGVQPN-VVSSNVIMNELCK---NGKMD--NA---SRLLDLMV  254 (400)
Q Consensus       189 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~--~a---~~~~~~~~  254 (400)
                      +.+...|...+++...  .   .+..+|..+|++.++..  |+ ...+..+..+|..   .+.+.  ..   ...+....
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            4566777776665432  2   23577888888888763  33 2344443333321   11001  11   11111111


Q ss_pred             h-CCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHH
Q 015811          255 Q-CDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVV  333 (400)
Q Consensus       255 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  333 (400)
                      . ...+.++..+..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|...+++....  .|...
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~  344 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN  344 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence            1 1124455566666555555677777777777776664  55556666666666777777777777666654  45555


Q ss_pred             HHH
Q 015811          334 TYN  336 (400)
Q Consensus       334 ~~~  336 (400)
                      +|.
T Consensus       345 t~~  347 (372)
T 3ly7_A          345 TLY  347 (372)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.35  E-value=0.0014  Score=42.75  Aligned_cols=68  Identities=12%  Similarity=-0.028  Sum_probs=41.1

Q ss_pred             CCCcchHHHHHHHHHccCC---hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811            8 PPPVSSFNILLGCLAKNKH---YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC   76 (400)
Q Consensus         8 p~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   76 (400)
                      |+|+..+..+..++...++   .++|..++++.++.. +.+..+...+...+.+.|++++|+..|+.+++..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4556666666666543333   566666666666654 3455666666666666666666666666666653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.28  E-value=0.0015  Score=43.23  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=26.2

Q ss_pred             HHHhcCCchhHHHHHHHHHhCCCCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 015811          236 ELCKNGKMDNASRLLDLMVQCDVRPNAF-TYNTLMDGFCLTGKINRVKELFVSMESM  291 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  291 (400)
                      .+...|++++|...++.+.+.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3444555555555555544432 22333 4444444555555555555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.23  E-value=0.0025  Score=41.58  Aligned_cols=66  Identities=12%  Similarity=0.066  Sum_probs=36.1

Q ss_pred             CcHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          260 PNAFTYNTLMDGFCLTGK---INRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       260 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      .++..+..+..++...++   .++|..++++..+.+ +.++.....+...+.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344455555555443333   456666666665554 345555555556666666666666666665554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.21  E-value=0.0033  Score=54.34  Aligned_cols=61  Identities=7%  Similarity=-0.079  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhc-----cC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRS-----CF-AP-NVVTFTSLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      +++.+..+|...|++++|..++++.++.     |. .| ...+++.|...|...|++++|+.++++..
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4444555555555555555555544431     10 11 12234445555555555555555544443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.21  E-value=0.0026  Score=41.96  Aligned_cols=58  Identities=10%  Similarity=0.137  Sum_probs=34.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      ....+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|.+.|++.++.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3445556666666666666665543 23445 5666666666666666666666666654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.21  E-value=0.0079  Score=42.88  Aligned_cols=88  Identities=15%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhcc-CCccHHHHHHHHHHHHhcCCHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG---QVSLGFVIFGRILRSC-FAPNVVTFTSLIKGLCAESRIVEAA  101 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~  101 (400)
                      ....+.+-|++....| .++..+...+..++++++   +.++++.+++.+.+.+ +......+-.+.-++.+.|++++|.
T Consensus        13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            4566777777777766 478888888999999988   6669999999999875 2124566667788889999999999


Q ss_pred             HHHHHHHHcCCCCCh
Q 015811          102 ALFTKLKAFGCEPNV  116 (400)
Q Consensus       102 ~~~~~~~~~~~~~~~  116 (400)
                      +.++.+.+.  .|+-
T Consensus        92 ~y~~~lL~i--eP~n  104 (152)
T 1pc2_A           92 KYVRGLLQT--EPQN  104 (152)
T ss_dssp             HHHHHHHHH--CTTC
T ss_pred             HHHHHHHhc--CCCC
Confidence            999999987  5543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.18  E-value=0.002  Score=55.69  Aligned_cols=89  Identities=13%  Similarity=0.052  Sum_probs=40.0

Q ss_pred             HHHccCChhHHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----cC-Cc-cHHHHH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSIG---LFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRS-----CF-AP-NVVTFT   85 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~g---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~   85 (400)
                      .+.++|++++|+.++++.++..   ..|+    ..+++.+..+|...|++++|..++++.+..     |. .| ...+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3444555555555555554321   1111    234455555555555555555555544431     10 11 123344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLK  108 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~  108 (400)
                      .|...|...|++++|+.++++..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            45555555555555555554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.09  E-value=0.0029  Score=54.75  Aligned_cols=98  Identities=14%  Similarity=-0.003  Sum_probs=72.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcc-cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-hHh
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEI-GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-----N-LNPN-VVT  194 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~  194 (400)
                      +..+...|++++|+.++++........ +...+....+++.+..+|...|++++|+.++++....     | ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667899999999999988654321 1112223467888999999999999999999987642     2 1222 356


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      ++.|...|...|++++|+.++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            78888889999999999998887764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.08  E-value=0.0084  Score=42.74  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHhhhhhCCCCc--CHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          295 HDDFSYNILINGYCKNK---EVEEALSLYNELPFKGIKP--TVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       295 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      ++..+...+..++++.+   +.++++.++++..+.+ .|  +...+-.+.-++.+.|++++|.++++.+++
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44444444455555544   3345555555544432 12  122333333344555555555555555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.08  E-value=0.0015  Score=56.45  Aligned_cols=93  Identities=5%  Similarity=-0.147  Sum_probs=64.8

Q ss_pred             hcCChHHHHHHHHHHHcCCCcc-cccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-hHhHHHHH
Q 015811          128 RTGHTIVALNLFKEMTNGNGEI-GVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE-----N-LNPN-VVTYTSLI  199 (400)
Q Consensus       128 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~  199 (400)
                      ..|++++|+.++++........ +...+....+++.+..+|...|++++|..++++....     | ..|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3577889999888876532211 1112223467888888999999999999988887642     2 1222 35678888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 015811          200 HGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       200 ~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            888888888888888887664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.02  E-value=0.011  Score=41.55  Aligned_cols=115  Identities=13%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             CCCCcchHHHHHHHHHccCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHH------HHHhcCChhhHHHHHHHHH
Q 015811            7 SPPPVSSFNILLGCLAKNKHY------DTVLSLFKRLNSIGLFPDLY-TYSILIN------CFCKMGQVSLGFVIFGRIL   73 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~g~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~   73 (400)
                      .|.|..+|-..+...-+.|+.      ++.+++|++.... ++|+.. .|...+.      .+...++.++|.++|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            467889999999999999999      8999999998764 455421 1222211      1234589999999999998


Q ss_pred             hccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           74 RSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        74 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +..-. =...|......-.++|+...|.+++.+.+..+.. +...+...+.
T Consensus        88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~  136 (161)
T 4h7y_A           88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR  136 (161)
T ss_dssp             HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred             HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence            75323 3777888888888999999999999999988744 3344444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.74  E-value=0.029  Score=37.39  Aligned_cols=62  Identities=15%  Similarity=0.020  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcc------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 015811           49 YSILINCFCKMGQVSLGFVIFGRILRSC------FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        49 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      +..+...+...|++..|..+|+...+..      ..+...++..+..++.+.|+++.|...+++..+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3344444444444444444444443321      0123344444555555555555555555555443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.076  Score=38.93  Aligned_cols=101  Identities=10%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811           55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV  134 (400)
Q Consensus        55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  134 (400)
                      ...+.|+++.|.++.+.+      .+...|..|.......|+++-|++.|.+...         +..+.-.|...|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            344566666666665543      2455666666666666666666666665432         2334444555566555


Q ss_pred             HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 015811          135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQ  182 (400)
Q Consensus       135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  182 (400)
                      ..++-+.....+            -++....++.-.|+++++.++|.+
T Consensus        79 L~kla~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           79 LSKMQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            554444444333            244445555556666666666643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.69  E-value=0.045  Score=51.90  Aligned_cols=45  Identities=13%  Similarity=0.129  Sum_probs=24.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEM  142 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  142 (400)
                      ...|+++.|.++.+.+      .+...|..+...+.+.++++.|.+.|.++
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456666655553321      24455566666666666666666665554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.64  E-value=0.017  Score=38.56  Aligned_cols=67  Identities=7%  Similarity=0.002  Sum_probs=56.6

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIG------LFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSC   76 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   76 (400)
                      ++.-+-.+...+.+.+++..|...|+...+.-      ..+....+..+..++.+.|+++.|...++++.+..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            44566788999999999999999999987631      13457789999999999999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.57  E-value=0.073  Score=50.46  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=69.2

Q ss_pred             HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811           55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV  134 (400)
Q Consensus        55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  134 (400)
                      .....|+++.|.++.+.      ..+...|..+...+.+.++++.|++.|.++..         |..+...+...|+.+.
T Consensus       661 ~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~  725 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG  725 (814)
T ss_dssp             HHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred             hhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence            34556677777666433      23678999999999999999999999998752         3455555666777777


Q ss_pred             HHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811          135 ALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM  183 (400)
Q Consensus       135 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  183 (400)
                      ..++.+.....+            -++....++.+.|++++|.+++.++
T Consensus       726 ~~~~~~~a~~~~------------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          726 LVTLAKDAETTG------------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC------------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            666665555443            2344455566667777777766554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.24  E-value=0.072  Score=42.55  Aligned_cols=84  Identities=11%  Similarity=0.004  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhc-cchHH
Q 015811          279 NRVKELFVSMESMGCKHD---DFSYNILINGYCK-----NKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFE-IRQAE  349 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~  349 (400)
                      ..|...+++..+.+  |+   ...|..+...|..     -|+.++|.+.|++.++....-+..++..+...++. .|+.+
T Consensus       180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            34444444444442  22   3345555555555     25555555555555544111123444444444444 25555


Q ss_pred             HHHHHHHHHhhCCCC
Q 015811          350 RALKLFVEMQGNDVA  364 (400)
Q Consensus       350 ~a~~~~~~~~~~~~~  364 (400)
                      ++.+.+++.+.....
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            555555555554443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.22  Score=36.47  Aligned_cols=131  Identities=15%  Similarity=0.109  Sum_probs=94.2

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR   96 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   96 (400)
                      -.....+.|+++.|.++.+.+      .+...|..+.......|+++-|.+.|.+...         +..+.-.|.-.|+
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence            345667899999999998776      3788999999999999999999999988643         3455566667888


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHH
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKA  176 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  176 (400)
                      .+...++-+.....|      -++.....+...|+++++.++|.+...               +..........|-.+.|
T Consensus        76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------------~~eA~~~A~t~g~~~~a  134 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------------LPLAYAVAKANGDEAAA  134 (177)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------------HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------------hHHHHHHHHHcCcHHHH
Confidence            877776666655544      356666677788999999999876432               11122222335666777


Q ss_pred             HHHHHHH
Q 015811          177 KELFLQM  183 (400)
Q Consensus       177 ~~~~~~~  183 (400)
                      .++.+.+
T Consensus       135 ~~~~~~~  141 (177)
T 3mkq_B          135 SAFLEQA  141 (177)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7776655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.22  E-value=0.069  Score=36.58  Aligned_cols=96  Identities=16%  Similarity=0.066  Sum_probs=67.4

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh---HHHHHHHHHhccCC-ccHHHHHHHHHHHH
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSL---GFVIFGRILRSCFA-PNVVTFTSLIKGLC   92 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~   92 (400)
                      ++..-........+.+-|++....| .++..+-..+..++.++.+...   ++.+++.+.+.+.+ ......-.|.-++.
T Consensus         7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y   85 (126)
T 1nzn_A            7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            3344444455666677777666655 4788887888888888876665   88888888876411 24455556777888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPN  115 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~  115 (400)
                      +.|++++|.+.++.+++.  .|+
T Consensus        86 klg~Y~~A~~~~~~lL~~--eP~  106 (126)
T 1nzn_A           86 RLKEYEKALKYVRGLLQT--EPQ  106 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CTT
T ss_pred             HhhhHHHHHHHHHHHHHh--CCC
Confidence            999999999999988887  454

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.21  E-value=0.87  Score=43.17  Aligned_cols=312  Identities=12%  Similarity=0.062  Sum_probs=162.2

Q ss_pred             HHhcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CChhhHHHHHHHH
Q 015811           56 FCKMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC--E-----PNVITYNTLINGL  126 (400)
Q Consensus        56 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~~  126 (400)
                      ....|+.++++.++...+..+  ..+....=..+.-+....|...++..++.......-  .     +....-..+.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            456778888877777665421  111222223333444555555567777776654320  0     1111122333333


Q ss_pred             HhcCC-hHHHHHHHHHHHcCCCcccccccCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH--HHH
Q 015811          127 CRTGH-TIVALNLFKEMTNGNGEIGVVFKPNT--VTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSL--IHG  201 (400)
Q Consensus       127 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~  201 (400)
                      +-.|. -+++.+.+..+....       .+..  ..-..+...+.-.|+.+....++..+.+..   +......+  .-+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd-------~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLG  533 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYND-------SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLA  533 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHH
Confidence            33343 245566666655432       1111  111233344556678777777777766532   23333333  334


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChH
Q 015811          202 FCHANDWNEAKGLLIEMVDQGVQPNVVSS--NVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKIN  279 (400)
Q Consensus       202 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  279 (400)
                      +...|+.+.+..+++.+.... .|....-  ..+.-+|+..|+.....++++.+.... ..+......+.-++...|+.+
T Consensus       534 ll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e  611 (963)
T 4ady_A          534 LINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT  611 (963)
T ss_dssp             HHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred             hhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence            446788888888888877642 2222211  223446778888877777888887643 233333444444555677777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHhhhhhCCCCcCHHHHHHHHHH--Hhccc-------hHH
Q 015811          280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEV-EEALSLYNELPFKGIKPTVVTYNTLFHG--LFEIR-------QAE  349 (400)
Q Consensus       280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~-------~~~  349 (400)
                      .+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+...   +|..+-...+.+  ..-.|       +..
T Consensus       612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva  687 (963)
T 4ady_A          612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVA  687 (963)
T ss_dssp             SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHH
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHH
Confidence            7777777666654 45554444444455545443 6778888888753   344433333322  22222       344


Q ss_pred             HHHHHHHHHhhC-CCCCChhhHHHHHHHhhcCCcc
Q 015811          350 RALKLFVEMQGN-DVAADTCTYRTFIDGLCVRPQV  383 (400)
Q Consensus       350 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~  383 (400)
                      ..++.+...... .-.++......+..+....|.-
T Consensus       688 ~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~  722 (963)
T 4ady_A          688 DINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR  722 (963)
T ss_dssp             HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence            444444444332 2234455555666666666543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.13  E-value=1.1e-06  Score=74.23  Aligned_cols=265  Identities=12%  Similarity=0.102  Sum_probs=146.0

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      .+..|+.|..+..+.+...+|++.|-+      ..|+..|..++.+..+.|.+++-...+....+..  -++.+=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence            345677777777777777777655422      1244556677777777777777777666555442  23344456777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      +|++.++..+-++++       -.|+..-...+..-|...|.++.|.-+|..+.+.               ..|..++.+
T Consensus       125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------------akLAstLV~  182 (624)
T 3lvg_A          125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------------GRLASTLVH  182 (624)
T ss_dssp             HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------------TTTSSSSSS
T ss_pred             HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------------HHHHHHHHH
Confidence            777777654433222       1355555566666666667666666555544332               223333445


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 015811          170 EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRL  249 (400)
Q Consensus       170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  249 (400)
                      .|++..|.+.-++      .-++.||..+-.+|...+.+.-|.-.--.++-.     ......++..|-..|.+++.+.+
T Consensus       183 L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsL  251 (624)
T 3lvg_A          183 LGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITM  251 (624)
T ss_dssp             CSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTT
T ss_pred             HHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHH
Confidence            5555554433222      125567777777777777766655444333322     22233455566677777777777


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH-hcCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 015811          250 LDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSME-SMGCKH------DDFSYNILINGYCKNKEVEEAL  317 (400)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~  317 (400)
                      ++...... +.....|+-|.-.|++- ++++..+.++..- +.+++.      ....|..++-.|.+-.+++.|.
T Consensus       252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            77666433 45566677666666654 3444333333221 111111      1234666666666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.05  E-value=0.091  Score=41.99  Aligned_cols=85  Identities=14%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             hhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhc-----CChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc-CCH
Q 015811           27 YDTVLSLFKRLNSIGLFPD---LYTYSILINCFCKM-----GQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE-SRI   97 (400)
Q Consensus        27 ~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~   97 (400)
                      ...|..++++..+..  |+   ...|..+...|.+.     |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            467888888888764  55   56889999999884     99999999999999986433477788888888885 999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 015811           98 VEAAALFTKLKAFGCE  113 (400)
Q Consensus        98 ~~a~~~~~~~~~~~~~  113 (400)
                      +.+.+.+++.......
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999987544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.96  E-value=0.098  Score=35.84  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHhhhhhCCCCc--CHHHHHHHHHHHhccchHHHHHH
Q 015811          279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEE---ALSLYNELPFKGIKP--TVVTYNTLFHGLFEIRQAERALK  353 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~  353 (400)
                      ..+.+-|......| .++..+--.+..++++..+...   ++.+++.+...+ .|  .....-.|.-++.+.|++++|.+
T Consensus        18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34444444444444 3555555556666666665444   666666665542 12  22233334446667777777777


Q ss_pred             HHHHHhh
Q 015811          354 LFVEMQG  360 (400)
Q Consensus       354 ~~~~~~~  360 (400)
                      .++.+++
T Consensus        96 ~~~~lL~  102 (126)
T 1nzn_A           96 YVRGLLQ  102 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.87  E-value=0.28  Score=34.61  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=25.2

Q ss_pred             CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811          241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  292 (400)
                      +++++|.++|+.+.+.+-.- ...|....+.-.++|+...|.+++......+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            45555555555554332111 3444444444455555555555555555544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.23  E-value=0.46  Score=32.84  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI  328 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  328 (400)
                      ..++..+......|.-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34455555566666666666666664332 255666666666666666666666666666666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.18  E-value=0.32  Score=45.04  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=80.5

Q ss_pred             HHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCC-hhhHHHHHHHHHhc------cCCc-c---
Q 015811           15 NILLGCLAKNKH-YDTVLSLFKRLNSIGLFPDLYTY--SILINCFCKMGQ-VSLGFVIFGRILRS------CFAP-N---   80 (400)
Q Consensus        15 ~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~---   80 (400)
                      ..++..+...++ ++.|+.+|+++.+..  |....+  ..++..+...++ --+|.+++.+.++.      ...+ +   
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            344555555666 588999999998764  433332  223333222222 22345544444321      0111 1   


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 015811           81 -------VVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMT  143 (400)
Q Consensus        81 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  143 (400)
                             ......-.+.+...|+++.|+.+-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                   1123333456778999999999999998873 5567899999999999999999999998874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.06  E-value=2.4  Score=40.27  Aligned_cols=265  Identities=11%  Similarity=0.023  Sum_probs=143.2

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhhHHHHHHHHHhccC-------CccHHHHHHHH--H
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLY--TYSILINCFCKMGQVSLGFVIFGRILRSCF-------APNVVTFTSLI--K   89 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~--~   89 (400)
                      ....|+.++++.++......+...+..  .-..+.-+....|..+++..++...+...-       .+....-..+.  .
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            456788888888877655421112222  223333345566666677887777665321       01112222222  2


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHH
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYN--TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGL  167 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (400)
                      ++.-.++ +++.+.+..+.... .+......  ++...+.-.|+.+....++..+.+..       ..+..-...+.-++
T Consensus       464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-------~e~vrR~aalgLGl  534 (963)
T 4ady_A          464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-------HGNITRGLAVGLAL  534 (963)
T ss_dssp             HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHH
T ss_pred             HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-------cHHHHHHHHHHHHh
Confidence            3333344 34555555555431 11111122  23334556778777778887766532       11222223333345


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChHhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811          168 CKEGFVDKAKELFLQMKYENLNPNVVTYT--SLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN  245 (400)
Q Consensus       168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  245 (400)
                      ...|+.+.+..+++.+.... .|....-.  .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.
T Consensus       535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~  612 (963)
T 4ady_A          535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT  612 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred             hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence            57789999998888887642 22222222  23445677888888888988887652 2233333333344556788888


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhcCCCCCHHHH
Q 015811          246 ASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKI-NRVKELFVSMESMGCKHDDFSY  300 (400)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~  300 (400)
                      +.++++.+.+.+ .|....-..+..+....|.. .++.+.+..+..   .++..+-
T Consensus       613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr  664 (963)
T 4ady_A          613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR  664 (963)
T ss_dssp             HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence            888887776654 45444444444455545544 577788888865   3454443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.83  E-value=0.62  Score=32.24  Aligned_cols=64  Identities=14%  Similarity=0.093  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 015811          118 TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENL  188 (400)
Q Consensus       118 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  188 (400)
                      .+...+..+...|.-++-.+++..+...       .+|++...-.+..+|.+.|+..++.+++.++.+.|+
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKN-------NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            3344444455555555555555553322       144455555555555555555555555555555443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.66  E-value=1.2e-06  Score=74.17  Aligned_cols=204  Identities=11%  Similarity=0.149  Sum_probs=120.0

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHH
Q 015811          156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMN  235 (400)
Q Consensus       156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  235 (400)
                      .+..|+.+..+....+...+|++.|-+.      -|+..|..++.+..+.|.+++-...+....+.  .-++..=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence            3456777777777777777766655322      25556777777777888888877777666554  224455567777


Q ss_pred             HHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--------------------CCC
Q 015811          236 ELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG--------------------CKH  295 (400)
Q Consensus       236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~  295 (400)
                      +|++.++..+..+++.       .|+..-...+..-|...|.++.|.-+|..+....                    -..
T Consensus       125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn  197 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN  197 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred             HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7888777665444332       3444455556666666666666655554432210                    023


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 015811          296 DDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFID  375 (400)
Q Consensus       296 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  375 (400)
                      ++.||-.+-.+|...+++.-|...--.++-+   |+  ....++..|-..|.+++.+.+++.-... -.....+|+.|.-
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI  271 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI  271 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence            5567777777777777766654433333211   11  1233555677777777777777766532 1234556666666


Q ss_pred             HhhcC
Q 015811          376 GLCVR  380 (400)
Q Consensus       376 ~~~~~  380 (400)
                      .|++-
T Consensus       272 LYsKY  276 (624)
T 3lvg_A          272 LYSKF  276 (624)
T ss_dssp             HHHSS
T ss_pred             HHHhc
Confidence            66553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.07  E-value=0.3  Score=41.54  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh-----CCCCcCHHHHH
Q 015811          265 YNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF-----KGIKPTVVTYN  336 (400)
Q Consensus       265 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~  336 (400)
                      ...++..+...|+++++...+..+.... +.+...|..++.++...|+..+|++.|++..+     .|+.|...+-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            3445556666777777777777766654 55666777777777777777777777776543     37777666533

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.04  E-value=1.8  Score=37.57  Aligned_cols=172  Identities=12%  Similarity=0.063  Sum_probs=98.4

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHH----HhcCChhhH--HHHHHHHHh--cc-CCc
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYSILINCF----CKMGQVSLG--FVIFGRILR--SC-FAP   79 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~----~~~~~~~~a--~~~~~~~~~--~~-~~~   79 (400)
                      +......++..|...|+++...+.+..+.+. |..+  ..-..+++.+    ......+..  ..+.+.+..  .| +-.
T Consensus        55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl  132 (445)
T 4b4t_P           55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV  132 (445)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence            3445566777777777777776666655432 3221  1222222222    222322211  111111100  00 000


Q ss_pred             ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccc
Q 015811           80 ---NVVTFTSLIKGLCAESRIVEAAALFTKLKAF--GCEPN---VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGV  151 (400)
Q Consensus        80 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  151 (400)
                         .......|...+...|++.+|.+++..+...  |....   ...+...++.|...+++..|..+++++........ 
T Consensus       133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-  211 (445)
T 4b4t_P          133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-  211 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-
Confidence               1233456788899999999999999998743  21111   34566778889999999999999988743210000 


Q ss_pred             cccCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015811          152 VFKPN--TVTYSIIIDGLCKEGFVDKAKELFLQMKY  185 (400)
Q Consensus       152 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  185 (400)
                       .+|+  ...+...+..+...+++.+|.+.|.++..
T Consensus       212 -~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          212 -KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence             1122  24556677778888999999888877754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.82  E-value=3.8  Score=37.24  Aligned_cols=309  Identities=10%  Similarity=-0.009  Sum_probs=159.2

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHHHHHHHhcCCHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSLIKGLCAESRIV   98 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~   98 (400)
                      ..+.|++..+..+...+...  +.. -..|..+...+ .....+   ++-..+.+..-.| ....-...+..+.+.+++.
T Consensus        16 a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~   89 (618)
T 1qsa_A           16 AWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWR   89 (618)
T ss_dssp             HHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHH
Confidence            34568888777776655321  211 11232222211 111233   3333333332122 2333455667777788887


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHH--H
Q 015811           99 EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDK--A  176 (400)
Q Consensus        99 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a  176 (400)
                      .....+..     .+.+...-.....+....|+..+|......+-..+       ...+..+..++..+.+.|....  .
T Consensus        90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-------~~~p~~c~~l~~~~~~~g~lt~~~~  157 (618)
T 1qsa_A           90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-------KSQPNACDKLFSVWRASGKQDPLAY  157 (618)
T ss_dssp             HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-------SCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-------CCCcHHHHHHHHHHHHCCCCCHHHH
Confidence            76664443     14455555556777888899888888888877665       4566778888888887665433  3


Q ss_pred             HHHHHHHHHcCCCCChHhHHHHHHHH-----------Hhc-CCHHHHHHHHHHHHHCCCCCCccc---HHHHHHHHHhcC
Q 015811          177 KELFLQMKYENLNPNVVTYTSLIHGF-----------CHA-NDWNEAKGLLIEMVDQGVQPNVVS---SNVIMNELCKNG  241 (400)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~-~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~  241 (400)
                      ..=++.+...|   +...-..++...           ... .+...+.....   .  ..++...   +...+.-+.+ .
T Consensus       158 ~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~  228 (618)
T 1qsa_A          158 LERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-Q  228 (618)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-c
Confidence            33333333332   111111111111           000 11111111111   1  1222211   1112222333 3


Q ss_pred             CchhHHHHHHHHHhCCCCCcHHHH----HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015811          242 KMDNASRLLDLMVQCDVRPNAFTY----NTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEAL  317 (400)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  317 (400)
                      +.+.|...+....+.. ..+....    ..++......+...++...+......  ..+.....-.+....+.|+++.|.
T Consensus       229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~  305 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN  305 (618)
T ss_dssp             CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence            7788888888776533 2233222    22333334445344555566554443  344444445555556779999999


Q ss_pred             HHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          318 SLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       318 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      ..|+.|...... .....--+..++...|+.++|..+|+.+..
T Consensus       306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999988764211 233233445577778999999998888753

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.70  E-value=3.2  Score=36.02  Aligned_cols=195  Identities=9%  Similarity=0.001  Sum_probs=108.5

Q ss_pred             cCChhHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH----hc
Q 015811           24 NKHYDTVLSLFKRLNSI-----GLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC----AE   94 (400)
Q Consensus        24 ~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~   94 (400)
                      .|+++.|++.+-.+.+.     +..........++..|...|+++...+.+..+.+..... ......+++.+.    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence            36788888877666532     234456778888999999999998888777666532221 122233333222    22


Q ss_pred             CCHHH--HHHHHHHHHH--cC-CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHH
Q 015811           95 SRIVE--AAALFTKLKA--FG-CEP---NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDG  166 (400)
Q Consensus        95 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (400)
                      ...+.  -..+.+.+..  .| +-.   .......|...+...|++.+|.+++..+...-.... ...--...+...++.
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~-~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM-EMSEKIQFILEQMEL  186 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHH
Confidence            22221  1112211110  01 000   112234567778888888888888888754220000 000112456666778


Q ss_pred             HHhcCChHHHHHHHHHHHH----cCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          167 LCKEGFVDKAKELFLQMKY----ENLNPNV--VTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       167 ~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      |...+++..|..++.++..    ....|+.  ..+...+..+...+++.+|...|.++..
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            8888888888888877642    1112221  3345556666677888887777766654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.66  E-value=0.43  Score=40.60  Aligned_cols=109  Identities=12%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             CcchHHHHHHHHH---ccCChhHHHHHHHHHHhC--CCC-CC------H------------HhHHHHHHHHHhcCChhhH
Q 015811           10 PVSSFNILLGCLA---KNKHYDTVLSLFKRLNSI--GLF-PD------L------------YTYSILINCFCKMGQVSLG   65 (400)
Q Consensus        10 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~--g~~-~~------~------------~~~~~l~~~~~~~~~~~~a   65 (400)
                      |...|..++....   ..|+.+.|.+.++++...  |-. ++      .            .+...++..+...|+++++
T Consensus       111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a  190 (388)
T 2ff4_A          111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV  190 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            4445555554432   357888999999888764  311 11      0            1223344556678888888


Q ss_pred             HHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhH
Q 015811           66 FVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA-----FGCEPNVITY  119 (400)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  119 (400)
                      ...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+     .|+.|+..+-
T Consensus       191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            88888877664 44777888888888888888888888887653     4777777653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.59  E-value=3.2  Score=41.08  Aligned_cols=150  Identities=15%  Similarity=0.081  Sum_probs=76.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCccccc-------------
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVV-------------  152 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------  152 (400)
                      .++..+...+..+.+.++....     +.+...--.+..++...|++++|.+.|.+....-......             
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            3444455555555554433222     3344444566778889999999999998764321100000             


Q ss_pred             ---ccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 015811          153 ---FKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNV----VTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP  225 (400)
Q Consensus       153 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  225 (400)
                         ...-..-|..++..+.+.+.++.+.++-...++...+.+.    ..|..+...+...|++++|...+-.+.....  
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--  969 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--  969 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence               0001123455555666666666666655555443211111    1355556666666666666666655544321  


Q ss_pred             CcccHHHHHHHHHhcCC
Q 015811          226 NVVSSNVIMNELCKNGK  242 (400)
Q Consensus       226 ~~~~~~~l~~~~~~~~~  242 (400)
                      -...+..++..++..|.
T Consensus       970 r~~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            23344444444444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.49  E-value=3.3  Score=41.04  Aligned_cols=145  Identities=15%  Similarity=0.097  Sum_probs=92.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----------------
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCF-----------------   77 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------   77 (400)
                      ..++..+.+.+.++-+.++....     +.+...-..+..++...|++++|.+.|++... ++                 
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence            34566666777777766654332     23444445667788889999999999976532 11                 


Q ss_pred             ------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 015811           78 ------APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV----ITYNTLINGLCRTGHTIVALNLFKEMTNGNG  147 (400)
Q Consensus        78 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  147 (400)
                            ..-...|..++..+-+.+.++.+.++-...++...+.+.    ..|..+.+.+...|++++|...+-.+.... 
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-  968 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-  968 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence                  011245677788888888888888777766654322221    246777888888888888888887776532 


Q ss_pred             cccccccCChhhHHHHHHHHHhcCCh
Q 015811          148 EIGVVFKPNTVTYSIIIDGLCKEGFV  173 (400)
Q Consensus       148 ~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (400)
                             .-......++...+..+..
T Consensus       969 -------~r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          969 -------LKKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             -------SCHHHHHHHHHHHHHHCCH
T ss_pred             -------HHHHHHHHHHHHHHhCCCh
Confidence                   2334555565555555543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.37  E-value=2.1  Score=39.80  Aligned_cols=127  Identities=13%  Similarity=0.003  Sum_probs=81.2

Q ss_pred             HHHHHHHHhcCC-hhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc------CCCCCh-----
Q 015811           50 SILINCFCKMGQ-VSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAF------GCEPNV-----  116 (400)
Q Consensus        50 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~-----  116 (400)
                      ..++..+...++ .+.|..+++++....+..+......++..+...+ +--+|.+++.+..+.      ..++..     
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            344444555666 5889999999988743222222233444433333 233455555554321      112111     


Q ss_pred             ------hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811          117 ------ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQM  183 (400)
Q Consensus       117 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  183 (400)
                            .....-...+...|+++-|+.+-++.....       |.+-.+|..|..+|...|+++.|+-.++-+
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                  122223445667899999999999998853       556789999999999999999999988876

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.55  E-value=1.8  Score=29.88  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          295 HDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       295 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      |+..+--.+..++++..+   ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344443334444444333   233444444444432111122333333445555555555555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.36  E-value=1.5  Score=28.48  Aligned_cols=48  Identities=8%  Similarity=0.057  Sum_probs=27.0

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811           27 YDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILR   74 (400)
Q Consensus        27 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   74 (400)
                      .=++.+-++.+...+..|++......+++|.+.+++..|..+++-+..
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334555555555555555555555556666555666666555555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.34  E-value=2.5  Score=29.13  Aligned_cols=74  Identities=18%  Similarity=0.068  Sum_probs=52.5

Q ss_pred             CCCCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 015811           41 GLFPDLYTYSILINCFCKMGQV---SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV  116 (400)
Q Consensus        41 g~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (400)
                      +..|+..+--.+..+++++.+.   .+++.+++.+.+.+.......+-.|.-++.+.|+++.|.+..+.+.+.  .|+-
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N  111 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  111 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence            3366777777777777777654   467788888887653334556666777888888888888888888876  4543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.82  E-value=1.9  Score=31.09  Aligned_cols=65  Identities=9%  Similarity=-0.049  Sum_probs=45.5

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCC-------HHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIG-LFPD-------LYTYSILINCFCKMGQVSLGFVIFGRILR   74 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   74 (400)
                      +..++-.-+..+...+.++.|+-+.+.+.... ..|+       ..++..+.+++...|++.+|...|++.++
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34455666778888899999988888765421 1233       23567777888889999999999988754

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=90.54  E-value=3.1  Score=28.70  Aligned_cols=65  Identities=11%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015811           61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGL  126 (400)
Q Consensus        61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (400)
                      |.-+..+-++.+...+..|++.+..+.+++|.+.+|+..|.++|+-++..- .+....|..+++-+
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl  132 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL  132 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence            344566677777777888899999999999999999999999998887652 34455677776653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.07  E-value=4.1  Score=29.41  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=18.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          301 NILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       301 ~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      -.+..+|.+.+++++|+.+++.+...
T Consensus       126 ykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          126 YKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            34667777777777777777776544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.82  E-value=2.8  Score=27.19  Aligned_cols=63  Identities=10%  Similarity=0.060  Sum_probs=49.9

Q ss_pred             ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      +.-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+-++..- ......|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            444667777788888889999999999999999999999999999988652 333455766654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.76  E-value=3.8  Score=28.65  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          295 HDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       295 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      |+..+--.+..++.+..+   ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344443344444444433   233444555444432111222222333355555555555555555554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.71  E-value=7.7  Score=33.46  Aligned_cols=120  Identities=7%  Similarity=-0.059  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHhCC-CCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcc--CCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811           27 YDTVLSLFKRLNSIG-LFP-DLYTYSILINCFCKMGQVSLGFVIFGRILRSC--FAPNVVTFTSLIKGLCAESRIVEAAA  102 (400)
Q Consensus        27 ~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~  102 (400)
                      .++-.+......+.. ... -..++..+...+.+.|+++.|.+.|.++....  ..--...+-..++.+...+++..+..
T Consensus       110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~  189 (429)
T 4b4t_R          110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE  189 (429)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            444444445444422 122 23467778888888899999998888887642  23345667778888888889988888


Q ss_pred             HHHHHHHcC-CCCChhhHHH----HHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          103 LFTKLKAFG-CEPNVITYNT----LINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       103 ~~~~~~~~~-~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      .+.+....- -.++....+.    -...+...+++..|-+.|-+.....
T Consensus       190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            888875431 0122222111    1122345678888887776654433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.17  E-value=9.4  Score=31.08  Aligned_cols=18  Identities=11%  Similarity=-0.191  Sum_probs=12.5

Q ss_pred             HhccchHHHHHHHHHHHh
Q 015811          342 LFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       342 ~~~~~~~~~a~~~~~~~~  359 (400)
                      |.-.++...|..++....
T Consensus       198 yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          198 YLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHTTBHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHH
Confidence            445577888888877654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.06  E-value=5.2  Score=27.99  Aligned_cols=72  Identities=17%  Similarity=0.050  Sum_probs=54.7

Q ss_pred             CCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 015811           43 FPDLYTYSILINCFCKMGQV---SLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV  116 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (400)
                      .|+..+--.+..++.++.+.   .+++.+++.+.+.+........-.|.-++.+.|++++|.++.+.+++.  .|+-
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence            57777777778888887754   467888888888654445556666778888999999999999999887  5544

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.17  E-value=5.7  Score=27.43  Aligned_cols=51  Identities=10%  Similarity=0.108  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           96 RIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        96 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      |.-+..+-++.+....+.|++....+.+++|-+.+++..|.++|+-++.+.
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~  118 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA  118 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            334455566666666667777777777777777777777777777766554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.86  E-value=12  Score=32.24  Aligned_cols=83  Identities=5%  Similarity=-0.127  Sum_probs=58.9

Q ss_pred             hhhHHHHHHHHHhccC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHH
Q 015811           62 VSLGFVIFGRILRSCF-AP-NVVTFTSLIKGLCAESRIVEAAALFTKLKAFG--CEPNVITYNTLINGLCRTGHTIVALN  137 (400)
Q Consensus        62 ~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~  137 (400)
                      .++-.+......+... .. -..+...+...|.+.|+++.|.+.|.++...-  ...-...+-.+++.+...+++..+..
T Consensus       110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~  189 (429)
T 4b4t_R          110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE  189 (429)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4444444444444222 11 23466778899999999999999999998753  23345667788899999999999999


Q ss_pred             HHHHHHc
Q 015811          138 LFKEMTN  144 (400)
Q Consensus       138 ~~~~~~~  144 (400)
                      .+.++..
T Consensus       190 ~~~ka~~  196 (429)
T 4b4t_R          190 KLEAVNS  196 (429)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.69  E-value=6.5  Score=31.03  Aligned_cols=56  Identities=13%  Similarity=0.054  Sum_probs=42.8

Q ss_pred             HHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 015811           19 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS   75 (400)
Q Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   75 (400)
                      ..+.+.|++++|++....-++.. +.|...-..+++.+|-.|++++|.+-++...+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            45667788888888887777765 557777777888888888888888877777765

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.85  E-value=13  Score=30.28  Aligned_cols=173  Identities=10%  Similarity=0.075  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCChhhHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA----LFTKLKAFGCEPNVITYNTLI  123 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~  123 (400)
                      .|.++..=|.+.+++++|.+++..-.               ..+.+.|+...|-+    +++.+.+.+++++......++
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            44555555666667776666654322               22334455544443    345555667777777777777


Q ss_pred             HHHHhcCChH-HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811          124 NGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF  202 (400)
Q Consensus       124 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (400)
                      ..+......+ .=.++++++.......+....-++.....+...|.+.+++.+|...|-.    +-.-+...+..++.-+
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w  175 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW  175 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence            6665532111 1123333332211000000133667778888888888888888776642    1111344455544444


Q ss_pred             Hhc---CCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          203 CHA---NDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       203 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ...   |...++-              ...-. .+-.|...++...|..+++...
T Consensus       176 ~~~~~~~~~~e~d--------------lf~~R-aVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          176 LCQVDDIEDSTVA--------------EFFSR-LVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHTTCCCHHHHH--------------HHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHhcCCCCcchHH--------------HHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence            433   3333221              11111 2224556778888888777654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.58  E-value=5.5  Score=25.77  Aligned_cols=78  Identities=9%  Similarity=0.030  Sum_probs=42.3

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT  105 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  105 (400)
                      ..++|..+-+-+...+.  ...+-..-+..+...|++++|..+.+..-    .||...|.+|...  +.|..+++...+.
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~   93 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN   93 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence            45666666666665432  11111222234556677777766654432    4566666655443  5566666666665


Q ss_pred             HHHHcC
Q 015811          106 KLKAFG  111 (400)
Q Consensus       106 ~~~~~~  111 (400)
                      ++...|
T Consensus        94 ~la~sg   99 (116)
T 2p58_C           94 RLARSQ   99 (116)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            665554

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.69  E-value=5.2  Score=25.84  Aligned_cols=78  Identities=13%  Similarity=0.063  Sum_probs=43.3

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFT  105 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  105 (400)
                      ..++|..+-+-+...+.  ...+-..-+..+...|++++|..+.+..-    .||...|.+|...  +.|..+++...+.
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~   92 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA   92 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence            45667666666665442  11111222334556777777766554332    4666666655443  6666666666666


Q ss_pred             HHHHcC
Q 015811          106 KLKAFG  111 (400)
Q Consensus       106 ~~~~~~  111 (400)
                      ++...|
T Consensus        93 ~la~sg   98 (115)
T 2uwj_G           93 GLGGSS   98 (115)
T ss_dssp             HHHTCS
T ss_pred             HHHhCC
Confidence            666555

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.89  E-value=18  Score=29.68  Aligned_cols=173  Identities=10%  Similarity=0.081  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCChhhHHHHH
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA----LFTKLKAFGCEPNVITYNTLI  123 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~  123 (400)
                      +|.++..=|.+.+++++|.+++-.-.               ..+.+.|+...+-+    +++-+.+.++++|......++
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~  101 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL  101 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34445555677788888777654322               12233444443333    335555666777776666666


Q ss_pred             HHHHhcCChH-HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015811          124 NGLCRTGHTI-VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGF  202 (400)
Q Consensus       124 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (400)
                      ..+......+ .=.++++++.......+....-++.....+...|.+.+++.+|...|-    .|..++...|..++.-+
T Consensus       102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew  177 (336)
T 3lpz_A          102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW  177 (336)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence            6665544311 112222222211100000023456677778888888888888877662    23333335665555444


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHH
Q 015811          203 CHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ...+...++              +...-.. +-.|...++...|..+++...
T Consensus       178 ~~~~~~~e~--------------dlfiaRa-VL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          178 YKQDESHTA--------------PLYCARA-VLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHTSCGGGH--------------HHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCCccH--------------HHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence            443322111              1122222 234566777777777665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	400
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.72
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.4
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.37
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.9
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.86
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.85
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.62
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.55
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.46
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.34
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.32
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.15
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.02
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.55
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.41
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.33
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.7
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.76
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.74
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.59
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.0
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.29
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.2
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-23  Score=177.88  Aligned_cols=349  Identities=12%  Similarity=0.035  Sum_probs=239.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCC
Q 015811           17 LLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESR   96 (400)
Q Consensus        17 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   96 (400)
                      +...+.+.|++++|++.|+++.+.. +-+..++..+..++.+.|++++|...++++++..+ .+..++..+..++...|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence            5567888999999999999998765 45788999999999999999999999999998753 367889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------------------------CChHHHHHHHHHH
Q 015811           97 IVEAAALFTKLKAFGCEPNVITYNTLINGLCRT----------------------------------GHTIVALNLFKEM  142 (400)
Q Consensus        97 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------~~~~~a~~~~~~~  142 (400)
                      +++|...+....+.. +.+..............                                  +....+...+...
T Consensus        83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            999999999988764 22333333333333332                                  3333333333333


Q ss_pred             HcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015811          143 TNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQG  222 (400)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  222 (400)
                      ....       +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++......
T Consensus       162 ~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  233 (388)
T d1w3ba_         162 IETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS  233 (388)
T ss_dssp             HHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred             hccC-------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh
Confidence            3322       3344556666666777777777777777766543 2245566667777777777777777777766653


Q ss_pred             CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 015811          223 VQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNI  302 (400)
Q Consensus       223 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  302 (400)
                       +.+...+..+..++.+.|++++|...++++.+.. +-+..++..+...+...|++++|...++...... +.+...+..
T Consensus       234 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  310 (388)
T d1w3ba_         234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN  310 (388)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhH
Confidence             3345556666677777777777777777776654 3445666677777777777777777777776654 556666777


Q ss_pred             HHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHhhcCC
Q 015811          303 LINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAA-DTCTYRTFIDGLCVRP  381 (400)
Q Consensus       303 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  381 (400)
                      +..++...|++++|+..+++..+.. +-+..++..+..++...|++++|...|++..+.  .| +...+..+..+|.+.|
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            7777777777777777777766542 124556666677777777777777777776653  34 3445666666666555


Q ss_pred             c
Q 015811          382 Q  382 (400)
Q Consensus       382 ~  382 (400)
                      |
T Consensus       388 D  388 (388)
T d1w3ba_         388 D  388 (388)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-21  Score=167.37  Aligned_cols=325  Identities=16%  Similarity=0.073  Sum_probs=267.3

Q ss_pred             CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHH---
Q 015811            7 SPPPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVT---   83 (400)
Q Consensus         7 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---   83 (400)
                      .|.++.++..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.+....+.... +...   
T Consensus        29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~  106 (388)
T d1w3ba_          29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYIN  106 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccccc-ccccccc
Confidence            35678899999999999999999999999998875 457889999999999999999999999998875422 2211   


Q ss_pred             -------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 015811           84 -------------------------------FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT  132 (400)
Q Consensus        84 -------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  132 (400)
                                                     ...........+....+...+....... +.+...+..+...+...|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  185 (388)
T d1w3ba_         107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEI  185 (388)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcH
Confidence                                           1222233334445556666666665543 34566778888899999999


Q ss_pred             HHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 015811          133 IVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAK  212 (400)
Q Consensus       133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  212 (400)
                      ++|...+++.....       +.+...+..+..++...|++++|...+......+ +.+...+..+...+.+.|++++|.
T Consensus       186 ~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  257 (388)
T d1w3ba_         186 WLAIHHFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAI  257 (388)
T ss_dssp             HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhC-------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999988764       4567788999999999999999999999988764 346677888899999999999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC
Q 015811          213 GLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMG  292 (400)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  292 (400)
                      ..+++..+.. +.+..++..+..++...|++++|...++...... +.+...+..+...+...|++++|...+++..+..
T Consensus       258 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         258 DTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998874 3456788889999999999999999999988765 6678888999999999999999999999998875


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-CHHHHHHHHHHHhccch
Q 015811          293 CKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP-TVVTYNTLFHGLFEIRQ  347 (400)
Q Consensus       293 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~  347 (400)
                       +.+..++..+..+|...|++++|...|++..+.  .| +...|..+..+|.+.||
T Consensus       336 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         336 -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence             456888999999999999999999999999876  44 46778888888877664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4e-15  Score=123.33  Aligned_cols=234  Identities=12%  Similarity=-0.001  Sum_probs=137.5

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      +....-.....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+++.|...|++.++..+ -+...+..+..
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~   95 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV   95 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccc
Confidence            34444456778889999999999999999875 45788999999999999999999999999998753 36788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----------------HHHHHHHhcCChHHHHHHHHHHHcCCCcccccc
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYN----------------TLINGLCRTGHTIVALNLFKEMTNGNGEIGVVF  153 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  153 (400)
                      ++...|++++|.+.++......  |+.....                ..+..+...+...+|...+.+.....+     .
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-----~  168 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-----T  168 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-----T
T ss_pred             cccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-----c
Confidence            9999999999999999988753  3221110                011111222333444444444333221     1


Q ss_pred             cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 015811          154 KPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVI  233 (400)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  233 (400)
                      ..+...+..+...+...|++++|+..+++..... +-+...|..+..++...|++++|...+++..+.. +-+..++..+
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l  246 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNL  246 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHH
Confidence            1223334444444444445555544444444332 1123344444444444444444444444444432 1123334444


Q ss_pred             HHHHHhcCCchhHHHHHHHHH
Q 015811          234 MNELCKNGKMDNASRLLDLMV  254 (400)
Q Consensus       234 ~~~~~~~~~~~~a~~~~~~~~  254 (400)
                      ..+|.+.|++++|...|++.+
T Consensus       247 g~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            444444444444444444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-14  Score=120.75  Aligned_cols=243  Identities=14%  Similarity=0.097  Sum_probs=131.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHH
Q 015811           86 SLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIID  165 (400)
Q Consensus        86 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (400)
                      .....+.+.|++++|...|+++++.. |-+..+|..+..++...|++++|+..+++..+..       +-+...+..+..
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~   95 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTALMALAV   95 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------cccccccccccc
Confidence            35556777888888888888877764 4456677777788888888888888888777654       345667777777


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchh
Q 015811          166 GLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDN  245 (400)
Q Consensus       166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  245 (400)
                      ++...|++++|.+.++......  |+.............                   ..+.......+..+...+.+.+
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~  154 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLE  154 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHH
T ss_pred             cccccccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHH
Confidence            7888888888888887776642  221110000000000                   0000000001111222333444


Q ss_pred             HHHHHHHHHhCCC-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhh
Q 015811          246 ASRLLDLMVQCDV-RPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELP  324 (400)
Q Consensus       246 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  324 (400)
                      +...+....+... ..+...+..+...+...|++++|...+++..... +.+...|..+..+|...|++++|...+++..
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHH
Confidence            4455444433221 1234445555555555555555555555555443 3345555555555555566666665555555


Q ss_pred             hCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015811          325 FKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQ  359 (400)
Q Consensus       325 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  359 (400)
                      +... -+..+|..+..+|.+.|++++|++.|++.+
T Consensus       234 ~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  267 (323)
T d1fcha_         234 ELQP-GYIRSRYNLGISCINLGAHREAVEHFLEAL  267 (323)
T ss_dssp             HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4321 134445555555555566666655555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.5e-11  Score=99.15  Aligned_cols=199  Identities=7%  Similarity=-0.000  Sum_probs=149.7

Q ss_pred             cchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           11 VSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMG-QVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        11 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ..+|+.+...+.+.+.+++|+++++++.+.. +-+..+|+....++...| ++++|+..++..++..+. +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            4567777778888888899999999988875 457778888888888776 478899998888887533 7788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      ++.+.|++++|+..++++.+.. +.+..+|..+...+...|++++|+..++++.+.+       +.+...|+.+..++.+
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-------p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------CccHHHHHHHHHHHHH
Confidence            8888899999999998888875 5567888888888888899999999998888765       4566777777666666


Q ss_pred             cCC------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          170 EGF------VDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       170 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      .+.      +++|++.+..+.+.. +.+...|..+...+.. ...+++...++...+.
T Consensus       193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL  248 (315)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred             ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence            554      567777777777653 2355666666555443 3356667777766654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=5.3e-12  Score=104.62  Aligned_cols=85  Identities=9%  Similarity=0.014  Sum_probs=37.6

Q ss_pred             cCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015811          240 NGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSL  319 (400)
Q Consensus       240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  319 (400)
                      .+..+++...+....... +++...+..++..+...++.++|...+.+..+.. +.+...+..+..++...|++++|...
T Consensus       221 l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~  298 (334)
T d1dcea1         221 TDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQY  298 (334)
T ss_dssp             HCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            344444444444444332 2223333333344444444555555554444432 22334444445555555555555555


Q ss_pred             HhhhhhC
Q 015811          320 YNELPFK  326 (400)
Q Consensus       320 ~~~~~~~  326 (400)
                      ++++.+.
T Consensus       299 ~~~ai~l  305 (334)
T d1dcea1         299 FSTLKAV  305 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=6.6e-11  Score=98.79  Aligned_cols=277  Identities=10%  Similarity=-0.045  Sum_probs=184.6

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-----ccHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-----PNVV   82 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~   82 (400)
                      .........+...|++++|++++++........+    ..++..+..++...|++++|...|++..+....     ....
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3444556777889999999999999887532111    346777888999999999999999988763211     1234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811           83 TFTSLIKGLCAESRIVEAAALFTKLKAF----GCEPN---VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                      .+..+...+...|++..+...+......    +....   ...+..+...+...|+++.+...+...........  ...
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~  170 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQ  170 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--GGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh--hhh
Confidence            5566778888999999999988876542    11211   12455567788889999999999988776542211  122


Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---
Q 015811          156 NTVTYSIIIDGLCKEGFVDKAKELFLQMKYEN--LNPN----VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPN---  226 (400)
Q Consensus       156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---  226 (400)
                      ....+......+...+++..+...+.......  ....    ...+..+...+...|+++.|...+..........+   
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence            33455666677788899998888887765431  1111    12345556667778888888888877655432222   


Q ss_pred             cccHHHHHHHHHhcCCchhHHHHHHHHHh----CCCCCc-HHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 015811          227 VVSSNVIMNELCKNGKMDNASRLLDLMVQ----CDVRPN-AFTYNTLMDGFCLTGKINRVKELFVSMES  290 (400)
Q Consensus       227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  290 (400)
                      ...+..+..++...|++++|...++.+..    .+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22344466778888888888888877653    222222 34566677777788888888888777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.8e-10  Score=92.79  Aligned_cols=215  Identities=11%  Similarity=0.048  Sum_probs=157.6

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015811           46 LYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAES-RIVEAAALFTKLKAFGCEPNVITYNTLIN  124 (400)
Q Consensus        46 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  124 (400)
                      ...++.+...+.+.+.+++|+++++++++.++. +..+|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            456777777888889999999999999987633 7778888888887766 5899999999988875 557788888889


Q ss_pred             HHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015811          125 GLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH  204 (400)
Q Consensus       125 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (400)
                      .+.+.|++++|+..++++.+..       +.+...|..+..++...|++++|++.++++++.+. .+...|+.+...+.+
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHH
Confidence            9999999999999999998865       56788899999999999999999999999988743 356677766666555


Q ss_pred             cCC------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCC-CcHHHHHHHHHHH
Q 015811          205 AND------WNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVR-PNAFTYNTLMDGF  272 (400)
Q Consensus       205 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  272 (400)
                      .+.      +++|+..+...++.. +.+...+..+...+. ....+++...++...+.... .+...+..++..|
T Consensus       193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            443      567777777777664 335555555554443 34456677777666554322 2334444444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.8e-10  Score=96.13  Aligned_cols=298  Identities=11%  Similarity=-0.003  Sum_probs=154.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHH
Q 015811           88 IKGLCAESRIVEAAALFTKLKAFGCEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSI  162 (400)
Q Consensus        88 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (400)
                      ...+...|++++|.+++++..+.. +.+     ..++..+..++...|++++|+..+++........+. .......+..
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~   96 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHH
Confidence            444555666666666666655542 111     123444555566666666666666655432210000 0111233444


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc----CCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CcccHH
Q 015811          163 IIDGLCKEGFVDKAKELFLQMKYE----NLNPN---VVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQP----NVVSSN  231 (400)
Q Consensus       163 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~  231 (400)
                      +...+...|++..+...+......    +....   ...+..+...+...|+++.+...+..........    ....+.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            555566666776666666655431    11111   1234445556666677777777776665532111    122333


Q ss_pred             HHHHHHHhcCCchhHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC---CHHHHHH
Q 015811          232 VIMNELCKNGKMDNASRLLDLMVQC----DVRP--NAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKH---DDFSYNI  302 (400)
Q Consensus       232 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~  302 (400)
                      .....+...++...+...+......    +..+  ....+..+...+...|+++.|...++.........   ....+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            4445556666666666666544321    1011  12234445556667777777777777665432211   2334455


Q ss_pred             HHHHHHhcCCHHHHHHHHhhhhh----CCCCcC-HHHHHHHHHHHhccchHHHHHHHHHHHhhC----CCCC----Chhh
Q 015811          303 LINGYCKNKEVEEALSLYNELPF----KGIKPT-VVTYNTLFHGLFEIRQAERALKLFVEMQGN----DVAA----DTCT  369 (400)
Q Consensus       303 l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~----~~~~  369 (400)
                      +..++...|++++|...++++..    .+..|+ ...+..+...+...|++++|.+.+++..+.    |...    ....
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~  336 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA  336 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence            66777777777777777776643    233333 234555666777777777777777765431    2110    1223


Q ss_pred             HHHHHHHhhcCCcchhhH
Q 015811          370 YRTFIDGLCVRPQVRFTY  387 (400)
Q Consensus       370 ~~~l~~~~~~~g~~~~a~  387 (400)
                      +..++..+...++.+++.
T Consensus       337 ~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         337 MAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHhcCCChHHH
Confidence            445556666666666654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=2.5e-10  Score=93.07  Aligned_cols=218  Identities=9%  Similarity=-0.003  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh--------------cCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 015811          134 VALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK--------------EGFVDKAKELFLQMKYENLNPNVVTYTSLI  199 (400)
Q Consensus       134 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  199 (400)
                      .+..+|+++...       .+.+...|...+..+..              .+..++|..+|+...+...+.+...|...+
T Consensus        34 Rv~~vyerAl~~-------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya  106 (308)
T d2onda1          34 RVMFAYEQCLLV-------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA  106 (308)
T ss_dssp             HHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345566666554       24455666655554432              234578889999988654455667788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHH-HHcCCCh
Q 015811          200 HGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDG-FCLTGKI  278 (400)
Q Consensus       200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  278 (400)
                      ....+.|+++.|..+++.+++.........|...+..+.+.|+++.|.++|+.+.+.. +.+...|...+.. +...|+.
T Consensus       107 ~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~  185 (308)
T d2onda1         107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCH
Confidence            8889999999999999999876433233467888899999999999999999998876 3444455444433 4456899


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCC-CCcC--HHHHHHHHHHHhccchHHHHHHHH
Q 015811          279 NRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKG-IKPT--VVTYNTLFHGLFEIRQAERALKLF  355 (400)
Q Consensus       279 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~  355 (400)
                      +.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++..... ..|+  ...|...+..-...|+.+.+.+++
T Consensus       186 ~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~  264 (308)
T d2onda1         186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999998864 6678899999999999999999999999988753 3333  457888888778889999999999


Q ss_pred             HHHhh
Q 015811          356 VEMQG  360 (400)
Q Consensus       356 ~~~~~  360 (400)
                      +++.+
T Consensus       265 ~r~~~  269 (308)
T d2onda1         265 KRRFT  269 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=4.7e-10  Score=91.39  Aligned_cols=187  Identities=11%  Similarity=0.051  Sum_probs=101.9

Q ss_pred             ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 015811           61 QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFK  140 (400)
Q Consensus        61 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  140 (400)
                      ..+.|..+|++.++...+.+...|...+......|+++.|..+|+++.+........+|...+....+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            34556666666655433334455555566666666666666666666554211122345666666666666666666666


Q ss_pred             HHHcCCCcccccccCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015811          141 EMTNGNGEIGVVFKPNTVTYSIIIDG-LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMV  219 (400)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  219 (400)
                      ++....       +.+...|...... +...|+.+.|..+|+.+.... +.+...|...+..+.+.|+.+.|..+|++..
T Consensus       159 ~al~~~-------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai  230 (308)
T d2onda1         159 KAREDA-------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHTST-------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHhC-------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            665543       2333333333322 223456666666666666542 2345566666666666666666666666665


Q ss_pred             HCC-CCCC--cccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 015811          220 DQG-VQPN--VVSSNVIMNELCKNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       220 ~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  255 (400)
                      ... ..|+  ...|...+..-...|+.+.+.++++++.+
T Consensus       231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            542 1222  12455555555556666666666665544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.4e-11  Score=99.67  Aligned_cols=213  Identities=11%  Similarity=-0.019  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHhHH-HHHHHHHhcCCH
Q 015811          132 TIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEG--FVDKAKELFLQMKYENLNPNVVTYT-SLIHGFCHANDW  208 (400)
Q Consensus       132 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~  208 (400)
                      +++|+.+++.+....       +.+...|..+..++...+  ++++|...+..+.+.. +++...+. .....+...+.+
T Consensus        89 ~~~al~~~~~~l~~~-------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          89 VKAELGFLESCLRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHhC-------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence            444455555444432       233334444443333332  2445555555544432 11223222 222333344555


Q ss_pred             HHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 015811          209 NEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSM  288 (400)
Q Consensus       209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  288 (400)
                      +.|+..++.+.+.. +-+...+..+..++.+.|++++|...+....+.  .|..   ......+...+..+.+...+...
T Consensus       161 ~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~  234 (334)
T d1dcea1         161 AEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRW  234 (334)
T ss_dssp             HHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHH
Confidence            55555555544443 223444455555555555555544333322221  0110   11112223334445555555555


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          289 ESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .... +++...+..++..+...+++++|...+.+...... -+...+..+...+...|++++|++.+++..+
T Consensus       235 l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         235 LLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5443 33444455555555666666666666666554421 1334455555566666666666666666665

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3e-10  Score=90.14  Aligned_cols=118  Identities=11%  Similarity=-0.022  Sum_probs=72.0

Q ss_pred             ChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHH
Q 015811           26 HYDTVLSLFKRLNSIGLFP---DLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAA  102 (400)
Q Consensus        26 ~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  102 (400)
                      +.+.++.-++++.......   ...+|..+..+|.+.|++++|.+.|++.++..+ -+..+|..+..++...|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence            3445555555555432111   123555666666777777777777777766542 256666667777777777777777


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811          103 LFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      .|++..+.. +.+..++..+..++...|++++|+..++...+.
T Consensus        93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            777766653 334556666666666677777777777666654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=7.5e-11  Score=93.75  Aligned_cols=198  Identities=10%  Similarity=-0.093  Sum_probs=134.4

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIK   89 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   89 (400)
                      ...+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|++.|+++++..+ .+..++..+..
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~  113 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHH
Confidence            44678888999999999999999999999875 55789999999999999999999999999999753 36778888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHh
Q 015811           90 GLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCK  169 (400)
Q Consensus        90 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  169 (400)
                      ++...|++++|...|+...+.. +.+......+...+.+.+..+.+..+........        +....+. ++..+..
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~  183 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--------KEQWGWN-IVEFYLG  183 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--------CCSTHHH-HHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--------hhhhhhh-HHHHHHH
Confidence            9999999999999999999874 3344444444445555565555555555554432        2222222 2222222


Q ss_pred             cCCh----HHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015811          170 EGFV----DKAKELFLQMKYENLNP-NVVTYTSLIHGFCHANDWNEAKGLLIEMVDQ  221 (400)
Q Consensus       170 ~~~~----~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  221 (400)
                      ....    +.+...+......  .| ...++..+...+...|++++|...|+..+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         184 NISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             SSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            1111    1111111111111  11 1234556677777778888888888877764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.1e-07  Score=70.89  Aligned_cols=127  Identities=10%  Similarity=-0.071  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      .|+. ...+...|++++|++.|+++.    +|+..+|..+..++...|++++|++.|++.++.++ .+...|..+..++.
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence            4554 566788999999999998652    67888999999999999999999999999999863 37889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           93 AESRIVEAAALFTKLKAFGCEPN----------------VITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +.|++++|...|++..... +.+                ..++..+..++...|++++|.+.+.......
T Consensus        82 ~~g~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhccHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999999999999987642 111                2345667888999999999999999988754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.6e-07  Score=70.02  Aligned_cols=85  Identities=13%  Similarity=-0.017  Sum_probs=44.9

Q ss_pred             HHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 015811           55 CFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIV  134 (400)
Q Consensus        55 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  134 (400)
                      .+...|+++.|++.|.++    .+|+..+|..+..++...|++++|++.|++.++.. +.+...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            344555555555555442    13344455555555555555555555555555543 3344455555555555555555


Q ss_pred             HHHHHHHHHc
Q 015811          135 ALNLFKEMTN  144 (400)
Q Consensus       135 a~~~~~~~~~  144 (400)
                      |+..|++...
T Consensus        89 A~~~~~kAl~   98 (192)
T d1hh8a_          89 AIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=4e-07  Score=72.91  Aligned_cols=201  Identities=9%  Similarity=-0.066  Sum_probs=102.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHHH
Q 015811          123 INGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYE----NL-NPNVVTYTS  197 (400)
Q Consensus       123 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~  197 (400)
                      ...|...+++++|.+.|.+..+.....+. .+.-..+|..+..+|.+.|++++|.+.++...+.    +. .....++..
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~-~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            45677788888888888777553210000 1112356777778888888888888887766542    10 001233444


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCc------HHHH
Q 015811          198 LIHGFCH-ANDWNEAKGLLIEMVDQ----GVQP-NVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPN------AFTY  265 (400)
Q Consensus       198 l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~  265 (400)
                      +...|.. .|++++|...+++..+.    +.++ ...++..+...+...|++++|...++.+........      ...+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            4555533 47777777777665432    1111 122345556666666666666666666554321111      0112


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHhhhh
Q 015811          266 NTLMDGFCLTGKINRVKELFVSMESMGCK-HD---DFSYNILINGYCK--NKEVEEALSLYNELP  324 (400)
Q Consensus       266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~A~~~~~~~~  324 (400)
                      ...+..+...++++.|...+++..+.... ++   ......++.++..  .+.+++|+..|+.+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            23333445556666666666665543211 11   1223344444433  223555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.84  E-value=9.6e-06  Score=63.67  Aligned_cols=224  Identities=9%  Similarity=-0.055  Sum_probs=129.8

Q ss_pred             CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhccCCccHHHHH
Q 015811           10 PVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCK----MGQVSLGFVIFGRILRSCFAPNVVTFT   85 (400)
Q Consensus        10 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~   85 (400)
                      |+.++..|...+.+.+++++|++.|++..+.|   +..++..|...|..    ..+...|...++.....+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            34567777778888889999999999888765   56666667777765    557788888888877764   233333


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHcCCCcccccccCCh
Q 015811           86 SLIKGLCA----ESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTIVALNLFKEMTNGNGEIGVVFKPNT  157 (400)
Q Consensus        86 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  157 (400)
                      .+...+..    ..+.+.|...++...+.|.   ......+...+..    ......+...+......         .+.
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---------~~~  142 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---------NDG  142 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---------TCH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---------ccc
Confidence            34333332    4567788888888776652   2222223223322    33455566666655442         345


Q ss_pred             hhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccc
Q 015811          158 VTYSIIIDGLCK----EGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCH----ANDWNEAKGLLIEMVDQGVQPNVVS  229 (400)
Q Consensus       158 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  229 (400)
                      ..+..+...+..    ..+...+..+++...+.|   +......+...+..    ..+++.|..+|....+.|   ++..
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a  216 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG  216 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence            556666666554    345556666666655543   34444444444433    345666666666665554   2334


Q ss_pred             HHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 015811          230 SNVIMNELCK----NGKMDNASRLLDLMVQCD  257 (400)
Q Consensus       230 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  257 (400)
                      +..|...|..    ..+.++|.+.|++..+.|
T Consensus       217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            4444444443    225556666666655544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=6.5e-08  Score=77.64  Aligned_cols=204  Identities=10%  Similarity=-0.047  Sum_probs=135.8

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----CccH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSI----GLFP-DLYTYSILINCFCKMGQVSLGFVIFGRILRSCF-----APNV   81 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~   81 (400)
                      ..|......|...|++++|.+.|.++...    +-++ -..+|..+..+|.+.|++++|.+.+++..+...     ....
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            46888899999999999999999998653    2112 246789999999999999999999998776321     1124


Q ss_pred             HHHHHHHHHHHh-cCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccC
Q 015811           82 VTFTSLIKGLCA-ESRIVEAAALFTKLKAF----GCEP-NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKP  155 (400)
Q Consensus        82 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  155 (400)
                      .++..+...|.. .|++++|...+++..+.    +.++ ...++..+...+...|++++|+..|+++......... ...
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~-~~~  196 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-SQW  196 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-TGG
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh-hhh
Confidence            456666666644 69999999999987643    1111 1345777899999999999999999998876522110 001


Q ss_pred             C-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC---hHhHHHHHHHHHh--cCCHHHHHHHHH
Q 015811          156 N-TVTYSIIIDGLCKEGFVDKAKELFLQMKYENLN-PN---VVTYTSLIHGFCH--ANDWNEAKGLLI  216 (400)
Q Consensus       156 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~~~~~~a~~~~~  216 (400)
                      . ...+...+.++...++++.|...++...+.... ++   ......++.++..  .+.+++|+..|+
T Consensus       197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~  264 (290)
T d1qqea_         197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (290)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1 122344555667789999999999888764211 11   1233444444433  233555555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.3e-07  Score=64.05  Aligned_cols=94  Identities=11%  Similarity=-0.023  Sum_probs=79.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      ..-...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+...++.+ +.+...|..+..++...
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence            345667888899999999999988775 5578888888999999999999999999988875 34778888888999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 015811           95 SRIVEAAALFTKLKAF  110 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~  110 (400)
                      |++++|+..|++..+.
T Consensus        85 ~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TCHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999998876

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.1e-07  Score=63.02  Aligned_cols=95  Identities=11%  Similarity=-0.032  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 015811           50 SILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRT  129 (400)
Q Consensus        50 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  129 (400)
                      ..-...+...|++++|+..|++.++.. +.+...|..+..++...|++++|+..+....+.+ +.+...|..+..++...
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence            344677889999999999999999986 4478889999999999999999999999999886 67888999999999999


Q ss_pred             CChHHHHHHHHHHHcCC
Q 015811          130 GHTIVALNLFKEMTNGN  146 (400)
Q Consensus       130 ~~~~~a~~~~~~~~~~~  146 (400)
                      |++++|+..|++..+..
T Consensus        85 ~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             TCHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHhC
Confidence            99999999999999864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.4e-07  Score=68.02  Aligned_cols=107  Identities=7%  Similarity=0.003  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLC   92 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   92 (400)
                      .+......|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.++.. +.+..+|..+..++.
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            34556678899999999999999999876 5688999999999999999999999999999875 337789999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015811           93 AESRIVEAAALFTKLKAFGCEPNVITYNTL  122 (400)
Q Consensus        93 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  122 (400)
                      ..|++++|...+++..... +-+...+..+
T Consensus        90 ~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l  118 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVK-PHDKDAKMKY  118 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence            9999999999999999874 3344444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.77  E-value=1.8e-05  Score=62.06  Aligned_cols=49  Identities=6%  Similarity=-0.037  Sum_probs=25.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHhhhhhCC
Q 015811          276 GKINRVKELFVSMESMGCKHDDFSYNILINGYCK----NKEVEEALSLYNELPFKG  327 (400)
Q Consensus       276 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  327 (400)
                      .+++.|...|++..+.|   ++..+..|...|..    ..+.++|..+|++..+.|
T Consensus       196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            45566666666665544   33444445555443    235555666666555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.9e-07  Score=65.64  Aligned_cols=119  Identities=13%  Similarity=0.023  Sum_probs=85.4

Q ss_pred             HHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 015811          233 IMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE  312 (400)
Q Consensus       233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  312 (400)
                      ....|.+.|++++|...|.++.+.+ +.+...|..+..+|...|++++|...|+++++.. +.+...|..++.++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            3556778888888888888888775 5567788888888888888888888888888875 5567788888888888888


Q ss_pred             HHHHHHHHhhhhhCCCCcCHHHHHHHHHH--HhccchHHHHHHH
Q 015811          313 VEEALSLYNELPFKGIKPTVVTYNTLFHG--LFEIRQAERALKL  354 (400)
Q Consensus       313 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~  354 (400)
                      +++|...+++....... +...+..+..+  ....+.++++...
T Consensus        94 ~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          94 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888776321 33444333322  2333445555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=3.5e-08  Score=74.55  Aligned_cols=100  Identities=16%  Similarity=0.051  Sum_probs=88.6

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      |++..+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+..++..+ -+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence            677788888999999999999999999988876 56888999999999999999999999999998753 3677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 015811           89 KGLCAESRIVEAAALFTKLKAF  110 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~  110 (400)
                      .+|...|++++|...|++..+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.66  E-value=2.1e-07  Score=62.44  Aligned_cols=92  Identities=9%  Similarity=-0.085  Sum_probs=65.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHh
Q 015811           14 FNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCA   93 (400)
Q Consensus        14 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   93 (400)
                      +-.+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|...|++.++.. +.+..++..+..+|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence            3345666777777777777777777664 3367777777777777777777777777777764 2356677777777777


Q ss_pred             cCCHHHHHHHHHHH
Q 015811           94 ESRIVEAAALFTKL  107 (400)
Q Consensus        94 ~~~~~~a~~~~~~~  107 (400)
                      .|++++|.+.+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            77777777777765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=4.9e-07  Score=68.02  Aligned_cols=97  Identities=10%  Similarity=-0.036  Sum_probs=50.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      +...+......+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..|++.....       |-+..+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-------p~~~~a   74 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKA   74 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------CCcHHH
Confidence            34444444555555555555555555555443 3344455555555555555555555555555432       233445


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 015811          160 YSIIIDGLCKEGFVDKAKELFLQMK  184 (400)
Q Consensus       160 ~~~l~~~~~~~~~~~~a~~~~~~~~  184 (400)
                      |..+..++...|++++|+..|+++.
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5555555555555555555555544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.3e-07  Score=62.25  Aligned_cols=99  Identities=15%  Similarity=0.079  Sum_probs=79.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhccCCcc-HHHHHHHHHH
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQ---VSLGFVIFGRILRSCFAPN-VVTFTSLIKG   90 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~   90 (400)
                      ..++..+...+++++|.+.|++....+ +.+..++..+..++.+.++   +++|+.++++++..+..|+ ..++..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            467788888999999999999998876 6688888889888887554   4569999999888654443 3467788899


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCh
Q 015811           91 LCAESRIVEAAALFTKLKAFGCEPNV  116 (400)
Q Consensus        91 ~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (400)
                      |.+.|++++|.+.|+++++.  .|+-
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~  105 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQN  105 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence            99999999999999999987  4543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.57  E-value=3.9e-07  Score=61.04  Aligned_cols=88  Identities=10%  Similarity=-0.018  Sum_probs=45.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchH
Q 015811          269 MDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQA  348 (400)
Q Consensus       269 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  348 (400)
                      ...+.+.|++++|...++++.+.. +.+...|..+..++.+.|++++|+..+++..+.. +-+...|..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            344455555555555555555543 3345555555555555555555555555555442 11344555555555555555


Q ss_pred             HHHHHHHHHH
Q 015811          349 ERALKLFVEM  358 (400)
Q Consensus       349 ~~a~~~~~~~  358 (400)
                      ++|++.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.8e-07  Score=61.89  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHhhhhhCCCCcCH-HHHHHHHHHHh
Q 015811          268 LMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKE---VEEALSLYNELPFKGIKPTV-VTYNTLFHGLF  343 (400)
Q Consensus       268 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~  343 (400)
                      ++..+...+++++|.+.|++....+ +.++.++..+..++.+.++   +++|+.+++++...+..|+. .+|..+..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4444445555555555555555544 3445555555555544332   33455555555543222221 23444455555


Q ss_pred             ccchHHHHHHHHHHHhh
Q 015811          344 EIRQAERALKLFVEMQG  360 (400)
Q Consensus       344 ~~~~~~~a~~~~~~~~~  360 (400)
                      +.|++++|++.|+++++
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            55555555555555554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.46  E-value=0.00019  Score=57.48  Aligned_cols=211  Identities=11%  Similarity=0.093  Sum_probs=124.3

Q ss_pred             CCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHH
Q 015811            9 PPVSSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLI   88 (400)
Q Consensus         9 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   88 (400)
                      ||..--..+...|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+.+.+.      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            4445556677888899999999999986542         667788888999999988877653      2566888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHH
Q 015811           89 KGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLC  168 (400)
Q Consensus        89 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (400)
                      ..+.+......+.     +.......++.....++..|-..|.+++...+++......       ..+...++.++..|+
T Consensus        77 ~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-------~~~~~~~~~L~~lya  144 (336)
T d1b89a_          77 FACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-------ccchHHHHHHHHHHH
Confidence            8888877665432     2223334466666788899999999999999999876543       456677888888888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH----------HHCCCCCCcccHHHHHHHHH
Q 015811          169 KEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEM----------VDQGVQPNVVSSNVIMNELC  238 (400)
Q Consensus       169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~  238 (400)
                      +.+ .++..+.+....   ...+   ...++..|-+.+-++++.-++..+          .++  +++..-....+..+.
T Consensus       145 k~~-~~kl~e~l~~~s---~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~  215 (336)
T d1b89a_         145 KFK-PQKMREHLELFW---SRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIIT  215 (336)
T ss_dssp             TTC-HHHHHHHHHHHS---TTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHH
T ss_pred             HhC-hHHHHHHHHhcc---ccCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHH
Confidence            764 444444443321   1111   223334444444444444333322          222  344555555666677


Q ss_pred             hcCCchhHHHHHHHHHh
Q 015811          239 KNGKMDNASRLLDLMVQ  255 (400)
Q Consensus       239 ~~~~~~~a~~~~~~~~~  255 (400)
                      +..+++...++.....+
T Consensus       216 k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         216 KVANVELYYRAIQFYLE  232 (336)
T ss_dssp             HCSSTHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHH
Confidence            77777666666655544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.3e-06  Score=57.96  Aligned_cols=103  Identities=11%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCC-cc-----HHHHHH
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFA-PN-----VVTFTS   86 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~   86 (400)
                      .+..+...+.+.|++++|+..|++.++.+ +.+..++..+..+|.+.|++++|+..++++++.... +.     ..+|..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45667888999999999999999998876 557889999999999999999999999998874321 11     235667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 015811           87 LIKGLCAESRIVEAAALFTKLKAFGCEPNVIT  118 (400)
Q Consensus        87 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  118 (400)
                      +...+...+++++|...|++....  .++...
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~  114 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV  114 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence            777888888999999999887765  344443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.7e-05  Score=57.30  Aligned_cols=125  Identities=6%  Similarity=-0.080  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 015811          194 TYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFC  273 (400)
Q Consensus       194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  273 (400)
                      .+......+.+.|++++|+..|.+.+.........              .+.-......+       -..+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------chHHHhhhchh-------HHHHHHHHHHHHH
Confidence            34444556777778888888777776542110000              00000111111       1235677888899


Q ss_pred             cCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCc-CHHHHHHHHHHH
Q 015811          274 LTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKP-TVVTYNTLFHGL  342 (400)
Q Consensus       274 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  342 (400)
                      +.|++++|...++..++.+ |.++..|..+..+|...|++++|...|++..+.  .| +......+-...
T Consensus        74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            9999999999999998876 558888999999999999999999999998876  34 444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.9e-05  Score=57.13  Aligned_cols=63  Identities=10%  Similarity=-0.088  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +|+.+..+|.+.|++++|+..++..++.. |.++.++..+..++...|++++|+..|++..+..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            45667777788888888888888887774 4467777778888888888888888888877753

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=0.00064  Score=54.32  Aligned_cols=263  Identities=8%  Similarity=-0.002  Sum_probs=146.0

Q ss_pred             chHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHH
Q 015811           12 SSFNILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGL   91 (400)
Q Consensus        12 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (400)
                      .-|..++..+.+.++++.|.+++.+.      -+..+|..+...|.+......+     .+.......+......++..|
T Consensus        41 ~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~y  109 (336)
T d1b89a_          41 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYY  109 (336)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHH
Confidence            44667888888888888888776543      3677899999999887766543     222333334556667889999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCC-cccccccCChhhHHHHHHHHHhc
Q 015811           92 CAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNG-EIGVVFKPNTVTYSIIIDGLCKE  170 (400)
Q Consensus        92 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~  170 (400)
                      -..|.+++...+++...... +.+...++.++..|++.+ .++..+.++.....-. ......-.....|.-++-.|.+.
T Consensus       110 e~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         110 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence            99999999999999876442 556777888999888865 4454555544322110 00000000112234444445555


Q ss_pred             CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCchhHHHHH
Q 015811          171 GFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCKNGKMDNASRLL  250 (400)
Q Consensus       171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  250 (400)
                      |+++.|..++-   +.  .++..-....+..+.+..+.+...+++...++.    ++...+.++......-+..      
T Consensus       188 ~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~------  252 (336)
T d1b89a_         188 EEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHT------  252 (336)
T ss_dssp             TCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHH------
T ss_pred             CCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHH------
Confidence            55554443322   11  223333344455555555555444444443332    1122233333322222222      


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 015811          251 DLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYN  321 (400)
Q Consensus       251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  321 (400)
                                      .++..+.+.+++.....+++...+.+   +....+++...|...++++.-....+
T Consensus       253 ----------------r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         253 ----------------RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             ----------------HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----------------HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence                            23333444555556666666655543   34566777777777777655444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.23  E-value=3.9e-05  Score=54.29  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCCC----CCC-----------HHhHHHHHHHHHhcCChhhHHHHHHHHHhccC
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIGL----FPD-----------LYTYSILINCFCKMGQVSLGFVIFGRILRSCF   77 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~----~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   77 (400)
                      .+..-...+.+.|++.+|+..|.++...-.    .++           ..+|..+..+|.+.|++++|++.++.+++.+ 
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-   97 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-   97 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence            455566788899999999999999875311    111           2356667777888888888888888888775 


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 015811           78 APNVVTFTSLIKGLCAESRIVEAAALFTKLKAFG  111 (400)
Q Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  111 (400)
                      +.+..+|..+..++...|++++|...|++..+..
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3377788888888888888888888888888773

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.7e-06  Score=56.03  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHH
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSII  163 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  163 (400)
                      +..+...+...|++++|+..|.+.++.+ +.+..++..+..+|...|++++|+..++++.+..+........-..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            4456677888888888888888888875 456778888888888888888888888887764310000000002355666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHc
Q 015811          164 IDGLCKEGFVDKAKELFLQMKYE  186 (400)
Q Consensus       164 ~~~~~~~~~~~~a~~~~~~~~~~  186 (400)
                      ...+...+++++|++.|.+....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            67778888999999999887765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.2e-06  Score=75.77  Aligned_cols=228  Identities=8%  Similarity=-0.094  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHH
Q 015811           64 LGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV-ITYNTLINGLCRTGHTIVALNLFKEM  142 (400)
Q Consensus        64 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~  142 (400)
                      +|.+.|++..+... .....+..+..++...+++++|   |++++..  .|+. ...+... .+. ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~p-~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLKA-DMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ-DLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHHG-GGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH-HHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH-HHH-HHHHHHHHHHHHHh
Confidence            67888998887532 2345666777888888888776   6776654  2321 1111111 111 12245677777777


Q ss_pred             HcCCCcccccccCChhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811          143 TNGNGEIGVVFKPNTVTYSIIIDG--LCKEGFVDKAKELFLQMKYENLNPNVVTYTSLIHGFCHANDWNEAKGLLIEMVD  220 (400)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  220 (400)
                      .+..      ..++..-....+..  ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.....
T Consensus        76 ~k~~------~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  148 (497)
T d1ya0a1          76 AKNR------ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS  148 (497)
T ss_dssp             HSCS------SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred             cccc------cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence            6544      22333222222212  222345555555554443322 23456677778888888999999888877665


Q ss_pred             CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 015811          221 QGVQPNVVSSNVIMNELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSY  300 (400)
Q Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  300 (400)
                      ..   ...++..+...+...|++++|...|.+..+.. +-+...|+.+...+...|+..+|...|.+..... +|-+.++
T Consensus       149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~  223 (497)
T d1ya0a1         149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS  223 (497)
T ss_dssp             HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred             CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence            32   23567778889999999999999999999875 5667899999999999999999999999999876 6788888


Q ss_pred             HHHHHHHHhcC
Q 015811          301 NILINGYCKNK  311 (400)
Q Consensus       301 ~~l~~~~~~~~  311 (400)
                      ..|...+.+..
T Consensus       224 ~nL~~~~~~~~  234 (497)
T d1ya0a1         224 TNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            88888776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.4e-07  Score=76.46  Aligned_cols=114  Identities=11%  Similarity=-0.069  Sum_probs=50.7

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh
Q 015811          115 NVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKYENLNPNVVT  194 (400)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  194 (400)
                      +...+..+...+.+.|+.++|...+.......         ...++..+...+...+++++|...|.+..+.. +-+...
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~  188 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQP  188 (497)
T ss_dssp             ------------------------CCHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHH
Confidence            34445555555666666666665555443311         12345555666666666666666666666553 224456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 015811          195 YTSLIHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIMNELCK  239 (400)
Q Consensus       195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (400)
                      |+.+...+...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            6666666666666666666666666553 3444555555555443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=3.3e-05  Score=55.74  Aligned_cols=80  Identities=9%  Similarity=-0.089  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhh
Q 015811           80 NVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVT  159 (400)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
                      ....+..+..++.+.|++++|+..+.+.++.. +.++.+|..+..++...|++++|+..|++..+..       +.+...
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-------p~n~~~  147 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAI  147 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHH
Confidence            44566777888888999999999999988875 5567788888889999999999999999888754       344455


Q ss_pred             HHHHHHHH
Q 015811          160 YSIIIDGL  167 (400)
Q Consensus       160 ~~~l~~~~  167 (400)
                      ...+..+.
T Consensus       148 ~~~l~~~~  155 (169)
T d1ihga1         148 QAELLKVK  155 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.14  E-value=5.9e-05  Score=54.27  Aligned_cols=63  Identities=13%  Similarity=-0.025  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           83 TFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        83 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +|..+..+|.+.|++++|+..++..++.. +.+..+|..+..++...|++++|+..|.++....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45556677777888888888888877765 5567777777788888888888888888877654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.13  E-value=8.4e-05  Score=52.46  Aligned_cols=98  Identities=14%  Similarity=0.002  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhccCC---------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 015811           48 TYSILINCFCKMGQVSLGFVIFGRILRSCFA---------------PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGC  112 (400)
Q Consensus        48 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  112 (400)
                      .+..-...+.+.|++..|+..|.+.+..-..               ....+|..+..+|.+.|++++|+..++..++.. 
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-   97 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-   97 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence            3444556778899999999999998863210               113466778889999999999999999999886 


Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          113 EPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       113 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +.+..+|..+..++...|++++|+..|+......
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            6688999999999999999999999999999854

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=4.8e-05  Score=54.87  Aligned_cols=64  Identities=8%  Similarity=-0.074  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhC
Q 015811          262 AFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFK  326 (400)
Q Consensus       262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  326 (400)
                      ...+..+..++.+.|++++|+..+.++++.. +.+...|..+..++...|++++|+..|++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4455666777777788888888888777765 556777777777788888888888888777765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=9.8e-05  Score=53.52  Aligned_cols=102  Identities=13%  Similarity=0.100  Sum_probs=80.1

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhC--CCC-CC------------------HHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSI--GLF-PD------------------LYTYSILINCFCKMGQVSLGFVIFGRILR   74 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~--g~~-~~------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   74 (400)
                      .........|++++|.+.|...+..  |.. ++                  ...+..+..++...|++++|+..++.+++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3446778899999999999999874  211 00                  13567778888889999999999999988


Q ss_pred             ccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhh
Q 015811           75 SCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA-----FGCEPNVIT  118 (400)
Q Consensus        75 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  118 (400)
                      .. +-+...|..++.++...|+..+|++.|+++.+     .|+.|+..+
T Consensus        96 ~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          96 EH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            75 34888899999999999999999999988743     588887655

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.04  E-value=0.00011  Score=52.82  Aligned_cols=80  Identities=8%  Similarity=-0.061  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCCCcCHHHHHHHHHHH
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGIKPTVVTYNTLFHGL  342 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  342 (400)
                      ..|..+..+|.+.|++++|...++.+.+.+ +.+...|..+..++...|++++|...|+++.+... .+......+-...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            356667788888999999999999988876 66788888889999999999999999999887632 2444444443333


Q ss_pred             hc
Q 015811          343 FE  344 (400)
Q Consensus       343 ~~  344 (400)
                      ..
T Consensus       143 ~~  144 (168)
T d1kt1a1         143 KK  144 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.02  E-value=5.8e-06  Score=64.35  Aligned_cols=125  Identities=11%  Similarity=-0.034  Sum_probs=86.6

Q ss_pred             HHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHH
Q 015811           20 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVE   99 (400)
Q Consensus        20 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   99 (400)
                      -..+.|++++|+..+++.++.. +.+...+..+...++..|++++|.+.++...+..+. +...+..+...+...+..++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence            4567899999999999999886 668899999999999999999999999999987422 44455555454443333333


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811          100 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus       100 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +..-.......+-+++...+......+...|+.++|.+.++++.+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            22211111111112223334445667788999999999999987765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.99  E-value=1.4e-05  Score=62.07  Aligned_cols=122  Identities=11%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             HHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015811          237 LCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEA  316 (400)
Q Consensus       237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  316 (400)
                      ..+.|++++|...+++.++.. +.+...+..++..++..|++++|...++...+.. +.+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            346788888888888888775 5677788888888888888888888888887764 33444555555554444444443


Q ss_pred             HHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          317 LSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       317 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      ..-.......+-+++...+......+...|+.++|..+++++.+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            33222211111122233334445567778889999888888775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=0.00021  Score=51.73  Aligned_cols=71  Identities=8%  Similarity=0.091  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC
Q 015811          117 ITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGFVDKAKELFLQMKY-----ENLNPN  191 (400)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~  191 (400)
                      ..+..+...+...|++++|+..++++....       +.+...|..++.++.+.|+..+|++.|+++.+     .|+.|+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            344556666666666666666666666654       45566666666666666666666666666532     355555


Q ss_pred             hHh
Q 015811          192 VVT  194 (400)
Q Consensus       192 ~~~  194 (400)
                      ..+
T Consensus       141 ~~l  143 (179)
T d2ff4a2         141 PTL  143 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=5.1e-05  Score=52.99  Aligned_cols=115  Identities=9%  Similarity=-0.028  Sum_probs=83.6

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------CChhhHHHHHHHHHhccCCccHHHHHHHHHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKM----------GQVSLGFVIFGRILRSCFAPNVVTFTSLIKG   90 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   90 (400)
                      |-+.+.+++|+..|+...+.. |.+..++..+..++...          +.+++|+..|++.++.++ .+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHH
Confidence            345667999999999998876 66888888888888754          445789999999988753 377788888888


Q ss_pred             HHhcCC-----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811           91 LCAESR-----------IVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus        91 ~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                      |...|+           +++|.+.|++..+.  .|+...+..-+..+      .+|.+++.++.+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~  142 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQ  142 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            876553           57888888888877  56666655444433      3556666665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.90  E-value=3.1e-05  Score=54.14  Aligned_cols=112  Identities=11%  Similarity=0.031  Sum_probs=56.1

Q ss_pred             CCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcC----------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 015811          241 GKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLT----------GKINRVKELFVSMESMGCKHDDFSYNILINGYCKN  310 (400)
Q Consensus       241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  310 (400)
                      +.+++|...++...+.. |.+...+..+..++...          +.+++|...++++.+.+ |.+..+|..+..+|...
T Consensus        11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence            33445555555554443 33344444444443322          23456666666666654 44566666666666554


Q ss_pred             C-----------CHHHHHHHHhhhhhCCCCcCHHHHHHHHHHHhccchHHHHHHHHHHHhhCC
Q 015811          311 K-----------EVEEALSLYNELPFKGIKPTVVTYNTLFHGLFEIRQAERALKLFVEMQGND  362 (400)
Q Consensus       311 ~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  362 (400)
                      |           .+++|...|++..+.  .|+...+..-+..      ..+|.+++.+..+.|
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~------~~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM------TAKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred             ccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence            3           246666666666654  4554444333322      234445555544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.55  E-value=0.00043  Score=48.84  Aligned_cols=99  Identities=16%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             cchHHHH--HHHHHccCChhHHHHHHHHHHhCCC-CCC----------HHhHHHHHHHHHhcCChhhHHHHHHHHHhcc-
Q 015811           11 VSSFNIL--LGCLAKNKHYDTVLSLFKRLNSIGL-FPD----------LYTYSILINCFCKMGQVSLGFVIFGRILRSC-   76 (400)
Q Consensus        11 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~g~-~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-   76 (400)
                      ..+|..+  ...+.+.|++++|+..|++..+... .|+          ...|+.+..+|...|++++|.+.+++.++.. 
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3466666  5556677899999999998865311 111          3567778888888888888888877776521 


Q ss_pred             ----CCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811           77 ----FAP-----NVVTFTSLIKGLCAESRIVEAAALFTKLKA  109 (400)
Q Consensus        77 ----~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  109 (400)
                          ..+     ....+..+..+|...|++++|...|++..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                011     122455566777777777777777777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.45  E-value=0.0014  Score=46.16  Aligned_cols=99  Identities=15%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             HhHHHH--HHHHHhcCChhhHHHHHHHHHhccCC-c----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 015811           47 YTYSIL--INCFCKMGQVSLGFVIFGRILRSCFA-P----------NVVTFTSLIKGLCAESRIVEAAALFTKLKAF---  110 (400)
Q Consensus        47 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  110 (400)
                      .+|..+  ...+...|++++|++.|++.++.... |          ....|+.+..+|...|++++|...+++.++.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            355555  45566789999999999999874211 1          2457888999999999999999999887753   


Q ss_pred             --CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 015811          111 --GCEPN-----VITYNTLINGLCRTGHTIVALNLFKEMTNG  145 (400)
Q Consensus       111 --~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  145 (400)
                        ...++     ..+++.+..+|...|++++|+..|++..+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              11111     225677889999999999999999987653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00048  Score=43.77  Aligned_cols=64  Identities=9%  Similarity=-0.020  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHhCC-----CCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcc
Q 015811           13 SFNILLGCLAKNKHYDTVLSLFKRLNSIG-----LFPD-LYTYSILINCFCKMGQVSLGFVIFGRILRSC   76 (400)
Q Consensus        13 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   76 (400)
                      .+-.+...+.+.|++++|+..|++..+..     ..++ ..++..+..++.+.|++++|++.++++++..
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            33455666666666666666666654321     0111 3455566666666666666666666666553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0012  Score=41.72  Aligned_cols=77  Identities=13%  Similarity=-0.008  Sum_probs=59.0

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhccC-----C-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 015811           45 DLYTYSILINCFCKMGQVSLGFVIFGRILRSCF-----A-PNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVIT  118 (400)
Q Consensus        45 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  118 (400)
                      +...+..+...+.+.|+++.|...|++.++...     . ....++..+..++.+.|++++|...++++++.. |-+..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence            455666788889999999999999999876421     1 125678889999999999999999999999874 334445


Q ss_pred             HHHH
Q 015811          119 YNTL  122 (400)
Q Consensus       119 ~~~l  122 (400)
                      ++.+
T Consensus        83 ~~Nl   86 (95)
T d1tjca_          83 NGNL   86 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.88  E-value=0.027  Score=37.88  Aligned_cols=15  Identities=0%  Similarity=0.255  Sum_probs=6.5

Q ss_pred             ChHHHHHHHHHHHhc
Q 015811          277 KINRVKELFVSMESM  291 (400)
Q Consensus       277 ~~~~a~~~~~~~~~~  291 (400)
                      +.++|.++|++..+.
T Consensus        74 d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          74 DLRKAAQYYSKACGL   88 (133)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhhhcc
Confidence            344444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.039  Score=37.00  Aligned_cols=15  Identities=13%  Similarity=-0.040  Sum_probs=6.5

Q ss_pred             ChHHHHHHHHHHHHc
Q 015811          172 FVDKAKELFLQMKYE  186 (400)
Q Consensus       172 ~~~~a~~~~~~~~~~  186 (400)
                      +.++|.++|+...+.
T Consensus        74 d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          74 DLRKAAQYYSKACGL   88 (133)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhhhcc
Confidence            344444444444433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.42  Score=39.59  Aligned_cols=341  Identities=8%  Similarity=-0.026  Sum_probs=180.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhc
Q 015811           15 NILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAE   94 (400)
Q Consensus        15 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   94 (400)
                      ...+..+.+.+++...+..+.     ..+++...-.....+....|+.+.|...+..+-..|.. .......+...+...
T Consensus        76 ~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~  149 (450)
T d1qsaa1          76 SRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS  149 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc
Confidence            444667788888876554331     22456666677888888899998888887776655422 333344444444443


Q ss_pred             CCHH--HHHHHHHHHHHcC-----------CCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhH
Q 015811           95 SRIV--EAAALFTKLKAFG-----------CEPNVI-TYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTY  160 (400)
Q Consensus        95 ~~~~--~a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  160 (400)
                      |.+.  ...+-+..+...|           ++++.. .....+....   +...+......           .+.+....
T Consensus       150 ~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~-----------~~~~~~~~  215 (450)
T d1qsaa1         150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----------TGATDFTR  215 (450)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----------SCCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc-----------CCCChhhh
Confidence            3321  1122222222221           111111 1111222111   12222222111           11222222


Q ss_pred             HHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChHhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 015811          161 SIIIDGLCK--EGFVDKAKELFLQMKYENLNPNVVTYTSL----IHGFCHANDWNEAKGLLIEMVDQGVQPNVVSSNVIM  234 (400)
Q Consensus       161 ~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  234 (400)
                      ..+...+.+  ..+.+.+...+......... +..-+..+    .......+..+.+...+......+  .+.......+
T Consensus       216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~  292 (450)
T d1qsaa1         216 QMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV  292 (450)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHH
Confidence            223333322  35778888888877654322 22222222    222234466677777777766553  3444445555


Q ss_pred             HHHHhcCCchhHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 015811          235 NELCKNGKMDNASRLLDLMVQCDVRPNAFTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVE  314 (400)
Q Consensus       235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  314 (400)
                      ......+++..+...+..+.... .....-.-.+.+++...|+.+.|...|..+...   ++  .|..|...-... .+.
T Consensus       293 ~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~~Lg~-~~~  365 (450)
T d1qsaa1         293 RMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQRIGE-EYE  365 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHHHTTC-CCC
T ss_pred             HHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHHHcCC-CCC
Confidence            66677889998888888775432 223444566788888999999999999988742   33  344333222111 110


Q ss_pred             HHHHHHhhhhhCCCCc---CHHHHHHHHHHHhccchHHHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCcchhhHhhhh
Q 015811          315 EALSLYNELPFKGIKP---TVVTYNTLFHGLFEIRQAERALKLFVEMQGNDVAADTCTYRTFIDGLCVRPQVRFTYARRK  391 (400)
Q Consensus       315 ~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  391 (400)
                      -..   ... ......   ....+ .-+..+...|....|...|..+...   .+......+.....+.|.++.|+....
T Consensus       366 ~~~---~~~-~~~~~~~~~~~~~~-~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~  437 (450)
T d1qsaa1         366 LKI---DKA-PQNVDSALTQGPEM-ARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI  437 (450)
T ss_dssp             CCC---CCC-CSCCCCHHHHSHHH-HHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCc---CCC-CccHHHhhhcChHH-HHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence            000   000 000000   00011 2245667789999999999888753   245566677788889999998876655


Q ss_pred             CC
Q 015811          392 GN  393 (400)
Q Consensus       392 ~~  393 (400)
                      +.
T Consensus       438 ~~  439 (450)
T d1qsaa1         438 AG  439 (450)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.74  E-value=0.13  Score=33.36  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=91.4

Q ss_pred             HHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-c----------------CCccHHH
Q 015811           21 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRS-C----------------FAPNVVT   83 (400)
Q Consensus        21 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----------------~~~~~~~   83 (400)
                      +.-.|..++..+++.+....   .+..-||-++--....-+-+...++++.+-+. .                ..-+...
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~   88 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   88 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence            45578899999999988763   46666776666666666666555555554331 0                1124456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 015811           84 FTSLIKGLCAESRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGN  146 (400)
Q Consensus        84 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  146 (400)
                      +...++.+..+|+-+.-.+++..+.+.+ ++++.....+..+|.+.|...++-+++.+.-+.|
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            6777888999999999999999987766 7888999999999999999999999999998876

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.32  Score=31.58  Aligned_cols=47  Identities=6%  Similarity=0.046  Sum_probs=20.6

Q ss_pred             HHHHHHHHhhhhhCCCCcCH-HHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015811          313 VEEALSLYNELPFKGIKPTV-VTYNTLFHGLFEIRQAERALKLFVEMQG  360 (400)
Q Consensus       313 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  360 (400)
                      .++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++
T Consensus        54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344555555444331 1121 2333344445555555555555555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.38  E-value=0.35  Score=31.24  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhhCCC
Q 015811          263 FTYNTLMDGFCLTGKINRVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPFKGI  328 (400)
Q Consensus       263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  328 (400)
                      ..++..+.....+|+-++..++++.+.+.+ ++++...-.+..+|.+.|+..++-.++.++-+.|+
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            334444555556666666666666655543 55566666666666666666666666666655554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.00  E-value=0.44  Score=30.88  Aligned_cols=72  Identities=15%  Similarity=0.026  Sum_probs=49.3

Q ss_pred             CCCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 015811           43 FPDLYTYSILINCFCKMG---QVSLGFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKAFGCEPNV  116 (400)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  116 (400)
                      .++..+--....+++++.   +.++++.+++.+.+.+.......+-.|.-+|.+.|++++|.+.++.+++.  .|+-
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n  106 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  106 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence            456666666666777654   45578888888877542222356666777788888888888888888876  4543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.29  E-value=1.2  Score=27.20  Aligned_cols=46  Identities=2%  Similarity=0.023  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 015811          280 RVKELFVSMESMGCKHDDFSYNILINGYCKNKEVEEALSLYNELPF  325 (400)
Q Consensus       280 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  325 (400)
                      ++.+-++.+...+.-|++....+.+++|.+.+++..|.++++-...
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444555555555566666666666666666666666666665553

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.20  E-value=1.2  Score=27.17  Aligned_cols=45  Identities=7%  Similarity=0.034  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhccCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015811           65 GFVIFGRILRSCFAPNVVTFTSLIKGLCAESRIVEAAALFTKLKA  109 (400)
Q Consensus        65 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  109 (400)
                      ..+-+..+......|++.+..+.+++|.+.+++..|.++|+..+.
T Consensus        25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444444444455555555555555555555555555555543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=4.4  Score=33.15  Aligned_cols=140  Identities=13%  Similarity=0.056  Sum_probs=74.0

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhccCCc-cHHHHHHHHHHHHhc
Q 015811           16 ILLGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYSILINCFCKMGQVSLGFVIFGRILRSCFAP-NVVTFTSLIKGLCAE   94 (400)
Q Consensus        16 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~   94 (400)
                      ..+....++|+...+.++...+..   -| ...|...-..-...++. ...++...+.+..-.| ....-...+..+.+.
T Consensus        11 ~~a~~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~   85 (450)
T d1qsaa1          11 AQIKQAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARR   85 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhc
Confidence            344556678888888888777642   13 33444333332222221 1122333333321112 222233445667777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHcCCCcccccccCChhhHHHHHHHHHhcCC
Q 015811           95 SRIVEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTIVALNLFKEMTNGNGEIGVVFKPNTVTYSIIIDGLCKEGF  172 (400)
Q Consensus        95 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (400)
                      +++......+.     ..+.+...-.....+....|+..+|...+..+-..+       ...+..+..+...+...|.
T Consensus        86 ~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-------~~~p~~c~~l~~~~~~~~~  151 (450)
T d1qsaa1          86 EDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-------KSQPNACDKLFSVWRASGK  151 (450)
T ss_dssp             TCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-------SCCCTHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCchHHHHHHHHHHhcCC
Confidence            87766544331     123445545567777888888888888887776655       3344455555555544433