Citrus Sinensis ID: 015871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MSISSRSDGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msissrsdgesvfdVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVlgpdanlkEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Flexible Loop (DISEMBL)
msissrsdgesvfdveelLQIETRCRElrkekdtlresqsqsfdLIKRLELHAKSlseahnedKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEesisssalESQCEIESLKIDMIALEQTCVEAKKvhkenvqekarMNSLIKelevrtqdsqEIIECLDKENKELKekldsyetngrVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQiekgqnkfvatgrhlpi
Low Complexity Region (SEG)
MSISSRSDGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHikkleesisssalesQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIecldkenkelkeklDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQlkeelraekfkakeeaedlaQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Disordered region (IsUnstruct)
******************L********************************************************NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKV**************************************************CEIESLKIDMIALEQTCVEAKK****************************IIECL*************YETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKE************************YQMTSLLEEECKRRACIEQASLQRIA**********************
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************HLP*
Disordered Region (DISEMBL)
***********VFDVEELLQIETRCRELR***********QSFDLIKRLELHAKSLS********HIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Disordered Region (DISPRO)
***********VFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSISSRSDGESVFDVEExxxxxxxxxxxxxxxxxxxxxQSQSFDLIKRLELHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNARNEEVYSLSEHVHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxCLLLMEExxxxxxxxxxxxxxxxxxxxxISSSALESQCExxxxxxxxxxxxxxxxxxxxxHKENVQEKARMNSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxECKRRACIxxxxxxxxxxxxxxxxxxxxxFVATGRHLPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
255547265	407	conserved hypothetical protein [Ricinus	0.982	0.963	0.646	1e-132
297733914	420	unnamed protein product [Vitis vinifera]	0.964	0.916	0.624	1e-122
147853034	1164	hypothetical protein VITISV_035305 [Viti	0.914	0.313	0.587	1e-109
449439299	390	PREDICTED: uncharacterized protein LOC10	0.924	0.946	0.567	1e-102
356513505	997	PREDICTED: uncharacterized protein LOC10	0.944	0.378	0.568	1e-92
356564927	435	PREDICTED: uncharacterized protein LOC10	0.959	0.880	0.565	3e-90
297810891	409	hypothetical protein ARALYDRAFT_487621 [	0.967	0.943	0.517	1e-85
30682143	409	myosin heavy chain-like protein [Arabido	0.967	0.943	0.507	4e-84
222424375	409	AT5G07890 [Arabidopsis thaliana]	0.967	0.943	0.502	2e-82
224135329	295	predicted protein [Populus trichocarpa]	0.709	0.959	0.602	1e-76

>gi|255547265|ref|XP_002514690.1| conserved hypothetical protein [Ricinus communis] gi|223546294|gb|EEF47796.1| conserved hypothetical protein [Ricinus communis]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/404 (64%), Positives = 316/404 (78%), Gaps = 12/404 (2%)

Query: 5   SRSDGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDK 64
           S S G+S  DVEELLQI TRC+ELRKEKD LRESQSQSF+LI+RLELH KSLSEAH+ED+
Sbjct: 2   SSSSGDSTLDVEELLQIGTRCKELRKEKDMLRESQSQSFELIRRLELHVKSLSEAHSEDR 61

Query: 65  KHIQKLERELMNCSQEI-----------DYLQDQLNARNEEVYSLSEHVHSLELKLVDME 113
           KHIQKLEREL+NCSQEI           DYLQDQLNARN EVYSL EHVH LELKLVDM+
Sbjct: 62  KHIQKLERELLNCSQEIVWISKIITFLTDYLQDQLNARNAEVYSLGEHVHELELKLVDMD 121

Query: 114 ILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIE 173
            L  K+ QL+EELR+SDSEC LL++EL+ KE  L+ S   I+KLEES++S  L+SQCEIE
Sbjct: 122 DLLVKISQLQEELRKSDSECFLLIQELERKEVELQKSVSFIEKLEESVASFTLDSQCEIE 181

Query: 174 SLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKE 233
           S+K+D++ALEQ C E+KK  +E   EK  M+ L++EL+ +  D++EII+CL+KENKEL+ 
Sbjct: 182 SMKLDVMALEQACCESKKKQEETTMEKDTMDGLVQELKNQVYDAEEIIQCLEKENKELRV 241

Query: 234 KLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSK 293
           KL + E NGR+F QKIEEWME +D   L  Q   SELE+   +SKE   CG+V G L SK
Sbjct: 242 KLATSEMNGRIFIQKIEEWMENQDNLLLSTQPYSSELEKE-NMSKEMSACGEVLGLLFSK 300

Query: 294 LALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQ 353
           LA+VL P+++LK+++K +S +I EYE+L+ QLKE+LR EK KAKEEAEDLAQEMAELR+Q
Sbjct: 301 LAIVLAPESDLKKQMKRLSHKIREYEVLMNQLKEDLREEKLKAKEEAEDLAQEMAELRHQ 360

Query: 354 MTSLLEEECKRRACIEQASLQRIAELETQIEKGQNKFVATGRHL 397
           MT LLEEECKRRACIEQASLQRIAELE QI+K Q K     R L
Sbjct: 361 MTGLLEEECKRRACIEQASLQRIAELEAQIQKEQRKPSFAIRTL 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733914|emb|CBI15161.3| unnamed protein product [Vitis vinifera]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/389 (62%), Positives = 301/389 (77%), Gaps = 4/389 (1%)

Query: 13  FDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLER 72
           +D+E+LLQIETRC++L++E + LRESQS+SF+LI+RLELH ++LSEA +ED+KHIQ+LER
Sbjct: 29  YDIEDLLQIETRCKQLKRETNMLRESQSESFELIRRLELHVRTLSEARSEDEKHIQELER 88

Query: 73  ELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSE 132
           EL NCSQEIDYLQDQLNAR+ EV  L EHVHSLELKL D + L+D VG+L +EL+RS+SE
Sbjct: 89  ELRNCSQEIDYLQDQLNARDAEVKCLGEHVHSLELKLADKDNLEDMVGRLMQELKRSNSE 148

Query: 133 CLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV 192
           C+LLM+EL++KE  L+ S+L I KLEESISS  LE QCE+ES+K++MI LEQ+C EAKK+
Sbjct: 149 CMLLMQELENKEVELQMSSLCIDKLEESISSVTLEFQCEMESMKLEMITLEQSCFEAKKL 208

Query: 193 HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKI--- 249
             E  +EK +MN LI+E +V+ QD+Q++IECLDKENKEL+ KL + E +  +  QKI   
Sbjct: 209 QDEASEEKTKMNGLIQEFQVQLQDAQKMIECLDKENKELRGKLKTSEMDAILLRQKIKEH 268

Query: 250 -EEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKI 308
            EEW+E +D  +L  QS   ELE  F +S E     +V   L  KLA+    D  LKEK+
Sbjct: 269 SEEWLENKDESELKTQSSSGELESKFNLSTEMSTSAEVLVPLFPKLAVSATSDVGLKEKM 328

Query: 309 KGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACI 368
           + MS QI  YELLVKQLKEELR EK KAKEEAEDLAQEMAELRYQ+T +LEEECKRRACI
Sbjct: 329 EKMSHQIHGYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITGMLEEECKRRACI 388

Query: 369 EQASLQRIAELETQIEKGQNKFVATGRHL 397
           EQASLQRIAELE QI+K Q K  A  R  
Sbjct: 389 EQASLQRIAELEAQIQKEQTKSYAAIRRF 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853034|emb|CAN78532.1| hypothetical protein VITISV_035305 [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/393 (58%), Positives = 281/393 (71%), Gaps = 28/393 (7%)

Query: 13   FDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLER 72
            +D+E+LLQIETRC++                    RLELH ++LSEA +ED+KHIQ+LER
Sbjct: 789  YDIEDLLQIETRCKQ--------------------RLELHVRTLSEARSEDEKHIQELER 828

Query: 73   ELMNCSQEI----DYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRR 128
            EL NCSQEI    DYLQDQLNAR+ EV  L EH HSLELKL D + L+D VG+L EEL+R
Sbjct: 829  ELRNCSQEIVFLVDYLQDQLNARDAEVKCLGEHAHSLELKLADKDNLEDMVGRLMEELKR 888

Query: 129  SDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVE 188
            S+SEC+ LM+EL++KE  L+ S+L I KLEESISS  LE QCEIES+K++MI LEQ+C E
Sbjct: 889  SNSECMFLMQELENKEVELQTSSLCIDKLEESISSVTLEFQCEIESMKLEMITLEQSCFE 948

Query: 189  AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQK 248
            AKK+  E  +EK +MN LI+E +V+ QD+Q++IECLDKENKEL+ KL + E +  +  QK
Sbjct: 949  AKKLQDEASEEKTKMNGLIQEFQVQLQDAQKMIECLDKENKELRGKLKTSEMDAILLRQK 1008

Query: 249  I----EEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANL 304
            I    EEW+E +D  +L  QS   ELE  F +S E     +V   L  KLA+    D  L
Sbjct: 1009 IKEHSEEWLENKDESELKTQSSSGELESKFNLSTEMSTSAEVLVPLFPKLAVSATSDVXL 1068

Query: 305  KEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKR 364
            KEK++ MS QI  YELLVKQLKEELR EK KAKEEAEDLAQEMAELRYQ+T +LEEECKR
Sbjct: 1069 KEKMEKMSHQIHGYELLVKQLKEELREEKLKAKEEAEDLAQEMAELRYQITGMLEEECKR 1128

Query: 365  RACIEQASLQRIAELETQIEKGQNKFVATGRHL 397
            RACIEQASLQRIAELE QI+K Q K  A  R  
Sbjct: 1129 RACIEQASLQRIAELEAQIQKEQTKSYAAIRRF 1161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439299|ref|XP_004137423.1| PREDICTED: uncharacterized protein LOC101221046 [Cucumis sativus] gi|449486970|ref|XP_004157457.1| PREDICTED: uncharacterized protein LOC101230337 [Cucumis sativus]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/386 (56%), Positives = 277/386 (71%), Gaps = 17/386 (4%)

Query: 14  DVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERE 73
           D+EELL+I TRCR+L+KEKDTL +S+ QSF+LI RLELH  SLSEA  EDK  I+ LE+E
Sbjct: 13  DLEELLEIGTRCRQLKKEKDTLIDSRPQSFELI-RLELHVNSLSEARKEDKLRIENLEKE 71

Query: 74  LMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSEC 133
           L NC+QEIDYLQDQL  RN E+  L +HV SLE KLV ME  Q+K  +LEEE++RS+SEC
Sbjct: 72  LTNCTQEIDYLQDQLCTRNTELTYLVDHVESLEFKLVHMEHSQEKASKLEEEVKRSNSEC 131

Query: 134 LLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVH 193
           L LM++L  KE+ LR S  +++KLEESIS+  LESQCEIES+K+DM+A+EQ  +E KK  
Sbjct: 132 LFLMQKLDDKEQELRESNSNVEKLEESISAITLESQCEIESMKLDMLAMEQRYIETKKFQ 191

Query: 194 KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 253
           +E + +  +M+ LI+EL    Q++Q  ++ L+ EN+EL+ +LD    N   FC+ +EE +
Sbjct: 192 EEALSQNDKMDRLIEEL----QNAQRNVKFLETENEELQRELDVSTRNASTFCRSVEELI 247

Query: 254 EKEDRKQLDIQSLVSELERNFTVSKETCF----CGKVFGALLSKLALVLGPDANLKEKIK 309
           E ++R Q  +        RN    K T      CG V G LL KLA+ L  DAN + K+ 
Sbjct: 248 ENKERSQNTM--------RNDRDGKLTSILKNSCGDVLGHLLPKLAVALFADANSEAKMD 299

Query: 310 GMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIE 369
            M  QI +YELLV+QLKEELR EK KAKEEAEDLAQEMAELRYQ+T LLEEECKRRACIE
Sbjct: 300 VMKKQILDYELLVEQLKEELREEKLKAKEEAEDLAQEMAELRYQITGLLEEECKRRACIE 359

Query: 370 QASLQRIAELETQIEKGQNKFVATGR 395
           QASLQRIA+LE Q+ KGQN+     R
Sbjct: 360 QASLQRIAQLEAQVLKGQNRSFPVAR 385

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513505|ref|XP_003525454.1| PREDICTED: uncharacterized protein LOC100781747 [Glycine max]

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 216/380 (56%), Positives = 276/380 (72%), Gaps = 3/380 (0%)

Query: 6   RSDGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKK 65
           RSD  +  + EEL     R  + RKEKD L+ SQSQS   I+ LE   KS SEAH EDKK
Sbjct: 616 RSDHLTPLNGEEL-STRRRREQHRKEKDVLQSSQSQSIQPIQMLEQCEKSKSEAHAEDKK 674

Query: 66  HIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEE 125
           HIQ+LE+EL+NCSQEIDYLQDQL+ARN EV  L EH+H+LELKL  ME LQ++V +L EE
Sbjct: 675 HIQRLEKELLNCSQEIDYLQDQLSARNAEVNYLEEHIHNLELKLEGMEDLQEEVFRLREE 734

Query: 126 LRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQT 185
           L+RS+S+   L++EL +KE+ L  SAL I+KLEES SS  LESQ E+ES+K+DM+ LEQ+
Sbjct: 735 LKRSESKQFSLIQELDTKEKELEKSALSIEKLEESFSSITLESQFEVESMKLDMMVLEQS 794

Query: 186 CVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVF 245
             EAKK+  E + E  RM+  I+EL+V  QD+Q+II  L++E +EL+EKLD+   N R+ 
Sbjct: 795 LFEAKKIQDETLDENNRMSRSIEELQVALQDAQKIIITLNEEIRELEEKLDTANQNSRIS 854

Query: 246 CQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLK 305
            QK E W+E +DR QL+ QS ++    N T+ +E     +V G  + +LA++L P A+LK
Sbjct: 855 SQKDEYWLENKDRSQLETQSSLNVRGNNSTM-QEDISTYEVCGPHVGRLAMILDPAADLK 913

Query: 306 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRR 365
            K++ MS QI EYE L+K+LKEELR EK KAKEEAEDL QEMAELRYQ T  LEEECKRR
Sbjct: 914 GKME-MSQQIQEYECLIKKLKEELREEKLKAKEEAEDLVQEMAELRYQFTGSLEEECKRR 972

Query: 366 ACIEQASLQRIAELETQIEK 385
           AC E ASLQRIAELE Q+++
Sbjct: 973 ACFEHASLQRIAELEAQLKR 992

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564927|ref|XP_003550698.1| PREDICTED: uncharacterized protein LOC100805706 [Glycine max]

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 219/387 (56%), Positives = 273/387 (70%), Gaps = 4/387 (1%)

Query: 1   MSISSRSDGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAH 60
           MS S RSD  +  + E+L     R  E RKEK  L+ SQSQS   ++ LE H  S  EAH
Sbjct: 1   MSNSCRSDNHTPLNAEQLSTRRRR--EHRKEKGVLQSSQSQSIQSVQILEQHKMSFLEAH 58

Query: 61  NEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVG 120
            EDKKHIQ LE+EL+NCSQEIDYLQDQL+A N EV  L EH+ SLELKL  ME LQ++V 
Sbjct: 59  AEDKKHIQGLEKELLNCSQEIDYLQDQLSASNTEVNYLEEHIRSLELKLEGMEDLQEEVF 118

Query: 121 QLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMI 180
           +L EEL+RS+S+   L++EL +KE  L  SAL I+KLEES SS  LESQ E+ES+K+DM+
Sbjct: 119 RLREELKRSNSKHFFLIQELDTKEIELEKSALSIEKLEESFSSITLESQFEVESMKLDMM 178

Query: 181 ALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240
           ALEQ+  EAKK+  E + E  RM+  I+EL+V  QD+Q+II  L++EN++LKEKLD    
Sbjct: 179 ALEQSLFEAKKIQDETLDENNRMSRSIEELQVALQDAQKIIISLNEENRKLKEKLDIANK 238

Query: 241 NGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGP 300
           N R+  QK E W+E  DR QL+ QS ++    N T+ ++    G V G  + +LA++L  
Sbjct: 239 NSRISSQKDEYWLENNDRLQLETQSSLNGRGNNSTILEDIRTYG-VHGPHVGRLAMILYL 297

Query: 301 DANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEE 360
            A+LK K++ MS QI EYE L+K+LKEELR EK +AKEEAEDL QEMAELRYQ TS LEE
Sbjct: 298 AADLKGKME-MSQQIQEYECLIKKLKEELREEKLRAKEEAEDLVQEMAELRYQFTSSLEE 356

Query: 361 ECKRRACIEQASLQRIAELETQIEKGQ 387
           ECKRRACIE ASLQRIAELE Q   GQ
Sbjct: 357 ECKRRACIEHASLQRIAELEAQAATGQ 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810891|ref|XP_002873329.1| hypothetical protein ARALYDRAFT_487621 [Arabidopsis lyrata subsp. lyrata] gi|297319166|gb|EFH49588.1| hypothetical protein ARALYDRAFT_487621 [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 203/392 (51%), Positives = 280/392 (71%), Gaps = 6/392 (1%)

Query: 8   DGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHI 67
           D E+ FDVEELLQI T  RELRK+KD LRESQ  S +L++RLELH KSLSE+  ED   I
Sbjct: 21  DCENSFDVEELLQIGTTRRELRKQKDMLRESQPHSIELVRRLELHTKSLSESRLEDTARI 80

Query: 68  QKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELR 127
           Q +E+EL+NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL 
Sbjct: 81  QMMEKELLNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELC 140

Query: 128 RSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCV 187
            S SE LLL++EL+SKE  L+ S+L ++KLEE+ISS  LES CEIES+KID+ ALEQ   
Sbjct: 141 MSKSEHLLLLQELESKEIELQCSSLSLEKLEETISSLTLESLCEIESMKIDITALEQALF 200

Query: 188 EAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQ 247
           +A K+ +E++QEK ++  +I+E + ++Q +QE ++ ++K+N+EL+EK ++ E + + F Q
Sbjct: 201 DAMKIQEESIQEKHQLKGIIEESQFQSQRAQENVKYIEKQNEELREKFNASEKSIKEFFQ 260

Query: 248 KIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEK 307
             +E +E ED + L +    +EL     +S E   C   F A++ KL   L  + NL +K
Sbjct: 261 STKERLESEDEEPLTVGCFFAELSHVLPMSNEVRNC---FDAIMKKLE--LSQNVNLTDK 315

Query: 308 IKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRAC 367
           ++GM+ QI ++E +VKQLKEEL+ EK KAKEEAEDL QEMAELRY+MT LL+EE  RR C
Sbjct: 316 VEGMAKQIHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVC 375

Query: 368 IEQASLQRIAELETQIEKGQNKFVATGRHLPI 399
           IEQASLQRIAELE QI K + K  ++   LP+
Sbjct: 376 IEQASLQRIAELEAQI-KREIKKPSSTEMLPL 406

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682143|ref|NP_196406.2| myosin heavy chain-like protein [Arabidopsis thaliana] gi|79327239|ref|NP_001031851.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|222423567|dbj|BAH19753.1| AT5G07890 [Arabidopsis thaliana] gi|332003833|gb|AED91216.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|332003835|gb|AED91218.1| myosin heavy chain-like protein [Arabidopsis thaliana]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 199/392 (50%), Positives = 278/392 (70%), Gaps = 6/392 (1%)

Query: 8   DGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHI 67
           D E+ FDVE+LLQI T  RELRK+KD LRESQ  S +L++RLELH KSLSE+  ED   I
Sbjct: 21  DCENSFDVEDLLQIGTTRRELRKQKDLLRESQPHSIELVRRLELHTKSLSESRLEDTARI 80

Query: 68  QKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELR 127
           Q +E+EL+NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL 
Sbjct: 81  QMMEKELLNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELC 140

Query: 128 RSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCV 187
            S SE LLL++EL+SKE  L+ S+L ++KLEE+ISS  LES CEIES+K+D+ ALEQ   
Sbjct: 141 MSKSEHLLLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALEQALF 200

Query: 188 EAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQ 247
           +A K+ +E++QEK ++  +I+E + ++Q ++E ++ ++K+N++L+EK  + E + + F Q
Sbjct: 201 DAMKIQEESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIKDFFQ 260

Query: 248 KIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEK 307
             +E +E ED + L+     +EL     VS E   C   F A++ KL   L  + NL +K
Sbjct: 261 STKERLESEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLE--LSQNVNLIDK 315

Query: 308 IKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRAC 367
           ++GM  QI ++E +VKQLKEEL+ EK KAKEEAEDL QEMAELRY+MT LL+EE  RR C
Sbjct: 316 VEGMGKQIHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERNRRVC 375

Query: 368 IEQASLQRIAELETQIEKGQNKFVATGRHLPI 399
           IEQASLQRI+ELE QI++   K  A+   LP+
Sbjct: 376 IEQASLQRISELEAQIKRDVKK-PASNEMLPL 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222424375|dbj|BAH20143.1| AT5G07890 [Arabidopsis thaliana]

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 197/392 (50%), Positives = 277/392 (70%), Gaps = 6/392 (1%)

Query: 8   DGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHI 67
           D E+ FDVE+LLQI T  R+LRK+KD LRESQ  S +L++RLELH KSLSE+  ED   I
Sbjct: 21  DCENSFDVEDLLQIGTTRRKLRKQKDLLRESQPHSIELVRRLELHTKSLSESRLEDTARI 80

Query: 68  QKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELR 127
           Q +E+EL+NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L +EL 
Sbjct: 81  QMMEKELLNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLRDELC 140

Query: 128 RSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCV 187
            S SE LLL++EL+SKE  L+ S+L ++KLEE+ISS  LES CEIES+K+D+ ALEQ   
Sbjct: 141 MSKSEHLLLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALEQALF 200

Query: 188 EAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQ 247
           +A K+ +E++QEK ++  +I+E + ++Q ++E ++ ++K+N++L+EK  + E + + F Q
Sbjct: 201 DAMKIQEESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIKDFFQ 260

Query: 248 KIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEK 307
             +E +E ED + L+     +EL     VS E   C   F A++ KL   L  + NL +K
Sbjct: 261 STKERLESEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLE--LSQNVNLIDK 315

Query: 308 IKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRAC 367
           ++GM  QI ++E +VKQLKEEL+ EK KAKEEAEDL QEMAEL Y+MT LL+EE  RR C
Sbjct: 316 VEGMGKQIHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELGYKMTCLLDEERNRRVC 375

Query: 368 IEQASLQRIAELETQIEKGQNKFVATGRHLPI 399
           IEQASLQRI+ELE QI++   K  A+   LP+
Sbjct: 376 IEQASLQRISELEAQIKRDVKK-PASNEMLPL 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135329|ref|XP_002322042.1| predicted protein [Populus trichocarpa] gi|222869038|gb|EEF06169.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/294 (60%), Positives = 219/294 (74%), Gaps = 11/294 (3%)

Query: 112 MEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCE 171
           ME LQ   GQL EEL+R DSE LLL++EL+SKE  L+ SAL I KLEESISS  L+SQCE
Sbjct: 1   MEHLQANNGQLREELKRCDSEHLLLLQELESKEIELQESALCIGKLEESISSLTLDSQCE 60

Query: 172 IESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL 231
           IES+K+DMIALEQ C +AKK  +E +QE ARMN LIKELE +  +++E IEC++KEN EL
Sbjct: 61  IESMKLDMIALEQACFKAKKTQEETIQENARMNGLIKELEFQILEAKETIECVEKENIEL 120

Query: 232 KEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALL 291
           ++KL + + N ++F Q+IEEW+E +D  QL+ QS  SE+E    +SKE     +  G   
Sbjct: 121 RDKLVTSDVNSKLFLQQIEEWLENKDTSQLNTQSCSSEIEHQSNMSKEM---REALGPCF 177

Query: 292 SKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELR 351
           SKLA +LG ++NLKE ++ MS QI +YE+LVKQLK+ELR EK KAKEEA+DLAQEMAELR
Sbjct: 178 SKLATLLGSESNLKEWMESMSHQIRKYEVLVKQLKDELREEKSKAKEEADDLAQEMAELR 237

Query: 352 YQMTSLLEEECKRRACIEQASLQRIAELETQ--------IEKGQNKFVATGRHL 397
           YQMT LLEEECKRRACIEQASLQRI+ELE Q        IE+ + KF A   HL
Sbjct: 238 YQMTGLLEEECKRRACIEQASLQRISELEAQVFLVFPSKIERERRKFFAAVGHL 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2142858	409	AT5G07890 "AT5G07890" [Arabido	0.977	0.953	0.434	5.1e-74
DICTYBASE|DDB_G0276103	1503	enlA "enlazin" [Dictyostelium	0.606	0.161	0.213	1.1e-06
UNIPROTKB|F1NWT9	1732	LOC100858793 "Uncharacterized	0.897	0.206	0.209	6.2e-06
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.654	0.254	0.202	7.1e-06
UNIPROTKB|G3MXG3	1799	CCDC88A "Uncharacterized prote	0.899	0.199	0.201	2.3e-05
UNIPROTKB|P30622	1438	CLIP1 "CAP-Gly domain-containi	0.503	0.139	0.227	2.9e-05
FB|FBgn0027287	1398	Gmap "Golgi microtubule-associ	0.626	0.178	0.221	3.2e-05
UNIPROTKB|O42184	1433	CLIP1 "CAP-Gly domain-containi	0.488	0.136	0.251	3.8e-05
TAIR|locus:504955294	1221	AT4G27595 "AT4G27595" [Arabido	0.731	0.239	0.242	4.1e-05
ZFIN|ZDB-GENE-040910-6	1000	sycp1 "synaptonemal complex pr	0.453	0.181	0.245	4.1e-05

TAIR|locus:2142858 AT5G07890 "AT5G07890" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 172/396 (43%), Positives = 240/396 (60%)

Query:     4 SSRSDGESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNED 63
             SSRSD E+ FDVE+LLQI T  RELRK+KD LRESQ  S +L++RLELH KSLSE+  ED
Sbjct:    17 SSRSDCENSFDVEDLLQIGTTRRELRKQKDLLRESQPHSIELVRRLELHTKSLSESRLED 76

Query:    64 KKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLE 123
                IQ +E+EL+NC +EIDYL+DQL  R++EV  L+EH+H LE KL +   L+++V  L 
Sbjct:    77 TARIQMMEKELLNCYKEIDYLRDQLIFRSKEVNYLNEHLHDLEFKLAESRNLEEEVNSLR 136

Query:   124 EELRRSDSECLLLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALE 183
             +EL  S SE LLL++EL+SKE  L+ S+L                 CEIES+K+D+ ALE
Sbjct:   137 DELCMSKSEHLLLLQELESKEIELQCSSLTLEKLEETISSLTLESLCEIESMKLDITALE 196

Query:   184 QTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXDSYETNGR 243
             Q   +A K+ +E++QEK ++  +I+E + ++Q ++E +               + E + +
Sbjct:   197 QALFDAMKIQEESIQEKDQLKGIIEESQFQSQRAKENVKYIEKQNEDLREKFTASEKSIK 256

Query:   244 VFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDAN 303
              F Q  +E +E ED + L+     +EL     VS E   C   F A++ KL L    + N
Sbjct:   257 DFFQSTKERLESEDEQPLNAMCFFAELSHVLPVSNEVRNC---FDAIMKKLEL--SQNVN 311

Query:   304 LKEKIKGMSLQICEYELLVKQXXXXXXXXXXXXXXXXXXXXQEMAELRYQMTSLLEEECK 363
             L +K++GM  QI ++E +VKQ                    QEMAELRY+MT LL+EE  
Sbjct:   312 LIDKVEGMGKQIHQHEDVVKQLKEELKQEKLKAKEEAEDLTQEMAELRYKMTCLLDEERN 371

Query:   364 RRACIEQASLQRIAELETQIEKGQNKFVATGRHLPI 399
             RR CIEQASLQRI+ELE QI++   K  A+   LP+
Sbjct:   372 RRVCIEQASLQRISELEAQIKRDVKK-PASNEMLPL 406

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

DICTYBASE|DDB_G0276103 enlA "enlazin" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 53/248 (21%), Positives = 109/248 (43%)

Query:    29 RKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQL 88
             R+E++  R  + +   L+   E   + L E   ED + IQ+ +  L+   QE    Q QL
Sbjct:   412 RQEQERRRIEEEEMVKLMIEEEERRRKLEEKRQEDLRKIQEEQELLVKQQQEFIAKQQQL 471

Query:    89 NARNE-EVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERL 147
                 + ++    E    LE  ++ ME+ Q++  +++EE  R + E L L +++Q +EE+L
Sbjct:   472 ELEKQRQLQDQLEEDRRLEELMLQMEMDQEERIKVKEEQERQEQEKLELAKKMQEEEEKL 531

Query:   148 RNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLI 207
             +                    +  +E  +I+   LE   +E  ++ KE  + K       
Sbjct:   532 KEEQERIRLEQERVEKERQEEEKRMELERIEEERLEAIRIEKVRIEKEERERKEEEER-- 589

Query:   208 KELEVRTQDSQEIIXXXXXXXXXXXXXXDSYETNGRVFCQ---KIEEWMEKEDRKQLDIQ 264
             KE E + Q+ +E I                 +   R+  Q   ++E+ + +++R +L+ +
Sbjct:   590 KEKERKRQEEEERIKKEQEEKIRQFEEEKKKQEELRLIEQERIRVEQELIRKERLELEEK 649

Query:   265 SLVSELER 272
               + ++E+
Sbjct:   650 QRIEQIEK 657

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0000916 "actomyosin contractile ring contraction" evidence=IGI

GO:0000910 "cytokinesis" evidence=IGI

GO:0051015 "actin filament binding" evidence=ISS

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1NWT9 LOC100858793 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 82/391 (20%), Positives = 157/391 (40%)

Query:    16 EELLQIETRCRELRK---------EKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKH 66
             E  L ++++C EL K         E+ T+  +Q Q   +I  L+   + LS   ++ ++ 
Sbjct:  1326 ERDLTLKSQCSELEKFRKQVSDKIEESTVLNNQLQLL-IISDLQNQIQILSSETSQLRQT 1384

Query:    67 IQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEEL 126
             +Q+ E E    +QE+  L+D+    +     LSE++  +      +  L +K  QL + +
Sbjct:  1385 MQEKENECKRQAQELKLLKDKSEESDILRVQLSENMEIISDLQCQLRNLSEKAAQLNDSI 1444

Query:   127 RRSDSECLLLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALEQTC 186
              + D +    +E L S+ E+L+   +                +  I      +   E + 
Sbjct:  1445 TQKDKQ----LELLTSEAEQLKKQVVELEEVKVNLQKEVQHQKDVIVEKDQSLSESESSF 1500

Query:   187 VEAK---KVHKENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXD-SYETNG 242
             +E K   K  KE  QE     +LI +L+ + +  +E +              +  +E+  
Sbjct:  1501 IENKTLLKALKEKAQEDEEKVNLISQLQSQMKTEKEKLQMQVSAKGEELSKLELKFESLE 1560

Query:   243 RVFCQKIEEWMEKEDRKQLDIQSLVSELE--RNFTVSKETCFCG--KVFGALLSKLALVL 298
             +   +   +W+ K DR  L+I++L  +L    N   SK++      K       ++   L
Sbjct:  1561 QSLLESENKWVTKLDRATLEIKNLTEQLSCLENEMKSKDSKIQSLQKELDLTKEEITQSL 1620

Query:   299 GPDANLKEKIKGMSLQICEYELLVKQXXXXXXXXXXXXXXXXXXXXQEMAELRYQMTSLL 358
              P  + KEK    + Q  +++L   Q                       A+L+ +   L 
Sbjct:  1621 SPLLSSKEK----NAQTSDFQL---QLTDEMGRKVTGKDTELEELRNSYAKLQGETEMLK 1673

Query:   359 EEEC-KRRACIEQASLQRIAELETQIEKGQN 388
             EEE  K    + +A+L    +L+ Q+E  QN
Sbjct:  1674 EEEDHKNNITVTKAAL---GDLQIQMEVYQN 1701

GO:0005794 "Golgi apparatus" evidence=IEA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 138 (53.6 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 56/277 (20%), Positives = 122/277 (44%)

Query:     4 SSRSDGESVFDVEELLQIETRCRELRKEKDTL--RESQSQSFDL-IKRLELHAKSLSEAH 60
             S  SD +SV D     Q+ ++ +EL+  KD L  ++ Q  + D  IK +E   +S+ +  
Sbjct:   673 SIESDLQSVKD-----QLSSKDQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQL 727

Query:    61 NEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQD-KV 119
             +   + +Q  + +L +  QE+   +DQL+ +++E+ S  + + S +    D    +D ++
Sbjct:   728 SSKDQELQSTKDQLSSKDQELQSTKDQLSTKDQELQSAKDQL-SCQSSTTDQLSAKDTEL 786

Query:   120 GQLEEELRRSDSECLLLMEELQSKEERLRNSALHXXXXXXXXXXXX---XXXQCEIESLK 176
                +++L   DSE   + ++L +K+  L++S                       +++S+K
Sbjct:   787 QSTKDQLSSKDSELQSIKDQLSTKDSELQSSKDQLSSKDSELQSIKDQLSSKDSDLQSVK 846

Query:   177 IDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXD 236
              D ++ + + +++ K    +  ++  + S+  EL  + Q+ Q+I                
Sbjct:   847 -DQLSSKDSDLQSTKDQLSSKDQE--LQSVKDELTSKDQELQQITSKQSEQDSKVSQIQQ 903

Query:   237 SYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERN 273
               E     F     E   + D+ +  IQ L + +  N
Sbjct:   904 DLENKNAEFLSVTFEKQTEIDQLKTQIQDLNNIINNN 940

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G3MXG3 CCDC88A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 78/388 (20%), Positives = 160/388 (41%)

Query:    17 ELLQIETRCRELRKEKDTLR---ESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERE 73
             ++ Q++   +EL  EK+ L+   E    SF   +RLE+  + L +  N      Q+L++ 
Sbjct:   719 KMAQLQLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGL-DTEN------QRLQKA 771

Query:    74 LMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSEC 133
             L N +++I  L+ +L     E  +L +++  L++    +E L+ +   LE+E  + + + 
Sbjct:   772 LENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKD- 830

Query:   134 LLLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALEQTCVEAKKVH 193
                 ++L+ + +RLR  A                 + E ++L  ++   +++C+  K++ 
Sbjct:   831 ---KKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKTLFKEIGIYKESCIRLKELE 887

Query:   194 KENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXDSYETNGRVFCQKIEEWM 253
             KEN +   R    IK L    +D                      E  G    + + +  
Sbjct:   888 KENKELVKRATIDIKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQ 947

Query:   254 EKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSL 313
               +DR +L    L S L+++  + +E     K+  AL ++L      +  L++++K +  
Sbjct:   948 STDDRYKLLESKLESTLKKSLEIKEE-----KI-AALEARLEESTNYNQQLRQELKTVKK 1001

Query:   314 QICEYELLVKQXXXXXXXXXXXXXXXXXXXXQEMAELRYQMTSLLEE--ECKRRACIEQA 371
                 YE L ++                    +E  E   ++  + +   E +R     QA
Sbjct:  1002 N---YEALKQRQDEERMVQSSPPAAGEDKWERESQETTRELLKVKDRLIEVERNNATLQA 1058

Query:   372 SLQ----RIAELETQIEKGQNKFVATGR 395
               Q    ++ +LETQ    Q + +A  R
Sbjct:  1059 EKQALKTQLKQLETQNNNLQAQILALQR 1086

GO:0008017 "microtubule binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|P30622 CLIP1 "CAP-Gly domain-containing linker protein 1" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 48/211 (22%), Positives = 103/211 (48%)

Query:    10 ESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQK 69
             E+   V+EL  ++ +C E  K  D    SQ ++ +  K L+L A  L +A +E K  ++K
Sbjct:   737 EAEIKVKELEVLQAKCNEQTKVIDNFT-SQLKATEE-KLLDLDA--LRKASSEGKSEMKK 792

Query:    70 LERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRS 129
             L ++L    ++I +L+ + NA + +  S++  +   ELKL +++    +V Q++E L + 
Sbjct:   793 LRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEK- 851

Query:   130 DSECLLLMEEL-QSKEERL--RNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIALEQTC 186
               E  +L E+  ++ EE +  + S                    ++E L+ ++  +E   
Sbjct:   852 --ELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKF 909

Query:   187 VEAKKVHKENVQEKARMNSLIKELEVRTQDS 217
              E  +  ++ ++ K ++ + I E+   + D+
Sbjct:   910 REKDEREEQLIKAKEKLENDIAEIMKMSGDN 940

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=TAS

GO:0000776 "kinetochore" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0046872 "metal ion binding" evidence=NAS

GO:0031116 "positive regulation of microtubule polymerization" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0015631 "tubulin binding" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IMP

GO:0044354 "macropinosome" evidence=IDA

GO:0035371 "microtubule plus end" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005874 "microtubule" evidence=ISS

GO:0005768 "endosome" evidence=TAS

GO:0005882 "intermediate filament" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0027287 Gmap "Golgi microtubule-associated protein" [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
 Identities = 60/271 (22%), Positives = 122/271 (45%)

Query:    15 VEELLQIETRCRELRKEKDTLRESQSQSFDLIKR-LELHAKSLSEAHNE---DKKHIQKL 70
             + ELLQ++ +   L ++K+ +   Q+Q   +IK+ L      LSE        +  + ++
Sbjct:   762 LRELLQLQDK---LEQQKELMEVDQNQQITIIKKELAETTNQLSECQERLTVKEAQLAEI 818

Query:    71 ERELMNCSQEIDYLQDQLNARNEEV---YSLSEHVHSLELKLV----DMEILQDKVGQLE 123
             +++L   ++E   LQ+QL  + +E      L++    LE +L+     +++ Q ++ +L+
Sbjct:   819 QQQLQEVNEERTRLQEQLLTKEQESGLDSELAKRNQELEDQLLAKEQQLQLNQAELEKLQ 878

Query:   124 EELRRSDSECLLLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESL---KIDMI 180
             E LR ++ + L   E+L +KE +L++  L                Q  I+ L   K ++I
Sbjct:   879 ETLRVNEEQLLAKEEQLHAKESQLQS--LESQLQGQLAADESQQLQQTIDGLGQEKNELI 936

Query:   181 -ALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXDSYE 239
               L+Q   E  + + E +Q        +KEL    +  Q+ +               + +
Sbjct:   937 KVLQQKHQENTQYYAE-IQRLQPFEQQVKELVKEREKLQDQVGFLKEKSDILTTNLLTEQ 995

Query:   240 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSEL 270
             TN R+  Q+  E  E++     D++ L + L
Sbjct:   996 TNQRLLQQQQAESQEQQASTLRDLERLRAHL 1026

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IDA

UNIPROTKB|O42184 CLIP1 "CAP-Gly domain-containing linker protein 1" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 53/211 (25%), Positives = 97/211 (45%)

Query:    10 ESVFDVEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQK 69
             E+   V+EL  ++ +C E  K   +L +    S +  K L+L A  L +A++E K  IQK
Sbjct:   727 EAEIKVKELDVLQAKCNEQTKLIGSLTQQIRASEE--KLLDLAA--LQKANSEGKLEIQK 782

Query:    70 LERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRS 129
             L  +L    ++I       N   E+V +L++ +   E KL+D+E     V Q+++ L + 
Sbjct:   783 LSEQLQAAEKQIQ------NLETEKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEK- 835

Query:   130 DSECLLLMEELQSKEERLRNS--ALHXXXXXXXXXXXXXXXQC-EIESLKIDMIALEQTC 186
               E  LL E+  S  +   N+  A+                   E+E LK ++  +E   
Sbjct:   836 --ELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKL 893

Query:   187 VEAKKVHKENVQEKARMNSLIKELEVRTQDS 217
              E ++  ++  + K ++ + I E+   + DS
Sbjct:   894 KEREEREQQLTEAKVKLENDIAEIMKSSGDS 924

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0051010 "microtubule plus-end binding" evidence=IEA

TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 78/322 (24%), Positives = 139/322 (43%)

Query:    16 EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
             E L++ E   +    E   LRE +  S D I +L    +SL +   + +  IQ+ E EL 
Sbjct:   625 ESLVEKEDELKNTAAENRKLREMEVSSIDKIDQLSKVKESLVDKETKLQNIIQEAE-ELR 683

Query:    76 NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
                +EIDYL+     + EE+ +  E +   E KL  +  +Q+      EELRR +  CL 
Sbjct:   684 --VKEIDYLK-----KIEELSAAKESLVEKETKL--LSTVQEA-----EELRRRELACLK 729

Query:   136 LMEELQSKEERL--RNSALHXXXXXXXXXXXXXXXQC-EIESLKIDMIALEQTCVEAKKV 192
              +EEL +  ERL  + + L                   +IE L +    L +   + + V
Sbjct:   730 KIEELSAVNERLVDKETKLQSSIQEVEVLKEREAENIKQIEELSLSNERLVEKEAKLQTV 789

Query:   193 HKENVQEKARMNSLIKELEVRTQDSQEIIXXXXXXXXXXXXXXDSYETNGRVFCQKIEEW 252
              +EN + + + ++  K++E  ++   EI               +        + +KIEE 
Sbjct:   790 VQENEELREKESAYQKKIEELSK-VDEIFADREAKLQSSTQENEELREREVAYLKKIEEL 848

Query:   253 MEKEDR---KQLDIQSLVSELE----RNFTVSKETCFCGKVFGALL---SKLALVLGPDA 302
              + ++    K+ ++  +V E+E    ++    K+      +  +LL   S+L  V+  + 
Sbjct:   849 AKLQENLLDKENELHDMVLEIEDLKAKDSLAEKKIEELSNLNKSLLVKESELQDVVFENE 908

Query:   303 NLKEKIKGMSLQICEYELLVKQ 324
              LK K + +SL+  E    VKQ
Sbjct:   909 KLKSK-EALSLKTTEELSDVKQ 929

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040910-6 sycp1 "synaptonemal complex protein 1" [Danio rerio (taxid:7955)]

 Score = 131 (51.2 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 49/200 (24%), Positives = 103/200 (51%)

Query:    16 EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSL-SEAHNE-DKKHIQKLERE 73
             E+  +++ +  +L+ +KDT+++ Q++S  L K++ L  + + S+A+ E +K  ++KLERE
Sbjct:   536 EKNKELKLKLNDLQTQKDTIQK-QAESGALEKKV-LQCQLMESKANAEREKTEVEKLERE 593

Query:    74 LMNCSQEIDYLQDQLNARNEEVYSLSEHVHSL------ELKLVDMEI--LQDKVGQLEEE 125
                  +++D L  ++  ++EE  ++ E +         EL + D +I  L  K+  L+ +
Sbjct:   594 KRQLQEQVDILSAKITGQDEESRNVQEQLRESGKGAKKELLMKDKQIKALDTKLTNLKTK 653

Query:   126 LR---RSDSECLLLMEELQSKEERLRNSALHXXXXXXXXXXXXXXXQCEIESLKIDMIAL 182
             L    ++  ECL  ++EL+   +R++    H                 E + L +++  L
Sbjct:   654 LETKTKAHEECLKEVKELKEDLDRVKKH--HNEELQKIRSDLHEKSTSEAQ-LDLEVHKL 710

Query:   183 EQTCVEAKKVHKENVQEKAR 202
             +QT  EA K +K+  + K +
Sbjct:   711 KQTATEALK-NKDETEIKCQ 729

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0007130 "synaptonemal complex assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016267001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (405 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PLN02939	977	PLN02939, PLN02939, transferase, transferring glyc	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 83/341 (24%), Positives = 162/341 (47%), Gaps = 27/341 (7%)

Query: 63  DKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDM----EILQDK 118
           +K+     +REL    +E+  L+ QL    EE+ SL   + SLE  L ++    E L+ +
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 119 VGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEE----------SISSSALES 168
           + +L+ EL   + E   L   L+  EE L      +++L+E          S+  +  + 
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL 777

Query: 169 QCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKEN 228
           + EIE L+    AL++   E ++  +E  +    +   ++ LE R +  ++ IE L++E 
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 229 KELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFG 288
           +EL+EKLD  E       +++EE  E+ +  + + + L  EL+      +E         
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE--------- 888

Query: 289 ALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMA 348
            L  +L  +    A LKE+I+ +  ++ E E  +++L+ EL   + + +EE ED  +   
Sbjct: 889 -LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETEL 947

Query: 349 ELRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQNK 389
           E   +    LEEE +    +   +++   E+E + E+ +++
Sbjct: 948 E---REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQ 985

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 57/259 (22%), Positives = 122/259 (47%), Gaps = 2/259 (0%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
           + L ++  +  EL ++ + L+   +   + +++L+   + L E   E ++ +++L+  L 
Sbjct: 702 DLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE 761

Query: 76  NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
              +E++ L++ L    EE+  L E   +L+ +L ++E   ++  +  + L R       
Sbjct: 762 ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQ 821

Query: 136 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 195
             E L+ + E L      +++  + +     E + E+E LK ++  LE    E +   KE
Sbjct: 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 196 NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEW--M 253
             +EK  +   ++ELE    + +E IE L +  +EL+ KL+  E       +++EE    
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Query: 254 EKEDRKQLDIQSLVSELER 272
             E   + +I+ L  E+E 
Sbjct: 942 TLETELEREIERLEEEIEA 960

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 52/256 (20%), Positives = 108/256 (42%), Gaps = 14/256 (5%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
           E++ ++E +  EL K    LR+   +  + +++L    + LS   +  +K + +LE E+ 
Sbjct: 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743

Query: 76  NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
              + I  L  +L     E+  L E +   E +L + E    ++ +LE ++ +   E   
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE---AEIEELEAQIEQLKEELKA 800

Query: 136 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 195
           L E L      L         L E            +ESL+  + A E+   + ++  +E
Sbjct: 801 LREALDELRAELTLLNEEAANLRE-----------RLESLERRIAATERRLEDLEEQIEE 849

Query: 196 NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK 255
             ++   + + I+ELE   ++ +  +E L  E   L+E L    +      +++ E   K
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909

Query: 256 EDRKQLDIQSLVSELE 271
               + +++ L  +L 
Sbjct: 910 RSELRRELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 50/230 (21%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
           E+L ++     EL +E + L++      + I RLE   + L E     ++ +++LE +L 
Sbjct: 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326

Query: 76  NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKL----VDMEILQDKVGQLEEELRRSDS 131
               ++D L ++L    E++  L E + SLE +L     ++E L+ ++ +LEE+L    S
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

Query: 132 ECLLLMEELQSKEERLRNSALHIKKLEESISSSALE-SQCEIESLKIDMIALEQTCVEAK 190
           +   L  ++ S    +      +++LE+       E  +   +  + ++  L+    E +
Sbjct: 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

Query: 191 KVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYET 240
           +  +E  +E  R+   ++EL    +++++ ++  ++E  +L+ +LDS E 
Sbjct: 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 57/248 (22%), Positives = 114/248 (45%), Gaps = 20/248 (8%)

Query: 26  RELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQ 85
           R +    D L +  S +   I  +E   + L +   + K+ +++LE +L +  QEI+ ++
Sbjct: 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757

Query: 86  DQLNARNEEVYSLSEHVHSLELKLVDME--ILQDKVGQLEEELRRSDSECLLLMEELQSK 143
            +L      +  L E +H LE  L D+E  +   ++ +++ EL + + E   +   L+  
Sbjct: 758 SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREI 817

Query: 144 EERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARM 203
           E++L    L  + LE+           EI+ L+   I L++     +K  +    +K  +
Sbjct: 818 EQKLNRLTLEKEYLEK-----------EIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866

Query: 204 NSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDI 263
              ++ELE   +D       L+    +LK++ D  E   R   +KIEE   + ++K+  +
Sbjct: 867 EEELEELEAALRD-------LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

Query: 264 QSLVSELE 271
             L ++LE
Sbjct: 920 SELKAKLE 927

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 70/361 (19%), Positives = 156/361 (43%), Gaps = 43/361 (11%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSF---DLIKRL-ELHAKSLSEAHNEDKKHIQKLE 71
           E + +++    E R++ + LR  + ++     L+K   E     L +     ++  + +E
Sbjct: 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE 243

Query: 72  RELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDS 131
           R+L +  +E++ L ++++   + +  + + +  L  K+ D+   +++  +++E++   ++
Sbjct: 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEA 301

Query: 132 ECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 191
           E   L   +  KE  L ++   + KLE            EI+ L  ++  LE+  +E ++
Sbjct: 302 EIASLERSIAEKERELEDAEERLAKLEA-----------EIDKLLAEIEELERE-IEEER 349

Query: 192 VHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEE 251
             ++ + E+        EL+   +D +  +E +DKE  E +++L  Y        ++I E
Sbjct: 350 KRRDKLTEE------YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 252 WMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGM 311
              + DR Q ++Q L  EL               +  A+    A +   +   ++K   +
Sbjct: 404 LKRELDRLQEELQRLSEELAD-------------LNAAIAGIEAKINELEEEKEDKALEI 450

Query: 312 SLQICEYELLVKQLKEE------LRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRR 365
             Q  + E L   L +       L+ E  + ++E   L +E+AE   Q  +  E     R
Sbjct: 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510

Query: 366 A 366
           A
Sbjct: 511 A 511

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 4/240 (1%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
           EEL ++E    EL++E +   +   +    ++ L    + L E   E K+ I++LE E+ 
Sbjct: 246 EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEIS 305

Query: 76  NCSQEIDYLQDQLNARNEEVYSLSEHVHS----LELKLVDMEILQDKVGQLEEELRRSDS 131
              + ++ L+++L    E +  L E + +    LE +   +E L+  + +LEE     + 
Sbjct: 306 LLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE 365

Query: 132 ECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKK 191
           +   L+EEL+   E LR     ++     I +   E + EIESL+  +  L +   + K+
Sbjct: 366 KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425

Query: 192 VHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEE 251
             KE   E   + + ++EL    ++ +E +E L    KEL+ +L   +   +   +++  
Sbjct: 426 ELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485

Length = 1163

>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 59/256 (23%), Positives = 112/256 (43%), Gaps = 22/256 (8%)

Query: 105 LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEE------LQSKEERLRNSALHIKKLE 158
           LE  L + E LQ K+  LE  L  +D+   L  +E      L+ + E+LRN  L     E
Sbjct: 158 LEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATE 217

Query: 159 ESISSSALES----QCEIESLKIDMIALEQTCVEAKKVHKENV---QEKARMNSLIKELE 211
                S  +     + E   LK D+  L+   +E  +  +      +E++ +++ ++ELE
Sbjct: 218 GLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELE 277

Query: 212 VRTQDSQEIIECLDKENKE-LKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSEL 270
            +   +QE +  L     +   EK+++ +        ++E+     D+ Q D++  V +L
Sbjct: 278 SKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQ-DLRDKVDKL 336

Query: 271 ERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELR 330
           E +   +  + F       L  KL L       L+E+++    +I  Y  L ++  +E +
Sbjct: 337 EASLKEANVSKFSSYKVELLQQKLKL-------LEERLQASDHEIHSYIQLYQESIKEFQ 389

Query: 331 AEKFKAKEEAEDLAQE 346
               K KEE++  + E
Sbjct: 390 DTLSKLKEESKKRSLE 405

Length = 977

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 16  EELLQIETRCRELRKEKDTLRES-------QSQSFDLIKRLELHAKSLSEAHNEDKKHIQ 68
           EEL  +     ELR E   L E               I   E   + L E   E  + I+
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 69  KLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRR 128
            L  E+    + I+ L+ +L A   E  SL E +  L     ++E L +++ +LE +   
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRS---ELEELSEELRELESKRSE 912

Query: 129 SDSECLLLMEELQSKEERL 147
              E   L E+L   E RL
Sbjct: 913 LRRELEELREKLAQLELRL 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 59/259 (22%), Positives = 119/259 (45%), Gaps = 13/259 (5%)

Query: 16   EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
            E L ++E     L +    L+E   +  +  + L+   + L E   E ++ +  LEREL 
Sbjct: 758  ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Query: 76   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
            +  Q  + L+ ++    EE+  L E +  LE +L   E L+ ++ +L+EEL   ++E   
Sbjct: 818  SLEQRRERLEQEIEELEEEIEELEEKLDELEEEL---EELEKELEELKEELEELEAE--- 871

Query: 136  LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESL--KIDMIALEQTCVEAKKVH 193
              EEL+ + + L      +++    + S   E + EIE L  +++ +  +   +E +   
Sbjct: 872  -KEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930

Query: 194  KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 253
             E   E+   ++L  ELE   +  +E IE L   N    E+ +  E   R   ++++   
Sbjct: 931  LEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE--EVEERY--EELKSQR 986

Query: 254  EKEDRKQLDIQSLVSELER 272
            E  +  +  +  ++ EL++
Sbjct: 987  EDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 62/272 (22%), Positives = 132/272 (48%), Gaps = 6/272 (2%)

Query: 121 QLEEELRRSDSECLLL-MEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDM 179
           +L+ ELR  +   L+L +EEL+ + E L+      ++  E +++   E + ++E L++++
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276

Query: 180 IALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 239
             LE+   E +K       E +R+    + L  R  + +  +E L+ + +EL+ KLD   
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336

Query: 240 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLG 299
                  +K+EE  E+ +  + +++ L +ELE       E     +    L SK+A +  
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELE--EQLETLRSKVAQLEL 393

Query: 300 PDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKE-EAEDLAQEMAELRYQMTSLL 358
             A+L  +I+ +  ++   E   ++L++E+     K +E E ++L  E+ EL  ++  L 
Sbjct: 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453

Query: 359 EEECKRRACIEQASLQRIAELETQIEKGQNKF 390
           EE  +    +E+   + + E E  ++  + + 
Sbjct: 454 EELERLEEALEELR-EELEEAEQALDAAEREL 484

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 60/269 (22%), Positives = 129/269 (47%), Gaps = 11/269 (4%)

Query: 121 QLEEELRRSDSECLLL-MEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDM 179
           +L+ ELR  +   LL  ++EL+ + E L      +++  E +     E++ EIE LK ++
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276

Query: 180 IALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYE 239
             L +   E ++   E  +E   +   I  L  R ++ +  +E L++  +ELKEK+++ +
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 240 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLG 299
                    +EE  +     +   + L  +L       +E       F AL  +LA +  
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL------FEALREELAELEA 390

Query: 300 PDANLKEKIKGMSLQICEYELLVKQLK---EELRAEKFKAKEEAEDLAQEMAELRYQMTS 356
             A ++ +++ +  +I   E  +++L    E+L+ E  + + E E+L  E+ EL  ++  
Sbjct: 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 357 LLEEECKRRACIEQASLQRIAELETQIEK 385
           L E+  + R  +++   + +AEL+ ++++
Sbjct: 451 LEEQLEELRDRLKELE-RELAELQEELQR 478

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 57/256 (22%), Positives = 116/256 (45%), Gaps = 9/256 (3%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
           EEL + E    EL  E   L E   +    +  LE   + L +        I +LE++  
Sbjct: 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305

Query: 76  NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
              + +  L+ QL     +   L E    L+    ++  L++K+ +L+EEL         
Sbjct: 306 ILRERLANLERQLEELEAQ---LEELESKLDELAEELAELEEKLEELKEEL----ESLEA 358

Query: 136 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 195
            +EEL+++ E L +    +++  E++ S   + + +I SL  ++  LE      +   + 
Sbjct: 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

Query: 196 NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEK 255
             QE   +   ++E E+  ++ Q  +E L++E +EL+E+L+  E       +++EE  + 
Sbjct: 419 LQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476

Query: 256 EDRKQLDIQSLVSELE 271
            D  + ++  L + L+
Sbjct: 477 LDAAERELAQLQARLD 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 21/184 (11%)

Query: 51  LHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHS-LELKL 109
           +  K L  A    K+ I++ ++E     +E       L    EEV+ L   +   L+ + 
Sbjct: 22  IAEKKLGSAEELAKRIIEEAKKEAETLKKEA------LLEAKEEVHKLRAELERELKERR 75

Query: 110 VDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQ 169
            +++ L+ ++ Q EE L R         E L+ KE+ L N   ++ + EE +     E +
Sbjct: 76  NELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR 135

Query: 170 CEIESLKIDMIALEQTCVEAKKVHKENVQEKAR--MNSLIKELEVRTQDSQEIIECLDKE 227
            E+E +      L Q   EAK++  E V+E+AR     LIKE+E      +E  E  DK+
Sbjct: 136 EELERIS----GLTQE--EAKEILLEEVEEEARHEAAKLIKEIE------EEAKEEADKK 183

Query: 228 NKEL 231
            KE+
Sbjct: 184 AKEI 187

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.94
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.05
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.39
PRK02224	880	chromosome segregation protein; Provisional	96.36
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.99
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.54
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	94.59
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.49
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.19
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.93
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.82
PHA02562	562	46 endonuclease subunit; Provisional	93.67
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	92.91
PRK03918	880	chromosome segregation protein; Provisional	92.82
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.6
PRK02224	880	chromosome segregation protein; Provisional	92.49
PRK11637	428	AmiB activator; Provisional	92.25
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.8
PRK09039	343	hypothetical protein; Validated	85.11
smart00338	65	BRLZ basic region leucin zipper.	84.82
PHA02562	562	46 endonuclease subunit; Provisional	84.8
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	83.04
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	81.25

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.94  E-value=0.04  Score=57.79  Aligned_cols=96  Identities=20%  Similarity=0.312  Sum_probs=61.6

Q ss_pred             hHHHHHhHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhh
Q 015871           15 VEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEE   94 (399)
Q Consensus        15 ~eellqi~trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~E   94 (399)
                      ..++..+..+...+..+.+.++..-...-.-+..+.-....+......-...+..++.++-++..++.-++.++..-..+
T Consensus       673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~  752 (1164)
T TIGR02169       673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE  752 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888877776555444445555444444444444455556667777777777777777777666666


Q ss_pred             hhhhhhhhhhhhhhhc
Q 015871           95 VYSLSEHVHSLELKLV  110 (399)
Q Consensus        95 vn~l~EHih~LElKL~  110 (399)
                      +..+...+..++-++.
T Consensus       753 ~~~~~~el~~l~~~i~  768 (1164)
T TIGR02169       753 IENVKSELKELEARIE  768 (1164)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666555554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.05  E-value=0.53  Score=49.18  Aligned_cols=19  Identities=16%  Similarity=0.274  Sum_probs=13.5

Q ss_pred             chHHHHHhHHHHHhhHHHH
Q 015871          303 NLKEKIKGMSLQICEYELL  321 (399)
Q Consensus       303 ~lk~kme~Ms~qi~eyE~L  321 (399)
                      .|+..++.|...|.+|+.+
T Consensus       969 ~l~~~i~~lg~aiee~~~~  987 (1179)
T TIGR02168       969 EARRRLKRLENKIKELGPV  987 (1179)
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            4567777777788888754

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.47  E-value=2  Score=47.82  Aligned_cols=167  Identities=29%  Similarity=0.417  Sum_probs=104.4

Q ss_pred             HHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhh-------ccc----cchHHHHHHHHHHHhhccchhHH
Q 015871           67 IQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKL-------VDM----EILQDKVGQLEEELRRSDSECLL  135 (399)
Q Consensus        67 Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL-------~~~----e~l~e~V~~l~eEL~rS~Se~~l  135 (399)
                      +..+...+-.+..+|.=|...+..-+.+++-+.+.+++++=.+       ...    ..+.+.+..++.++...+...--
T Consensus       732 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  811 (1163)
T COG1196         732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDA  811 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555544444444444444444444443333       321    23345556666666666666666


Q ss_pred             HHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 015871          136 LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQ  215 (399)
Q Consensus       136 LmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q  215 (399)
                      +-.++.+.+...+...-.|+.+++.+..    -+=.+.+++.++..++..+...+.--.+.-.+...++..+..++....
T Consensus       812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~  887 (1163)
T COG1196         812 LERELESLEQRRERLEQEIEELEEEIEE----LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKE  887 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777766652    233566788888888888888887777777777777777777777777


Q ss_pred             hHHHHHHHHHHhhHHHHHhhhh
Q 015871          216 DSQEIIECLDKENKELKEKLDS  237 (399)
Q Consensus       216 ~Aqe~i~~L~keNkeL~ekl~~  237 (399)
                      +..+.+..+.....+++.....
T Consensus       888 ~l~~~l~~~~~~~~~~~~~~~~  909 (1163)
T COG1196         888 ELEEELRELESELAELKEEIEK  909 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766666666544433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.39  E-value=1.7  Score=46.01  Aligned_cols=42  Identities=29%  Similarity=0.488  Sum_probs=27.7

Q ss_pred             HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 015871          315 ICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSL  357 (399)
Q Consensus       315 i~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAELRYQmTgl  357 (399)
                      |.+|+.+.+++ +.|..+.-...+....|.+-+..|+..+...
T Consensus       978 i~~~~~~~~~~-~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~ 1019 (1164)
T TIGR02169       978 IQEYEEVLKRL-DELKEKRAKLEEERKAILERIEEYEKKKREV 1019 (1164)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677766554 4566666677777777777788887444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=96.36  E-value=1.7  Score=45.85  Aligned_cols=32  Identities=9%  Similarity=0.195  Sum_probs=19.0

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhh
Q 015871           60 HNEDKKHIQKLERELMNCSQEIDYLQDQLNAR   91 (399)
Q Consensus        60 ~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~R   91 (399)
                      ...-+..+..+..++....+++.+++.+++.-
T Consensus       208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l  239 (880)
T PRK02224        208 LNGLESELAELDEEIERYEEQREQARETRDEA  239 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666666666666666666665433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.99  E-value=3.6  Score=45.98  Aligned_cols=148  Identities=28%  Similarity=0.373  Sum_probs=66.5

Q ss_pred             HHHHHhhhhhhhHhhHHhhhhhhhhhhhhh-------hhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhh
Q 015871           70 LERELMNCSQEIDYLQDQLNARNEEVYSLS-------EHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQS  142 (399)
Q Consensus        70 LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~-------EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~  142 (399)
                      +..++.+...+|..++++++.++.+...+.       +.+.+++-.+.+.+   .++..+..++.......=-+-+++..
T Consensus       756 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ei~~  832 (1163)
T COG1196         756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE---RRLDALERELESLEQRRERLEQEIEE  832 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555666666666655555555544       34444444443333   44444445544444433334444444


Q ss_pred             HHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 015871          143 KEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIE  222 (399)
Q Consensus       143 kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~  222 (399)
                      .+.+.......+.-|...+.++    ...+++++-.+..+....-+...--...-.+...+++.+.++...+..+...|.
T Consensus       833 l~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  908 (1163)
T COG1196         833 LEEEIEELEEKLDELEEELEEL----EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE  908 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333444444333322    234444444444444444444333333344444444444444444444443333


Q ss_pred             HH
Q 015871          223 CL  224 (399)
Q Consensus       223 ~L  224 (399)
                      .+
T Consensus       909 ~~  910 (1163)
T COG1196         909 KL  910 (1163)
T ss_pred             HH
Confidence            33

>TIGR00606 rad50 rad50

Probab=95.54  E-value=5.6  Score=44.97  Aligned_cols=248  Identities=12%  Similarity=0.175  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhh---hhhhhhhhhhhc----cccchHHHHHHHHHHHhhccchhHHHH
Q 015871           65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSL---SEHVHSLELKLV----DMEILQDKVGQLEEELRRSDSECLLLM  137 (399)
Q Consensus        65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l---~EHih~LElKL~----~~e~l~e~V~~l~eEL~rS~Se~~lLm  137 (399)
                      .-|+.++.++.....+|+=++.+..-++.+++.|   -.-+.+..+++.    ...+|++++..|.+++       =-+-
T Consensus       829 ~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el-------~~l~  901 (1311)
T TIGR00606       829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV-------QSLI  901 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            3466666666666666666687777777777777   333333333333    3333333333333333       2222


Q ss_pred             HHhhhHHHHhhhhhhhHHHHHhhhhccc-------cccccchhhhhhhHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHH
Q 015871          138 EELQSKEERLRNSALHIKKLEESISSSA-------LESQCEIESLKIDMIALEQTCVEAKKVHKENVQE-KARMNSLIKE  209 (399)
Q Consensus       138 qEle~kE~ELq~Sal~IeKLEESiSS~t-------LeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~e-k~~m~~~i~E  209 (399)
                      .++...+.++.--.-.++++......+.       =..|=++..++=++..|....=+...+-+..... -..+..-+..
T Consensus       902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~  981 (1311)
T TIGR00606       902 REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNT  981 (1311)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2222233333333333333332222211       1223345555555555555544444433332211 3334444444


Q ss_pred             HHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHH--Hhhhhhcchhhhhhhhhhhhcccccccccchhhhh
Q 015871          210 LEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEW--MEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVF  287 (399)
Q Consensus       210 lq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~--lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f  287 (399)
                      +...+.+.+.-+..+..+.+.++..+.....--+.+...+..+  ...-.........+.......     +.   +. |
T Consensus       982 ~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~-----~~---~~-~ 1052 (1311)
T TIGR00606       982 VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM-----QV---LQ-M 1052 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cH---HH-H
Confidence            4445555555555555556666555555443333333333322  111111112222222222221     00   11 1


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 015871          288 GALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRA  331 (399)
Q Consensus       288 ~~l~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELRE  331 (399)
                      ..-...|.--   -..|...--.+.-+...++.-|.+|+.+|.+
T Consensus      1053 ~~e~~~l~~~---~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606      1053 KQEHQKLEEN---IDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            1112222110   1112222334556677888888999999976

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=94.59  E-value=7.2  Score=41.09  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=6.1

Q ss_pred             HHHHhHHHHHHHHhh
Q 015871           17 ELLQIETRCRELRKE   31 (399)
Q Consensus        17 ellqi~trc~~lrke   31 (399)
                      ++-.+......++++
T Consensus       678 e~~~l~~~~~~l~~~  692 (1179)
T TIGR02168       678 EIEELEEKIEELEEK  692 (1179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.49  E-value=15  Score=44.41  Aligned_cols=198  Identities=22%  Similarity=0.301  Sum_probs=116.4

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhh
Q 015871           21 IETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSE  100 (399)
Q Consensus        21 i~trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~E  100 (399)
                      ..+.+++++.+++-||+.-...++-..-|..+   +|.+.+++-...-+++.++..|-.|++=.+--+.-|=   ..+.+
T Consensus      1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~---lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~l---q~~qe 1393 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERK---LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRL---QELEE 1393 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHH
Confidence            44557788889999998888888777766544   6777777777788888888888888877665554442   23344


Q ss_pred             hhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHH
Q 015871          101 HVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMI  180 (399)
Q Consensus       101 Hih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~  180 (399)
                      ++--+..+...+++.   -++|+.|+....+.    ++.+.+.-..|.+-....+|+=...-...-++++|++-..=+.-
T Consensus      1394 ~~e~~~~~~~~Lek~---k~~l~~el~d~~~d----~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r 1466 (1930)
T KOG0161|consen 1394 QIEAANAKNASLEKA---KNRLQQELEDLQLD----LERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELR 1466 (1930)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444443332   23333333322211    12222222222222222333322233334566777776666655


Q ss_pred             HHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHH
Q 015871          181 ALEQTCVE-------AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKEL  231 (399)
Q Consensus       181 aLEQ~lfd-------A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL  231 (399)
                      .++..+|-       +..-.+..-.+|..|..-|.++..++.++.+.+..|++.++-+
T Consensus      1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~l 1524 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRL 1524 (1930)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554       4444455555777778888888888888888877766665544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.19  E-value=9.4  Score=40.87  Aligned_cols=28  Identities=36%  Similarity=0.461  Sum_probs=14.9

Q ss_pred             HHHhhhHHHHhhhhhhhHHHHHhhhhcc
Q 015871          137 MEELQSKEERLRNSALHIKKLEESISSS  164 (399)
Q Consensus       137 mqEle~kE~ELq~Sal~IeKLEESiSS~  164 (399)
                      -+|.+.-..++..+.-.|.+||+-|-++
T Consensus       205 ~~E~~~L~~q~~e~~~ri~~LEedi~~l  232 (546)
T PF07888_consen  205 KEERESLKEQLAEARQRIRELEEDIKTL  232 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555566666777544443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.93  E-value=5.2  Score=36.98  Aligned_cols=233  Identities=27%  Similarity=0.317  Sum_probs=152.2

Q ss_pred             HHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHH
Q 015871           66 HIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEE  145 (399)
Q Consensus        66 ~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~  145 (399)
                      .|+.|..++-.=.+.++.++..|.--+..+.....          +...|.-++..|.++|-+.....--..+-|+..+.
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~----------e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~   71 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEA----------EVASLQRRIQLLEEELERAEERLEEATEKLEEAEK   71 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            46666666666666666666665544433333222          23355667777777887777777677777777777


Q ss_pred             HhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 015871          146 RLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLD  225 (399)
Q Consensus       146 ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~  225 (399)
                      .+.-+--....||....+.  +       -|  |..||+.|=+|+....++-.--.-..+-+.-++..+..|.+-++.++
T Consensus        72 ~~de~er~~k~lE~r~~~~--e-------er--i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E  140 (237)
T PF00261_consen   72 RADESERARKVLENREQSD--E-------ER--IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAE  140 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHH--H-------HH--HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHH--H-------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777777777777432211  1       12  45789999999999998888888888888889999999999999999


Q ss_pred             HhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCCCchH
Q 015871          226 KENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLK  305 (399)
Q Consensus       226 keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d~~lk  305 (399)
                      ...++|.+.|..-..|.+.+-.+....-+.++...           ..             +..|-.+|.-+       -
T Consensus       141 ~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e-----------~~-------------i~~L~~~lkea-------E  189 (237)
T PF00261_consen  141 SKIKELEEELKSVGNNLKSLEASEEKASEREDEYE-----------EK-------------IRDLEEKLKEA-------E  189 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------------HHHHHHHHHHH-------H
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-----------HH-------------HHHHHHHHHHH-------H
Confidence            99999999998876666644333221111111100           00             11112222111       0


Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 015871          306 EKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAEL  350 (399)
Q Consensus       306 ~kme~Ms~qi~eyE~LvkQLKeELREEKLKAKEEAEDLtQEMAEL  350 (399)
                      .-.+..-+.+..++--|..|.++|...|.+-+.=..+|-+-|++|
T Consensus       190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            223344567778888899999999999988888777777777765

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.82  E-value=9.5  Score=41.94  Aligned_cols=143  Identities=24%  Similarity=0.351  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHhhhhhhhHhhH---HhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHh
Q 015871           64 KKHIQKLERELMNCSQEIDYLQ---DQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEEL  140 (399)
Q Consensus        64 k~~Iq~LEkELlNC~QEIDYLq---DQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEl  140 (399)
                      ..+|..|+.||..+-++++--+   |.|+..+.++   ++.          .+.++-+..+||+|++--+.--.-|||+.
T Consensus        33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~---~~~----------~~~~e~~~~~lr~e~ke~K~rE~rll~dy   99 (717)
T PF09730_consen   33 QQRILELENELKQLRQELSNVQAENERLSQLNQEL---RKE----------CEDLELERKRLREEIKEYKFREARLLQDY   99 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3467888888888888886554   4454444443   333          45566788999999999988888888865


Q ss_pred             hhHH---HHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhH
Q 015871          141 QSKE---ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDS  217 (399)
Q Consensus       141 e~kE---~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~A  217 (399)
                      -.-|   +-|||....           -=.||-|.|+||.++..|+=-.-    +-.-.++|-.+++.+   .+-|+.+|
T Consensus       100 selEeENislQKqvs~-----------Lk~sQvefE~~Khei~rl~Ee~~----~l~~qlee~~rLk~i---ae~qleEA  161 (717)
T PF09730_consen  100 SELEEENISLQKQVSV-----------LKQSQVEFEGLKHEIKRLEEEIE----LLNSQLEEAARLKEI---AEKQLEEA  161 (717)
T ss_pred             HHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHH
Confidence            4444   446665433           33799999999999988863221    111223444444443   46788999


Q ss_pred             HHHHHHHHHhhHHHHHhhhh
Q 015871          218 QEIIECLDKENKELKEKLDS  237 (399)
Q Consensus       218 qe~i~~L~keNkeL~ekl~~  237 (399)
                      -+++..=..+.-.||.-|+.
T Consensus       162 Lesl~~EReqk~~LrkEL~~  181 (717)
T PF09730_consen  162 LESLKSEREQKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887776

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.67  E-value=8.3  Score=38.40  Aligned_cols=81  Identities=14%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871           23 TRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV  102 (399)
Q Consensus        23 trc~~lrkek~~lr~sqsqs~eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi  102 (399)
                      .+.++++.+.+.++..-..--.-+..++-....+...   -...|+.+++++-++..+...+..|++.-..++..++.++
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~---~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i  250 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI  250 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4455666666666655554444444333333333332   2356888999999999888888888888888887777766


Q ss_pred             hhhh
Q 015871          103 HSLE  106 (399)
Q Consensus       103 h~LE  106 (399)
                      .+++
T Consensus       251 ~~~~  254 (562)
T PHA02562        251 EDPS  254 (562)
T ss_pred             ccHH
Confidence            6543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=92.91  E-value=24  Score=41.62  Aligned_cols=268  Identities=22%  Similarity=0.246  Sum_probs=147.4

Q ss_pred             hhhhhhhhhHHHHHHHhhhhhhhhhhhhhhHHH-------HHHH---HHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhh
Q 015871           35 LRESQSQSFDLIKRLELHAKSLSEAHNEDKKHI-------QKLE---RELMNCSQEIDYLQDQLNARNEEVYSLSEHVHS  104 (399)
Q Consensus        35 lr~sqsqs~eli~rleL~~~slSea~~eDk~~I-------q~LE---kELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~  104 (399)
                      |++-+.+.=++++++---+-++|+|-+.-.+-.       ++++   +||.|=.|+|.-...|=.+--..+.-+.+-|..
T Consensus      1424 l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~ 1503 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLA 1503 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            455556666677777777777777766544332       2333   588888888855555556677778888999999


Q ss_pred             hhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHH
Q 015871          105 LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQ  184 (399)
Q Consensus       105 LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ  184 (399)
                      ||++++     ++.|..|-+++.                     .++.+|...+.-++           --|-|+.--|+
T Consensus      1504 l~lp~t-----peqi~~L~~~I~---------------------e~v~sL~nVd~IL~-----------~T~~di~ra~~ 1546 (1758)
T KOG0994|consen 1504 LELPLT-----PEQIQQLTGEIQ---------------------ERVASLPNVDAILS-----------RTKGDIARAEN 1546 (1758)
T ss_pred             ccCCCC-----HHHHHHHHHHHH---------------------HHHHhcccHHHHHH-----------hhhhhHHHHHH
Confidence            999887     455555544433                     33344444443222           23667777777


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcch
Q 015871          185 TCVEAKKVHKENVQEKARMNSLIKELE---VRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQL  261 (399)
Q Consensus       185 ~lfdA~k~q~et~~ek~~m~~~i~Elq---~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l  261 (399)
                      -+-+|.+--..+-..+..|+.+++-|+   .....|+..|+..+.-..--...|.           ++.+.+..-....-
T Consensus      1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~-----------kv~~~t~~aE~~~~ 1615 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLA-----------KVQEETAAAEKLAT 1615 (1758)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            777777777777777777776655544   3444555555554443332222222           11111111111111


Q ss_pred             hhhhhhhhhhhcccccc----cccchhhhhHHHHHHHHHhhCCCCchHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 015871          262 DIQSLVSELERNFTVSK----ETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAK  337 (399)
Q Consensus       262 ~~q~~~~~l~~~~~~s~----~~~~c~~~f~~l~~kL~~~~~~d~~lk~kme~Ms~qi~eyE~LvkQLKeELREEKLKAK  337 (399)
                      +...-..+|+..  |++    -+.+-+.-  .-+.+.+-.+....   .-.++-..+++.|--++++|-+.--+.-.-|.
T Consensus      1616 ~a~q~~~eL~~~--~e~lk~~~~qns~~A--~~a~~~a~sa~~~A---~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar 1688 (1758)
T KOG0994|consen 1616 SATQQLGELETR--MEELKHKAAQNSAEA--KQAEKTAGSAKEQA---LSAEQGLEILQKYYELVDRLLEKRMEGSQAAR 1688 (1758)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHhccHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            111111111111  000    00011100  00111111000000   11234455788888899999888888888999


Q ss_pred             hHHHHHHHHHHHHHHHHhhh
Q 015871          338 EEAEDLAQEMAELRYQMTSL  357 (399)
Q Consensus       338 EEAEDLtQEMAELRYQmTgl  357 (399)
                      +-||-|-+|-+.|=||-...
T Consensus      1689 ~rAe~L~~eA~~Ll~~a~~k 1708 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEKLLGQANEK 1708 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986544

>PRK03918 chromosome segregation protein; Provisional

Probab=92.82  E-value=15  Score=38.84  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhh
Q 015871           65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHV  102 (399)
Q Consensus        65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHi  102 (399)
                      .-+..+++++-.+.+++.-|++++..-..+++.+.+..
T Consensus       200 ~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~  237 (880)
T PRK03918        200 KELEEVLREINEISSELPELREELEKLEKEVKELEELK  237 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33556777777777777777776655544444444433

>TIGR00606 rad50 rad50

Probab=92.60  E-value=22  Score=40.40  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=21.5

Q ss_pred             hhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccc
Q 015871           96 YSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDS  131 (399)
Q Consensus        96 n~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~S  131 (399)
                      +.|..+|..+.-=..++.++...|..+..++..+.+
T Consensus       785 esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~  820 (1311)
T TIGR00606       785 KVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL  820 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334455544444455666667777777777776665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=92.49  E-value=17  Score=38.70  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=16.0

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871          206 LIKELEVRTQDSQEIIECLDKENKELKEKLDS  237 (399)
Q Consensus       206 ~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~  237 (399)
                      .+.....++.++...++.|.++..+|+..+..
T Consensus       524 ~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~  555 (880)
T PRK02224        524 LIAERRETIEEKRERAEELRERAAELEAEAEE  555 (880)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555555444433

>PRK11637 AmiB activator; Provisional

Probab=92.25  E-value=13  Score=36.89  Aligned_cols=87  Identities=13%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             ccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhccchhHHHH
Q 015871          167 ESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFC  246 (399)
Q Consensus       167 eSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~se~n~r~~~  246 (399)
                      +.+=++..++-.+..+++.+-+..+-..+...+.+.++.-|..++.++.+.+.-|..++.+...+...+...+.......
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666677777777777777777777777777777777777777777777777777777777666666655555544


Q ss_pred             HHhHHHH
Q 015871          247 QKIEEWM  253 (399)
Q Consensus       247 q~~~e~l  253 (399)
                      ..+..++
T Consensus       124 ~~l~~rl  130 (428)
T PRK11637        124 RLLAAQL  130 (428)
T ss_pred             HHHHHHH
Confidence            4444444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.80  E-value=43  Score=36.61  Aligned_cols=154  Identities=29%  Similarity=0.384  Sum_probs=92.3

Q ss_pred             HHHhhhhhhhhhhhhhhHHHHHHHHHHh---hhhhhhH-hhHHhhhhhhhhhhh-----------hhhhhhhhhhhhccc
Q 015871           48 RLELHAKSLSEAHNEDKKHIQKLERELM---NCSQEID-YLQDQLNARNEEVYS-----------LSEHVHSLELKLVDM  112 (399)
Q Consensus        48 rleL~~~slSea~~eDk~~Iq~LEkELl---NC~QEID-YLqDQLn~Rn~Evn~-----------l~EHih~LElKL~~~  112 (399)
                      -|+-....|..|+..||..|+.|||=|.   -.-+.++ =|+.+=.+|-.|.-.           -+|.--.+--+.   
T Consensus       471 ~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~---  547 (697)
T PF09726_consen  471 QLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRR---  547 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHH---
Confidence            3566677899999999999999998653   3333332 122222233322100           012222222222   


Q ss_pred             cchHHHHHHHHHHHhhccchhHHHHHHhh---------hHHHHhhhhhhhH-----HHHHhhhhccccccccchhhhhhh
Q 015871          113 EILQDKVGQLEEELRRSDSECLLLMEELQ---------SKEERLRNSALHI-----KKLEESISSSALESQCEIESLKID  178 (399)
Q Consensus       113 e~l~e~V~~l~eEL~rS~Se~~lLmqEle---------~kE~ELq~Sal~I-----eKLEESiSS~tLeSQcEIESmKLD  178 (399)
                      .+|+.++..||-||+-.+..+..+-.|++         .++.|.=.++|+.     ..||.|.|.=|        -||+|
T Consensus       548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt--------riKld  619 (697)
T PF09726_consen  548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET--------RIKLD  619 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHH
Confidence            45568899999999998888888877663         2234444555544     24666665433        35555


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhh
Q 015871          179 MIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLD  236 (399)
Q Consensus       179 ~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~  236 (399)
                             ||-|                 +.+-.-|+-.|+..|..=++|+.+|+-|+.
T Consensus       620 -------Lfsa-----------------Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~  653 (697)
T PF09726_consen  620 -------LFSA-----------------LGDAKRQLEIAQGQLRKKDKEIEELKAKIA  653 (697)
T ss_pred             -------HHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3433                 455566677777778888888888887664

; GO: 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=85.11  E-value=42  Score=33.26  Aligned_cols=132  Identities=16%  Similarity=0.235  Sum_probs=83.0

Q ss_pred             hhHHhhhhhhhhhhhhhhhhhh----hhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHH
Q 015871           83 YLQDQLNARNEEVYSLSEHVHS----LELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLE  158 (399)
Q Consensus        83 YLqDQLn~Rn~Evn~l~EHih~----LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLE  158 (399)
                      ||.+|+.-+..|++.|..+|-.    |.+--....+++.+|..++..+.           -++....          .|+
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~-----------~a~~~r~----------~Le  101 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS-----------AAEAERS----------RLQ  101 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHH----------HHH
Confidence            4555566666666555555543    34555566778888888887776           2222222          233


Q ss_pred             hhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhhc
Q 015871          159 ESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSY  238 (399)
Q Consensus       159 ESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~s  238 (399)
                      ..+...    .=.--.+.--...|...|=..+..-.+.-..-.+++.-|..|+-|+...+.-|+-.+.+.++.+.++...
T Consensus       102 ~~~~~~----~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        102 ALLAEL----AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHhhh----hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211    0001233444556677787777777777777888888888888888888888888888887777777664


Q ss_pred             c
Q 015871          239 E  239 (399)
Q Consensus       239 e  239 (399)
                      .
T Consensus       178 ~  178 (343)
T PRK09039        178 G  178 (343)
T ss_pred             H
Confidence            3

>smart00338 BRLZ basic region leucin zipper

Probab=84.82  E-value=3.6  Score=31.04  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=47.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhh
Q 015871           44 DLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLS   99 (399)
Q Consensus        44 eli~rleL~~~slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~   99 (399)
                      ...+|+.-+.-|+..++..-+.||+.||.++..-..+.+-|+.+++.=..|+..|-
T Consensus         5 k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk   60 (65)
T smart00338        5 KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK   60 (65)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888999999999999999999999999999999999988877666665553

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.80  E-value=45  Score=33.34  Aligned_cols=117  Identities=15%  Similarity=0.228  Sum_probs=56.5

Q ss_pred             hhhhhhhhhhHHHHHHHHHHhhhhhhhHhhHHhhhh--------hhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHH
Q 015871           55 SLSEAHNEDKKHIQKLERELMNCSQEIDYLQDQLNA--------RNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEEL  126 (399)
Q Consensus        55 slSea~~eDk~~Iq~LEkELlNC~QEIDYLqDQLn~--------Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL  126 (399)
                      ..+......+.++..++.++-.+-.+|+.+++++..        +..-...+.++--.++--+.....+..++..+++++
T Consensus       164 ~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i  243 (562)
T PHA02562        164 VLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL  243 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666666666666666666666665541        111111111111112222233344556666666666


Q ss_pred             hhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccc
Q 015871          127 RRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCE  171 (399)
Q Consensus       127 ~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcE  171 (399)
                      ..-.++-=.+-+.|...+.++..+...+++++..+.-++-...|.
T Consensus       244 ~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp  288 (562)
T PHA02562        244 LNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP  288 (562)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            444333222334445555555556666666666655554333443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=83.04  E-value=30  Score=31.16  Aligned_cols=107  Identities=22%  Similarity=0.288  Sum_probs=58.5

Q ss_pred             cchHHHHHHHHHHHhhccchhHHHHHHhhhHHHHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhh
Q 015871          113 EILQDKVGQLEEELRRSDSECLLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKV  192 (399)
Q Consensus       113 e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~  192 (399)
                      +.|++.|..|..||-.|--....++-+.+++..+       |+.|++-|+-+|           =....|+.-|..-.+-
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e-------ie~L~~el~~lt-----------~el~~L~~EL~~l~sE   81 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAE-------IETLEEELEELT-----------SELNQLELELDTLRSE   81 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            3445555555555555544444444444433332       333443333332           2233355555555555


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871          193 HKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS  237 (399)
Q Consensus       193 q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~  237 (399)
                      -+.-.+.-..|.+-|.+|+.-.-+....|.-++.+..++.+-+.+
T Consensus        82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~  126 (140)
T PF10473_consen   82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKS  126 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666677777777777777777777777776666665554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=81.25  E-value=1.1e+02  Score=35.05  Aligned_cols=260  Identities=23%  Similarity=0.350  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHhhhhhhhHhhHHhhhhhhhhhhhhhhhhhhhhhhhccccchHHHHHHHHHHHhhccchhHHHHHHhhhHH
Q 015871           65 KHIQKLERELMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEELQSKE  144 (399)
Q Consensus        65 ~~Iq~LEkELlNC~QEIDYLqDQLn~Rn~Evn~l~EHih~LElKL~~~e~l~e~V~~l~eEL~rS~Se~~lLmqEle~kE  144 (399)
                      ..++.++.-|--|-....=+..+|...|..++-+-..+...+-   .+...+..+.+++++..+-..++      -+.++
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~------~~~~~  677 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ---ELKQAEQDLQRLKNEREQLKQEI------EEAKE  677 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHH------HHHHH
Confidence            3444555555555555555666666666666666665555443   34455666677776664433222      22233


Q ss_pred             HHhhhhhhhHHHHHhhhhccccccccchhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 015871          145 ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECL  224 (399)
Q Consensus       145 ~ELq~Sal~IeKLEESiSS~tLeSQcEIESmKLD~~aLEQ~lfdA~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L  224 (399)
                      .+.+...-.+..++.           ++..++-.+..+.+.+=  ..+.+...+.|+.+..+..++..++.....-|...
T Consensus       678 ~~~~~~~~~l~~l~~-----------~l~~~~~e~~~~~~~~~--~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~  744 (1201)
T PF12128_consen  678 ERKEQIEEQLNELEE-----------ELKQLKQELEELLEELK--EQLKELRNELKAQWQELEAELDEQIEQIKQEIAAA  744 (1201)
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444442           23333334444444432  23445556777777777777777776666666555


Q ss_pred             HHhhHHHHHhhhhccchhHHHHHHhHHHHhhhhhcchhhhhhhhhhhhcccccccccchhhhhHHHHHHHHHhhCCCCch
Q 015871          225 DKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANL  304 (399)
Q Consensus       225 ~keNkeL~ekl~~se~n~r~~~q~~~e~lE~ed~~~l~~q~~~~~l~~~~~~s~~~~~c~~~f~~l~~kL~~~~~~d~~l  304 (399)
                      ..+.++-...|.              .|+.    ..|.+++++...                ...+-..+.-.   +..|
T Consensus       745 ~~~~~~~~~~le--------------~~~~----~eL~~~GvD~~~----------------I~~l~~~i~~L---~~~l  787 (1201)
T PF12128_consen  745 KQEAKEQLKELE--------------QQYN----QELAGKGVDPER----------------IQQLKQEIEQL---EKEL  787 (1201)
T ss_pred             HHHHHHHHHHHH--------------HHHH----HHHHhCCCCHHH----------------HHHHHHHHHHH---HHHH
Confidence            444443333332              2221    113333333211                11112222110   0000


Q ss_pred             HHHHHhHHHHHhhHHHHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHH
Q 015871          305 KEKIKGMSLQICEYELLVKQL---KEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQ---ASLQRIAE  378 (399)
Q Consensus       305 k~kme~Ms~qi~eyE~LvkQL---KeELREEKLKAKEEAEDLtQEMAELRYQmTglLEEEcKRRaCIEQ---ASLQRIaE  378 (399)
                       ..++.-...+.+|+.-++..   .+.+++++-..+.+..++.++.++|+-+++....+==.+|+=+++   +.=+.+.+
T Consensus       788 -~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~  866 (1201)
T PF12128_consen  788 -KRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQ  866 (1201)
T ss_pred             -HHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34566677788888888776   567888999999999999999999999888776655555666643   33344455


Q ss_pred             HHHHHH
Q 015871          379 LETQIE  384 (399)
Q Consensus       379 LEAQi~  384 (399)
                      +++.+.
T Consensus       867 ~~~~l~  872 (1201)
T PF12128_consen  867 LEEQLR  872 (1201)
T ss_pred             HHHHHH
Confidence            555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.3 bits (193), Expect = 9e-16
 Identities = 61/344 (17%), Positives = 134/344 (38%), Gaps = 19/344 (5%)

Query: 22   ETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEI 81
            E   +   +E    +E Q ++   +K LE     L E  N  ++ +Q          +  
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 82   DYLQDQLNARNEEVYSLSEHVHSLELKLVDME----ILQDKVGQLEEELRRSDSECLLLM 137
              L  +     E ++ +   +   E +   ++     +Q ++  LEE+L   ++    L 
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 138  EELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENV 197
             E  + + +++     I  +E+  +    +   E + L+  +  L     E ++  K   
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 198  QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKED 257
            + K +  S+I ELEVR +  ++  + L+K  ++L+ +             +I E   +  
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 258  RKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQICE 317
            +K+ ++Q+ ++ LE   +               L K+  +    ++L+E ++       +
Sbjct: 1092 KKEEELQAALARLEDETSQKNN----------ALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 318  YELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEE 361
             E   + L EEL A K    E+  D      ELR       +++
Sbjct: 1142 AEKQKRDLSEELEALK-TELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 37/260 (14%), Positives = 101/260 (38%), Gaps = 11/260 (4%)

Query: 20   QIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQ 79
            ++E    E+    +   E   Q     K+++     L E   E++   QKL+ E +    
Sbjct: 924  ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983

Query: 80   EIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLMEE 139
            +I  ++D +    ++   L++    LE ++ D+     +  +  + L +  ++   ++ E
Sbjct: 984  KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043

Query: 140  LQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQE 199
            L+ + ++        +K  + +     + + E   L   +  L+    E K    +  +E
Sbjct: 1044 LEVRLKKE-------EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 200  KARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKEDRK 259
                 + +++   +  ++ + I  L+    +L+E L+S +        K E+       +
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA----RNKAEKQKRDLSEE 1152

Query: 260  QLDIQSLVSELERNFTVSKE 279
               +++ + +        +E
Sbjct: 1153 LEALKTELEDTLDTTATQQE 1172

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 33/226 (14%), Positives = 94/226 (41%)

Query: 16   EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
              + + E R ++L+ EK  +++      + ++  E   + L          I+K+E +++
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993

Query: 76   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
                + + L  +     E V  L+ ++   E K  ++  L++K   +  EL     +   
Sbjct: 994  IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK 1053

Query: 136  LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 195
              +EL+  + +L   +  + +    + +   E + ++   + ++ A      +       
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113

Query: 196  NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETN 241
             +++   + S I +L+   +  +      +K+ ++L E+L++ +T 
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 24/219 (10%)

Query: 16   EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
            +++L +E +  +L KE+  L E  S     +   E  AK+L++  N+ +  I +LE  L 
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 76   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
               +    L+        E   L E +  L+           ++ +L+ +L + + E   
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQ----------AQIAELKAQLAKKEEELQA 1099

Query: 136  LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 195
             +  L+ +  +  N+   I++LE             I  L+ D+ + +    +A+K  ++
Sbjct: 1100 ALARLEDETSQKNNALKKIRELES-----------HISDLQEDLESEKAARNKAEKQKRD 1148

Query: 196  NVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEK 234
              +E   + +L  ELE     +    E    + K+  +K
Sbjct: 1149 LSEE---LEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 41/247 (16%), Positives = 92/247 (37%), Gaps = 13/247 (5%)

Query: 18   LLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNC 77
            ++Q   R   +RK    +R++      L++   +  K            IQK  R  +  
Sbjct: 821  IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR 880

Query: 78   SQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLLLM 137
                  L+  +  +      +++     ELK + +E     V + ++     +++ + L 
Sbjct: 881  VHYHRTLKAIVYLQCCYRRMMAK----RELKKLKIE--ARSVERYKKLHIGLENKIMQLQ 934

Query: 138  EELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENV 197
             ++  + +  ++    +  LE + S+       E E L+ D+  L  +  EAK      +
Sbjct: 935  RKIDEQNKEYKSLLEKMNNLEITYST-------ETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 198  QEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWMEKED 257
              +  +  L KEL     + + I E  DK   E ++ +   +    +   + EE   +  
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047

Query: 258  RKQLDIQ 264
             +  +I 
Sbjct: 1048 DQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 9/200 (4%)

Query: 16   EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
               LQ   R    ++E   L+          K        L     + ++ I +  +E  
Sbjct: 890  IVYLQCCYRRMMAKRELKKLKIEARSVERYKKL----HIGLENKIMQLQRKIDEQNKEYK 945

Query: 76   NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSECLL 135
            +  ++++ L+   +   E+   L   V  L +   + +   ++V  L+EE+ +   E   
Sbjct: 946  SLLEKMNNLEITYSTETEK---LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002

Query: 136  LMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKE 195
               E ++ EE         ++L   +       + E E L   +    +   E  +  K+
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME--KK 1060

Query: 196  NVQEKARMNSLIKELEVRTQ 215
             V+E  ++   + +  +R Q
Sbjct: 1061 LVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 40/278 (14%), Positives = 102/278 (36%), Gaps = 34/278 (12%)

Query: 112  MEILQDKVGQLEEELRRSDSECLL--LMEELQSKEERLRNSALHIKKLEESISSSALESQ 169
             + ++D    L+  LR          ++ E +S   +        +        + +  Q
Sbjct: 835  YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

Query: 170  CEIESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENK 229
            C    +      L++  +EA+ V +   +    + + I +L+ +  +        +KE K
Sbjct: 895  CCYRRMMAKR-ELKKLKIEARSVERYK-KLHIGLENKIMQLQRKIDE-------QNKEYK 945

Query: 230  ELKEKLDSYETNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGA 289
             L EK+++ E       +K+   +E+    + + ++  + +                  +
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL-----------------S 988

Query: 290  LLSKLALVLGPDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAE 349
            L  ++A +       + + K +     +Y+   +QL  EL+ +    K E E+L + + +
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 350  LRYQMTSLLEEECKRRACIEQASLQRIAELETQIEKGQ 387
                    + E  +++   E   L+   +L  +  + Q
Sbjct: 1049 Q----AKEITETMEKKLVEETKQLE--LDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 37/259 (14%), Positives = 91/259 (35%), Gaps = 29/259 (11%)

Query: 15   VEELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLE-RE 73
            +   L        LR+ K  + +   + +          K++       ++ + K E ++
Sbjct: 849  LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK 908

Query: 74   LMNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDMEILQDKVGQLEEELRRSDSEC 133
            L   ++ ++  +        ++  L   +     +   +    +K+  LE        + 
Sbjct: 909  LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL---EKMNNLEITYSTETEKL 965

Query: 134  LLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVH 193
               +E L+  EE  +N+   +  L+E           EI  L+ ++   +    E K + 
Sbjct: 966  RSDVERLRMSEEEAKNATNRVLSLQE-----------EIAKLRKELHQTQT---EKKTIE 1011

Query: 194  KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDSYETNGRVFCQKIEEWM 253
            +   + K     L+ EL+       E    L  E +EL  ++           + +E+ +
Sbjct: 1012 EWADKYKHETEQLVSELK-------EQNTLLKTEKEELNRRIHDQAKEIT---ETMEKKL 1061

Query: 254  EKEDRK-QLDIQSLVSELE 271
             +E ++ +LD+       +
Sbjct: 1062 VEETKQLELDLNDERLRYQ 1080

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 61/387 (15%), Positives = 115/387 (29%), Gaps = 113/387 (29%)

Query: 1   MSISSRSDGESVFDVEELL--QIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSE 58
           +++ + +  E+V ++ + L  QI+            ++         ++RL L +K    
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYEN 245

Query: 59  A-----HNEDKKHIQKLERELMNC-----SQEIDYLQDQLNARNEEVYSLSEHVHSLELK 108
                 + ++ K         ++C     ++    + D L+A      SL  H  +L   
Sbjct: 246 CLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPD 301

Query: 109 LVDMEILQDKVGQLEEELRRSDSECLLLM-----EELQSKEERLRNSA-LHIKKLEESIS 162
            V   +L   +    ++L R              E ++       N   ++  KL   I 
Sbjct: 302 EV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 163 SS--ALES--------QCEI--ESLKIDMIALEQTCVEAKKVHKENVQEKARMNSLIKE- 209
           SS   LE         +  +   S  I  I L     +  K     V  K    SL+++ 
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 210 ------------LEVRTQDSQE------IIE------CLDKENKELKEKLDSY------- 238
                       LE++ +   E      I++        D  +  +   LD Y       
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGH 479

Query: 239 -----ETNGRV-----------FCQ-KI-----------------------EEWMEKED- 257
                E   R+           F + KI                       + ++   D 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 258 ---RKQLDIQSLVSELERNFTVSKETC 281
              R    I   + ++E N   SK T 
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 61/478 (12%), Positives = 146/478 (30%), Gaps = 140/478 (29%)

Query: 14  DVEELLQIETRCRELRKEKDTLRESQSQSFD-------------LIKRL-------ELHA 53
           +++ ++  +       +   TL   Q +                L+  +        +  
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 54  KSLSEAHNE--------DKKHIQKLE--RELMNCSQEIDYLQDQLN-------------- 89
           +   E  +          K ++ +L+   +L     E   L+   N              
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWV 166

Query: 90  ----ARNEEVYSLSE-HVHSLELKLVD-----MEILQDKVGQLEEELRRSDSECLLLMEE 139
                 + +V    +  +  L LK  +     +E+LQ  + Q++            +   
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 140 LQSKEERLRNSALHIKKLEESI-------SSSALES---QCEI-----ESLKIDMIALEQ 184
           + S +  LR   L  K  E  +       ++ A  +    C+I          D ++   
Sbjct: 227 IHSIQAELRR-LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 185 TCVEAKKVHKENVQEKARMNSLIKELEVRTQD-SQEIIEC----LDKENKELKEKLDSYE 239
           T   +   H   +      + L+K L+ R QD  +E++      L    + +++ L +++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 240 TNGRVFCQKIEEWMEKEDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLG 299
               V C K+   +E        +  L     R                 +  +L+ V  
Sbjct: 346 NWKHVNCDKLTTIIES------SLNVLEPAEYR----------------KMFDRLS-VFP 382

Query: 300 PDANLKEKIKGMSLQICEYELLVKQLKEELRAEKFKAKEEAEDLAQEMA----------E 349
           P A++   +           L+   + +           +   +  ++           E
Sbjct: 383 PSAHIPTIL---------LSLIWFDVIK----------SDVMVVVNKLHKYSLVEKQPKE 423

Query: 350 LRYQMTSL-LEEECKR-------RACIEQASLQRIAELETQIEKGQNKFVAT--GRHL 397
               + S+ LE + K        R+ ++  ++ +  + +  I    +++  +  G HL
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 9/77 (11%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 26  RELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELMNCSQEI---- 81
           +++R +  T   +     + +++L+ +   + +   + ++ +  +   L    + +    
Sbjct: 505 QKIRHD-STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 82  --DYLQDQLNARNEEVY 96
             D L+  L A +E ++
Sbjct: 564 YTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 33/310 (10%), Positives = 83/310 (26%), Gaps = 101/310 (32%)

Query: 101 HVHSLELKLVDME-----ILQD---------KVGQLEEELRR--SDSECLLLMEELQSKE 144
           H H ++ +  + +     IL               +++  +   S  E   ++   +   
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAV 61

Query: 145 ERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVHKENVQEKARMN 204
                    +   +E +    +E     E L+I+   L         +  E  Q      
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVE-----EVLRINYKFL------MSPIKTEQRQPSMMTR 110

Query: 205 SLIKELEVRTQDSQEIIE---CLDKENKELKEKLDSYETNGRVF------CQKIEEWMEK 255
             I++ +    D+Q   +      +   +L++ L        V         K       
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK------- 163

Query: 256 EDRKQLDIQSLVSELERNFTVSKETCFCGKVFGALLSKLALVLGPDANLKEKIKGMSLQI 315
                     +  ++  ++ V  +     K+F                       ++L+ 
Sbjct: 164 --------TWVALDVCLSYKV--QCKMDFKIFW----------------------LNLKN 191

Query: 316 CEYELLVKQLKEELRAEKFKAKEEAEDLAQEMAELRYQMTSLLEEECKRRACIEQASLQR 375
           C                        E + + + +L YQ+           + I+     R
Sbjct: 192 CN---------------------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LR 226

Query: 376 IAELETQIEK 385
           I  ++ ++ +
Sbjct: 227 IHSIQAELRR 236

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 16  EELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLERELM 75
           + L Q+E +  E+++    ++ + +              + +    +  + I K E  ++
Sbjct: 45  DILHQVENKTSEVKQLIKAIQLTYNP---DESSKPNMIDAATLKSRKMLEEIMKYEASIL 101

Query: 76  NCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKL 109
                I YLQ+  N+ N+++ +L E V  LE + 
Sbjct: 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 23/216 (10%), Positives = 67/216 (31%), Gaps = 8/216 (3%)

Query: 17   ELLQIETRCRELRKEKDTLRESQSQSFDLIKRLELHAKSLSEAHNEDKKHIQKLER--EL 74
            E +Q      +  K+ +     + Q    ++ +    ++       +           E+
Sbjct: 799  ESVQSFMNAHKEYKKTEKPP--KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 856

Query: 75   MNCSQEIDYLQDQLNARNEEVYSLSEHVHSLELKLVDM-EILQDKVGQLEEELRRSDSEC 133
             +    ++  + +            + +  L  K   + + L++        L  +++  
Sbjct: 857  DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 916

Query: 134  LLLMEELQSKEERLRNSALHIKKLEESISSSALESQCEIESLKIDMIALEQTCVEAKKVH 193
             +    +Q+K + L       + LE   +S  L    ++  L  +    E T  +     
Sbjct: 917  SI--TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN-GVPELTERKDTFFA 973

Query: 194  KENVQEKARMNSLIKELEVRTQDSQEIIECLDKENK 229
            ++    K+   +    L    +  Q+I +     + 
Sbjct: 974  QQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.85
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.1
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.94
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	83.53

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.85  E-value=0.0022  Score=68.42  Aligned_cols=47  Identities=30%  Similarity=0.466  Sum_probs=0.0

Q ss_pred             HhHHHHHhhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHh
Q 015871          309 KGMSLQICEYELLVKQLKEELRAEKF---KAKEEAEDLAQEMAELRYQMT  355 (399)
Q Consensus       309 e~Ms~qi~eyE~LvkQLKeELREEKL---KAKEEAEDLtQEMAELRYQmT  355 (399)
                      ..+..++.+.+.-++.|.++|.+++.   +...+-.+|..++.+|+-+|.
T Consensus      1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S         1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555544322   222233455555555555443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.10  E-value=0.17  Score=54.26  Aligned_cols=15  Identities=33%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHH
Q 015871          337 KEEAEDLAQEMAELR  351 (399)
Q Consensus       337 KEEAEDLtQEMAELR  351 (399)
                      ..+-++|.+.+.++.
T Consensus      1150 ~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S         1150 SEELEALKTELEDTL 1164 (1184)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHHHHh
Confidence            334444444444443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.94  E-value=22  Score=31.34  Aligned_cols=60  Identities=20%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhHHHHHhhhh
Q 015871          178 DMIALEQTCVE-AKKVHKENVQEKARMNSLIKELEVRTQDSQEIIECLDKENKELKEKLDS  237 (399)
Q Consensus       178 D~~aLEQ~lfd-A~k~q~et~~ek~~m~~~i~Elq~q~q~Aqe~i~~L~keNkeL~ekl~~  237 (399)
                      .+-.|=.+||+ |.+.--..-.+.+....-+..|+.++.++...|+.+..+...|+.-+-.
T Consensus        87 ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~  147 (154)
T 2ocy_A           87 EVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS  147 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456678895 6666666666777788888899999999999999999999999876544

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=83.53  E-value=2.7  Score=34.12  Aligned_cols=51  Identities=31%  Similarity=0.372  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhh----HHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhcc
Q 015871          338 EEAEDLAQEMAELRYQMTSL----LEEECKRRAC-IEQASLQRIA-ELETQIEKGQN  388 (399)
Q Consensus       338 EEAEDLtQEMAELRYQmTgl----LEEEcKRRaC-IEQASLQRIa-ELEAQi~ke~~  388 (399)
                      -+||||.|||.+|||.+|.|    +--|-|-+|- -|-|+||+.- .=+|-|++-|.
T Consensus        19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~   75 (81)
T 3qh9_A           19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            46889999999999999987    3335666666 6788888743 33555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00