Citrus Sinensis ID: 015907
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.424 | 0.172 | 0.241 | 0.0003 |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function desciption |
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Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 30/199 (15%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
Y E + I P + A A E GD RA+ ++ K KP+ PD + LG V L
Sbjct: 212 YLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALG 271
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ Y+ + + +P+ A+ F + G+ DL+
Sbjct: 272 RPTEAIMCYQHALQM--------------------RPNSAMAFGNIASIYYEQGQL-DLA 310
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
++ + + DP +E LG A D GRV +AV Y++ ++ PN +
Sbjct: 311 IRHYKQALSR-------DPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQPNHPQAMA 363
Query: 359 AKGIILKENGKVGDAERMF 377
G I E +G A +F
Sbjct: 364 NLGNIYMEWNMMGPASSLF 382
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O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | ||||||
| 118486611 | 405 | unknown [Populus trichocarpa] | 0.959 | 0.943 | 0.707 | 1e-153 | |
| 225443365 | 418 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.913 | 0.722 | 1e-144 | |
| 224097412 | 335 | predicted protein [Populus trichocarpa] | 0.834 | 0.991 | 0.757 | 1e-141 | |
| 356521558 | 389 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.976 | 0.673 | 1e-139 | |
| 255544492 | 348 | conserved hypothetical protein [Ricinus | 0.826 | 0.945 | 0.750 | 1e-138 | |
| 356526348 | 393 | PREDICTED: uncharacterized protein LOC10 | 0.952 | 0.964 | 0.666 | 1e-135 | |
| 147821837 | 410 | hypothetical protein VITISV_041630 [Viti | 0.962 | 0.934 | 0.697 | 1e-135 | |
| 297842675 | 384 | binding protein [Arabidopsis lyrata subs | 0.954 | 0.989 | 0.652 | 1e-134 | |
| 22330732 | 385 | tetratricopeptide repeat-containing prot | 0.954 | 0.987 | 0.639 | 1e-134 | |
| 334183999 | 402 | tetratricopeptide repeat-containing prot | 0.954 | 0.945 | 0.611 | 1e-131 |
| >gi|118486611|gb|ABK95143.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/400 (70%), Positives = 332/400 (83%), Gaps = 18/400 (4%)
Query: 9 AASGLLAFRIQCSD-SKPRRGFGNKTDK-TNKE--------EKKGVMSQPKRKSLSKQSG 58
++S L F +QCSD S PRRGFG+K+D TN + E+KG M+ +RKS +KQS
Sbjct: 14 SSSKFLRFGVQCSDNSSPRRGFGSKSDNNTNNKKVRSSSSREEKG-MALQQRKSTTKQS- 71
Query: 59 SLPTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIET 118
+AP LSS ++ KS+ +S+D +FEERL AVRRSALEQKK E IKEFGPIDYD P++T
Sbjct: 72 ----EAPGLSSRFDGKSSRNSADTDFEERLQAVRRSALEQKKTEAIKEFGPIDYDEPVKT 127
Query: 119 EKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRL 178
E KTIGLGTKIGVGVAV++FGLVFALGDFLPSGS PTEEA VVNK+LSEEE+N L+ RL
Sbjct: 128 ENKTIGLGTKIGVGVAVLVFGLVFALGDFLPSGSDGPTEEATVVNKKLSEEEQNTLRARL 187
Query: 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
K+YE TLS +PKDS ALEGAAVTLAELG+YTRA SLLQDLAKEKP DPDVFRLLGE+KYE
Sbjct: 188 KQYELTLSTAPKDSIALEGAAVTLAELGEYTRAASLLQDLAKEKPGDPDVFRLLGEIKYE 247
Query: 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD 298
LKDY+GSAAAYR+S VSK+++FEVLRG NALLAAKKPDEAVQ LLASR +L++GKS
Sbjct: 248 LKDYDGSAAAYRISAAVSKNVDFEVLRGHANALLAAKKPDEAVQVLLASRAKLNSGKSSS 307
Query: 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
+ +K G+ E E Q+VDPIQV+LLLGKAYSD G VSDAV+VYD+LISS+P+DFRGYL
Sbjct: 308 VDIK--VDGNGMEIESQEVDPIQVDLLLGKAYSDWGHVSDAVSVYDQLISSHPDDFRGYL 365
Query: 359 AKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYSKR 398
AKGIILKENG VGDAERMFIQARFFAPEK K LVD+Y+++
Sbjct: 366 AKGIILKENGNVGDAERMFIQARFFAPEKAKVLVDRYARK 405
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443365|ref|XP_002266002.1| PREDICTED: uncharacterized protein LOC100258138 [Vitis vinifera] gi|297735765|emb|CBI18452.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 286/396 (72%), Positives = 331/396 (83%), Gaps = 14/396 (3%)
Query: 13 LLAFRIQCS-DSKPRRGFG-------NKTDK--TNKEEKKGVMSQPKRKSLSKQSGSLPT 62
LL FRI CS DSKP RGFG NK K T+KE K GV+ Q RKS SKQSGS+PT
Sbjct: 27 LLTFRIHCSSDSKPTRGFGPQPPQRDNKMSKSTTSKEGKGGVLQQ--RKSTSKQSGSVPT 84
Query: 63 QAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKT 122
QAP LSS KSN+++ D++FEERL AVRR+ALEQKKA+E KE+G IDYD P+E+E+KT
Sbjct: 85 QAPGLSSRSGGKSNDAAIDLDFEERLEAVRRTALEQKKADEKKEYGAIDYDTPVESEEKT 144
Query: 123 IGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYE 182
IGLGTKIGVGVAVV+FGLVFALGDFLPSGS SP+EEA VV+K+LSEEEK+ LQ RL++YE
Sbjct: 145 IGLGTKIGVGVAVVVFGLVFALGDFLPSGSDSPSEEATVVSKKLSEEEKSTLQARLQQYE 204
Query: 183 ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242
TLS SPKD TALE AAVTL ELG+YTRA SLL+D KEKP+DP+ FRLLGEVK+ LKDY
Sbjct: 205 ATLSSSPKDQTALEAAAVTLVELGEYTRAASLLEDFVKEKPNDPEAFRLLGEVKFALKDY 264
Query: 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK 302
EGSAAAYR S VS+ ++FEVLRGLTNALLAAKKPDEAVQ LLASRERL+ KS +L++K
Sbjct: 265 EGSAAAYRSSAKVSETVDFEVLRGLTNALLAAKKPDEAVQVLLASRERLNKEKSSNLNIK 324
Query: 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362
SG KETE Q+VDP+QVELLLGKAYSD G +SDAV++YD+LISS+P DFRGYLAKGI
Sbjct: 325 SD-SG-TKETESQEVDPVQVELLLGKAYSDWGHISDAVSLYDQLISSHPEDFRGYLAKGI 382
Query: 363 ILKENGKVGDAERMFIQARFFAPEKVKALVDQYSKR 398
ILKENG +GDAERMFIQARFFAPEK K+ VD+YS++
Sbjct: 383 ILKENGNIGDAERMFIQARFFAPEKAKSFVDRYSRK 418
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097412|ref|XP_002310923.1| predicted protein [Populus trichocarpa] gi|222850743|gb|EEE88290.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/334 (75%), Positives = 292/334 (87%), Gaps = 2/334 (0%)
Query: 65 PFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIG 124
P LSS ++ KS+ +S+D +FE+RL AVRRSALEQKK E IKEFGPIDYD P++TE KTIG
Sbjct: 4 PGLSSCFDGKSSRNSADSDFEQRLQAVRRSALEQKKTEAIKEFGPIDYDEPVKTENKTIG 63
Query: 125 LGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEET 184
LGTKIGVGVAV++FGLVFALGDFLPSGS PTEEA VVNK+LSEEE+N L+ RLK+YE T
Sbjct: 64 LGTKIGVGVAVLVFGLVFALGDFLPSGSDGPTEEATVVNKKLSEEEQNTLRARLKQYELT 123
Query: 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244
LS +PKDS ALEGAAVTLAELG+YTRA SLLQDLAKEKP DPDVFRLLGE+KYELKDY+G
Sbjct: 124 LSTAPKDSIALEGAAVTLAELGEYTRAASLLQDLAKEKPGDPDVFRLLGEIKYELKDYDG 183
Query: 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304
SAAAYR+S VSK+++FEVLRG NALLAAKKPDEAVQ LLASR +L++GKS + +K
Sbjct: 184 SAAAYRISAAVSKNVDFEVLRGHANALLAAKKPDEAVQVLLASRAKLNSGKSSSVDIK-- 241
Query: 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364
G+ E E Q+VDPIQV+LLLGKAYSD G VSDAV+VYD+LISS+P+DFRGYLAKGIIL
Sbjct: 242 VDGNGMEIESQEVDPIQVDLLLGKAYSDWGHVSDAVSVYDQLISSHPDDFRGYLAKGIIL 301
Query: 365 KENGKVGDAERMFIQARFFAPEKVKALVDQYSKR 398
KENG VGDAERMFIQARFFAPEK K LVD+Y+++
Sbjct: 302 KENGNVGDAERMFIQARFFAPEKAKVLVDRYARK 335
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521558|ref|XP_003529421.1| PREDICTED: uncharacterized protein LOC100790462 [Glycine max] | Back alignment and taxonomy information |
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Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 270/401 (67%), Positives = 314/401 (78%), Gaps = 21/401 (5%)
Query: 1 MTAISATAAASGLLAFRIQCSDSKPRRGFGNKTD----KTNKEEKKGVMSQPKRKSLSKQ 56
M A+S ++A F+I CSDSK RGFG T+ KTNK +K G++SQ + S +KQ
Sbjct: 6 MHAMSIRSSA--FFCFQINCSDSKQGRGFGENTNSNRIKTNKSDK-GLVSQQSKGSANKQ 62
Query: 57 SGSLPTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPI 116
S L +QAP LSS + KS N D++FEERL AVRRSALEQKKAEE KEFG IDYDAPI
Sbjct: 63 SRPLSSQAPRLSSQLDGKSRNDFLDVDFEERLKAVRRSALEQKKAEEEKEFGAIDYDAPI 122
Query: 117 ETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT 176
++ TIG+GTKIGVGVAV +FGLVFA GDFLPSGSVSPTE++ VVN +LSEE+K LQ+
Sbjct: 123 PSDNTTIGVGTKIGVGVAVAVFGLVFAFGDFLPSGSVSPTEDSAVVNSKLSEEDKATLQS 182
Query: 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236
RLK++E TLS S +D TALEGAA+TLAELG+Y RA SLL DL KEKP+D DVFRLLGEVK
Sbjct: 183 RLKEFEATLSNSSRDPTALEGAAITLAELGEYARAASLLDDLTKEKPNDADVFRLLGEVK 242
Query: 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296
YELKDYEGS AAY+ S VSKDI FEVLRGL+N+LLAAKKP+EAVQ LLA RE LS+
Sbjct: 243 YELKDYEGSVAAYKSSARVSKDIQFEVLRGLSNSLLAAKKPEEAVQLLLAYREHLSS--- 299
Query: 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRG 356
D T+ QK+DP+QVELLLGKAYSD G V DAVAVYD+LIS++PNDFRG
Sbjct: 300 -----------DSNPTDSQKLDPVQVELLLGKAYSDWGHVRDAVAVYDQLISTHPNDFRG 348
Query: 357 YLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYSK 397
YLAKGIILKEN +GDAERMFIQARFFAP+K KALVD+YS+
Sbjct: 349 YLAKGIILKENKNIGDAERMFIQARFFAPDKAKALVDRYSR 389
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544492|ref|XP_002513307.1| conserved hypothetical protein [Ricinus communis] gi|223547215|gb|EEF48710.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/337 (75%), Positives = 291/337 (86%), Gaps = 8/337 (2%)
Query: 50 RKSLSKQSGSLPTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGP 109
+K S+QSG LP+QAP L++ ++ K + DI+FE+RL AVRRSALEQKK +EIKEFGP
Sbjct: 12 KKLTSRQSGPLPSQAPVLNNRFDGKPK--TMDIDFEQRLEAVRRSALEQKKTDEIKEFGP 69
Query: 110 IDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169
IDYDAP+E+EKKTIGLGTKIG+GVAV++FGLVFALGDFLPS S SP+EE V+K+LSEE
Sbjct: 70 IDYDAPLESEKKTIGLGTKIGIGVAVLVFGLVFALGDFLPSVSDSPSEEVRAVDKKLSEE 129
Query: 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229
EK LQT+LK+YE TL++SPKD TALEGAAVTLAELG+YT+A SLLQDLAKEKP+D DV
Sbjct: 130 EKATLQTQLKQYEATLAVSPKDPTALEGAAVTLAELGEYTQAASLLQDLAKEKPTDTDVL 189
Query: 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289
RLLGEVKYELKDYEGSAAAYR+S+MVSK++NFEVLRG TNALLAA KPDEAVQ LLASRE
Sbjct: 190 RLLGEVKYELKDYEGSAAAYRISSMVSKNVNFEVLRGFTNALLAANKPDEAVQVLLASRE 249
Query: 290 RLSTGKSDDLSVKDGRSGDKK--ETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347
RL++ KS D+ VK GD ETE QKVDPIQV+LLLGKAYSD G VSDAV+VYD+LI
Sbjct: 250 RLNSKKSGDVDVK----GDTNAMETESQKVDPIQVDLLLGKAYSDWGHVSDAVSVYDQLI 305
Query: 348 SSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384
SS+PNDFRGYLAKGIILKENG VGDAERMFIQ + A
Sbjct: 306 SSHPNDFRGYLAKGIILKENGNVGDAERMFIQLKDVA 342
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526348|ref|XP_003531780.1| PREDICTED: uncharacterized protein LOC100777868 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 270/405 (66%), Positives = 313/405 (77%), Gaps = 26/405 (6%)
Query: 1 MTAISATAAASGLLAFRIQCSDSKPRRGFGNKTD--------KTNKEEKKGVMSQPKRKS 52
M A+S ++A F+I CSDSK RGFG T+ KTNK +K S
Sbjct: 7 MHAMSIRSSA--FFCFQINCSDSKQGRGFGENTNSNSNSNRIKTNKSDKG---------S 55
Query: 53 LSKQSGSLPTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDY 112
+KQS L +QAP LSS + KS N D++FEERL AVRRSALEQKKAEE KEFG IDY
Sbjct: 56 TTKQSRPLSSQAPRLSSQLDGKSRNDFLDVDFEERLKAVRRSALEQKKAEEEKEFGAIDY 115
Query: 113 DAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172
API ++ KTIGLGTKIGVGVAV +FGLVFA GDFLPSGSVSPTE++ VVN +LSEE+K
Sbjct: 116 GAPIPSDNKTIGLGTKIGVGVAVAVFGLVFAFGDFLPSGSVSPTEDSAVVNSKLSEEDKA 175
Query: 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232
LQ+RLK++E TLS SP+D ALEGAAVTLAELG+Y RA SLL DL KEKP+D DVFRLL
Sbjct: 176 TLQSRLKEFEATLSNSPRDQIALEGAAVTLAELGEYARASSLLDDLTKEKPNDADVFRLL 235
Query: 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292
GEVKYELKDYEGS AAY+ S VSKDI FEVLRGL+N+LLAAKK +EAVQ LLA RE LS
Sbjct: 236 GEVKYELKDYEGSVAAYKSSARVSKDIQFEVLRGLSNSLLAAKKQEEAVQLLLAYREHLS 295
Query: 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352
S++LS ++ D T+ QK+DP+QVELLLGKAYSD G VSDAV VYD+LIS++PN
Sbjct: 296 ---SENLS----KNSDSNPTDSQKLDPVQVELLLGKAYSDWGHVSDAVTVYDQLISTHPN 348
Query: 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYSK 397
DFRGYLAKGIILKEN +GDAERMFIQARFFAP++ KALVD+YS+
Sbjct: 349 DFRGYLAKGIILKENKNIGDAERMFIQARFFAPDRAKALVDRYSR 393
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147821837|emb|CAN63743.1| hypothetical protein VITISV_041630 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 270/387 (69%), Positives = 319/387 (82%), Gaps = 4/387 (1%)
Query: 13 LLAFRIQCS-DSKPRRGFGNKTDKTNKEEKKGVMSQPKRKSLSKQSGSLPTQAPFLSSGY 71
LL FRI CS DSKP RGFG + + +K+ + +MS +L + +L AP LSS
Sbjct: 27 LLTFRIHCSSDSKPTRGFGPQPPQRDKKYFQSLMSI-DAGNLHLNNLALYRLAPGLSSRS 85
Query: 72 NSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGV 131
KSN+++ D++FEERL AVRR+ALEQKKA+E KE+G IDYD P+E+E+KTIGLGTKIGV
Sbjct: 86 GGKSNDAAIDLDFEERLEAVRRTALEQKKADEKKEYGAIDYDTPVESEEKTIGLGTKIGV 145
Query: 132 GVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD 191
GVAVV+FGLVFALGDFLPSGS SP+EEA VV+K+LSEEEK LQ RL++YE TLS SPKD
Sbjct: 146 GVAVVVFGLVFALGDFLPSGSDSPSEEATVVSKKLSEEEKATLQARLQQYEATLSSSPKD 205
Query: 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251
TALE AAVTL ELG+YTRA SLL+D KEKP+DP+ FRLLGEVK+ LKDYEGSAAAYR
Sbjct: 206 QTALEAAAVTLVELGEYTRAASLLEDFVKEKPNDPEAFRLLGEVKFALKDYEGSAAAYRS 265
Query: 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311
S VS+ ++FEVLRGLTNALLAAKKPDEAVQ LLASRERL+ KS +L++K SG KE
Sbjct: 266 SAKVSETVDFEVLRGLTNALLAAKKPDEAVQVLLASRERLNKEKSSNLNIKSD-SG-TKE 323
Query: 312 TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVG 371
TE Q+VDP+QVELLLGKAYSD G +SDAV+VYD+LISS+P DFRGYLAKGIILKENG +G
Sbjct: 324 TESQEVDPVQVELLLGKAYSDWGHISDAVSVYDQLISSHPEDFRGYLAKGIILKENGNIG 383
Query: 372 DAERMFIQARFFAPEKVKALVDQYSKR 398
DAERMFIQARFFAPEK K+ VD+YS++
Sbjct: 384 DAERMFIQARFFAPEKAKSFVDRYSRK 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842675|ref|XP_002889219.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335060|gb|EFH65478.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 261/400 (65%), Positives = 310/400 (77%), Gaps = 20/400 (5%)
Query: 1 MTAISATAAAS---GLLAFRIQCSDSKPRRGFGNKTDKTNKEEKKGVMSQPKRKSLSKQS 57
MT +AT A S LL FRI+CSDS P+RGFG K KEEK + Q RKS SKQS
Sbjct: 1 MTLAAATTAVSFNSKLLVFRIRCSDSNPKRGFGFK-----KEEKDPALQQ--RKSSSKQS 53
Query: 58 GSLPTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIE 117
S+P +AP L++ + KS S DI+FEERL +RRSALEQKK E +KEFGPIDYDAPI+
Sbjct: 54 VSVPRKAPGLNTQFEGKSG-PSFDIDFEERLENIRRSALEQKKTEVVKEFGPIDYDAPIK 112
Query: 118 TEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTR 177
+++KTIGLGTK+GVG+AVV+FGLVFALGDFLP+GS SPT+ VV ++SEEEK LQ R
Sbjct: 113 SDQKTIGLGTKVGVGIAVVVFGLVFALGDFLPTGSDSPTKNTTVVKNQISEEEKATLQQR 172
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
LK++E TL+ +PKD ALEGAAVTL ELGDY+RA + L+ LAKE+P+DPDVFRLLGEV Y
Sbjct: 173 LKEFETTLTGTPKDQAALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNY 232
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
ELK+YEGS AAYR+S VSK I+ EV RGL NA LAAK PDEAV+FLL +RERL+T K+
Sbjct: 233 ELKNYEGSIAAYRISEKVSKGIDLEVTRGLMNAYLAAKIPDEAVKFLLDTRERLNTKKT- 291
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
S T+ +DPIQVELLLGKAYSD G +SDA+AVYD+LIS++P DFRG
Sbjct: 292 --------STSDSVTDETNLDPIQVELLLGKAYSDWGHISDAIAVYDQLISAHPEDFRGC 343
Query: 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYSK 397
LAKGIIL+ENG GDAERMFIQARFFAP+K KALVD+YSK
Sbjct: 344 LAKGIILRENGSRGDAERMFIQARFFAPDKAKALVDRYSK 383
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22330732|ref|NP_683507.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|26452264|dbj|BAC43219.1| unknown protein [Arabidopsis thaliana] gi|30725310|gb|AAP37677.1| At1g78915 [Arabidopsis thaliana] gi|332198053|gb|AEE36174.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/397 (63%), Positives = 310/397 (78%), Gaps = 17/397 (4%)
Query: 1 MTAISATAAASGLLAFRIQCSDSKPRRGFGNKTDKTNKEEKKGVMSQPKRKSLSKQSGSL 60
+ A ++ + S LL FRI+CSDS P+RGFG+K KEEK + Q RKS SKQS S+
Sbjct: 5 LAATTSVSFNSKLLLFRIRCSDSNPKRGFGSK-----KEEKDPALQQ--RKSSSKQSVSV 57
Query: 61 PTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEK 120
P +AP L++ + KS S DI+F+ERL +RRSALEQKK E +KEFGPIDYDAP+++++
Sbjct: 58 PRKAPGLNTQFEGKSGRSF-DIDFDERLENIRRSALEQKKTEVVKEFGPIDYDAPVKSDQ 116
Query: 121 KTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKK 180
KTIGLGTK+GVG+AVV+FGLVFALGDFLP+GS SPT+ VV ++SEEEK LQ RLK+
Sbjct: 117 KTIGLGTKVGVGIAVVVFGLVFALGDFLPTGSDSPTKNTTVVKNQISEEEKATLQQRLKE 176
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+E TL+ +P+D ALEGAAVTL ELGDY+RA + L+ LAKE+P+DPDVFRLLGEV YEL
Sbjct: 177 FETTLNGTPQDQAALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYELN 236
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+YEGS AAY++S VSK I+ EV RGL NA LAAKKPDEAV+FLL +RERL+T K+
Sbjct: 237 NYEGSIAAYKISEKVSKGIDLEVTRGLMNAYLAAKKPDEAVKFLLDTRERLNTKKT---- 292
Query: 301 VKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360
S T+ +DPIQVELLLGKAYSD G +SDA+AVYD+LIS++P DFRGYLAK
Sbjct: 293 -----STTDSVTDETNLDPIQVELLLGKAYSDWGHISDAIAVYDQLISAHPEDFRGYLAK 347
Query: 361 GIILKENGKVGDAERMFIQARFFAPEKVKALVDQYSK 397
GIIL+ENG GDAERMFIQARFFAP K KALVD+YSK
Sbjct: 348 GIILRENGSRGDAERMFIQARFFAPNKAKALVDRYSK 384
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183999|ref|NP_001185430.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332198054|gb|AEE36175.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/414 (61%), Positives = 310/414 (74%), Gaps = 34/414 (8%)
Query: 1 MTAISATAAASGLLAFRIQCSDSKPRRGFGNKTDKTNKEEKKGVMSQPKRKSLSKQSGSL 60
+ A ++ + S LL FRI+CSDS P+RGFG+K KEEK + Q RKS SKQS S+
Sbjct: 5 LAATTSVSFNSKLLLFRIRCSDSNPKRGFGSK-----KEEKDPALQQ--RKSSSKQSVSV 57
Query: 61 PTQAPFLSSGYNSKSNNSSSDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEK 120
P +AP L++ + KS S DI+F+ERL +RRSALEQKK E +KEFGPIDYDAP+++++
Sbjct: 58 PRKAPGLNTQFEGKSGRSF-DIDFDERLENIRRSALEQKKTEVVKEFGPIDYDAPVKSDQ 116
Query: 121 KTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVS-----------------PTEEAGVVN 163
KTIGLGTK+GVG+AVV+FGLVFALGDFLP+G +S PT+ VV
Sbjct: 117 KTIGLGTKVGVGIAVVVFGLVFALGDFLPTGRISWVGFRNFTFLSYQVIDSPTKNTTVVK 176
Query: 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223
++SEEEK LQ RLK++E TL+ +P+D ALEGAAVTL ELGDY+RA + L+ LAKE+P
Sbjct: 177 NQISEEEKATLQQRLKEFETTLNGTPQDQAALEGAAVTLTELGDYSRAAAFLEKLAKERP 236
Query: 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283
+DPDVFRLLGEV YEL +YEGS AAY++S VSK I+ EV RGL NA LAAKKPDEAV+F
Sbjct: 237 TDPDVFRLLGEVNYELNNYEGSIAAYKISEKVSKGIDLEVTRGLMNAYLAAKKPDEAVKF 296
Query: 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVY 343
LL +RERL+T K+ S T+ +DPIQVELLLGKAYSD G +SDA+AVY
Sbjct: 297 LLDTRERLNTKKT---------STTDSVTDETNLDPIQVELLLGKAYSDWGHISDAIAVY 347
Query: 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYSK 397
D+LIS++P DFRGYLAKGIIL+ENG GDAERMFIQARFFAP K KALVD+YSK
Sbjct: 348 DQLISAHPEDFRGYLAKGIILRENGSRGDAERMFIQARFFAPNKAKALVDRYSK 401
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | ||||||
| UNIPROTKB|Q74BQ4 | 896 | GSU1987 "TPR domain lipoprotei | 0.520 | 0.231 | 0.243 | 3.1e-05 | |
| TIGR_CMR|GSU_1987 | 896 | GSU_1987 "TPR domain protein" | 0.520 | 0.231 | 0.243 | 3.1e-05 | |
| TAIR|locus:2049741 | 333 | AT2G37400 "AT2G37400" [Arabido | 0.226 | 0.270 | 0.290 | 0.00012 | |
| UNIPROTKB|Q489H8 | 917 | CPS_0528 "TPR domain protein" | 0.562 | 0.244 | 0.245 | 0.00067 | |
| TIGR_CMR|CPS_0528 | 917 | CPS_0528 "TPR domain protein" | 0.562 | 0.244 | 0.245 | 0.00067 |
| UNIPROTKB|Q74BQ4 GSU1987 "TPR domain lipoprotein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 55/226 (24%), Positives = 93/226 (41%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L+ Y + +++P D L V L E G+ +A + L ++ P + RL G + Y
Sbjct: 217 LEIYRKVAALTPGDPAPLYRQGVILLEKGEMDKAEKTAETLVQKFPQKSEGARLKGLIAY 276
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLT--------NALLAAKK-----PDEAVQFL 284
+ K+Y + A + S ++ + GL+ NAL ++ PD L
Sbjct: 277 QRKNYADAITALQTSVKIAPSLEGLYYLGLSMYSRGELENALSQFRRILDHTPDFVQARL 336
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344
L + L+ + DD + R+ ET+ + +LG AY G + + +
Sbjct: 337 LTALILLNQKRVDDAIAEANRA---IETDSRSA---LARNILGSAYLAKGMYDEGIRELN 390
Query: 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
R P +L KGI G+V +AE F A APE + +
Sbjct: 391 RATELDPKIVDAHLKKGIFNLSKGRVREAESDFTTAVRVAPEMLNS 436
|
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| TIGR_CMR|GSU_1987 GSU_1987 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 55/226 (24%), Positives = 93/226 (41%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L+ Y + +++P D L V L E G+ +A + L ++ P + RL G + Y
Sbjct: 217 LEIYRKVAALTPGDPAPLYRQGVILLEKGEMDKAEKTAETLVQKFPQKSEGARLKGLIAY 276
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLT--------NALLAAKK-----PDEAVQFL 284
+ K+Y + A + S ++ + GL+ NAL ++ PD L
Sbjct: 277 QRKNYADAITALQTSVKIAPSLEGLYYLGLSMYSRGELENALSQFRRILDHTPDFVQARL 336
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344
L + L+ + DD + R+ ET+ + +LG AY G + + +
Sbjct: 337 LTALILLNQKRVDDAIAEANRA---IETDSRSA---LARNILGSAYLAKGMYDEGIRELN 390
Query: 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
R P +L KGI G+V +AE F A APE + +
Sbjct: 391 RATELDPKIVDAHLKKGIFNLSKGRVREAESDFTTAVRVAPEMLNS 436
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| TAIR|locus:2049741 AT2G37400 "AT2G37400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 297 DDLSVKDGRSGD---KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND 353
DDL+ + R + + + E + D +LL+ + G+ ++A+ +Y+ L+ P D
Sbjct: 213 DDLNAVEKRIEEAMVRCKKEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRD 272
Query: 354 FRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386
FR YL +GII K +AE+ F + R P+
Sbjct: 273 FRPYLCQGIIYTVLKKENEAEKQFEKFRRLVPK 305
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| UNIPROTKB|Q489H8 CPS_0528 "TPR domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 0.00067, P = 0.00067
Identities = 61/248 (24%), Positives = 99/248 (39%)
Query: 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG---------AAVTLAELGDYTRAVS 213
N L+ + K ++ + K YE+ S + S A +G A ++ +LGD +A
Sbjct: 267 NSPLAHQYKAQVEYQKKNYEDARSYAI--SAAQQGNEFIISKLIAGMSSYQLGDIEQAYG 324
Query: 214 LLQDLAKEKPSDPDVFRLLGEVKYELK-DYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272
L K PS + R+L +K +L EG + + + D + + + L+
Sbjct: 325 YLNQTEKYLPSSHPIKRILASIKIKLGYTTEGIVQLSALEGLTTSDAG--LFQSSSIELI 382
Query: 273 AAKKPDEAVQFL----LASRERLSTGKSDD---LSVKDGRSGDKKETEPQKVDPI--QVE 323
A + A++ L + + E S LS D ++G +DP VE
Sbjct: 383 KAGDFENAIKLLDKASIIAPENASVAAQKGMLKLSQND-KTGIASLEHALNLDPNLKDVE 441
Query: 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383
L Y D G+ ++ + I+S N GYL GII N AE + +A
Sbjct: 442 FSLAIQYLDNGQEKKVRSIAKKWIASQDNQASGYLLLGIIHSNNNLSSKAEENYQKALSI 501
Query: 384 APEKVKAL 391
PE AL
Sbjct: 502 EPENYTAL 509
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| TIGR_CMR|CPS_0528 CPS_0528 "TPR domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 0.00067, P = 0.00067
Identities = 61/248 (24%), Positives = 99/248 (39%)
Query: 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG---------AAVTLAELGDYTRAVS 213
N L+ + K ++ + K YE+ S + S A +G A ++ +LGD +A
Sbjct: 267 NSPLAHQYKAQVEYQKKNYEDARSYAI--SAAQQGNEFIISKLIAGMSSYQLGDIEQAYG 324
Query: 214 LLQDLAKEKPSDPDVFRLLGEVKYELK-DYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272
L K PS + R+L +K +L EG + + + D + + + L+
Sbjct: 325 YLNQTEKYLPSSHPIKRILASIKIKLGYTTEGIVQLSALEGLTTSDAG--LFQSSSIELI 382
Query: 273 AAKKPDEAVQFL----LASRERLSTGKSDD---LSVKDGRSGDKKETEPQKVDPI--QVE 323
A + A++ L + + E S LS D ++G +DP VE
Sbjct: 383 KAGDFENAIKLLDKASIIAPENASVAAQKGMLKLSQND-KTGIASLEHALNLDPNLKDVE 441
Query: 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383
L Y D G+ ++ + I+S N GYL GII N AE + +A
Sbjct: 442 FSLAIQYLDNGQEKKVRSIAKKWIASQDNQASGYLLLGIIHSNNNLSSKAEENYQKALSI 501
Query: 384 APEKVKAL 391
PE AL
Sbjct: 502 EPENYTAL 509
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.132 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 398 371 0.00086 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 563 (60 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.85u 0.28s 36.13t Elapsed: 00:00:05
Total cpu time: 35.85u 0.28s 36.13t Elapsed: 00:00:06
Start: Tue May 21 02:32:16 2013 End: Tue May 21 02:32:22 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00029601001 | SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (418 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 398 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 7e-06 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 9e-06 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 4e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 30/220 (13%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
L+ + + L +P A A LG A++ L P DP LLG
Sbjct: 311 LEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370
Query: 234 EVKYELKDYEGSAAAY--RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291
E L D+E AA Y + + + ++ G++ L+ P EA+ L +
Sbjct: 371 EAYLALGDFE-KAAEYLAKATELDPENAAARTQLGISK--LSQGDPSEAIADLETA---- 423
Query: 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351
+ +P + + +LLL +Y G+ A+A +L P
Sbjct: 424 ------------------AQLDP---ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462
Query: 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
++ + G I G + A F +A P+ A
Sbjct: 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA 502
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This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
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Score = 49.7 bits (119), Expect = 7e-08
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L+ YE+ L + P ++ A A +LG Y A+ + + P + + LG Y
Sbjct: 20 LEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79
Query: 238 ELKDYEGSAAAYR 250
+L YE + AY
Sbjct: 80 KLGKYEEALEAYE 92
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Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 27/176 (15%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ + L + P ++ A G A L A + + L K+ P F L G++
Sbjct: 655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
KDY + AYR + + + + L ALLA+ EAV+ L A L T +D
Sbjct: 715 RQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAW---LKTHPND 769
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND 353
+ L + Y A+ Y ++ P++
Sbjct: 770 ----------------------AVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
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This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-06
Identities = 14/53 (26%), Positives = 19/53 (35%)
Query: 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250
A GDY A++ L+ P + LLGE +AA R
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLR 55
|
Length = 65 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248
A G A+ G Y A+ LLQ L +P +P L G++ E + +
Sbjct: 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIER 362
Query: 249 YRVSTMVSKDINFEVLR-GLTNALLAAKKPDEAVQFLLAS 287
+ ++ D N +L+ L ALL KP EA++ L
Sbjct: 363 LK--KALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400
|
Length = 484 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234
L+ Y + L P + L G A+TLA+ G A+ L++ P+D + L
Sbjct: 103 DKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEALAY 162
Query: 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280
V +D+ + A++ + + D N E L L P A
Sbjct: 163 VLRAAEDHLDALQAWQQALTLEPD-NPEAALELYRILTRLGAPPAA 207
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 5e-05
Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 17/236 (7%)
Query: 169 EEKNVLQTRLKKYEETLSISPKDSTA--LEGAAVTLAELGDYTRAVSLLQDLAK--EKPS 224
E L L+ EE L + P A L A+ L +LG A+ LL+ + P+
Sbjct: 34 ELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN 93
Query: 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+ LG + L YE + + + D + AL +EA++
Sbjct: 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKV-------------DPIQVELLLGKAYS 331
+ E ++ + + ++ D + L LG Y
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213
Query: 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387
G+ +A+ Y++ + P++ ++L E G+ +A +A P+
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
K YE+ L+I P+ A G A + A +L+ ++ P + D L G++
Sbjct: 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205
Query: 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290
L + E + AAYR + + + N VL L L+ A + +EA + A ++
Sbjct: 206 LGNIELALAAYRKAIALRPN-NIAVLLALATILIEAGEFEEAEKHADALLKK 256
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258
A L + G A+ +L P DP+ + LL + EL + + A
Sbjct: 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR--------- 431
Query: 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294
AL + ++A+ FL+ + +++ G
Sbjct: 432 -------AEGYALAG--RLEQAIIFLMRASQQVKLG 458
|
Length = 484 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR-VS 252
AL +LGDY A+ + + P + D + L Y+L YE + Y
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 253 TMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+ + G A K +EA++
Sbjct: 62 ELDPDNAKAYYNLG--LAYYKLGKYEEALEAY 91
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 316 KVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDA 373
++DP L AY G+ +A+ Y++ + P++ + Y G+ + GK +A
Sbjct: 28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87
Query: 374 ERMFIQA 380
+ +A
Sbjct: 88 LEAYEKA 94
|
Length = 100 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226
L E L+ P + AL L G A +LL+ P DP
Sbjct: 17 LAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.002
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377
L L +A G +A+A + ++ YP L G L G++ +A +
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALL 54
|
Length = 65 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 10/196 (5%)
Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265
G + +A++ + L K++P + + LLG + D + A+ + + D F
Sbjct: 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAA 503
Query: 266 GLTNALLAAKKPDEAVQ----FLLASRERLST-GKSDDLSVKDGRSGDKKE--TEPQKVD 318
L + PD+A+Q L + L L ++ G + + +++
Sbjct: 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563
Query: 319 P--IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERM 376
P I+ L L + Y G++ A+A+ + + P+ +L G G + A
Sbjct: 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS 623
Query: 377 FIQARFFAPEKVKALV 392
F + P+ AL+
Sbjct: 624 FKKLLALQPDSALALL 639
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.9 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.9 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.89 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.89 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.82 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.79 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.77 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.77 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.75 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.7 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.69 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.63 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.59 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.54 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.52 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.51 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.5 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.5 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.33 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.23 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.23 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.23 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.22 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.18 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.16 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.14 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.12 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.11 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.1 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.07 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.04 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.01 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.99 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.96 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.93 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.92 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.85 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.83 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.81 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.8 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.64 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.61 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.44 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.41 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.4 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.3 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.28 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.18 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.12 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.07 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.05 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.02 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.87 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.86 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.81 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.75 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.73 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.7 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.68 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.63 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.63 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.6 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.59 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.58 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.54 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.34 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.33 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.32 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.31 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.28 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.27 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.24 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.21 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.06 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.05 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 97.05 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.05 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.04 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.01 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.96 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.94 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.88 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.87 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.87 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.82 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.79 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.77 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.71 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.7 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.67 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.67 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.55 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.55 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.48 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.46 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.26 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.22 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.21 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.2 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.17 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.15 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.12 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.06 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 96.0 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.97 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.96 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.94 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.9 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.89 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.87 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.86 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.86 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.85 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.75 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.73 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.58 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.45 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.45 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.43 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.34 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.27 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.24 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.23 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.17 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.13 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.07 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.95 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.63 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.3 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.13 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.92 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 93.91 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.85 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.78 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.76 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.7 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.56 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.45 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 93.37 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 93.3 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.22 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.05 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.04 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.85 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 92.79 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 92.68 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.67 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.64 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 92.32 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.29 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.29 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.27 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.99 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.65 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.63 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 91.47 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 91.41 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 91.1 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 90.99 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 90.9 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.86 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 90.19 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 90.04 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.73 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 89.4 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 89.24 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.2 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.18 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.95 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 88.85 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 88.81 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 88.77 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 88.7 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 88.0 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 87.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.88 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 87.7 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 87.65 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.36 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.15 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.51 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 86.5 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 86.45 | |
| PF12854 | 34 | PPR_1: PPR repeat | 86.34 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.11 | |
| PF12854 | 34 | PPR_1: PPR repeat | 85.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.94 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 85.88 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 85.67 | |
| KOG2758 | 432 | consensus Translation initiation factor 3, subunit | 85.6 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 85.49 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 85.17 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.79 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.68 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 84.36 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 83.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.34 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 81.85 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 81.29 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 81.21 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 80.79 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 80.45 | |
| TIGR00985 | 148 | 3a0801s04tom mitochondrial import receptor subunit | 80.44 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.33 | |
| PF04348 | 536 | LppC: LppC putative lipoprotein; InterPro: IPR0074 | 80.08 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 80.03 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=269.60 Aligned_cols=289 Identities=18% Similarity=0.210 Sum_probs=256.4
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
.+++..||...|.+++...|...-+|.. +|-. .| .-.|+..|.+++.++ |....+|+++|.+|-+.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsn-Lg~~f~~~Gei~~aiq~y~eAvkld---------P~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSN-LGCVFNAQGEIWLAIQHYEEAVKLD---------PNFLDAYINLGNVYKEA 265 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehh-cchHHhhcchHHHHHHHHHHhhcCC---------CcchHHHhhHHHHHHHH
Confidence 4566777888888888888887777777 7766 67 888888888888888 99999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
+.+++|+.+|.+++.+.|++..++.++|.+|+.+|..+-|+..|++++++.|..++++.++|.++...|+..+|..+|.+
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCc--hH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPI--QV 322 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 322 (398)
++.+.|. .+++.++||.++..+|.+++|..+|.++++..+.-.. +.++...|++.+ ..+.+++.+.|. ++
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 9999999 8999999999999999999999999888887766543 445556666665 668888888887 56
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
+.++|..|..+|+.+.|+.+|.+++..+|...+++.+||.+|...|+..+|+..|++++.+.||.+++..|+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=261.55 Aligned_cols=299 Identities=17% Similarity=0.143 Sum_probs=254.0
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCC-----------------------
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFL----------------------- 148 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~----------------------- 148 (398)
.+++.++|+..|+.+++..|+..+++.. ++.+ .| .+.|...|..++.+++.+
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~in-la~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYIN-LAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhh-HHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 4566677777777777777766666644 5544 33 555555555555544311
Q ss_pred --CCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 149 --PSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 149 --~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
......|..+.+|.++|-.+...|+...|+..|+++++++|+.+++|.+||.+|...+.|++|+.+|.+++.+.|.+.
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 011222888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhh
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSV 301 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~ 301 (398)
.++-++|.+|.++|+.+-|+.+|++++++.|. .++++.++|.++...|+..+|..+|.+++...+..++ ++++.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999998888877 66777
Q ss_pred hcccccc--ccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 302 KDGRSGD--KKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 302 ~~~~~~~--~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
..+.++. ..+..++...|.. +..+||.+|.++|++++|+.+|++++.+.|...+++.++|..|..+|+...|+..|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 7777776 4467777777874 55569999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHhhh
Q 015907 378 IQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 378 ~~al~~~p~~~~~~~~l~~ 396 (398)
.+|+.++|..+++..|+.+
T Consensus 446 ~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred HHHHhcCcHHHHHHhhHHH
Confidence 9999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=237.80 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=208.5
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
....+++++|+..|++++...|+ +..+.. +|.+ .| ++.|+..+.+++.++ |++..+|+.+|.++.
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n-~a~~~~~l~~~~~Ai~~~~~al~l~---------p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECKPD-PVYYSN-RAACHNALGDWEKVVEDTTAALELD---------PDYSKALNRRANAYD 205 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-hHHHHH-HHHHHHHhCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHH
Confidence 34668899999999999999996 444444 7776 78 999999999999998 999999999999988
Q ss_pred HhccHHHHHHHHHHH-----------------------------------------------------------------
Q 015907 170 EKNVLQTRLKKYEET----------------------------------------------------------------- 184 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~----------------------------------------------------------------- 184 (398)
..|++++|+..|..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 888888886544332
Q ss_pred -----------------------------------Hhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 185 -----------------------------------LSI---SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 185 -----------------------------------l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
+.. .|....++..+|.++..+|++++|+..|+++++++|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 211 234445667777777777888888888888888777777
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
..|..+|.++...|++++|+..|++++..+|+ ++.+++.+|.++...|++++|+.+|++++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~----------------- 427 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSID----------------- 427 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 77777888887888888888888888887777 777788888888888888888888777754
Q ss_pred ccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 307 GDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 307 ~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.+|. ..+..+|.++..+|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++.++
T Consensus 428 ----------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 428 ----------LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred ----------cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4454 4555699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHH
Q 015907 385 PEKVKA 390 (398)
Q Consensus 385 p~~~~~ 390 (398)
|++...
T Consensus 498 p~~~~~ 503 (615)
T TIGR00990 498 KETKPM 503 (615)
T ss_pred Cccccc
Confidence 875443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=228.54 Aligned_cols=261 Identities=16% Similarity=0.087 Sum_probs=229.7
Q ss_pred HhHHHHHHhhcchhhc---CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYD---APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~---~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
+.+++|++.|+.++.. .|.....+.. +|.+ .| ++.|+..|++++.+. |.....|+.+|.++..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~-lg~~~~~~g~~~eA~~~~~kal~l~---------P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNL-RGTFKCLKGKHLEALADLSKSIELD---------PRVTQSYIKRASMNLE 377 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHH
Confidence 4678899999998865 4666666666 7777 67 999999999999999 9999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHH-H
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLG-K 328 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la-~ 328 (398)
+++...|. ++.++..+|.++...|++++|+..|++++...+.... .... ..+...+ .
T Consensus 458 ~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~--------------------~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 458 RCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP--------------------MYMNVLPLINKALA 516 (615)
T ss_pred HHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc--------------------ccccHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999775432210 1111 1122233 3
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 329 AYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 329 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
.+...|++++|+.++++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3445799999999999999999999999999999999999999999999999999887544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=219.16 Aligned_cols=289 Identities=14% Similarity=0.012 Sum_probs=245.8
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.....++..+|..+++.++...|.+++.++. +|++ .| ++.|+..|++++.+. |.++.++..+|.++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~---------P~~~~a~~~la~~l 120 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVN---------VCQPEDVLLVASVL 120 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHH
Confidence 3446788899999999999999999999988 8877 77 999999999999999 99999999999999
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888876654 47788999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc------ccccccccC
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD------KKETEPQKV 317 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~ 317 (398)
+++++..+|.........++.++...|++++|+..+++++...+..+. +.+....++... ..+.+++..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998888876424445566678888889999999999888776554433 333444455442 345566777
Q ss_pred CCchH--HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 318 DPIQV--ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 318 ~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+|.+. +..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 77754 4459999999999999999999999999999999999999999999999999999999999999876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=203.85 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=236.2
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCC---------------------
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPS--------------------- 150 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~--------------------- 150 (398)
-.-+..+|+..|..+-...++-. +....+|.. ++ +++|..+|+.+-...++.-.
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 44456789999998655666555 333336666 66 99999999998877654211
Q ss_pred ----CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 151 ----GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 151 ----~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
....|..|++|-.+|.|+..+++++.|+++|+++++++|...-+|..+|.-+....+++.|..+|++++..+|.+-
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 3355889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.+|+.+|.+|.++++++.|+-.|++|++++|. +......+|.++.+.|+.++|+.+|++|..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----------------- 551 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH----------------- 551 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----------------
Confidence 99999999999999999999999999999999 999999999999999999999999999954
Q ss_pred ccccccccccCCCchH--HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 307 GDKKETEPQKVDPIQV--ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.+|.++ .+..|.++...+++++|+..++++-++-|+...+++.+|.+|.++|+.+.|+..|.-|..++
T Consensus 552 ----------ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 552 ----------LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred ----------cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 555554 45599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHH
Q 015907 385 PEKVKA 390 (398)
Q Consensus 385 p~~~~~ 390 (398)
|.-.++
T Consensus 622 pkg~~i 627 (638)
T KOG1126|consen 622 PKGAQI 627 (638)
T ss_pred Cccchh
Confidence 976553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=211.59 Aligned_cols=283 Identities=10% Similarity=0.016 Sum_probs=209.1
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..++.++|+..|++++..+|+++..+.. +|.+ .| ++.|+..|.+++.+. |.++.++..++.++...
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~-la~~l~~~g~~~~Ai~~l~~Al~l~---------P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPEDVLL-VASVLLKSKQYATVADLAEQAWLAF---------SGNSQIFALHLRTLVLM 157 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHC
Confidence 5678899999999999999999998877 7777 67 999999999999998 99999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
|++++|+..+++++...|+++.++..++ .+...|++++|+..++++++..|. .......++.++...|++++|+..|+
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998888888877765543 355666666666666666665442 22233344555566666666666666
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCC
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDE----AVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDP 319 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~ 319 (398)
+++..+|+ ++.++..+|.++...|++++ |+..|++++...+.... +.+....++... ..+++++..+|
T Consensus 237 ~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 237 SALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 66666665 56666666666666666654 55666555555444322 222223333332 22333445556
Q ss_pred ch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 320 IQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 320 ~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.+ ++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 54 556699999999999999999999999999998888888999999999999999999999999987543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=225.85 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=237.0
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH-----------
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA----------- 159 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~----------- 159 (398)
...+++++|+..|++++..+|++++.+.. +|.+ .| +++|+..|++++... |.+..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~-Lg~~~~~~g~~~eA~~~l~~Al~~~---------p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGA-LGQAYSQQGDRARAVAQFEKALALD---------PHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCccchhHHHHHHHhh
Confidence 35578899999999999999999998877 8887 77 999999999999887 54321
Q ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--
Q 015907 160 ---GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE-- 234 (398)
Q Consensus 160 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-- 234 (398)
....+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 223557888999999999999999999999999999999999999999999999999999999998776655544
Q ss_pred ----------------------------------------HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 235 ----------------------------------------VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 235 ----------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
++...|++++|+..|+++++++|+ ++.+++.+|.+|...
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344679999999999999999999 999999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCch-----hhhcccccc-----------------------------------------
Q 015907 275 KKPDEAVQFLLASRERLSTGKSDDL-----SVKDGRSGD----------------------------------------- 308 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~----------------------------------------- 308 (398)
|++++|+..++++++..+..+.... ....++...
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998876665543110 000000000
Q ss_pred -ccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 309 -KKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 309 -~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
......+...|. ..+..+|.++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..+++++...|
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 000011122333 35556999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHH
Q 015907 386 EKVKALVD 393 (398)
Q Consensus 386 ~~~~~~~~ 393 (398)
+++.++..
T Consensus 669 ~~~~~~~~ 676 (1157)
T PRK11447 669 DSLNTQRR 676 (1157)
T ss_pred CChHHHHH
Confidence 98876654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-23 Score=193.41 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=228.4
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.....++.++|+..|++++..+|++...+.. +|.+ .| ++.|+..++.++.... . ........+..+|.++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~~----~-~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLA-LGNLFRRRGEVDRAIRIHQNLLSRPD----L-TREQRLLALQELGQDY 117 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHcCcHHHHHHHHHHHhcCCC----C-CHHHHHHHHHHHHHHH
Confidence 3446678889999999999999998887766 7766 67 9999999999886430 0 0011235788999999
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-----DVFRLLGEVKYELKDYE 243 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~ 243 (398)
...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999887653 35678899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--- 320 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (398)
+|+.+|+++++.+|+ ...++..+|.++...|++++|+..++++... +|.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------~p~~~~ 249 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQ---------------------------DPEYLS 249 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------ChhhHH
Confidence 999999999999999 8999999999999999999999999998652 233
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
..+..++.+|...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++....
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 34455899999999999999999999999997754 48999999999999999999999999999987544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-24 Score=216.24 Aligned_cols=284 Identities=21% Similarity=0.190 Sum_probs=161.5
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
++..+|+..++.++...|.++..+.. +|.+ .| ++.|+..|..++... |.++..+..+|.++...|+
T Consensus 581 ~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKN 650 (899)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCC
Confidence 34445555555555545544444444 4443 34 555555555555444 4555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+..|+++++.+|++..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchH--HH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQV--EL 324 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 324 (398)
...|+ + ..+..++.++...|++++|+..+++++...+..+. +.+....++... ..+.+.+...|.+. +.
T Consensus 731 ~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 731 KRAPS-S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred hhCCC-c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55554 2 44455555555555555555555555444333322 222222333332 23344444555543 33
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++.++...|+ .+|+.++++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.++.++
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 37777777777 6677777777777777777777888888888888888888888888888877776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=214.67 Aligned_cols=284 Identities=20% Similarity=0.198 Sum_probs=148.9
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
+.++|++.|+.++...|.+...+.. ++.+ .| .++|...+.+++... |.+...+..++..+...|++
T Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILA-LAGLYLRTGNEEEAVAWLEKAAELN---------PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------ccchhHHHHHHHHHHHCCCH
Confidence 3444444444444444444444333 3333 33 444444444444444 44444444555555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+..+++++...|.++.+|..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCc-hHHHHH
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPI-QVELLL 326 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l 326 (398)
.+|+ +..++..++.++...|++++|+..++.+....+..+. +.+....++... ..+..++...|. .....+
T Consensus 664 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 742 (899)
T TIGR02917 664 LKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL 742 (899)
T ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHH
Confidence 5555 4555555555555555555555544444333222211 111112222222 223333333333 233446
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++..|+++.++.+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777776666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=187.33 Aligned_cols=270 Identities=15% Similarity=0.121 Sum_probs=233.4
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHH---HHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGL---VFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~---a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
+.+.....++.+..+++.+++..+|-++..+.+.++-+........+|.. .+... |..+..|+..|.-
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---------P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---------PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---------CCCCcchhhHHHH
Confidence 33344566788899999999999999999987767744223333333433 34444 8888999999999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|..++++.-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG 327 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 327 (398)
+|.+|+.+.|. ++-++..+|.+.+..+.|.+|..+|+.++...+.... -...-.-.+.++|
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~------------------e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN------------------EKIFWEPTLNNLG 462 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc------------------cccchhHHHHhHH
Confidence 99999999999 9999999999999999999999999998855443311 0011112355699
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999984
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=195.35 Aligned_cols=226 Identities=13% Similarity=0.145 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----------------------
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI----------------------- 187 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------- 187 (398)
..+|+..|.+.-... ++...+...+|..|++.++|++|..+|+.+-++
T Consensus 335 ~~~A~~~~~klp~h~---------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH---------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHhhHHhc---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 556666666633333 667788899999999999999999999988554
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 188 -----------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 188 -----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
+|+.|+.|..+|.||..+++++.|+++|++++.++|....+|..+|.=+....+++.|..+|+.++..+
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH--HHHHHHHhCC
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL--LLGKAYSDGG 334 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g 334 (398)
|. +..+|+++|.+|.++++++.|.-.|++| +.++|..... .+|.++.+.|
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA---------------------------~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKA---------------------------VEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhh---------------------------hcCCccchhHHhhhhHHHHHhh
Confidence 99 9999999999999999999999999999 5577765443 4999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 335 RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 335 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+.++|+.+|++|+.++|.++-..+..|.++..++++++|...+++..++.|+..-++.-
T Consensus 538 ~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=211.31 Aligned_cols=257 Identities=14% Similarity=0.071 Sum_probs=209.2
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH----
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE---- 165 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la---- 165 (398)
....++.++|+..|++++..+|+++..+.. +|.+ .| +++|+..|++++.+. |.+..++..++
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~-Lg~~~~~~g~~~eA~~~y~~aL~~~---------p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLG-LGDVAMARKDYAAAERYYQQALRMD---------PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHH
Confidence 345678899999999999999999888766 7777 77 999999999999988 66665554443
Q ss_pred --------------------------------------HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 166 --------------------------------------LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 166 --------------------------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
..+...|++++|+..|+++++.+|+++.+++.+|.+|...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 445567888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH-----------------------------------
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS----------------------------------- 252 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------- 252 (398)
+++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 999999999999888888888877777777777777776665542
Q ss_pred -----HhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHH
Q 015907 253 -----TMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELL 325 (398)
Q Consensus 253 -----l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 325 (398)
+...|. ++..+..+|.++...|++++|+..|++++. .+|. +++..
T Consensus 591 eA~~~l~~~p~-~~~~~~~La~~~~~~g~~~~A~~~y~~al~---------------------------~~P~~~~a~~~ 642 (1157)
T PRK11447 591 EAEALLRQQPP-STRIDLTLADWAQQRGDYAAARAAYQRVLT---------------------------REPGNADARLG 642 (1157)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------hCCCCHHHHHH
Confidence 223566 667777788888888888888888877755 3343 55666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
++.+|...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++...|+++
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 899999999999999999999998999999999999999999999999999999998876654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=200.20 Aligned_cols=248 Identities=14% Similarity=0.035 Sum_probs=209.7
Q ss_pred HHHhhcchhhcCCC--chhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHH
Q 015907 103 EIKEFGPIDYDAPI--ETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTR 177 (398)
Q Consensus 103 A~~~~~~~~~~~p~--~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 177 (398)
+...+..++...|. ++..++. +|.+ .| ..+|+..|.+++... |+.. ....+|..+...|++++|
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~-LG~~l~~~~~~eAi~a~~~Al~~~---------Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNR-LAKCYRDTLPGVALYAWLQAEQRQ---------PDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHH-HHHHHHhCCcHHHHHHHHHHHHhC---------CchH-HHHHHHHHHHHCCCHHHH
Confidence 44555566667777 7777777 8888 55 888999899988877 7643 356667777889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 257 (398)
+..|++++...|. ...+..+|.++...|++++|+.+++++++..|.....+..++......|++++|+..|+++++.+|
T Consensus 529 i~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 529 LAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 9999998777555 456788899999999999999999999999998887777777777778999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCC
Q 015907 258 DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGR 335 (398)
Q Consensus 258 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~ 335 (398)
+ ..++..+|.++.+.|++++|+..|++++. .+|. .++..+|.++...|+
T Consensus 608 ~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~---------------------------l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 608 S--ANAYVARATIYRQRHNVPAAVSDLRAALE---------------------------LEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------hCCCCHHHHHHHHHHHHHCCC
Confidence 5 78899999999999999999999999865 3344 456669999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+.
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 99999999999999999999999999999999999999999999999999886654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=173.73 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.-..|.-|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+-.+|+.||+.|..++
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 34467778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
.+.-|+-+|++++...|. +...|..||.+|.+.++.++|+.+|.++... .....
T Consensus 413 Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~-------------------------~dte~ 466 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL-------------------------GDTEG 466 (559)
T ss_pred chHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc-------------------------cccch
Confidence 999999999999999999 9999999999999999999999999998662 22234
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLIS-------SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.++..+|.+|.+.++..+|..+|++.++ ..|....+...|+.-+.+.+++++|..+..+++.-++...++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 6777799999999999999999999998 456667788889999999999999999999888876654443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=174.92 Aligned_cols=229 Identities=12% Similarity=0.041 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
.+.++..+.+++.... ...+..+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++
T Consensus 42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6777888888875431 00124467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|+..|+++++++|++..++.++|.++...|++++|+..|++++..+|+ ++..... ..+....+++++|+..+.+....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998 7642222 22345678899999999765431
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH--HHHHH----HHHHhCCCChHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA--VAVYD----RLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~----~al~~~p~~~~~~~~la~~~ 364 (398)
.++ +.+. .+.++...|++.++ +..+. ..+++.|...++|+++|.++
T Consensus 195 --------------------------~~~-~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 195 --------------------------LDK-EQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred --------------------------CCc-cccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 122 2232 34555556665443 32222 22355677788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC-CChHHHHHh
Q 015907 365 KENGKVGDAERMFIQARFFAP-EKVKALVDQ 394 (398)
Q Consensus 365 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 394 (398)
..+|++++|+.+|++++..+| ++.+....+
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 999999999999999999997 666655543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-22 Score=196.38 Aligned_cols=252 Identities=8% Similarity=-0.021 Sum_probs=225.0
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
++..+|+..|.+.+...|+... .++++.. .| ++.|+..|+++.... |. ...++.+|.++...|+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~--~L~lA~al~~~Gr~eeAi~~~rka~~~~---------p~-~~a~~~la~all~~Gd 557 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQ--HRAVAYQAYQVEDYATALAAWQKISLHD---------MS-NEDLLAAANTAQAAGN 557 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHH--HHHHHHHHHHCCCHHHHHHHHHHHhccC---------CC-cHHHHHHHHHHHHCCC
Confidence 5777899999999999997654 3335553 77 999999999986544 44 3457889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..|++++
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999888888887778889999999999999999996 8999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG 333 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 333 (398)
.++|+ ++.++.++|.++...|++++|+..|+++++.. ++...++.++|.++...
T Consensus 637 ~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-------------------------P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 637 ELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-------------------------PDDPALIRQLAYVNQRL 690 (987)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHC
Confidence 99999 99999999999999999999999999996632 22235667799999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
|++++|+.+|++++++.|++..+....|.+.....+++.|.+.+.++..++|+..
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999999999999999999999999999999865
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=165.26 Aligned_cols=303 Identities=13% Similarity=0.138 Sum_probs=256.7
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSP 155 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p 155 (398)
...+....++.......++++..|+..|..++..+|++..++.. .+.. .| ...|+.-+.+++.+. |
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifr-RaT~yLAmGksk~al~Dl~rVlelK---------p 103 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFR-RATVYLAMGKSKAALQDLSRVLELK---------P 103 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHH-HHHHHhhhcCCccchhhHHHHHhcC---------c
Confidence 34566778888888889999999999999999999999888776 5555 78 888999999999999 9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---------------ALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
+...+....|.+++.+|++++|+..|..++..+|.+.. .+......+...|++..|+++..++++
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999996532 233344456677999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc-h
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD-L 299 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 299 (398)
+.|.+...+...+.||...|++..|+..++.+-++..+ +.+.++.+..+++..|+.+.++...++++++.+...... .
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 99999999999999999999999999999999999999 999999999999999999999999999988877764410 0
Q ss_pred hhhccc-----------ccc-------ccccccccCCCchHHH------HHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 300 SVKDGR-----------SGD-------KKETEPQKVDPIQVEL------LLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 300 ~~~~~~-----------~~~-------~~~~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
+..+.. .+. +..+..+..+|....+ .+..|+..-+++.+|+..+.+++..+|++..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 111100 011 2233445566653222 2788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
++...+..|.....|+.|+..|++|.+.+|++..+.-.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999999999999999877654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=171.75 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=204.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| .-.|...|..+|.+. |.+...|..++.+|...++.++-...|.++..++|+++++|+..|.+++-+++
T Consensus 339 ~g~~~~a~~d~~~~I~l~---------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLD---------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred cCCchhhhhhHHHHHhcC---------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 67 888999999999999 88888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.-|++++.++|++...+..++.+.+++++++++...|+.++...|. .++++...|.++..+++++.|++.|..+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS-DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
+.+-+.... +-.+ ..++...|.+.. -.+++.+|+.+++++++++|....++..+|.+..+
T Consensus 489 i~LE~~~~~------------------~~v~-~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 489 IELEPREHL------------------IIVN-AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred Hhhcccccc------------------cccc-chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 775443200 0011 122333333332 23899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCC
Q 015907 367 NGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 367 ~g~~~~A~~~~~~al~~~p~ 386 (398)
+|+.++|+++|++++.+...
T Consensus 550 ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=168.25 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.++...|..++-.|++..|...|+.++.++|.+...|..+|.+|....+.++-...|.++..++|.++++|+..|.+++-
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 34444555555666666666666666777666666677777777777777777777777777777777777777777777
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
++++++|+..|++++.++|+ +..++..++.+.+++++++++...|+.+.+.+|..
T Consensus 407 L~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------------------------ 461 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------------------------ 461 (606)
T ss_pred HHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------------------
Confidence 77777777777777777777 77777777777777777777777777776644432
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIIL-KENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
.+++...|.++..++++++|++.|..++++.|. ++..+...|.+. ...+++..|+.++.+|++++|....++
T Consensus 462 -~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 462 -PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred -chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence 356666788888888888888888888888777 555555555443 344777788888888888888776666
Q ss_pred HHh
Q 015907 392 VDQ 394 (398)
Q Consensus 392 ~~l 394 (398)
..+
T Consensus 541 ~tl 543 (606)
T KOG0547|consen 541 ETL 543 (606)
T ss_pred HHH
Confidence 544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=181.46 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=199.3
Q ss_pred Cchhhhhhhcchh-hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH
Q 015907 116 IETEKKTIGLGTK-IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST 193 (398)
Q Consensus 116 ~~~~~~~~~lg~~-~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 193 (398)
++++.+..|.-++ .| +.+|+..|+.++..+ |.+..+|..||.++.+.++-..|+..++++++++|++.+
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd---------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle 354 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD---------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE 354 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhC---------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH
Confidence 3555666666566 77 999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL-------LGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLR 265 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 265 (398)
++..||..|...|.-.+|+.++.+.+...|........ ...-......+..-.+.|-.+....|. .++++..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 99999999999999999999999999988754221110 000001112244556677777777773 3899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVY 343 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~ 343 (398)
.||.+|...|+|++|+++|+.+ +...|.+..+| ||-.+....+.++|+..|
T Consensus 435 ~LGVLy~ls~efdraiDcf~~A---------------------------L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAA---------------------------LQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHH---------------------------HhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 9999999999999999999999 44677776555 999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++|+++.|.+.++++++|.+|+.+|.|++|+.+|-.||.+.+.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999998765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=183.39 Aligned_cols=216 Identities=9% Similarity=-0.054 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc---------cHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN---------VLQTRLKKYEETLSISPKDSTALEGAAVT 201 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 201 (398)
+..|+..|++++.++ |+++.+|..+|.++...+ ++++|+..++++++++|+++.++..+|.+
T Consensus 277 ~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~ 347 (553)
T PRK12370 277 LQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999999 999999999998877543 48999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|. ++..+..++.++...|++++|+
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8877777777788899999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
.++++++...+ .+....+.++|.++...|++++|...+.++....|....++..++
T Consensus 427 ~~~~~~l~~~~------------------------p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 427 RLGDELRSQHL------------------------QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHhcc------------------------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99988755211 112345567999999999999999999999998999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 015907 362 IILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~al~ 382 (398)
.+|...|+ +|...+++.++
T Consensus 483 ~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHhccHH--HHHHHHHHHHH
Confidence 99998885 66666666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=174.77 Aligned_cols=226 Identities=15% Similarity=0.084 Sum_probs=200.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLA 203 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~ 203 (398)
.| ++.|+..|.+++..+ |.+..++..+|.++...|++++|+..+++++...+.. ..++..+|.+|.
T Consensus 48 ~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD---------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred cCChHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 57 999999999999998 9999999999999999999999999999998854333 357889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH-----HHHHHHHHHHHHcCCch
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF-----EVLRGLTNALLAAKKPD 278 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~la~~~~~~~~~~ 278 (398)
..|++++|+..|+++++..|.+..++..++.++...|++++|++.+++++...|. +. ..+..+|.++...|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999998876 42 25678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHHH
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRGY 357 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 357 (398)
+|+.+|+++++.. .+....+..+|.++...|++++|+..++++++.+|.+ ..++
T Consensus 198 ~A~~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 198 AARALLKKALAAD-------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHHHHHHHHhHC-------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 9999999986632 2223466679999999999999999999999988876 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..++.+|...|++++|+..+++++...|+...
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 89999999999999999999999999998744
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=187.56 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=216.9
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
....++..+|+..|++++...|.++..... ++.+ .| .++|+..+.+++... |.++. +..+|.++.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-la~~l~~~g~~~eA~~~l~~~l~~~---------P~~~~-~~~la~~l~ 127 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRG-LILTLADAGQYDEALVKAKQLVSGA---------PDKAN-LLALAYVYK 127 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHH-HHHHHHHHH
Confidence 345677889999999999999998887765 6666 67 999999999999988 99999 999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH----------------------------------
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL---------------------------------- 215 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---------------------------------- 215 (398)
..|++++|+..|+++++..|+++.++..++.++...+..++|+..+
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 9999999999999999999999999999998887777766555433
Q ss_pred ------------HHHHHhCCCCHHH-------HHH-HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 216 ------------QDLAKEKPSDPDV-------FRL-LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 216 ------------~~al~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
+++++..|.++.. ... ++ .+...|++++|+..|+++++..|.....+...++.++...|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 3444332322211 111 33 34577899999999999998864312234444688999999
Q ss_pred CchHHHHHHHHHHHHhcCCCC------Cc---hhhhcccccc--ccccccccC-------------CCch----HHHHHH
Q 015907 276 KPDEAVQFLLASRERLSTGKS------DD---LSVKDGRSGD--KKETEPQKV-------------DPIQ----VELLLG 327 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~------~~---~~~~~~~~~~--~~~~~~~~~-------------~~~~----~~~~la 327 (398)
++++|+.+|++++...+..+. .. .....++..+ ..+...... .|.+ +...++
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 999999999887764433311 11 1112233332 112222222 2332 345589
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|++..+++.+
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=177.73 Aligned_cols=256 Identities=20% Similarity=0.177 Sum_probs=119.0
Q ss_pred HHHHHHHHHhHHHHHHhhcchh-hc-CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPID-YD-APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~-~~-~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
.+.-....+++++|++++.+.+ .. .|+++..+.. ++.+ .| .+.|+..|++++..+ +..+..+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~-~a~La~~~~~~~~A~~ay~~l~~~~---------~~~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRL-LADLAWSLGDYDEAIEAYEKLLASD---------KANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc---------ccccccccc
Confidence 3444557788899999996654 44 4778887777 7765 67 999999999999888 777777777
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccC
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--PSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 241 (398)
++.. ...+++++|+..++++.+.. .++..+..+..++...++++++...++++.... +.++.+|..+|.++...|+
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 7777 79999999999999998876 457778888899999999999999999987655 6778899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
+++|+.+|+++++.+|+ +..++..++.++...|+++++...+....+..+ ....
T Consensus 162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-------------------------~~~~ 215 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAP-------------------------DDPD 215 (280)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-------------------------TSCC
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-------------------------CHHH
Confidence 99999999999999999 999999999999999999998888877766322 1234
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|..++++++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56669999999999999999999999999999999999999999999999999999998753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=164.00 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC----------------------------------CHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK----------------------------------DSTALEGAAV 200 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------------------------~~~~~~~la~ 200 (398)
|.....-...|.+.+...++++|+..|+...+.+|- .++....+|+
T Consensus 259 ~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaN 338 (559)
T KOG1155|consen 259 PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIAN 338 (559)
T ss_pred CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehh
Confidence 344444444555555555555555555555555553 3444556677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
.|...++.++|+.+|+++++++|....+|..+|.-|.++++...|++.|++|++++|. +..+|++||.+|.-++-+.=|
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHH
Confidence 7888899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 360 (398)
+-+|+++.. ..++....|..+|.||.+.++.++|+.+|.+++........+++.+
T Consensus 418 LyYfqkA~~-------------------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 418 LYYFQKALE-------------------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred HHHHHHHHh-------------------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999965 3333344555599999999999999999999999988889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 015907 361 GIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|.+|.++++..+|..+|++.++.
T Consensus 473 akLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999983
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=180.28 Aligned_cols=247 Identities=11% Similarity=-0.054 Sum_probs=206.8
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh------------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK------------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~------------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
....+|+..|++++..+|+++..+.. ++.+ .+ ++.|...+++++.++ |+++.++..+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~-La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld---------P~~~~a~~~l 344 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCA-LAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD---------HNNPQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC---------CCCHHHHHHH
Confidence 44678999999999999999887654 5543 23 689999999999999 9999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877777777888999999
Q ss_pred HHHHHHHHHhhC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--h
Q 015907 245 SAAAYRVSTMVS-KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--Q 321 (398)
Q Consensus 245 A~~~~~~al~~~-p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 321 (398)
|+..+++++... |+ ++.++..+|.++...|++++|...+.+... ..|. .
T Consensus 425 A~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---------------------------~~~~~~~ 476 (553)
T PRK12370 425 AIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTKEIST---------------------------QEITGLI 476 (553)
T ss_pred HHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---------------------------ccchhHH
Confidence 999999999886 66 888999999999999999999999977633 2233 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
....++..|...|+ +|...+++.++.......-......+|.-.|+.+.+..+ +++.+.+.
T Consensus 477 ~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 34448888888884 777777776654333332333488888889998888887 77665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=158.43 Aligned_cols=241 Identities=14% Similarity=0.059 Sum_probs=220.5
Q ss_pred hhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHH
Q 015907 121 KTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALE 196 (398)
Q Consensus 121 ~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 196 (398)
|...+|.| +| +..|...+...+... ..++.+..++.+|.+..+...|+..|.+.++..|.+...+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~----------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF----------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC----------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh
Confidence 44557777 78 999999999988665 45678889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
.+++++..++++++|.++|+.+++.+|.+.++.--+|.-|+..++++-|+.+|++++++.-. +++.+.++|.+.+..++
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 99999999999999999999999999999999988999999999999999999999999988 99999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHH
Q 015907 277 PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRG 356 (398)
Q Consensus 277 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 356 (398)
++-++..|++++...... -...++|+++|.+....|++.-|..+|+-++..++++.++
T Consensus 374 ~D~~L~sf~RAlstat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred hhhhHHHHHHHHhhccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 999999999997754322 2235899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 357 YLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+.+||.+-.+.|+.++|..++..+-...|+-.+...|+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 99999999999999999999999999999987776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=158.01 Aligned_cols=205 Identities=20% Similarity=0.185 Sum_probs=185.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+.....++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVS--KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
++...|++++|+..|++++... +. ....+..+|.++...|++++|...+.+++...+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------- 166 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-PARSLENAGLCALKAGDFDKAEKYLTRALQIDP-------------------- 166 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------
Confidence 9999999999999999999854 34 567899999999999999999999999866322
Q ss_pred ccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 313 EPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
.....+..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 167 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 167 -----QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 22345667999999999999999999999999898999999999999999999999999888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=168.55 Aligned_cols=307 Identities=17% Similarity=0.154 Sum_probs=244.5
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSP 155 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p 155 (398)
...+....+..+.....+++.++|.+++.++++.+|.++.++.. +|.+ .| .+.+..++-.|..++ |
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~t-L~~IyEqrGd~eK~l~~~llAAHL~---------p 204 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYT-LGEIYEQRGDIEKALNFWLLAAHLN---------P 204 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHH-HHHHHHHcccHHHHHHHHHHHHhcC---------C
Confidence 45566777777777778899999999999999999999999999 9999 88 999999999999999 9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-----DVFR 230 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~ 230 (398)
.+...|..++....+.|++.+|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|... ..-.
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998321 2233
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-------------
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS------------- 296 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 296 (398)
..+..+...++.+.|++.++.++....+ ...+.+..++.++.....++.|...+......-....+
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 4567778888889999999999984322 14456778899999999999999988665541111100
Q ss_pred -----------Cchhh---h--cccccc----cc----c-ccc-ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 297 -----------DDLSV---K--DGRSGD----KK----E-TEP-QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 297 -----------~~~~~---~--~~~~~~----~~----~-~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
.++.. . +-.+.. +. + ... ...+..+.+..++.+|...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 01111 1 111111 00 0 000 011112445559999999999999999999998755
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 351 PN-DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 351 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
+. +..+|+.+|.||..+|.+++|++.|++++.++|++.++.+.+.+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 43 36799999999999999999999999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=181.37 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=226.0
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
.-.++.++|++++.++....|.....+.. ++.. .| +.+|...|++++.+. |.++.++..++.++..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~-lA~~~~~~g~~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAA-VAVAYRNLKQWQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 35678889999999998877777766665 6655 77 999999999999999 9999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH----
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA---- 246 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---- 246 (398)
.|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..+.|+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999887777665544
Q ss_pred ------------------------------------------HHHHHHHhhC---CCCCH---HHHHHHHHHHHHcCCch
Q 015907 247 ------------------------------------------AAYRVSTMVS---KDINF---EVLRGLTNALLAAKKPD 278 (398)
Q Consensus 247 ------------------------------------------~~~~~al~~~---p~~~~---~~~~~la~~~~~~~~~~ 278 (398)
..++.+++.. |...+ .++.....++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4444444332 22111 12222123446779999
Q ss_pred HHHHHHHHHHHHhcCCCC------Cchhhhcccccc--ccccccccCCCch------HHHHHHHHHHhCCChHHHHHHHH
Q 015907 279 EAVQFLLASRERLSTGKS------DDLSVKDGRSGD--KKETEPQKVDPIQ------VELLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~ 344 (398)
+|+..|+++++..+..|. +.+....++.+. ..+.+.+..+|.. ....++.++...|++++|+..++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999887765433332 234444455444 2334444444432 34447778899999999999999
Q ss_pred HHHHhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 345 RLISSYPN---------------DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 345 ~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++....|. ...++..++.++...|++++|+..+++++...|+++.++..+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99988763 1357788999999999999999999999999999998887753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=158.90 Aligned_cols=235 Identities=13% Similarity=0.072 Sum_probs=178.2
Q ss_pred HHHHHhhcchhhcCCCc----hhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 101 AEEIKEFGPIDYDAPIE----TEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~----~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
+.++..+.+++...|.. +..+.. +|.+ .| .+.|+..|.+++.+. |+++.+|+.+|.++...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~-~g~~~~~~g~~~~A~~~~~~Al~l~---------P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYE-RGVLYDSLGLRALARNDFSQALALR---------PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHCC
Confidence 34566666677544422 333444 7777 77 999999999999999 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
++++|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..|.++
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999874222 223345678899999999887
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh
Q 015907 253 TMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD 332 (398)
Q Consensus 253 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 332 (398)
+...+. . .|. .+.++...|+..++ ..+..+.+.+...+. +.....++++++|.++..
T Consensus 192 ~~~~~~-~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~------------------l~~~~~ea~~~Lg~~~~~ 248 (296)
T PRK11189 192 YEKLDK-E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE------------------LAERLCETYFYLAKYYLS 248 (296)
T ss_pred HhhCCc-c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH------------------HHHHHHHHHHHHHHHHHH
Confidence 755433 2 222 45666677887665 355554443322211 111223578889999999
Q ss_pred CCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Q 015907 333 GGRVSDAVAVYDRLISSYP-NDFRGYLAKGIILKENGK 369 (398)
Q Consensus 333 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 369 (398)
.|++++|+.+|+++++.+| ++++..+.+..+....++
T Consensus 249 ~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 249 LGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997 666666666665554433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=168.61 Aligned_cols=306 Identities=14% Similarity=0.094 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCC--------------
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLP-------------- 149 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~-------------- 149 (398)
+-.++-+...+++..|+.+|+.++..+|.-.....+|+|.| +| .+.|+..|.+++.+++..-
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFN 247 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc
Confidence 33445555778888999999998888888777777778887 66 7888888888887764200
Q ss_pred --------------CCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 015907 150 --------------SGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 150 --------------~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~ 212 (398)
.-...+.+|.++..++.-++..|+|..+..+...++...-.. .+.++.+|.+|..+|+|++|.
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 011235666666666666677777777777777666654322 345777777777777777777
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC----CchHHHHHHHHH
Q 015907 213 SLLQDLAKEKPSD-PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK----KPDEAVQFLLAS 287 (398)
Q Consensus 213 ~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a 287 (398)
.+|.++++.+|++ .-.++.+|.+|...|+++.|+.+|++++...|+ +.++...||.+|...+ ..+.|..++.++
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 7777777777666 556667777777777777777777777777777 6777777777776554 345566666555
Q ss_pred HHHhcCCCCCchhh-----------hcccccc--ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh-----
Q 015907 288 RERLSTGKSDDLSV-----------KDGRSGD--KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS----- 349 (398)
Q Consensus 288 ~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 349 (398)
.+..+.+.++.+.. .+.-+.. ..+......-|..+..++|..++..|++.+|...|..++..
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 55443332211111 1100000 11222223345556666777777777777777777766654
Q ss_pred CCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 350 YPN-----DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 350 ~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+++ +....+++|.++..+++++.|.+.|...+...|...++++.+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 111 122466777777777777777777777777777776666655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-19 Score=140.61 Aligned_cols=207 Identities=17% Similarity=0.077 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
..+...+|..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 238 ELKDYEGSAAAYRVSTMV--SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
.+|++++|...|++++.. .|. ...++.++|.|..+.|+++.|..+|+++++..+..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--------------------- 172 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--------------------- 172 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---------------------
Confidence 999999999999999974 344 56799999999999999999999999996633221
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
......++..+...|++..|..+++......+-..+.+.....+-...|+.+.+-.+=.+.....|...+.
T Consensus 173 ----~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 173 ----PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ----ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 23444599999999999999999999998888888888888889999999999999988888999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-19 Score=140.41 Aligned_cols=174 Identities=18% Similarity=0.150 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|+ +.+++++.|..+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 3578889999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
+.+|++++|...|++++.. | .-..|.+.+.++|.|..+.|+.+.|..+|+++++.+|
T Consensus 114 C~qg~~~eA~q~F~~Al~~-P----------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-P----------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-C----------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 9999999999999998651 1 1234567888899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 352 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+.+.....++..+++.|++-.|..++++.....+-..+
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 99999999999999999999999999988776654443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=152.81 Aligned_cols=265 Identities=15% Similarity=0.119 Sum_probs=224.3
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc---HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG---VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g---~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
+-.....+.++.|++++......+..-..+-...+-.+ +| +..|..+-..++.++ .-++.+..+.
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---------ryn~~a~~nk 496 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---------RYNAAALTNK 496 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---------ccCHHHhhcC
Confidence 33344566777787777655444332222211112222 44 788889999999888 7888899999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
|.+.+..|++++|.+.|.+++..+..-.++++++|..+..+|+.++|+++|-++-.+--++.++++.++.+|..+.+..+
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 99999999999999999999999888899999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QV 322 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 322 (398)
|++++-++..+-|+ ++.++..||.+|-+.|+-.+|.+++-... ...|. +.
T Consensus 577 aie~~~q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsy---------------------------ryfp~nie~ 628 (840)
T KOG2003|consen 577 AIELLMQANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSY---------------------------RYFPCNIET 628 (840)
T ss_pred HHHHHHHhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcc---------------------------cccCcchHH
Confidence 99999999999999 99999999999999999999999985543 34444 45
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
.-|+|..|....-+++|+.+|+++--+.|+...-....+.|+.+.|+|+.|.+.|+..-...|.+.+.+-
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 5679999999999999999999999999999888889999999999999999999999999999877543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=145.89 Aligned_cols=207 Identities=12% Similarity=0.104 Sum_probs=193.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 241 (398)
..+|.||++.|.+.+|...|+..++..| .++.+..++.+|....++..|+..+...++..|.+...+..++.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 5689999999999999999999999875 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
+++|.++|+.+++.+|. +.++...+|.-|+-.++++-|+.+|++.++ +.....+
T Consensus 306 ~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLq-------------------------mG~~spe 359 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQ-------------------------MGAQSPE 359 (478)
T ss_pred HHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHH-------------------------hcCCChH
Confidence 99999999999999999 999999999999999999999999998877 4555667
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPN---DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+.++|.|+...++++-++..|++++....+ -.++|+++|.+....|++.-|...|+-++..+|++.++++|+.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 8888999999999999999999999986442 3789999999999999999999999999999999999999874
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=162.34 Aligned_cols=229 Identities=17% Similarity=0.216 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-STALEGAAVTLAELGDYT 209 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~ 209 (398)
++.|...|..++... |++..+++..|.+.+..++|..|+.+|.+++..+|.. ++....+|.|+..+|+.+
T Consensus 146 ~~~A~a~F~~Vl~~s---------p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS---------PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred HHHHHHHHHHHHhhC---------CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh
Confidence 456666666666666 7777777777777777777777777777777776654 445666677777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
.|+..|.++++++|.+..++..||.+-....+ +..+...+.++...+|. +|.++..|+.-++..|+|..+..+...
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 77777777777777666666666665554433 45666666666666766 677777777777777777766666666
Q ss_pred HHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHH
Q 015907 287 SRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRGYLAKGIILK 365 (398)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 365 (398)
++..... ..--.+.++++|.+|+.+|++++|..+|.+++..+|++ .-.++.+|++|.
T Consensus 296 ai~~t~~----------------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 296 AIKNTEN----------------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHhhhh----------------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 5542211 11112445556666666666666666666666666655 455666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
..|+++.|+..|++++...|++.+.+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHH
Confidence 66666666666666666666665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-18 Score=144.59 Aligned_cols=178 Identities=17% Similarity=0.129 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
.+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|. +..++..+|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
+...|++++|+..+.+++.... .......+..+|.++...|++++|...+.+++...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL-----------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc-----------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998865211 11123456669999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 351 PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
|++...+..+|.++...|++++|+.++++++...|+++..+.
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-17 Score=144.31 Aligned_cols=245 Identities=12% Similarity=0.006 Sum_probs=201.9
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc-cHHHH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN-VLQTR 177 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A 177 (398)
++.++...|+.++..... .+.|+..+.+++.++ |.+..+|..++.++...| +++++
T Consensus 35 ~~~~a~~~~ra~l~~~e~--------------serAL~lt~~aI~ln---------P~~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 35 EFREAMDYFRAVYASDER--------------SPRALDLTADVIRLN---------PGNYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred HHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHC---------chhHHHHHHHHHHHHHcchhHHHH
Confidence 444566666666554432 456667788999999 999999999999999998 68999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDY--TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+.++++++..+|++..+|...+.++...|+. ++++.++.++++.+|++..+|...+.++...|+++++++++.++|+.
T Consensus 92 L~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 92 LDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874 78899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc---CCc----hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHH
Q 015907 256 SKDINFEVLRGLTNALLAA---KKP----DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGK 328 (398)
Q Consensus 256 ~p~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 328 (398)
+|. +..+|...+.++... |.+ ++++.+..+++... ++...+|.+++.
T Consensus 172 d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-------------------------P~N~SaW~Yl~~ 225 (320)
T PLN02789 172 DVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-------------------------PRNESPWRYLRG 225 (320)
T ss_pred CCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-------------------------CCCcCHHHHHHH
Confidence 999 999999999998776 333 46777777775522 223467777888
Q ss_pred HHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCCC
Q 015907 329 AYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG------------------KVGDAERMFIQARFFAPE 386 (398)
Q Consensus 329 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~ 386 (398)
++.. .++..+|+..+.+++...|.++.++..|+.+|.... ..++|..++...-+.||=
T Consensus 226 ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 226 LFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred HHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 8877 456778999999999999999999999999998643 236788888887666665
Q ss_pred ChHHHH
Q 015907 387 KVKALV 392 (398)
Q Consensus 387 ~~~~~~ 392 (398)
...-|.
T Consensus 306 r~~yw~ 311 (320)
T PLN02789 306 RRNYWA 311 (320)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=159.58 Aligned_cols=227 Identities=17% Similarity=0.150 Sum_probs=112.6
Q ss_pred hc-HHHHHHHHHHHH-hc-cCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 015907 129 IG-VGVAVVIFGLVF-AL-GDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL 205 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~-~~-~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 205 (398)
.| ++.|..++...+ .. . |.++..|..+|......++++.|+..|++++..++.++..+..++.+ ...
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~---------~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAP---------PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 66 889999885543 33 3 77888999999999999999999999999999999999888888888 799
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS--KDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
+++++|+.++.++.+..+ ++..+..+..++...++++++...++++.... +. ++.+|..+|.++...|++++|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-SARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T--HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988664 46777788889999999999999999987654 55 788999999999999999999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
|+++++ .+|. ++...++.++...|+++++...+.......|.++..+..+|
T Consensus 169 ~~~al~---------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 169 YRKALE---------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp HHHHHH---------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred HHHHHH---------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 999966 3444 45556999999999999999999999888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 362 IILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++..+|++++|+.+|++++..+|+++.++..+
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred HHhcccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999887754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=154.04 Aligned_cols=224 Identities=16% Similarity=0.142 Sum_probs=198.1
Q ss_pred cchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHH
Q 015907 108 GPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEE 183 (398)
Q Consensus 108 ~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 183 (398)
.+++..+|..+..|.. +|.. +| ..+|..+|.++..++ |....+|...|..+...|+.++|+.+|..
T Consensus 302 h~LV~~yP~~a~sW~a-Vg~YYl~i~k~seARry~SKat~lD---------~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFA-VGCYYLMIGKYSEARRYFSKATTLD---------PTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred HHHHHhCCCCCcchhh-HHHHHHHhcCcHHHHHHHHHHhhcC---------ccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 4678899999998877 7776 88 999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----
Q 015907 184 TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---- 259 (398)
Q Consensus 184 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 259 (398)
+-++.|..-.....+|.-|..++++.-|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+..
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 9999999988899999999999999999999999999999999999999999999999999999999999543321
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChH
Q 015907 260 --NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVS 337 (398)
Q Consensus 260 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 337 (398)
-...+.+||.++.+.+.+++|+.+|++++... ....+.+..+|.+|..+|+++
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-------------------------~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-------------------------PKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-------------------------CCchhHHHHHHHHHHHhcChH
Confidence 12358999999999999999999999996622 222345556999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 338 DAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 338 ~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
.|++.|.+++.+.|++..+--.|+.+...
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999997776666655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-17 Score=150.97 Aligned_cols=277 Identities=13% Similarity=0.057 Sum_probs=213.7
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChH-HHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE-AGVVNKELSEE 169 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~-~~~~~la~~~~ 169 (398)
..++++..|.+.+....+..|+....+.+ .+.. .| .+.|..++.++.... |... .+....+.++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~ll-aA~aa~~~g~~~~A~~~l~~a~~~~---------p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIK-AAEAAQQRGDEARANQHLEEAAELA---------GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CcCchHHHHHHHHHHH
Confidence 36678889999998888877765544444 4444 67 999999999998766 6664 45556799999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHccCHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR----LLGEVKYELKDYEGS 245 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A 245 (398)
..|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++..+. ....-+...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987554443321 222222344555566
Q ss_pred HHHHHHHHhhCC----CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc--hhhhcccccc-------cccc
Q 015907 246 AAAYRVSTMVSK----DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD--LSVKDGRSGD-------KKET 312 (398)
Q Consensus 246 ~~~~~~al~~~p----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~-------~~~~ 312 (398)
.+.+..+....| + ++..+..++..+...|++++|+..++++++..+...... .......... ..++
T Consensus 245 ~~~L~~~~~~~p~~~~~-~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRH-NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHHCCHHHhC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 678888888777 4 789999999999999999999999999988777665321 2221111111 3345
Q ss_pred ccccCCCchH--HH--HHHHHHHhCCChHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 313 EPQKVDPIQV--EL--LLGKAYSDGGRVSDAVAVYD--RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 313 ~~~~~~~~~~--~~--~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
..+...|.++ .+ .+|.++.+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.+++++++..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566777766 44 39999999999999999999 57778887655 559999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=144.85 Aligned_cols=198 Identities=11% Similarity=0.061 Sum_probs=174.2
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY--EG 244 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~ 244 (398)
+...+..++|+..+.+++.++|.+..+|...+.++..+| ++++++..+.++++.+|++..+|...+.++...|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445578899999999999999999999999999999999 689999999999999999999999999999998874 78
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL 324 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (398)
++.++.++++.+|. +..+|...+.++...|+++++++++.++++. ......+|.
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-------------------------d~~N~sAW~ 180 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-------------------------DVRNNSAWN 180 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------------------------CCCchhHHH
Confidence 89999999999999 9999999999999999999999999998662 233346777
Q ss_pred HHHHHHHhC---CCh----HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 325 LLGKAYSDG---GRV----SDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 325 ~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
.++.++... |.+ ++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|+++.++
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 788887665 333 578888999999999999999999999988 4567889999999999888877654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-17 Score=138.72 Aligned_cols=271 Identities=16% Similarity=0.164 Sum_probs=210.8
Q ss_pred chhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 015907 109 PIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEET 184 (398)
Q Consensus 109 ~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 184 (398)
+....-|++...... +|-+ .| ...|+..|+++..++ |......-..|..+...|++++-...-...
T Consensus 223 e~~~~lr~NvhLl~~-lak~~~~~Gdn~~a~~~Fe~~~~~d---------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMA-LGKCLYYNGDYFQAEDIFSSTLCAN---------PDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred HhhccCCccHHHHHH-HhhhhhhhcCchHHHHHHHHHhhCC---------hhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 344445555555544 4444 55 666666666666666 666666666666666666666666665666
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+........-|+.-+.+++..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.|+.+..+.|- ..+.|
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y 371 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIY 371 (564)
T ss_pred HhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHH
Confidence 66555555667777777888889999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc--------ccc---cccccccccCCCchH--HHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG--------RSG---DKKETEPQKVDPIQV--ELLLGKAYS 331 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~--~~~la~~~~ 331 (398)
.+|..+|...|++.+|...-..+.+.++.+... ....| ... ...+.+++...|... ...++..+.
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~--LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARS--LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh--hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 999999999999999999988888888776441 11111 001 134667788888753 344999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..|.+.+++..+++.+...|+. ..+..||.++...+.+++|.++|..|+.++|++..+.-.
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 9999999999999999987754 678999999999999999999999999999999877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=143.57 Aligned_cols=284 Identities=13% Similarity=0.044 Sum_probs=155.7
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT 176 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 176 (398)
+=|..+|..++..+|.....|.. .... .| .+.-..+|++++... |.....|...+..+...|+...
T Consensus 533 ~carAVya~alqvfp~k~slWlr-a~~~ek~hgt~Esl~Allqkav~~~---------pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLR-AAMFEKSHGTRESLEALLQKAVEQC---------PKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHH-HHHHHHhcCcHHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHhcCCcHH
Confidence 33444444455555544444432 2222 33 444444555555444 4444445555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
|...+.++++.+|++.++|.....+.....+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++.+++..
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 555555555555555555444444444444444444444444443332 3344444444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchHHHHHH--
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQVELLLG-- 327 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la-- 327 (398)
|+ ....|..+|.++.++++.+.|...|....+..+.... ..+....+.... ..+..+.-.+|.+..+|+.
T Consensus 682 p~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I 760 (913)
T KOG0495|consen 682 PD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI 760 (913)
T ss_pred Cc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence 44 4444444444444444444444444444333333322 111111111111 1222334567777777744
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPND------------------------------FRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
.+-.+.|..++|.....++++..|.+ +.++...|..+....++++|.++|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567799999999888888766544 345677888899999999999999
Q ss_pred HHHHhhCCCChHHHHHhhh
Q 015907 378 IQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 378 ~~al~~~p~~~~~~~~l~~ 396 (398)
.+++..+|++.++|...|.
T Consensus 841 ~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred HHHHccCCccchHHHHHHH
Confidence 9999999999999988774
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-16 Score=142.84 Aligned_cols=276 Identities=14% Similarity=0.103 Sum_probs=187.4
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH-HHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA-GVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~-~~~~la~~~~~ 170 (398)
.++++.+|++......... +++..+.+..+.. .| ++.|..++.++.... |+... .....+..+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---------~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---------DNDQLPVEITRVRIQLA 165 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CcchHHHHHHHHHHHHH
Confidence 4567777776665433322 2344444412222 67 999999999998777 77643 33345889999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHccCH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR--------LLGEVKYELKDY 242 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~g~~ 242 (398)
.|+++.|+..+++..+.+|+++.++..++.+|...|++++|++.+.++.+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999888877665433221 111112222334
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-Cchhhhc--ccccc--ccccccccC
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-DDLSVKD--GRSGD--KKETEPQKV 317 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~ 317 (398)
+...+.++......|+ ++.++..++..+...|+.++|...++++.+. +.++. ..++..+ ++... ..++...+.
T Consensus 246 ~~l~~~w~~lp~~~~~-~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 246 EGLKRWWKNQSRKTRH-QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHHhCCHHHhC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 4444555554455566 7888888899999999999999988777652 22211 1111111 11111 223334556
Q ss_pred CCchHH--HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 318 DPIQVE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 318 ~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
+|+++. ..+|.++...+++++|..+|+++++..|++. .+..++.++..+|+.++|..+|++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 666544 3488888888888888888888888888754 45678888888888888888888887754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-17 Score=144.47 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=82.6
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
...++++.|+.+|.+.+..+|.+...+.. ...+ .| +..|..--.+.+.+. |..+..|..+|..+.-
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySn-rsaa~a~~~~~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSN-RSAAYASLGSYEKALKDATKTRRLN---------PDWAKGYSRKGAALFG 82 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcc-hHHHHHHHhhHHHHHHHHHHHHhcC---------CchhhHHHHhHHHHHh
Confidence 35678889999999999999986655554 3333 77 999999999999999 9999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 202 (398)
.|+|++|+..|.+.++.+|++...+.+++.++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999998887777776665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=149.39 Aligned_cols=250 Identities=15% Similarity=0.158 Sum_probs=203.9
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
........+...+|.-.|+..+..+|.+.++|.. ||+. .+ -..|+..+.+++.++ |++..++..||
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~-LG~~qaENE~E~~ai~AL~rcl~Ld---------P~NleaLmaLA 360 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQK-LGITQAENENEQNAISALRRCLELD---------PTNLEALMALA 360 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHH-hhhHhhhccchHHHHHHHHHHHhcC---------CccHHHHHHHH
Confidence 3444556677889999999999999999999999 9999 34 778999999999999 99999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEG-------AAVTLAELGDYTRAVSLLQDLAKEKP--SDPDVFRLLGEVK 236 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 236 (398)
..|...|.-.+|+.+|.+-+...|........ ..........+..-.++|-.+....| .+++++..||.+|
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999999999999999999877654221110 00001111223445566667777777 6899999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
...|+|++|+++|+.||...|+ +...|..||..+....+..+|+..|++|++ +.
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq-------------------------Lq 494 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ-------------------------LQ 494 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh-------------------------cC
Confidence 9999999999999999999999 999999999999999999999999999966 33
Q ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcCCHHHHHH
Q 015907 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND----------FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 317 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+.-..+++++|..+..+|.|.+|..+|-.+|.+.+.. ..+|..|-.++..+++.+-+..
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 3334678889999999999999999999999876651 2477777777777777764443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-17 Score=140.00 Aligned_cols=234 Identities=16% Similarity=0.158 Sum_probs=206.5
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
+++.+|-..-...+..+.-++.+... .|.+ .| ++.|..+|..++.-+ ....++++++|..+...|+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~n-kgn~~f~ngd~dka~~~ykeal~nd---------asc~ealfniglt~e~~~~ 539 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTN-KGNIAFANGDLDKAAEFYKEALNND---------ASCTEALFNIGLTAEALGN 539 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhc-CCceeeecCcHHHHHHHHHHHHcCc---------hHHHHHHHHhcccHHHhcC
Confidence 34455555555566666556666655 5555 77 999999999999877 8889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+.+|-+...+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+-.+|..++-...
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYS 331 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~ 331 (398)
...|- +.++.-+||..|....-+++|+.+|+++.- ..|. .....++.|+.
T Consensus 620 ryfp~-nie~iewl~ayyidtqf~ekai~y~ekaal---------------------------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 620 RYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAAL---------------------------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred cccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHh---------------------------cCccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999833 3344 34445999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
+.|+|++|...|+..-...|.+.+.+..|.++.-.+|-
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999998887774
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-16 Score=135.47 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=160.4
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD-- 227 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 227 (398)
..+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4467788999999999999999999999999999999876 58899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc
Q 015907 228 -VFRLLGEVKYEL--------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 228 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
+++.+|.++... |++++|+..|++++..+|+ +..++..+..+.... ..+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~-------~~~-------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLR-------NRL-------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHH-------HHH--------------
Confidence 788999999876 8899999999999999999 765553332221110 000
Q ss_pred hhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 375 (398)
......+|.+|...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|+.
T Consensus 166 ---------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 166 ---------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred ---------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223458899999999999999999999997764 5899999999999999999999
Q ss_pred HHHHHHhhCCC
Q 015907 376 MFIQARFFAPE 386 (398)
Q Consensus 376 ~~~~al~~~p~ 386 (398)
+++......|+
T Consensus 225 ~~~~l~~~~~~ 235 (235)
T TIGR03302 225 AAAVLGANYPD 235 (235)
T ss_pred HHHHHHhhCCC
Confidence 99888776663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=142.56 Aligned_cols=285 Identities=11% Similarity=0.022 Sum_probs=232.8
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
++..+|..++.++...+|++.+.|....-+. .. ++.|..+|.++.... .....|+.-+.....+++.
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s----------gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS----------GTERVWMKSANLERYLDNV 667 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC----------CcchhhHHHhHHHHHhhhH
Confidence 5556777788888888888777775422222 22 888888888887644 4556788888888889999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+.+++++++..|+....|..+|.++.++++.+.|.+.|...++..|..+..|..++.+-...|+...|...++++.-
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch--hhhcccccc-ccccccccCC--CchHHHHHHHH
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL--SVKDGRSGD-KKETEPQKVD--PIQVELLLGKA 329 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~--~~~~~~~la~~ 329 (398)
.+|. +...|.....+-.+.|..++|.....++++..+...--.. .....+... .....++..- ..++...+|..
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 9999 9999999999999999999999999999887776633100 000011111 1111122221 22455568999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 330 YSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+....+++.|..+|.+++..+|++.++|..+-..+...|.-++-.+.+.+.....|.+.+.|..
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988875
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-17 Score=135.85 Aligned_cols=257 Identities=13% Similarity=0.160 Sum_probs=208.4
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| +..|+..|..++..+ |++..+++..|.+|...|+-.-|+..+.+++++-|+...+....|.+++.+|+
T Consensus 51 ~~Q~sDALt~yHaAve~d---------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGD---------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred hhhHHHHHHHHHHHHcCC---------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 66 999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDP---DV------------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+++|..-|+++++.+|.+. ++ +......+...|+...|+....+++++.|= +...+...+.+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHH
Confidence 9999999999999999542 22 222334455678999999999999999998 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchHH----HH----------HHHHHH
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQVE----LL----------LGKAYS 331 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~----------la~~~~ 331 (398)
..|++..|+.-++.+-++...+.+ ..++...+..+. ..+++-+..+|..-. +. -+....
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998776655544 333333344433 334555666666311 11 123345
Q ss_pred hCCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFR----GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
..++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..+..++.++|++.++++++.
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 667788888888888887777433 4455778888899999999999999999999999998764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=141.47 Aligned_cols=261 Identities=14% Similarity=0.052 Sum_probs=218.1
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
....+.+.+|++.|..++...|++...|....... .| ++.|....+..+.+. |.........+.++..
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k---------d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK---------DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC---------CCccccccchhhhhhh
Confidence 44778899999999999999999977776623333 77 888888888888888 8888888888888888
Q ss_pred hccHHHHHHHHHHHH------------hcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 171 KNVLQTRLKKYEETL------------SIS------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.++..+|...|+..- .+. |.-..+....+.|+...|++++|...--..+++++.+.++++..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 888888876665221 111 21233556678999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCH------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINF------------EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
|.++...++.+.|+..|++++.++|+ .. ..|..-|.-.+..|++..|.++|..++.+.|.+
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpd-h~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------ 282 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPD-HQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------ 282 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChh-hhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------
Confidence 99999999999999999999999997 43 357778899999999999999999996654433
Q ss_pred hhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 301 VKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
..+. ..+.+++.+...+|+..+|+...+.++.++|....++...|.|+..+++|++|++.|++
T Consensus 283 ----------------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 283 ----------------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred ----------------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 24455999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 015907 380 ARFFAPE 386 (398)
Q Consensus 380 al~~~p~ 386 (398)
+++...+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9988665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=145.77 Aligned_cols=234 Identities=16% Similarity=0.137 Sum_probs=187.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAA 199 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la 199 (398)
.| ++.|...+..++.+-.- ..+...|........+|..|...+++.+|+..|++++.+ +|.-..++.+||
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k-~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEK-TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred hccHHHHHHHHHHHHHHHHH-ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 67 99999999999977100 111223555566667999999999999999999999975 344466899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCC--CHHHH
Q 015907 200 VTLAELGDYTRAVSLLQDLAKEKP--------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDI--NFEVL 264 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~ 264 (398)
.+|...|++++|..++++++++.. .-...+..++.++...+++++|+.++++++++. ++. -+..+
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999999999999999998642 234567888999999999999999999998763 220 24578
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~ 342 (398)
.+||.+|..+|++++|.++|++++.+...... ...+ ..+...+|..|.+.+++.+|...
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~-------------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLG-------------------KKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-------------------CcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999887654311 1112 23445599999999999999999
Q ss_pred HHHHHHh-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 343 YDRLISS-------YPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 343 ~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
|.+++.+ +|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9988764 355567899999999999999999999999884
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=150.26 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=211.4
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
.+......+++.+|+..|++++..+|.++..... +..+ .| .++|+.++++++.-. |........+|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~d-ll~l~~~~G~~~~A~~~~eka~~p~---------n~~~~~llalA 109 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDD-WLQIAGWAGRDQEVIDVYERYQSSM---------NISSRGLASAA 109 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHH-HHHHHHHcCCcHHHHHHHHHhccCC---------CCCHHHHHHHH
Confidence 3444556788899999999999999998533222 2222 67 999999999998333 45555566668
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 245 (398)
..+...|++++|+..|+++++.+|+++.++..++.++...++.++|+..+++++..+|..... ..++.++...++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHH
Confidence 899999999999999999999999999999999999999999999999999999999986554 5667777667888789
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH-------------------------------------
Q 015907 246 AAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR------------------------------------- 288 (398)
Q Consensus 246 ~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~------------------------------------- 288 (398)
+..++++++.+|+ +.+++..+..++...|-...|.+...+--
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999999999 99998888888888777666665544221
Q ss_pred -----------HHhcCCCCCch------------hhhcccccc-----ccccccccCCCchHHHHHHHHHHhCCChHHHH
Q 015907 289 -----------ERLSTGKSDDL------------SVKDGRSGD-----KKETEPQKVDPIQVELLLGKAYSDGGRVSDAV 340 (398)
Q Consensus 289 -----------~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 340 (398)
...+..|+... ....++..+ +.+...-..-|..+..++|..|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 11111121000 000011111 11222223446677777999999999999999
Q ss_pred HHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 341 AVYDRLISSYP------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 341 ~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
.+|++++...| .+......|...|...+++++|..++++.....|
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 99999987553 2333356788888999999999999999887655
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-16 Score=142.17 Aligned_cols=219 Identities=13% Similarity=0.017 Sum_probs=151.0
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
...++.++|...+.++.+..|++........+.+ .| ++.|...++...... |.++.++..++.++..
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---------P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA---------PRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 3445555555555555555554431111101111 34 555555555555555 5555555555555555
Q ss_pred hccHHHHHHHHHH--------------------------------------HHhcCC----CCHHHHHHHHHHHHHcCCH
Q 015907 171 KNVLQTRLKKYEE--------------------------------------TLSISP----KDSTALEGAAVTLAELGDY 208 (398)
Q Consensus 171 ~g~~~~A~~~~~~--------------------------------------~l~~~p----~~~~~~~~la~~~~~~g~~ 208 (398)
.|++++|...+.+ +....| +++..+..++..+...|++
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 5555555444444 344445 4677888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHcCCchHHHHHH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVF--RLLGEVKYELKDYEGSAAAYRVSTMVSKDINF--EVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
++|.+.++++++..|++.... ..........++.+.+++.++++++..|+ ++ ..+..+|.++...|++++|.++|
T Consensus 280 ~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 280 DSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999999999999887532 22333344468889999999999999999 89 88889999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhhccccccccccccccCCCchH-HHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV-ELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
+++.. ....|... ...+|.++...|+.++|..+|++++.
T Consensus 359 e~a~a-------------------------~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 359 KNVAA-------------------------CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhHH-------------------------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 85322 44566543 44699999999999999999999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-16 Score=128.72 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=82.6
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
+.+.|+.+|-+++..+|...+.... +|.+ .| .+.|+.+....+...++ .......+.+.+|.-|+..|-+
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~lt-LGnLfRsRGEvDRAIRiHQ~L~~spdl-----T~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLT-LGNLFRSRGEVDRAIRIHQTLLESPDL-----TFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHH-HHHHHHhcchHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHhhhh
Confidence 3344455555555555444444433 4444 34 44454444443321100 0011123444445555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHH
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
+.|...|....+...-...++..+..+|....+|++|++..++..++.+.. +..+..++..+....+++.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 555555554444333333444455555555555555555555554444432 223344444444444455555555
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.++++.+|+ ...+-..+|.++...|+|+.|++.++.+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 555555554 4555555555555555555555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=126.55 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=201.2
Q ss_pred hhhhhcchh-hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----H
Q 015907 120 KKTIGLGTK-IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----S 192 (398)
Q Consensus 120 ~~~~~lg~~-~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~ 192 (398)
.+..|+..+ .. .+.|+..|..++..+ |...++.+.+|..+...|+.+.|+..-+..+. .|+. .
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d---------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~ 107 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQED---------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRL 107 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcC---------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHH
Confidence 344445555 44 899999999999988 99999999999999999999999999887766 4554 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC----HHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN----FEVLRGLT 268 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~la 268 (398)
.++..+|.-|+..|-++.|...|..+.+...--..++..|..+|....+|++|++.-++..++.+..+ ...+..++
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 48899999999999999999999999886666678999999999999999999999999999988721 34688999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
..+....+.+.|+.++.++++ .+|. .+...+|.++...|+|+.|++.++.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlq---------------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 188 QQALASSDVDRARELLKKALQ---------------------------ADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHh---------------------------hCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 999999999999999999955 4454 45556999999999999999999999
Q ss_pred HHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 347 ISSYPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 347 l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
++.+|+. +.+...|..||..+|+.++...++.++.+..+..
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9999987 6788899999999999999999999999887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=141.22 Aligned_cols=252 Identities=12% Similarity=0.056 Sum_probs=186.7
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT 176 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 176 (398)
.+++..+++.+..+|+++...+. ++.- .+ +..|.....++++++ ...++.+|..++.++...+++.+
T Consensus 461 ~kslqale~av~~d~~dp~~if~-lalq~A~~R~l~sAl~~~~eaL~l~--------~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFY-LALQYAEQRQLTSALDYAREALALN--------RGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHH-HHHHHHHHHhHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhhHH
Confidence 34566666666667776666544 4444 44 677777777777663 04556677777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------------
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--------------------------------- 223 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------------- 223 (398)
|+...+.++...|+|.........+-...++.++|+..+...+.+..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 77777777776666554444444444445555555554444332210
Q ss_pred -----------------------------CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 224 -----------------------------SD-------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 224 -----------------------------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.. ...|...+..+...++.++|..++.++-.+.|. .+..|+..
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~ 690 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLR 690 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHh
Confidence 00 124667788888888899999999999999988 88899999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHH--HH
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVA--VY 343 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~--~~ 343 (398)
|.++...|++.+|.+.|..+ +..+|.++... +|.++.+.|+..-|.. .+
T Consensus 691 G~~~~~~~~~~EA~~af~~A---------------------------l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVA---------------------------LALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHH---------------------------HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 99999999999999999887 44667665544 9999999998887777 99
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..+++++|.+.++|+.+|.++..+|+.++|.+.|..++++.+.+|.
T Consensus 744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-15 Score=136.79 Aligned_cols=224 Identities=14% Similarity=0.017 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
.+..+.-....++.+.|...|.++.+..|++......-.+.+ .| ++.|...++++.... |.++.++.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~---------P~~~~al~ 191 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA---------PRHPEVLR 191 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHH
Confidence 344555556888899999999999998888754432212222 77 999999999999999 99999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhc------------------------------------------CCCCHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSI------------------------------------------SPKDSTALEGAAV 200 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~------------------------------------------~p~~~~~~~~la~ 200 (398)
.++.+|...|++++|+..+.+..+. .|+++.+...++.
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 9999999999999999666655432 2446667788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
.+...|+.++|...++++++. |.++......+.+ ..++++++++..++.++..|+ ++..+..+|.++...+++++|
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999994 4456555444444 449999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH-HHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE-LLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
..+|+++.. ..|+... ..++.++...|+.++|..+|++++.+.
T Consensus 348 ~~~le~al~---------------------------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 348 SLAFRAALK---------------------------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHh---------------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999844 5566554 679999999999999999999998754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=123.28 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=117.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015907 135 VVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSL 214 (398)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 214 (398)
...|++++.++ |.+ ++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..
T Consensus 13 ~~~~~~al~~~---------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 13 EDILKQLLSVD---------PET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHcC---------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35678888777 765 667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 215 LQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 215 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
|++++.++|+++.+++.+|.++...|++++|+..|++++.+.|+ ++..+..++.+...
T Consensus 81 y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~ 138 (144)
T PRK15359 81 YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999888877654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-15 Score=138.24 Aligned_cols=288 Identities=16% Similarity=0.130 Sum_probs=215.6
Q ss_pred HHHHhhcchhhcC--CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH-----
Q 015907 102 EEIKEFGPIDYDA--PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE----- 170 (398)
Q Consensus 102 eA~~~~~~~~~~~--p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~----- 170 (398)
.|+.+.++..... |+++..+.+...+| .| +++++.+..+++... ......-.+..+..+|.+|..
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~----~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLL----GGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHh----hhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 3445555554444 65565555434444 55 788888888887633 111112344567777777643
Q ss_pred ------hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHH
Q 015907 171 ------KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 171 ------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.....++++.++++++.+|.|+.+.+.++.-|..+++.+.|....++++++ ..+++.+|..++.++...+++.
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 235678999999999999999999999999999999999999999999999 4567899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC---------------------------
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--------------------------- 296 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 296 (398)
+|+.....++.-.|+ |.........+-...++.++|+......+......+.
T Consensus 531 ~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 531 EALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 999999999999988 7776667777777788888888887777666652211
Q ss_pred -----------------Cchhhhcc------------------------------cccc--ccccccccCCCch--HHHH
Q 015907 297 -----------------DDLSVKDG------------------------------RSGD--KKETEPQKVDPIQ--VELL 325 (398)
Q Consensus 297 -----------------~~~~~~~~------------------------------~~~~--~~~~~~~~~~~~~--~~~~ 325 (398)
.+....+. ...+ .++.++...+|.. +++.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 00000000 0000 1223333333432 3344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChHHHHHh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAER--MFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l 394 (398)
.|.++...|++.+|...|..++.++|+++.....+|.++.+.|+..-|.. ++..+++++|.++++|..+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999888888 9999999999999999876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-15 Score=144.18 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=172.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+...+..+.+..+.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|........+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 88889999999999999999999999999999999997555589999999999999999999999444444555555688
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++...|++++|++.|+++++.+|+ ++.++..++.++...++.++|+..++++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-------------------------- 163 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELA-------------------------- 163 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------------------
Confidence 999999999999999999999999 89999999999999999999999998873
Q ss_pred ccCCCchHHH-HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 315 QKVDPIQVEL-LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 315 ~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
..+|..... .++.++...++..+|+..|+++++.+|++.+++..+..++...|-...|.+..++
T Consensus 164 -~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 164 -ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred -ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 455553333 2566666677887799999999999999999999999999999999999877664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-15 Score=137.64 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=178.1
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--- 222 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 222 (398)
.|....+...++..|...|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3666777788999999999999999999999998 55555566779999999999999999999999862
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----C--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 223 -----PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK-----D--INFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 223 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|....++.+||.+|...|++++|..++++++++.. . .-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 33456899999999999999999999999988631 1 02346788999999999999999999999987
Q ss_pred hcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCChHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY--------PNDFRGYLAK 360 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 360 (398)
....+. ..++. ..+.++|.+|..+|++++|.++|++++... +.....+..+
T Consensus 355 ~~~~~g-------------------~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 355 YLDAPG-------------------EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhhcc-------------------ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 764322 11212 355569999999999999999999999853 3345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh----CCCChHH
Q 015907 361 GIILKENGKVGDAERMFIQARFF----APEKVKA 390 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 390 (398)
|..|.+++++.+|...|..+..+ -|+++.+
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 99999999999999999988764 4555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=126.14 Aligned_cols=233 Identities=13% Similarity=0.071 Sum_probs=154.3
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..++..+|+-.|+++.-.+|......-. .|.+ .| ++.-..+....+... ..+..-|+.-+...+..
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~-Ya~LL~~eg~~e~~~~L~~~Lf~~~---------~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDL-YAVLLGQEGGCEQDSALMDYLFAKV---------KYTASHWFVHAQLLYDE 313 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHH-HHHHHHhccCHhhHHHHHHHHHhhh---------hcchhhhhhhhhhhhhh
Confidence 5577888999999998888887776554 4444 22 444444444444444 33334455555555555
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD---------- 241 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------- 241 (398)
.++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|...+.|..|..+|...|.
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555544444
Q ss_pred --------------------------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 242 --------------------------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 242 --------------------------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
-++|..++++++.+.|. +..+...++.++...|.+..++.++++.+.
T Consensus 394 ~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------ 466 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI------ 466 (564)
T ss_pred HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh------
Confidence 34566677777777887 777888888888888888888888888744
Q ss_pred CCchhhhccccccccccccccCCCchHH-HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQVE-LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
..|+... ..+|.++...+.+++|+.+|..++.++|++..+...+-..-..
T Consensus 467 ---------------------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 467 ---------------------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred ---------------------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 4455444 4499999999999999999999999999998877766554443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-13 Score=136.68 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=160.8
Q ss_pred HHHHhHHHHHHhhcchhhcC--CCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDA--PIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~--p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
...++.++|..+|+.+.... |+......+ +..+ .| .+.|..+|..+...+ ...+..+|..+...|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL-I~~y~k~G~vd~A~~vf~eM~~~G--------v~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTL-ISTCAKSGKVDAMFEVFHEMVNAG--------VEANVHTFGALIDGCA 518 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhCcCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHH
Confidence 35566777777777766542 332222222 2222 56 777777777776543 0234566777777777
Q ss_pred HhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHH
Q 015907 170 EKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE----KPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
+.|++++|+..|..+.... ..+...|..+...|.+.|++++|.+++.++... .| +...|..+...|.+.|++++
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 7777777777777775543 123556777777777777777777777777652 33 34566666777777777777
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCC-------chhhhcccccc--cccccc-
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD-------DLSVKDGRSGD--KKETEP- 314 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~- 314 (398)
|.+.|+.+.+.+...+...|..+...|.+.|++++|+.+|.++.+. ...|+. ......++.+. ..+...
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777776653335667777777777777777777777665442 112220 00111111111 001111
Q ss_pred -ccCCCch-HHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 315 -QKVDPIQ-VELLLGKAYSDGGRVSDAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 315 -~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
....|.. .+..+...|.+.|++++|+.+|+++.+. .| +...|..+...|.+.|++++|.++|++...
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1222332 3333666667777777777777666542 23 345566666666667777777766666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-14 Score=130.48 Aligned_cols=203 Identities=16% Similarity=0.124 Sum_probs=166.3
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
+|+++.++..+|..+...|+.+.+...+.++....|.+ .+.....+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 38999999999999999999999999999988877755 456778899999999999999999999999999987776
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH----hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 231 LLGEVKYELKDYEGSAAAYRVST----MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
. +..+...|++..+.....+++ ...|. ...++..+|.++...|++++|+..++++++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----------------- 142 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPD-YWYLLGMLAFGLEEAGQYDRAEEAARRALE----------------- 142 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------
Confidence 5 555555555444444444443 45566 677888899999999999999999999866
Q ss_pred ccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF----RGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 307 ~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
..|. ..+..+|.++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|+++
T Consensus 143 ----------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 ----------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred ----------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344 3455599999999999999999999999877443 35678999999999999999999999
Q ss_pred HhhCC
Q 015907 381 RFFAP 385 (398)
Q Consensus 381 l~~~p 385 (398)
+...|
T Consensus 213 ~~~~~ 217 (355)
T cd05804 213 IAPSA 217 (355)
T ss_pred hcccc
Confidence 87766
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-14 Score=126.77 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=212.3
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
.+.+....+++...++..++++...|.+.+...+ .|+. +| .++|....+.++..+ +.....|..+|
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm-kGL~L~~lg~~~ea~~~vr~glr~d---------~~S~vCwHv~g 82 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLAM-KGLTLNCLGKKEEAYELVRLGLRND---------LKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh-ccchhhcccchHHHHHHHHHHhccC---------cccchhHHHHH
Confidence 3444557788888999999999999999999888 8877 78 999999999999877 88899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 245 (398)
.++....+|++|+.+|..++.+.|++...|..++.+..++++++-....-.+.+++.|..-..|..++..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 246 AAAYRVSTMVS---KDI----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 246 ~~~~~~al~~~---p~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
....+...... |+. ..+.......++...|.+++|++.+..-.... .+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-------------------------~D 217 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-------------------------VD 217 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-------------------------HH
Confidence 99888777654 330 12244555666778888888888875532210 01
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAE-RMFIQARFFAPE 386 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 386 (398)
.-......|.++..++++++|...|...+..+|++...+..+-.++..-.+.-++. ..|...-+..|.
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 11122238999999999999999999999999999998888888875333333444 555554444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-13 Score=135.16 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=169.5
Q ss_pred HHHhHHHHHHhhcchhhc--CCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYD--APIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~--~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
..++.++|.++|+++... .|+......+ +..+ .| ++.|..+|..+.... . ..+..+|..+...+.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL-I~gy~k~G~~eeAl~lf~~M~~~G-------v-~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGAL-IDGCARAGQVAKAFGAYGIMRSKN-------V-KPDRVVFNALISACGQ 554 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHCcCHHHHHHHHHHHHHcC-------C-CCCHHHHHHHHHHHHH
Confidence 556677777777777653 3433322222 2222 56 777777777775443 1 2234556666677777
Q ss_pred hccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHH
Q 015907 171 KNVLQTRLKKYEETLSI----SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-PSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 245 (398)
.|++++|...|+++... .| +...|..+...|.+.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 77777777777766542 23 34566666666777777777777777666654 33455666666666666666666
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-------Cchhhhcccccc--cccccc--
Q 015907 246 AAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-------DDLSVKDGRSGD--KKETEP-- 314 (398)
Q Consensus 246 ~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~-- 314 (398)
+..|+++....-..+...|..+...+...|++++|..++..+.+. ...++ ...+...++.+. ..+...
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666666665532223556666666666666666666666655432 11111 111111122221 011111
Q ss_pred ccCCCch-HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 315 QKVDPIQ-VELLLGKAYSDGGRVSDAVAVYDRLISSY-PNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 315 ~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
....|+. .|..+...|.+.|++++|+.+|+++.... ..+...|..+...+.+.|++++|..++.++++.
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2344553 34449999999999999999999987642 234567778889999999999999999999875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-14 Score=132.74 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=190.9
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
+++.+.+....-.+-..+|.+.+.|.. ++.. +| +..|.-+|.+|+... |.+....+..+..|.+.|
T Consensus 186 rGd~eK~l~~~llAAHL~p~d~e~W~~-ladls~~~~~i~qA~~cy~rAI~~~---------p~n~~~~~ers~L~~~~G 255 (895)
T KOG2076|consen 186 RGDIEKALNFWLLAAHLNPKDYELWKR-LADLSEQLGNINQARYCYSRAIQAN---------PSNWELIYERSSLYQKTG 255 (895)
T ss_pred cccHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHhcccHHHHHHHHHHHHhcC---------CcchHHHHHHHHHHHHhC
Confidence 345555555555556678988888887 7766 78 999999999999999 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDS-----TALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A 245 (398)
++..|...|.+++...|... ..-...+..+...++-+.|++.++.++.... ...+.+..++.++....+++.|
T Consensus 256 ~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~ 335 (895)
T KOG2076|consen 256 DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKA 335 (895)
T ss_pred hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHh
Confidence 99999999999999998331 2334456677777777888888888777321 1122334444555555555544
Q ss_pred HHHHHHHH---------------------------------------------------------------hhCCCCCHH
Q 015907 246 AAAYRVST---------------------------------------------------------------MVSKDINFE 262 (398)
Q Consensus 246 ~~~~~~al---------------------------------------------------------------~~~p~~~~~ 262 (398)
........ ...|...++
T Consensus 336 ~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 336 LMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred hHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 44333222 212333566
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 342 (398)
.+..++.+|...|++.+|+.+|..+....+ .....+|+.+|.||..+|.+++|+.+
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~------------------------~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREG------------------------YQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCcc------------------------ccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 788899999999999999999966533111 11235777899999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 343 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
|.+++...|++.++...|+.++.++|+.++|.+.+++..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999998876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-14 Score=140.29 Aligned_cols=274 Identities=10% Similarity=0.014 Sum_probs=193.7
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhh-hcchh-hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTI-GLGTK-IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~-~lg~~-~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
..++.++|.++|+.+... +...|.. ..|.+ .| .++|..+|..+...+ . ..+..++..+...+...|
T Consensus 271 k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-------~-~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-------V-SIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------C-CCCHHHHHHHHHHHHhcc
Confidence 446677888888776432 2333332 12222 66 888888888876543 1 234456777888888888
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+.++|++.|++
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888888765 45667788888888888888888888887754 3456788888889999999999999998
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-------Cchhhhcccccc-ccccccccCCCc-hH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-------DDLSVKDGRSGD-KKETEPQKVDPI-QV 322 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 322 (398)
+.......+..++..+..++...|..++|..+|+.+.+..+..|+ .+++...|++++ ..+.+.....|. ..
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 887654435778888888888899999999998887665444444 122222333333 111112233343 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|..+...+...|+++.|...+++++++.|++...|..++.+|...|++++|.+.++...+.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4447777888888888888888888888888888888888888888888888888877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-14 Score=129.45 Aligned_cols=237 Identities=12% Similarity=0.086 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
+.........++.-. |.+++++-..|..+...|+-++|..+...++..++....+|..+|.++....+|++
T Consensus 23 YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 666677777777766 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|+.+|+.|+.+.|++..+|..++.+..++++++.....-.+.+++.|. .-..|..++..+...|++..|...++...+.
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999999887664
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKV 370 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 370 (398)
....+.. ..............+..+.|.+++|++.+..--..--+........+.++.+++++
T Consensus 173 ~~~~~s~-----------------~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 173 QNTSPSK-----------------EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred hccCCCH-----------------HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 3211110 00001123333677778889988888877654333333455667789999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHh
Q 015907 371 GDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 371 ~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++|...|...+..+|++.+-+..+
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHH
Confidence 999999999999999987765543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-15 Score=114.68 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 257 (398)
..+|+++++++|++ ++.+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34556666655543 344566666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 258 DINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 258 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+ ++.+++.+|.++...|++++|+..|+++
T Consensus 90 ~-~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 90 S-HPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 5555555555555555555555555544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-13 Score=135.20 Aligned_cols=275 Identities=14% Similarity=0.142 Sum_probs=185.2
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchh--hhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETE--KKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~--~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
....++..+|+.+|+.+....|..++ .+..-+..+ .+ .+.+..++..+.... ..| +..++..+...|
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-------~~~-~~~~~n~Li~~y 168 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-------FEP-DQYMMNRVLLMH 168 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CCc-chHHHHHHHHHH
Confidence 34567788999999887754433222 222212222 45 777888888776544 113 456777788888
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----------------------
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--S---------------------- 224 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~---------------------- 224 (398)
.+.|++++|...|++..+ .+...|..+...|.+.|++++|+.+|+++++..+ +
T Consensus 169 ~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 888888888888887754 2556788888888888888888888888866432 1
Q ss_pred ------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 225 ------------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 225 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+..++..+...|.+.|++++|.+.|+... +. +..+|..+...|...|++++|+.+|+++... .
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g 320 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-G 320 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 12234566778888888888888887653 23 6778888888888888888888888776542 2
Q ss_pred CCCCC-------chhhhcccccc--cccccc--ccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH
Q 015907 293 TGKSD-------DLSVKDGRSGD--KKETEP--QKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360 (398)
Q Consensus 293 ~~~~~-------~~~~~~~~~~~--~~~~~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 360 (398)
..|+. ......+.++. ..+... ....|+ .++..+...|.+.|++++|..+|++..+ .+...|..+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~l 397 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNAL 397 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence 22221 11111122221 001111 122333 3444589999999999999999988753 356789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 015907 361 GIILKENGKVGDAERMFIQARFF--APEK 387 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~--~p~~ 387 (398)
...|.+.|+.++|++.|++.... .|+.
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999998764 4553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=118.95 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=114.2
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK-YELKD--YEGSAA 247 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 247 (398)
.++.++++..++++++.+|++++.|..+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.++++++.+|+ ++.++..+|..+...|++++|+.+|+++++..+
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999 999999999999999999999999999977554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-13 Score=120.62 Aligned_cols=262 Identities=15% Similarity=0.077 Sum_probs=170.7
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhh-----cchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIG-----LGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~-----lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
....++.++|.+.+++++...|++...+..+ +|...| ...+...+... ....|.....+..+|.+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW---------APENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc---------CcCCCCcHHHHHHHHHH
Confidence 3456677888888888888888877654321 111123 33333333321 12236666777778888
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP----DVFRLLGEVKYELKDYE 243 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~ 243 (398)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+ ..+..++.++...|+++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 88888888888888888888888888888888888888888888888888888766432 34567888888888888
Q ss_pred HHHHHHHHHHhhCCCC-CHHHHH---HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 244 GSAAAYRVSTMVSKDI-NFEVLR---GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~-~~~~~~---~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
+|+..|++++...|.. ...... .+...+...|....+..+ +.+......... ....
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~-------------------~~~~ 263 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFP-------------------DHGL 263 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcC-------------------cccc
Confidence 8888888887665521 111111 222223334443333333 111111000000 0001
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN---------DFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.......+.++...|+.++|...+..+...... ........+.++...|++++|+..+..++.+.
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 122234888889999999999999887653322 25567788999999999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=111.70 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=156.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
.+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|...+..|++.+|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444677777778888999888 88999999999999999999998888898888888899999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS 331 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 331 (398)
+..+.|+ +.++|..+|.+|.+.|++++|...|.+++++. .....+..++|..|.
T Consensus 126 A~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-------------------------~~~p~~~nNlgms~~ 179 (257)
T COG5010 126 AARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELA-------------------------PNEPSIANNLGMSLL 179 (257)
T ss_pred HhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-------------------------cCCchhhhhHHHHHH
Confidence 9999999 99999999999999999999999999987743 333467777999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
-.|+++.|..++..+...-+.+..+..+++.+...+|++++|.....+-
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999998878888999999999999999999988776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-14 Score=120.62 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=128.2
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChH---HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE---AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---ALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~ 201 (398)
.| ++.|+..|..++... |.++ .+++.+|.++...|++++|+..|+++++..|+++. +++.+|.+
T Consensus 46 ~~~~~~A~~~~~~~~~~~---------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~ 116 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRY---------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS 116 (235)
T ss_pred cCCHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence 45 777777777777666 5443 57889999999999999999999999999998765 68889999
Q ss_pred HHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 202 LAEL--------GDYTRAVSLLQDLAKEKPSDPDVF-----------------RLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 202 ~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
+... |++++|+..+++++..+|++..++ ..+|.++...|++.+|+..|++++...
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 9876 789999999999999999875432 357888999999999999999999997
Q ss_pred CCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 257 KDI--NFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 257 p~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
|+. .+.++..+|.++...|++++|..+++....
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 761 457999999999999999999999877644
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=124.96 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
+..|+..+..++.+. |++...|.+.+.+++..|++++|....++.+++.|..+......+.++...++..+
T Consensus 65 Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 788999999999999 99999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 211 AVSLLQDLA------------KEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 211 A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
|...++..- .+. |....+-..-+.|+...|++++|...--..+++++. +.++++..|.++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccc
Confidence 886665221 111 222334556679999999999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
...+.+.|+..|++++.+.+....... ....|. ..+-.-|.-..+.|++..|.++|..+|.++
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~---------------~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKS---------------ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHh---------------HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 999999999999999775544321000 011111 233347888999999999999999999999
Q ss_pred CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 351 PND----FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 351 p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
|++ ...|.+++.+...+|+.++|+.....++.++|....++..+
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 986 45789999999999999999999999999999998887754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-13 Score=109.01 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=160.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
++....+-....+....|+.+-|..++++.....|....+....|..+...|++++|+++|+..++.+|.+..++...-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 55555566667788889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+...+|+.-+|++.+...++..+. +.++|..++.+|...|+|++|.-++++++
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l-------------------------- 181 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL-------------------------- 181 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH--------------------------
Confidence 888999999999999999999999 99999999999999999999999999884
Q ss_pred ccCCCchHHHH--HHHHHHhCC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 315 QKVDPIQVELL--LGKAYSDGG---RVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 315 ~~~~~~~~~~~--la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
-..|....+. +|.++.-+| ++.-|..+|.++++++|.+..+++.+-.+..
T Consensus 182 -l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 182 -LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred -HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 3556654444 888887776 5678999999999999988888776655544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9e-14 Score=124.34 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PDVFRLL 232 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 232 (398)
....+|...+...++..|+++|..++.++ .+...+.+.+.+|...|.+.+.+....++++..... ..+...+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999 888899999999999999999999999988765432 2234456
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC-------------------------CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDI-------------------------NFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
|..|...++++.++.+|++++...... -..--..-|..++..|+|..|+..|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 778888899999999999987643210 1222345688999999999999999998
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
++ .+|.+ .+.+.|.||..+|.+..|+...+.+++++|++..+|...|.++.
T Consensus 385 Ik---------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 385 IK---------------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred Hh---------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 55 55665 45569999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+.+|++|.+.|+.+++.+|++.++.-.
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 9999999999999999999998776543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-13 Score=107.96 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=163.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
..|+...++.....+....|+.+.|..+++++-...|+...+...-|..+...|++++|+++|+..++-+|. +...+..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHH
Confidence 344445567777788889999999999999999989999999999999999999999999999999999999 8888888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
...+...+|+.-+|++.+...++.+.. ..++|..++.+|...|++++|.-+|+++
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~-------------------------D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMN-------------------------DQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcC-------------------------cHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 888889999999999999888774432 2467777999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 347 ISSYPNDFRGYLAKGIILKENG---KVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 347 l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
+-+.|.++..+..+|.+++-+| ++.-|.++|.++++++|.+..+|+.+|-
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 9999999999999999998877 4677999999999999999999988764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-13 Score=111.87 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=148.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.+..+ ..++..+...|+-+.+..+..+....+|.+...+..+|......|++.+|+..++++..+.|++.++|..+|.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 888888 8889999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+|.+.|++++|...|.+++++.|. .+.+..++|..+.-.|+++.|..++..+..
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l------------------------- 196 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL------------------------- 196 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh-------------------------
Confidence 999999999999999999999999 999999999999999999999999988744
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
.......+..+++.+...+|++++|.....+-+
T Consensus 197 ~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 SPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 222234566679999999999999988765533
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-14 Score=115.30 Aligned_cols=119 Identities=10% Similarity=0.096 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL-AELGD-- 207 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~-- 207 (398)
.+.++..+..++..+ |++...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~---------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 55 PEAQLQALQDKIRAN---------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence 577888899999999 999999999999999999999999999999999999999999999975 67787
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+++|...++++++.+|+++.++..+|.++...|++++|+.+|+++++..|.
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 599999999999999999999999999999999999999999999999987
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=131.96 Aligned_cols=148 Identities=9% Similarity=0.011 Sum_probs=101.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 183 ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 183 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
......|++++++..||.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|+..+++++..+|+ +..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 3334466667777777777777777777777777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 342 (398)
+++.+|.++...|++++|+.+|++++. ...++.+++..+|.++...|+.++|...
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~-------------------------~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSR-------------------------QHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh-------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777777777766643 1222335556677777777777777777
Q ss_pred HHHHHHhCCCChHH
Q 015907 343 YDRLISSYPNDFRG 356 (398)
Q Consensus 343 ~~~al~~~p~~~~~ 356 (398)
|+++++...+-...
T Consensus 211 ~~~a~~~~~~~~~~ 224 (694)
T PRK15179 211 LQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhhCcchHH
Confidence 77777655444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=132.77 Aligned_cols=215 Identities=12% Similarity=0.077 Sum_probs=170.5
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------ 226 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 226 (398)
..|.+..+|..+...+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34889999999999999999999999999999999999999999999999999998888777 6666655554
Q ss_pred -------------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 227 -------------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 227 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
.+++.+|.||-.+|++++|...|+++++.+|+ ++.++.++|..|... +.++|+.++.+++...-.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999 999999999999999 999999999999775332
Q ss_pred CCCCchhhhcccccc--ccccccccCCCchHHH----------HHH------------HHHHhCCChHHHHHHHHHHHHh
Q 015907 294 GKSDDLSVKDGRSGD--KKETEPQKVDPIQVEL----------LLG------------KAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 294 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~la------------~~~~~~g~~~~A~~~~~~al~~ 349 (398)
..+ ... +.+.+.+..+|.+... .++ .+|...++|++++.+++.+++.
T Consensus 182 ~kq---------~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 182 KKQ---------YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhc---------chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 211 110 1122333444443222 023 5667777888888888888888
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 350 YPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 350 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
+|.+..+...++.+|. +.|.. ...|+..+++
T Consensus 253 ~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 253 DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 8888888888888887 44443 5555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-12 Score=130.50 Aligned_cols=189 Identities=15% Similarity=0.036 Sum_probs=143.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--KPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 239 (398)
..+...|.+.|++++|...|+.. +.+..+|..+...|...|+.++|+.+|+++.+. .|+ ..++..+-..+...
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc
Confidence 34456777788888888888775 456778888888888888888888888887764 344 34455556677788
Q ss_pred cCHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 240 KDYEGSAAAYRVSTMVSK-DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
|.+++|..+|+.+.+..+ ..+...|..+..++.+.|++++|.++++++ ...
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----------------------------~~~ 654 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----------------------------PIT 654 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----------------------------CCC
Confidence 888888888888774321 114677888888888888888888887654 233
Q ss_pred Cc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 319 PI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 319 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|+ .+|..+-..+...|+.+.+....++++++.|++...+..++.+|...|++++|.+..+...+.
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 43 334445567778899999999999999999999999999999999999999999998877653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=106.44 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=103.1
Q ss_pred HHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 137 IFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQ 216 (398)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 216 (398)
.|..++... |.+....+.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++
T Consensus 5 ~~~~~l~~~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLGLD---------SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHcCC---------hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777 88888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 217 DLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 217 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
++++.+|+++..++.+|.++...|++++|+..|+++++.+|+ +..
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 120 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE-NPE 120 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch
Confidence 999999999999999999999999999999999999999987 544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=129.84 Aligned_cols=182 Identities=14% Similarity=0.029 Sum_probs=118.5
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
++....|...|-+.++.+|....++.. +|.. .- ...|...|.+++.++ +.+..++-..+..|.+..
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~-LG~iYrd~~Dm~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAF-LGQIYRDSDDMKRAKKCFDKAFELD---------ATDAEAAAASADTYAEES 540 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccc
Confidence 344567788888888899988888888 8888 23 678889999999888 666666666666666666
Q ss_pred cHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
+++.|....-.+-+..|-. ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 6666655544444433332 23445566666666666666666666666666666666666666666666666666666
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
++..++|. +..+.+..+.+....|+|.+|+..+...+.
T Consensus 621 kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 621 KASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666666 555555566666666666666655554443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=115.90 Aligned_cols=120 Identities=21% Similarity=0.280 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+..+-.-|.-++..++|++|+..|.++|+++|.++..|.+.|.+|.++|+++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
.+|++.+|++.|+++++++|+ +...+.+|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999 8988888888877776665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-13 Score=129.76 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=135.5
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
...-++..+++.........+|.+++.+.+ ++.+ .| +++|..+++.++.+. |++..++..++.++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-La~i~~~~g~~~ea~~~l~~~~~~~---------Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 62 HAAVHKPAAALPELLDYVRRYPHTELFQVL-VARALEAAHRSDEGLAVWRGIHQRF---------PDSSEAFILMLRGVK 131 (694)
T ss_pred hhhhcchHhhHHHHHHHHHhccccHHHHHH-HHHHHHHcCCcHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHH
Confidence 334455666777777778888888888887 8777 77 999999999999998 999999999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHhhCCC
Q 015907 250 RVSTMVSKD 258 (398)
Q Consensus 250 ~~al~~~p~ 258 (398)
+++++...+
T Consensus 212 ~~a~~~~~~ 220 (694)
T PRK15179 212 QAGLDAIGD 220 (694)
T ss_pred HHHHHhhCc
Confidence 999888655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=105.70 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 259 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
++..++.+|.++...|++++|+..|+++++..+
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 84 -DPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999977443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-12 Score=128.77 Aligned_cols=278 Identities=12% Similarity=0.071 Sum_probs=186.1
Q ss_pred HHHhHHHHHHhhcchhh--cCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDY--DAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~--~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
..++.++|+++|+++.. ..|+......+ +..+ .| ++.|..++..+...+ ...+..++..+...|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l-l~a~~~~g~~~~a~~l~~~~~~~g--------~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASV-LSACACLGDLDVGVKLHELAERKG--------LISYVVVANALIEMYSK 436 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHH-HHHHhccchHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHH
Confidence 56778999999998754 45766555444 4444 67 889999998887665 12345567777888888
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH----------------------
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPD---------------------- 227 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~---------------------- 227 (398)
.|++++|...|++..+ .+...|..+...|...|++++|+.+|++++.. .|+...
T Consensus 437 ~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 437 CKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred cCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 8888888888887643 34567777888888888888888888877643 232211
Q ss_pred ------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 228 ------------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 228 ------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
....+...|.+.|+.++|...|+.. +. +..+|..+...|...|+.++|+.+|+++.+. ...|
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~P 587 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK-DVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNP 587 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC
Confidence 1123346677777777777777765 23 5677777777777777777777777776542 2223
Q ss_pred CCchh-------hhcccccc-----ccccccccCCCch-HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 015907 296 SDDLS-------VKDGRSGD-----KKETEPQKVDPIQ-VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362 (398)
Q Consensus 296 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 362 (398)
+...+ ...|..++ ..........|.. .+..+..++.+.|++++|..++++. ...|+ ...|..+-.
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ 665 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLN 665 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHH
Confidence 31111 01122221 1111122345553 4445999999999999999998875 34554 667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 363 ILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 363 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+...|+.+.+....+++++++|++...++.
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 8888899999999999999999998766553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-12 Score=116.33 Aligned_cols=227 Identities=19% Similarity=0.155 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
.+.......++.+.|++++|+.++++....-++...++...|.++..+|++++|...|..+++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45667788889999999999999999988888999999999999999999999999999999999999999999888874
Q ss_pred Hcc-----CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHH-HHHHHHhcCCCC--Cchhhhccc----
Q 015907 238 ELK-----DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL-LASRERLSTGKS--DDLSVKDGR---- 305 (398)
Q Consensus 238 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~-~~a~~~~~~~~~--~~~~~~~~~---- 305 (398)
... +.+.-...|+......|. .... ..+...+..-..+......| ...+. ...|. .++.....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPR-SDAP-RRLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcc-ccch-hHhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChhHH
Confidence 333 567778888888777765 1111 11111111101111111111 11100 00000 000000000
Q ss_pred -------------ccc-ccccc--cccCCCch--HH--HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 306 -------------SGD-KKETE--PQKVDPIQ--VE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 306 -------------~~~-~~~~~--~~~~~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
... ..+.. .....|.. +| +.++..|...|++++|+.+++++|+..|..++.+...|.++.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 000 00000 01122222 33 348999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCh
Q 015907 366 ENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
..|++.+|.+.++.|..+|+.|-
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999998763
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-13 Score=126.28 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
...|...|-+++.++ +..+.+|..+|..|+...+...|..+|+++.+++|.+.+++...+..|....+++.
T Consensus 474 ~~~al~ali~alrld---------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 474 SALALHALIRALRLD---------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred HHHHHHHHHHHHhcc---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 566777778888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSD--PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR 288 (398)
Q Consensus 211 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 288 (398)
|....-.+-+..|.. ...|..+|..|.+.+++.+|+..|+.+++.+|. +...|..+|.+|...|++..|++.|.++.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 999976666666533 356777999999999999999999999999999 99999999999999999999999998884
Q ss_pred HHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-------HHHHH
Q 015907 289 ERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-------RGYLA 359 (398)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~ 359 (398)
. .+|.+ ..+..+.+....|+|.+|+..+...+....... +.+..
T Consensus 624 ~---------------------------LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 624 L---------------------------LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred h---------------------------cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4 55554 444588899999999999999998887554443 44444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 015907 360 KGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 360 la~~~~~~g~~~~A~~~~~~al~ 382 (398)
++..+...|=...|..++++.++
T Consensus 677 ~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 677 DAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 44445555656666666666554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=126.85 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-------------------
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------------------- 191 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------------- 191 (398)
++.|+......+... |+....++.+|..+.+.+++.++... .++...+.+
T Consensus 47 ~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 47 TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhh
Confidence 555666655555555 55555666666655555555554433 333333333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
..+++.+|.||-.+|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+++..
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 367777777777777777777777777777777777777777777777 777777777777654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-12 Score=111.35 Aligned_cols=151 Identities=24% Similarity=0.279 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|....+++..+..++..|++++|...++.++...|+++..+...+.++...++..+|.+.+++++.++|. .+..+.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 5556666666666666666666666666666666666666666666666666666666666666666666 566666666
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
.+|...|++.+|+..++.... .+|. +.|..++..|..+|+..+|..
T Consensus 382 ~all~~g~~~eai~~L~~~~~---------------------------~~p~dp~~w~~LAqay~~~g~~~~a~~----- 429 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLF---------------------------NDPEDPNGWDLLAQAYAELGNRAEALL----- 429 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhh---------------------------cCCCCchHHHHHHHHHHHhCchHHHHH-----
Confidence 666666666666666665533 2222 344446666666665554433
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 347 ISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 347 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
..+..|...|++++|+..+..+.+..
T Consensus 430 ------------A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 430 ------------ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ------------HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 33444555566666666666555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-13 Score=101.22 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=71.6
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 186 SIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 186 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
.+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++.+|+..|.+++.++|+ ++..+
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 344 5555666666766777777777777777777777777777777777777777777777777777777766 67777
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.++|.+++..|+.+.|...|+.++...
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777776666544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=100.20 Aligned_cols=103 Identities=7% Similarity=-0.070 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
++.....+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|+|.+|+..|.+++.++|+++..+.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCC
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p 257 (398)
|++..|+.+.|.+.|+.++....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999863
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=118.55 Aligned_cols=206 Identities=16% Similarity=0.060 Sum_probs=175.1
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ...|+.+|++.- .|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-
T Consensus 411 lGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 411 LGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred cchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 67 788888887753 577788999999999999999999888 66778888888877776666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
|++|.++.+.. +..+...+|......++|.++.++++..++++|- ....|+.+|.+..+.++++.|...|..+
T Consensus 473 yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 66666665543 3446677777777889999999999999999999 9999999999999999999999999998
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
.. +.++....|.+++..|...++-.+|...+.++++.+-++...|.|.-.+..+.
T Consensus 546 vt-------------------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 546 VT-------------------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hh-------------------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 55 33333467778999999999999999999999999988899999999999999
Q ss_pred CCHHHHHHHHHHHHhhC
Q 015907 368 GKVGDAERMFIQARFFA 384 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~ 384 (398)
|.+++|+..+.+.+.+.
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 99999999999988763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-10 Score=98.93 Aligned_cols=273 Identities=15% Similarity=0.116 Sum_probs=173.8
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh----hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK----IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~----~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
.++++.+|+++....-+..+.....+ + +|.. .| .+.+-.++.++-+.. ..+.......++.....
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~-l-~aA~AA~qrgd~~~an~yL~eaae~~--------~~~~l~v~ltrarlll~ 165 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAY-L-LAAEAAQQRGDEDRANRYLAEAAELA--------GDDTLAVELTRARLLLN 165 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHH-H-HHHHHHHhcccHHHHHHHHHHHhccC--------CCchHHHHHHHHHHHHh
Confidence 55677777777766443333322232 2 2222 56 777777887777663 02333456667777788
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH--HHHHHH--HHHHccCHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDV--FRLLGE--VKYELKDYEGS 245 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~--~~~la~--~~~~~g~~~~A 245 (398)
.|++..|.....++++..|.++.++.....+|...|+|.+...++.++-+..--+ .+. +-..+. ++.+.++-..+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888888888888888888888888888888888888888877776643211 111 111111 11122222222
Q ss_pred H---HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc-------ccccccc
Q 015907 246 A---AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD-------KKETEPQ 315 (398)
Q Consensus 246 ~---~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 315 (398)
. .+++..-..-.. ++.....++.-+...|++++|.+...++++.. .+..+....++... ...++.+
T Consensus 246 ~gL~~~W~~~pr~lr~-~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~~L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRN-DPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDPRLCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhc-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cChhHHHHHhhcCCCCchHHHHHHHHHH
Confidence 2 233322222223 56677777888888888888888886665533 22223333333322 2233344
Q ss_pred cCCCchHHH--HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 316 KVDPIQVEL--LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 316 ~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
...|.++.. .+|..+.+.+.|.+|..+|+.+++..|. ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555444 4999999999999999999999997774 567888999999999999999999998854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-12 Score=114.39 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+...|..++..|++++|+.+|.++++.+|+++.++..+|.+|..+|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
++++|+..|++++.++|+ +..+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG-DSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 999999999999999999 999988888886554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-10 Score=109.25 Aligned_cols=130 Identities=17% Similarity=0.056 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.+++.++..|...|++++|+++.+++|...|. .++.+...|.++-..|++.+|..+++.+..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----------------- 256 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARE----------------- 256 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------
Confidence 35678899999999999999999999999999 999999999999999999999999999855
Q ss_pred ccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhC--CCC-------hHHHHHHHHHHHHcCCHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSY--PND-------FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~la~~~~~~g~~~~A~~ 375 (398)
.++.|-+.+ .+..+.+.|+.++|...+..-...+ |.. .......|.+|.+.|++..|+.
T Consensus 257 ----------LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 257 ----------LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred ----------CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556666655 8888999999999999887765533 111 2334567999999999999999
Q ss_pred HHHHHHhhC
Q 015907 376 MFIQARFFA 384 (398)
Q Consensus 376 ~~~~al~~~ 384 (398)
.|..+.+..
T Consensus 327 ~~~~v~k~f 335 (517)
T PF12569_consen 327 RFHAVLKHF 335 (517)
T ss_pred HHHHHHHHH
Confidence 998887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-10 Score=96.98 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=143.7
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA---LEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 229 (398)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.+|...+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456778899999999999999999999999999988654 4899999999999999999999999998876 4678
Q ss_pred HHHHHHHHHcc---------------C---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 230 RLLGEVKYELK---------------D---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 230 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
+.+|.++...+ + ..+|+..|++.++..|+ ..-+ .+|...+..+...+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~ya--------------~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQYT--------------TDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-ChhH--------------HHHHHHHHHHHHHH
Confidence 88888765443 1 35688899999999998 4321 22222222221111
Q ss_pred cCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcC
Q 015907 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENG 368 (398)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g 368 (398)
..-.+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|
T Consensus 175 ----------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 175 ----------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred ----------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 1233458999999999999999999999998876 578999999999999
Q ss_pred CHHHHHHHHHHH
Q 015907 369 KVGDAERMFIQA 380 (398)
Q Consensus 369 ~~~~A~~~~~~a 380 (398)
..++|.......
T Consensus 227 ~~~~a~~~~~~l 238 (243)
T PRK10866 227 LNAQADKVAKII 238 (243)
T ss_pred ChHHHHHHHHHH
Confidence 999998876543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-11 Score=108.11 Aligned_cols=223 Identities=13% Similarity=0.155 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
..+.--..+...|+|++|+....+.+...|++..+....-.++.+.+.|++|+...++-....-. ....+..+.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHc
Confidence 34444456677899999999999999999999999999999999999999999655443322111 12236889999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC----Cchhhhccccccccccccc
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----DDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 315 (398)
+..++|+..++ ..++. +.......|.+++++++|++|+..|+...+......+ .++.......... +.+.+
T Consensus 93 nk~Dealk~~~---~~~~~-~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRL-DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSV 167 (652)
T ss_pred ccHHHHHHHHh---ccccc-chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhc
Confidence 99999999999 44565 6678888999999999999999999776543332222 1222221111111 22222
Q ss_pred cCC---CchHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CC-------ChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 316 KVD---PIQVELLLGKAYSDGGRVSDAVAVYDRLISSY--------PN-------DFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 316 ~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
... ..+..++.+.++...|+|.+|++.+++++.+. .. -..+...++.++..+|+.++|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 222 33567789999999999999999999995421 11 1236788999999999999999999
Q ss_pred HHHHhhCCCCh
Q 015907 378 IQARFFAPEKV 388 (398)
Q Consensus 378 ~~al~~~p~~~ 388 (398)
...+..+|-|.
T Consensus 248 ~~~i~~~~~D~ 258 (652)
T KOG2376|consen 248 VDIIKRNPADE 258 (652)
T ss_pred HHHHHhcCCCc
Confidence 99999887764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=95.11 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=130.2
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 229 (398)
..+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.++...|++++|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 345678899999999999999999999999988876 5689999999999999999999999999998876 4578
Q ss_pred HHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc
Q 015907 230 RLLGEVKYELK-----------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 230 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
+.+|.++.... ...+|+..|+..+...|+ +..+ .+|...+..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-S~y~--------------~~A~~~l~~l~~~l------- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-SEYA--------------EEAKKRLAELRNRL------- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-STTH--------------HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-chHH--------------HHHHHHHHHHHHHH-------
Confidence 88888876543 245788888888888887 4322 12222222221111
Q ss_pred hhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAE 374 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 374 (398)
..-.+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..|..+|..+.|.
T Consensus 141 ---------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 ---------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ---------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ---------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1234458999999999999999999999999997 468899999999999988554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-10 Score=101.24 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=127.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...++..+|.+.+++++.++|..+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45566788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++...|++.+|+..++..+..+|+ ++..|..|+.+|..+|+..+|...+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~------------------------------ 431 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR------------------------------ 431 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH------------------------------
Confidence 888888888888888888888888 8888888888888888877766553
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
+..|...|++++|+..+..+.+...
T Consensus 432 ------------AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 432 ------------AEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred ------------HHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 4556677888888888888877653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=106.76 Aligned_cols=106 Identities=25% Similarity=0.262 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH--HHHHHHHhCCChHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL--LLGKAYSDGGRVSDA 339 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A 339 (398)
+-+..-|.-+...++|.+|+..|.+|++ ++|.++.+ +.+.+|.++|+++.|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~---------------------------l~P~nAVyycNRAAAy~~Lg~~~~A 134 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIE---------------------------LDPTNAVYYCNRAAAYSKLGEYEDA 134 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh---------------------------cCCCcchHHHHHHHHHHHhcchHHH
Confidence 3456678888999999999999999955 66665444 499999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 340 VAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 340 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++.++.++.++|.+..+|..||.+|..+|++++|++.|+++|+++|++...+.+|
T Consensus 135 VkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 135 VKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=110.61 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.+|..|.-..++++|+.++++-+.+... ...+++.||..+..+|..++|+.+.++.+++.
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3667776667777777777777666432 34567777777777777777777777776665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-10 Score=102.21 Aligned_cols=243 Identities=19% Similarity=0.151 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 86 ERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 86 ~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
.-+..+.+....+++++|++...+++...|++.++++..+-.+ .+ ++.|..+.+.-.... ......+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----------~~~~~~f 83 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----------VINSFFF 83 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----------hcchhhH
Confidence 4456677777889999999999999999999999887622222 55 888885554432111 1111227
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
..+.|+++.+..++|+.+++ ..++.+..++...|.+++++|+|++|+..|+.+++.+.++.+........-... -
T Consensus 84 EKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~ 158 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--A 158 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--h
Confidence 89999999999999999999 456667778999999999999999999999999998777665544333222111 0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchH
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV 322 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (398)
..+ . ..+.....|+...+.+++.+.++...|+|.+|++.+++++++....-. .+... .+.+..+-+-.
T Consensus 159 l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~------~~d~~----eEeie~el~~I 226 (652)
T KOG2376|consen 159 LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE------DEDTN----EEEIEEELNPI 226 (652)
T ss_pred hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc------ccccc----hhhHHHHHHHH
Confidence 011 1 344455555546788999999999999999999999999554432200 00000 00011111224
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
...++.++..+|+.++|...|...+..+|.|..
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 445999999999999999999999998887653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-11 Score=109.94 Aligned_cols=199 Identities=18% Similarity=0.100 Sum_probs=167.7
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.|.....-..++..+...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3666667778999999999999999999874 5677889999999999999999999998 666777888777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
.+..... +|+++.++....+..+...+|......++|+++..+++...++
T Consensus 465 Dv~~d~s-------~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----------------------- 514 (777)
T KOG1128|consen 465 DVLHDPS-------LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI----------------------- 514 (777)
T ss_pred hhccChH-------HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc-----------------------
Confidence 7766554 4555555443336667788888888899999999999888552
Q ss_pred cccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 314 PQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 314 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..-....|+.+|.+..+.++++.|..+|..++.++|++.++|.+++..|...|+..+|...+++|++.+-++..+|.|
T Consensus 515 --nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 515 --NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN 592 (777)
T ss_pred --CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence 222246778899999999999999999999999999999999999999999999999999999999999888888876
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=106.79 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVG 371 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 371 (398)
+..+|..+...|..++|+.+.++.++..-. ...+..++...-...|..+
T Consensus 318 cwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 333677777777777777777776665321 2334555555555555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.2e-11 Score=89.12 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 232 (398)
..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 468889999999999999999999999998876 5688999999999999999999999999988875 6789999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
|.++...|++++|+.++++++...|+ +..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG-SSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC-ChhHH
Confidence 99999999999999999999999998 65543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-09 Score=91.98 Aligned_cols=225 Identities=16% Similarity=0.075 Sum_probs=170.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccC
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKD 241 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 241 (398)
.-|..-+..|+|.+|.....+.-+..+....++..-+....++|+++.|-.++.++-+..++ ...+....+.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34566677899999999999988877777778888889999999999999999999998443 35677788999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC--Cch--------hhhcccccc-cc
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--DDL--------SVKDGRSGD-KK 310 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~--------~~~~~~~~~-~~ 310 (398)
++.|.....++++..|. ++.++.....+|...|++.+....+.+..+.--.... ..+ ......... +.
T Consensus 169 ~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999 9999999999999999999999988776553222211 000 000000000 00
Q ss_pred ----c---cccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH-------------------------------HhCCC
Q 015907 311 ----E---TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI-------------------------------SSYPN 352 (398)
Q Consensus 311 ----~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~p~ 352 (398)
+ ......+| .....++.-+...|++++|.+...+++ ..+|+
T Consensus 248 L~~~W~~~pr~lr~~p-~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 248 LKTWWKNQPRKLRNDP-ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHHHhccHHhhcCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 1 11111111 233336677778888888887766655 34688
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
++..+..||..+.+.+.|.+|..+|+.++...|+..+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 8899999999999999999999999999999887544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-10 Score=95.68 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=146.7
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDS-TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
+....+|..|+..++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+|+.|++.+|+|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4466789999999988776654443 566778999999999999999999988876667889999999999999999998
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLL 326 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (398)
....++ |+ ++-....+-.+..+.++-++-....... + +..+-...+
T Consensus 112 ~~~~ka----~k-~pL~~RLlfhlahklndEk~~~~fh~~L-q----------------------------D~~EdqLSL 157 (557)
T KOG3785|consen 112 SIAEKA----PK-TPLCIRLLFHLAHKLNDEKRILTFHSSL-Q----------------------------DTLEDQLSL 157 (557)
T ss_pred HHHhhC----CC-ChHHHHHHHHHHHHhCcHHHHHHHHHHH-h----------------------------hhHHHHHhH
Confidence 877664 55 5555555556666777655544443322 1 111233447
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+.++...-.|++|+++|.+.+..+|+....-..++.||.++.-++-+.+.+..-+...|+++-+.+
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 777777778999999999999988888888888999999999999999999988998998876654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=96.78 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK---DYEGSAAAY 249 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 249 (398)
+.+.-+.-++..+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++.... ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999998887654 467899999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
++++..+|. ++.+...||..++..|+|.+|+..++..+...+.
T Consensus 217 ~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999 9999999999999999999999999998775553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=84.08 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46778888888899999999999988888888888888899998889999999999988888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 015907 240 KDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p 257 (398)
|+++.|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 889999888888887776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-10 Score=92.65 Aligned_cols=104 Identities=14% Similarity=0.254 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5667788999999999999999999999999887654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHccC--------------HHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKD--------------YEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~--------------~~~A~~~~~~al~~~p~ 258 (398)
+|.++...|+ +.+|++++++++..+|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 9999999887 56777777777777777
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-10 Score=91.46 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
+....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|. +...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 3456688999999999999999999999999887653 468999999999999999999999999999999 899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a 287 (398)
.+|.++...|+...+...+..+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH
Confidence 9999999999887777665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-11 Score=80.45 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK-DYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 257 (398)
+.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444444555555555555555555555555544445555555555544 34555555555544444
|
... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=100.81 Aligned_cols=199 Identities=16% Similarity=0.080 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSIS-P-KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+...++..+...++.+.++..++..+... + .++.+....|.++...|++++|+..+.+. .+.+.......++
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~ 141 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQIL 141 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHH
Confidence 344444544444345666676666555432 2 24556666778888899999999988764 5678888888999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK--KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
..+++++.|.+.++.+-+.+.+ ..-+....+++....| ++.+|...|++...
T Consensus 142 L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------------------------- 195 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD------------------------- 195 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-------------------------
Confidence 9999999999999999888876 5555555555666655 69999999988632
Q ss_pred ccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChHH
Q 015907 315 QKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKV-GDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 315 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 390 (398)
..+.. ....++.++..+|+|++|...+.+++..+|++++++.+++.+...+|+. +.+.+++.+....+|+++-+
T Consensus 196 --~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 196 --KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp --CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred --ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 22222 3334999999999999999999999999999999999999999999998 66778888888899987654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=102.76 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+...|..++..|+|++|+.+|.++++++|+++.++..+|.++..+|++++|+..+++++.++|. ++.+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCchHHHHHHHHHHHH
Q 015907 275 KKPDEAVQFLLASRER 290 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~ 290 (398)
|++++|+..|++++++
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999763
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=91.79 Aligned_cols=117 Identities=8% Similarity=0.023 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 247 (398)
.+..+...+...++.++.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555556665555555554 5678999999999999999999999999887653 4589999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHH-------HcCCchHHHHHHHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALL-------AAKKPDEAVQFLLASRER 290 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~-------~~~~~~~A~~~~~~a~~~ 290 (398)
+|++++.+.|. ....+..+|.++. ..|++++|+..+.++...
T Consensus 94 ~~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 94 YYFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999998 8888888888888 888988887777776554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-11 Score=80.28 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 223 (398)
++..|..+|.+++..|++++|+.+|.++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999987
|
... |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-09 Score=90.87 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=160.1
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
.+++.-|+.+++-.+.......+...+-++.| +| +++|...|.-+...+ ..+...+.+++-+++-.|
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~---------~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD---------DAPAELGVNLACCKFYLG 105 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC---------CCCcccchhHHHHHHHHH
Confidence 34455555555443332222222222225666 77 888888888776544 455567888888888888
Q ss_pred cHHHHHHHHHHHHh--------------cCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 173 VLQTRLKKYEETLS--------------ISP------------KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 173 ~~~~A~~~~~~~l~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
.|.+|...-.++-+ ++. +..+-...+|.+++..-.|++|++.|++++..+|+..
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 88888776655421 110 1112234455666666677777777777777777776
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC-CCCchhhhccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG-KSDDLSVKDGR 305 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~ 305 (398)
..-..++.||.++.-++-+.+.+.-.+...|+ .+.+....+..+++.=+-..|.........-.... |. ...+-+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f---~~~l~r 261 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF---IEYLCR 261 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh---HHHHHH
Confidence 66677777777777777777777777777777 66666666666555433333333332221111100 00 000000
Q ss_pred ccc---ccccccccCCC------chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 015907 306 SGD---KKETEPQKVDP------IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERM 376 (398)
Q Consensus 306 ~~~---~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 376 (398)
... ..-+.+++.-| .++..++...|.++++..+|...... ++|..+.-+...|.+....|+--...++
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 000 00111222223 25667789999999999999988764 6899999999999999999886555555
Q ss_pred HHHH
Q 015907 377 FIQA 380 (398)
Q Consensus 377 ~~~a 380 (398)
++-|
T Consensus 339 lKiA 342 (557)
T KOG3785|consen 339 LKIA 342 (557)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=91.59 Aligned_cols=188 Identities=10% Similarity=0.005 Sum_probs=156.2
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
+.+..+|++|++++..-.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..++..+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG 327 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 327 (398)
....+... |.........-+.+....+++..+..+.++. -..+..+...+.|
T Consensus 100 V~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl---------------------------p~en~Ad~~in~g 151 (459)
T KOG4340|consen 100 VAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL---------------------------PSENEADGQINLG 151 (459)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhc---------------------------cCCCccchhccch
Confidence 88776543 2212334455566677788888887776443 1123346677799
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.+..+.|++++|+.-|+.+++...-.+-.-++++.+++..|++..|..+....++.
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999998888899999999999999999999887766653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=101.64 Aligned_cols=203 Identities=18% Similarity=0.164 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-P-SDPDVFRLLGE 234 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~la~ 234 (398)
.......+..++...|+++..+.-... ..+....+...++..+...++.+.++..++..+... + .++.+....|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 445667788889999998876655433 223345566677776665566777777666655432 2 23455566678
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++...|++++|++.+.+. . +.+.......++...++++.|.+.++.+.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-------------------------- 158 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----G-SLELLALAVQILLKMNRPDLAEKELKNMQ-------------------------- 158 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHH--------------------------
T ss_pred HHHHcCCHHHHHHHHHcc-----C-cccHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Confidence 888899999999988764 4 78888889999999999999999998873
Q ss_pred ccCCCchHHHHHHH--HHHhCC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 315 QKVDPIQVELLLGK--AYSDGG--RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 315 ~~~~~~~~~~~la~--~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
..+.+.....++. +....| .+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|+++++
T Consensus 159 -~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 159 -QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred -hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 3444555555444 333344 69999999999888778899999999999999999999999999999999999999
Q ss_pred HHHhh
Q 015907 391 LVDQY 395 (398)
Q Consensus 391 ~~~l~ 395 (398)
+.|+.
T Consensus 238 LaNli 242 (290)
T PF04733_consen 238 LANLI 242 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=92.87 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG---DYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
|++...|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++.+. ...++...+++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999887764 4568999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
||..+++.|+|.+|+..++..+...|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-10 Score=98.02 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SD----PDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~ 246 (398)
++++|...|.++ |.+|...|++++|.+.|.++....- ++ ...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 666666666654 6777788888888888888766432 11 23556666776665 999999
Q ss_pred HHHHHHHhhCCC-----CCHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 247 AAYRVSTMVSKD-----INFEVLRGLTNALLAA-KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 247 ~~~~~al~~~p~-----~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
.+|++++.+.-. .-...+..+|.+|... |++++|+.+|+++......... .....
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-------------------~~~a~ 155 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-------------------PHSAA 155 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--------------------HHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-------------------hhhHH
Confidence 999999886321 1244788899999998 9999999999999887653311 01112
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-------FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.....+|.++...|+|++|+..|++.....-++ ...++..+.|+...|++..|...+++....+|...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 344559999999999999999999998753221 13566788899999999999999999999998653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=99.24 Aligned_cols=205 Identities=14% Similarity=0.036 Sum_probs=139.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISP--KD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SD----PDVF 229 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 229 (398)
...|.+|...+++++|..+|.++....- ++ ..++...+.+|... ++++|+.+|++++.+.- +. ..++
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3346777888899999999988865431 11 34666777777665 99999999999998632 22 4578
Q ss_pred HHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 230 RLLGEVKYEL-KDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 230 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
..+|.+|... |++++|+++|++++.+.... ....+..+|.++...|+|++|+..|++........+.
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l------- 190 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL------- 190 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-------
Confidence 8999999998 99999999999999874221 1346788999999999999999999887663221100
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHH--HcCCHHHHHHH
Q 015907 304 GRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-----RGYLAKGIILK--ENGKVGDAERM 376 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~--~~g~~~~A~~~ 376 (398)
........++..+.++...|++..|...+++....+|... .....+-.++. ....+.+|+.-
T Consensus 191 -----------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 191 -----------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp -----------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred -----------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0111123444578899999999999999999999888653 33444444443 33457777777
Q ss_pred HHHHHhhCC
Q 015907 377 FIQARFFAP 385 (398)
Q Consensus 377 ~~~al~~~p 385 (398)
|...-.++|
T Consensus 260 ~d~~~~ld~ 268 (282)
T PF14938_consen 260 YDSISRLDN 268 (282)
T ss_dssp HTTSS---H
T ss_pred HcccCccHH
Confidence 776665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-09 Score=84.70 Aligned_cols=122 Identities=18% Similarity=0.087 Sum_probs=104.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKY 237 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 237 (398)
........++...+...++..+..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3334446889999999999999999998 5678889999999999999999999999987655 357888999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..|++++|+..++.+ ...+- .+.++..+|.++...|++++|+..|+++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAF-KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcch-HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999999999773 22333 5778899999999999999999999876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-08 Score=88.31 Aligned_cols=233 Identities=11% Similarity=0.047 Sum_probs=189.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
++ +..|..+|++++..+ ..+...|...+.+-+.......|...+++++.+-|.-...|+....+--.+|+
T Consensus 86 q~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 55 888999999999887 77888899999999999999999999999999999988899998888888999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..-|...|++.++..|+ ..+|......-..-++.+.|...|++.+-..|+ ...|...+..-...|+..-|...|.+|
T Consensus 157 i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~--v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK--VSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc--HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999886 568888777778888999999999999988886 888999999999999999999999999
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND--FRGYLAKGIILK 365 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 365 (398)
...+.+. ..........|..-..++.++.|..+|.-++..-|.+ ...+-.+...-.
T Consensus 234 ie~~~~d----------------------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 234 IEFLGDD----------------------EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHhhhH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8765432 0011223336666678889999999999999988887 445555555555
Q ss_pred HcCCH---HHHH-----HHHHHHHhhCCCChHHHHHhh
Q 015907 366 ENGKV---GDAE-----RMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 366 ~~g~~---~~A~-----~~~~~al~~~p~~~~~~~~l~ 395 (398)
+-|+. ++++ -.|++.+..+|.|.++|++..
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 66664 3333 347888899999999998754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-11 Score=83.50 Aligned_cols=81 Identities=31% Similarity=0.473 Sum_probs=54.7
Q ss_pred hccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
.|+++.|+..|+++++..|. +...++.+|.+|+..|+|++|+.++++ .+.+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777764 345566677777777777777777777 666666666666677777777777777777
Q ss_pred HHHH
Q 015907 249 YRVS 252 (398)
Q Consensus 249 ~~~a 252 (398)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-08 Score=104.35 Aligned_cols=255 Identities=15% Similarity=0.071 Sum_probs=136.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCCCC--HHHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLS----ISPKD--STALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~--~~~~~~la~~ 201 (398)
.| ++.|...+..++... +.. .......++..+|.++...|++++|...+++++. ..+.. ..++..+|.+
T Consensus 465 ~g~~~~A~~~~~~al~~~---~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 465 DGDPEEAERLAELALAEL---PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred CCCHHHHHHHHHHHHhcC---CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45 555655555555421 000 0011224555566666666666666666555541 11111 2344555566
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CCHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKP-----S---DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD----INFEVLRGLTN 269 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~la~ 269 (398)
+...|++++|...+++++.... . ....+..+|.++...|++++|...+.+++..... .....+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6666666666666665555311 0 1123344555555566666666666655543211 01233444555
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCC-ch-----------hhhcccccc--ccccccccCCCc------hHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSD-DL-----------SVKDGRSGD--KKETEPQKVDPI------QVELLLGKA 329 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~-----------~~~~~~~~~--~~~~~~~~~~~~------~~~~~la~~ 329 (398)
++...|++++|...+.++.......... .. ....+.... ..+.......+. .....++.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 6666666666666665554433222100 00 000000000 000000111101 113458999
Q ss_pred HHhCCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 330 YSDGGRVSDAVAVYDRLISSYP------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++.+....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999987532 234578899999999999999999999999986543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-09 Score=84.06 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|....+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
..-|++.-|.+.+.+-.+.+|+ +|---..+- +-...-++.+|..-+.+-.+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~--------------------------- 194 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLY-LNEQKLDPKQAKTNLKQRAE--------------------------- 194 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCC-ChHHHHHHH-HHHhhCCHHHHHHHHHHHHH---------------------------
Confidence 9999999999999999999998 664222111 11233456667665533211
Q ss_pred CCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 317 VDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPND-------FRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 317 ~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
....+.|-+ +...|...=..+ ..++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 195 ~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 195 KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111122322 332222211111 1222222222222 3567777777777888888877777766543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=87.61 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.....|+.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..+++++.+.|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345678999999999999999999999999887763 45899999999999999999999999999999999999999
Q ss_pred HHHHH-------HccCHH-------HHHHHHHHHHhhCCC
Q 015907 233 GEVKY-------ELKDYE-------GSAAAYRVSTMVSKD 258 (398)
Q Consensus 233 a~~~~-------~~g~~~-------~A~~~~~~al~~~p~ 258 (398)
|.++. ..|+++ +|+.+|++++..+|.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 98888 777766 556666667777776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=82.42 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRG 266 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 266 (398)
+..++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+.+|++++...|+. .+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999998876 5789999999999999999999999999998872 2678999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+|.++...|++++|+.++.+++...+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 99999999999999999999877544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=77.18 Aligned_cols=64 Identities=20% Similarity=0.390 Sum_probs=60.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999985
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-08 Score=88.40 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=181.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
..+...|...|..-..++++..|...|++++..+..+...|...+.+-++......|..++.+++.+-|.....|+....
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 56667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+-..+|+...|...|++-+...|+ ..+|......-.+.+..+.|...|++.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~--eqaW~sfI~fElRykeieraR~IYerf--------------------------- 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPD--EQAWLSFIKFELRYKEIERARSIYERF--------------------------- 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhhHHHHHHHHHHHH---------------------------
Confidence 999999999999999999999996 889999999999999999999999887
Q ss_pred ccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 315 QKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 315 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+-.+|. ..|...+..-.+.|+..-|..+|..|++.-.++ .......|..-..+..++.|.-.|+-|+..-|.+
T Consensus 201 V~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred heecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334554 345558888899999999999999999865554 3456667777778889999999999999988876
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.8e-09 Score=87.36 Aligned_cols=287 Identities=14% Similarity=0.071 Sum_probs=173.0
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
+.+...+.++.++++++....+..|.+.-.... +|.| .. +..|...|++.-.+. |......+..+.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSl-LgyCYY~~Q~f~~AA~CYeQL~ql~---------P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSL-LGYCYYRLQEFALAAECYEQLGQLH---------PELEQYRLYQAQ 86 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHH
Confidence 344456778888888888877788766666666 6766 23 677777777776666 776666667777
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
.++..+.+.+|+...........-...++..-+.+.+..+++..+..+.++.- ..++.....+.|.+.++.|+++.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHH
Confidence 77777777777776665543311112344445555666666666665554431 1245678889999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hcCCCCCchhhhccccccccccccccCCC---chH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER-LSTGKSDDLSVKDGRSGDKKETEPQKVDP---IQV 322 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 322 (398)
+-|+.+++...- .+-.-++++.++++.++++.|+++..+.+.. ....|+-.+.....-.....+...+.... ..+
T Consensus 165 qkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 999999999877 8888899999999999999999999877654 44455533322221111111100000000 012
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSY--PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
....+.++.+.|+++.|.+.+...--.. .-++..+.+++..- ..+++.+..+-++-.+.++|--++.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHH
Confidence 2235566677777777665543221000 01233444444322 22334444444444555555333333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=76.10 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD 225 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 225 (398)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 355566666666666666666666666666666666666666666666666666666666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=83.93 Aligned_cols=103 Identities=8% Similarity=0.014 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
++.....+..|.-++..|++++|...|+-..-.+|.+++.|..||.++..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCC
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
|+..+|+...|+.+|+.++. .|.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 99999999999999999998 454
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-09 Score=93.80 Aligned_cols=146 Identities=9% Similarity=0.028 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHH---hccCCCCCCCCCCChHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015907 131 VGVAVVIFGLVF---ALGDFLPSGSVSPTEEAGVVNKELSEEEK---------NVLQTRLKKYEETLSISPKDSTALEGA 198 (398)
Q Consensus 131 ~~~A~~~~~~a~---~~~~~~~~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~l 198 (398)
...|..+|.+++ .++ |..+.++-.++.|+... .+..+|....+++++++|.++.++..+
T Consensus 274 ~~~Al~lf~ra~~~~~ld---------p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~ 344 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ---------TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIM 344 (458)
T ss_pred HHHHHHHHHHHhhcccCC---------cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 788999999999 888 99999999999988765 356788999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH-HHHHHHHHHcCCc
Q 015907 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL-RGLTNALLAAKKP 277 (398)
Q Consensus 199 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~la~~~~~~~~~ 277 (398)
|.++...++++.|...|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|. ...+- ..+-.-.+-....
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~-~~~~~~~~~~~~~~~~~~~ 423 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR-RRKAVVIKECVDMYVPNPL 423 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch-hhHHHHHHHHHHHHcCCch
Confidence 999999999999999999999999999999999999999999999999999999999998 44332 2333213445667
Q ss_pred hHHHHHHHH
Q 015907 278 DEAVQFLLA 286 (398)
Q Consensus 278 ~~A~~~~~~ 286 (398)
+.|+.+|-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 888888743
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=79.22 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|. +..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASRE 289 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~~ 289 (398)
.|++++|...+.++.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999988754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-08 Score=84.93 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELG---------------D---YTRAVSLLQDL 218 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a 218 (398)
+.+.+|.+++..+++++|+..|++.++.+|++ +.+++.+|.++...+ | ..+|+..|++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999887 457888898865544 1 25788999999
Q ss_pred HHhCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCchH
Q 015907 219 AKEKPSDPDV-----------------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 219 l~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~~ 279 (398)
++..|+...+ -+.+|..|.+.|.|..|+.-++.+++..|+. ..+++..++.+|...|..++
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 9999986321 2356788999999999999999999998873 46689999999999999999
Q ss_pred HHHHHHH
Q 015907 280 AVQFLLA 286 (398)
Q Consensus 280 A~~~~~~ 286 (398)
|..+...
T Consensus 231 a~~~~~~ 237 (243)
T PRK10866 231 ADKVAKI 237 (243)
T ss_pred HHHHHHH
Confidence 9987644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=90.85 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 015907 157 EEAGVVNKELSE-EEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS---DPDVF 229 (398)
Q Consensus 157 ~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 229 (398)
....++..+..+ ...|+|++|+..|+..+..+|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456778888876 56799999999999999999998 579999999999999999999999999998876 47889
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHH
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
+.+|.++..+|++++|+..|+++++..|+ ...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~-s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG-TDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHH
Confidence 99999999999999999999999999998 5543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-07 Score=79.61 Aligned_cols=223 Identities=22% Similarity=0.269 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCC--hHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcC
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPT--EEAGVVNKELSEEEKNVLQTRLKKYEETLS--ISPKDSTALEGAAVTLAELG 206 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g 206 (398)
...+...+...+... +. ........+..+...+.+..+...+...+. ..+.....+...+..+...+
T Consensus 39 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 39 LAEALELLEEALELL---------PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HHHHHHHHHHHHhcC---------ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh
Confidence 444555555555444 33 356778888999999999999999999987 68888899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGE-VKYELKDYEGSAAAYRVSTMVSK--DINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
++..++..+..++...+.........+. ++...|+++.|...|.+++...| ..........+..+...++++.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 9999999999999988877555666666 89999999999999999988776 22566677777778899999999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 015907 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII 363 (398)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 363 (398)
+.++....+.. ....+..++..+...+++++|+..+..++...|.....+..++..
T Consensus 190 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 190 LEKALKLNPDD------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHhhCccc------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 98886632210 235566699999999999999999999999999877888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q 015907 364 LKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
+...+.++++...+.+++...|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 246 LLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888899999999999999886
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-09 Score=81.09 Aligned_cols=118 Identities=26% Similarity=0.287 Sum_probs=82.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCch
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~ 278 (398)
..+++..+...++.+++..|+. ..+.+.+|.++...|++++|+..|+.++...|+. ...+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888888888877 4567778888888888888888888888876551 1346677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+|+..++.... ......+...+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~~~--------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPD--------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccC--------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888744200 01111233447777777777777777777653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-10 Score=80.31 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 204 ELGDYTRAVSLLQDLAKEKPS--DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
.+|+|+.|+.+++++++..|. +...++.+|.+++..|++++|+.++++ ...+|. ++..++.+|.++..+|++++|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 368999999999999999995 466788899999999999999999999 888887 7888889999999999999999
Q ss_pred HHHHHH
Q 015907 282 QFLLAS 287 (398)
Q Consensus 282 ~~~~~a 287 (398)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-09 Score=97.76 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=104.2
Q ss_pred hCCCCHHHH--HHHHHHHHHccC---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch--------HHHHHHHHH
Q 015907 221 EKPSDPDVF--RLLGEVKYELKD---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD--------EAVQFLLAS 287 (398)
Q Consensus 221 ~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a 287 (398)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|+ +..++..++.++.....+. .+.....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345555554 444555554433 77899999999999998 8888888877775543322 222222222
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
.. +..++. .++.-+|..+...|++++|...+++++.++| +..+|..+|.++.
T Consensus 411 ~a-------------------------l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 411 VA-------------------------LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred hh-------------------------cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 11 112333 3444588888889999999999999999999 5889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChH
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..|++++|++.|++|+.++|.++.
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999999874
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=91.06 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 015907 161 VVNKELSEEEKN---VLQTRLKKYEETL---SISPKDSTALEGAAVTLAEL---------GDYTRAVSLLQDLAKEKPSD 225 (398)
Q Consensus 161 ~~~la~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 225 (398)
.+..|......+ ..+.|+.+|.+++ +++|+...++..++.|+... .+..+|..+.+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 366676665544 4678999999999 99999999999999998765 34568889999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+.++..+|.++...++++.|+..|++++.++|+ .+.+|+..|.+....|+.++|++.++++++
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 999999999999999999999999999844
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=91.68 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=109.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
+-......++++.|+..|++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 334455668999999999999988865 66779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.|+.+.++++...|. +...|..|+.+|...|+++.|+..+..+
T Consensus 252 lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999 9999999999999999999999887544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-09 Score=91.47 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
.....|..+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+..+.++|.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34567889999999999999999988753311 237899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhc
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA-VQFLLASRERLS 292 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~ 292 (398)
+..+++..|.++..+|+++.|+..|++++++.|. +-.+...+..+..+..++.+. .+.|..+.....
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999 999999998888776666554 667776655443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-08 Score=94.69 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHcCCc
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL--------KDYEGSAAAYRVSTMV--SKDINFEVLRGLTNALLAAKKP 277 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~~la~~~~~~~~~ 277 (398)
...|+.+|+++++++|++..++-.++.++... .+...+....++++.+ +|. ++.++..+|..+...|++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~-~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV-LPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC-ChHHHHHHHHHHHhcCCH
Confidence 44555666666666666555555555544332 1233444444554443 444 455566666666666666
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++|...+++++. .+|. ..+..+|.++...|++++|+..|++++.++|.++.
T Consensus 437 ~~A~~~l~rAl~---------------------------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAID---------------------------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHH---------------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 666666666644 2222 23444666666666666666666666666666553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=82.31 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=97.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHH
Q 015907 184 TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 184 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
+..+.++..+..+..|.-++..|++++|..+|+-+...+|.+++.|..||.|+..+++|++|+..|..+..++++ ++..
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCc
Confidence 344555667788999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
.+..|.+++..|+.+.|..+|..++.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999988854
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-07 Score=96.34 Aligned_cols=272 Identities=11% Similarity=-0.059 Sum_probs=179.5
Q ss_pred hcCCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 112 YDAPIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 112 ~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
..+|.-...... +....| ++.+...+..+.....-................++.++...|++++|...+++++...|.
T Consensus 406 ~~~~~l~~~~a~-~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 484 (903)
T PRK04841 406 LENPRLVLLQAW-LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL 484 (903)
T ss_pred hcCcchHHHHHH-HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 345665554433 333466 888888888775442111100011224556667899999999999999999999986554
Q ss_pred CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 191 DS-----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 191 ~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
.. .++..+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+++++......
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 32 356788999999999999999999998764321 2456788999999999999999999998863210
Q ss_pred -------CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC----------Cchhhhcccccc--cccccccc----
Q 015907 260 -------NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----------DDLSVKDGRSGD--KKETEPQK---- 316 (398)
Q Consensus 260 -------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~---- 316 (398)
....+..+|.++...|++++|...+.++......... +.+....++... ..+..+..
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 1234567899999999999999999998876553322 111222232222 11111110
Q ss_pred CC-CchHHHH----HHHHHHhCCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 317 VD-PIQVELL----LGKAYSDGGRVSDAVAVYDRLISSYPNDF----RGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 317 ~~-~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.. +...... ....+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 1111111 22445567899999998877654322222 225689999999999999999999998763
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=92.37 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 344 (398)
...|..|++.|+|..|...|++++..+......+.. ..+.......-.+.+++.|+.++++|.+|+..+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e----------e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE----------EQKKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH----------HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 345566666666666666666665554432110000 0000001112356679999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 345 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++|+++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...+.
T Consensus 282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999987766553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-08 Score=81.82 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC-
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELG- 206 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g- 206 (398)
+..|+..|..++... | .+|-.+.+.+.+|.+++..|+++.|+..|++.+...|+++ .+++.+|.+++.+.
T Consensus 21 y~~Ai~~f~~l~~~~---P---~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRY---P---NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHHHHHHHHHHHH----T---TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC---C---CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 555555555554333 0 0144556788999999999999999999999999999874 58888888876543
Q ss_pred ----------CHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 207 ----------DYTRAVSLLQDLAKEKPSDPDV-----------------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 207 ----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
...+|+..|+..++..|+...+ -+.+|..|...|.+..|+..++.+++..|+.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 3458999999999999987422 3456888999999999999999999999982
Q ss_pred --CHHHHHHHHHHHHHcCCchHHH
Q 015907 260 --NFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 260 --~~~~~~~la~~~~~~~~~~~A~ 281 (398)
..+++..++.++...|..+.|.
T Consensus 175 ~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 175 PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHHHhCChHHHH
Confidence 2347889999999999988544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9e-10 Score=93.76 Aligned_cols=225 Identities=8% Similarity=-0.031 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.-..|..|+.+|.|++|+.||.+++..+|.++..+.+.|.+|+++..|..|...+..++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHH----------HHHHHhcCCCCCchhhhcccccc--
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLL----------ASRERLSTGKSDDLSVKDGRSGD-- 308 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~-- 308 (398)
...+|.+.++.++.+.|+ +.+....++.+-. ..++..... ...+.++....+......+....
T Consensus 180 ~~~EAKkD~E~vL~LEP~-~~ELkK~~a~i~S----l~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK-NIELKKSLARINS----LRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred hHHHHHHhHHHHHhhCcc-cHHHHHHHHHhcc----hHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence 999999999999999999 7765554443322 222111100 00111111111111111111111
Q ss_pred ccccccccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 309 KKETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.++......+.....+. -+..|....++++|+.-..+++..+|.........+..---.|...++...++.++.+.|.+
T Consensus 255 ~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 255 VDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred eEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence 22222222222211111 25667777788888888888887777665555555555556677778888888888888876
Q ss_pred hHH
Q 015907 388 VKA 390 (398)
Q Consensus 388 ~~~ 390 (398)
..+
T Consensus 335 ~~~ 337 (536)
T KOG4648|consen 335 ETP 337 (536)
T ss_pred ccc
Confidence 544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-08 Score=78.77 Aligned_cols=193 Identities=16% Similarity=0.128 Sum_probs=135.4
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.|+. .| ...|..-|.+++++. |..+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|.
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~---------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIR---------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcC---------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 5666 78 889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHHcCCchH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY-RVSTMVSKDINFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~~la~~~~~~~~~~~ 279 (398)
.++--|+|.-|.+-+.+..+.+|++|---..+-..- ..-++.+|...+ +++-..+.+ ...|...+. ..|+..+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e--~WG~~iV~~---yLgkiS~ 215 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE--QWGWNIVEF---YLGKISE 215 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh--hhhHHHHHH---HHhhccH
Confidence 999999999999999999999999874322221111 223566665544 444443322 233322222 2233221
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 280 AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 280 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
...++++..-..++.. ....-.+.++.+|..+...|+.++|...|.-++..+-
T Consensus 216 -e~l~~~~~a~a~~n~~------------------~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 216 -ETLMERLKADATDNTS------------------LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -HHHHHHHHhhccchHH------------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1223232221111100 0011135677899999999999999999999987543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-07 Score=84.37 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------------------------------------------------
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSIS------------------------------------------------- 188 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------------------------------------------------- 188 (398)
...|..+|..|.+.|.+++|...|++++..-
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 3578899999999999999999999887531
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHccCHHH
Q 015907 189 ------------------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAK-EKPSD-----PDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 189 ------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~ 244 (398)
|++..-|.. .+-...|+..+-+..|..+++ .+|.. ...|..+|..|...|+.+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 111111211 222334667777777777765 35532 3578899999999999999
Q ss_pred HHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 245 SAAAYRVSTMVSKDI---NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 245 A~~~~~~al~~~p~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
|...|+++++..-.. -..+|...|..-....+++.|+.+++.+... |..+. + ..+....-.++.-.....
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~--~----~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPE--L----EYYDNSEPVQARLHRSLK 478 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchh--h----hhhcCCCcHHHHHHHhHH
Confidence 999999998875331 2457888888888999999999998887543 22211 0 000000000000000012
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA--PEKVKALV 392 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 392 (398)
+|..++......|-++....+|++.+++.--.|....+.|..+....-++++.+.|++.+.+. |.-.+.|+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 333355555555666666666666666555555566666666655555566666555555543 34444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-08 Score=83.42 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA 159 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~ 159 (398)
.++...+.......++|+....+.+..-.+....+. ++|.. .| +.+++.+-...+.. ..+..+......
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~-~lG~l~~a~s~~g~y~~mL~~a~sqi~~---a~~~~ds~~~~e 84 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFR-VLGCLVTAHSEMGRYKEMLKFAVSQIDT---ARELEDSDFLLE 84 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHH-HhccchhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344455555566666777777666655433333333 36655 33 44333332222211 111111223346
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDV 228 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 228 (398)
++.+++..+....++.+++.+-...+.+.... ..+...++..+.-++.++++++.|+++++....+ ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 78899999999999999999888888764333 2467779999999999999999999999875432 347
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---C------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---N------FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
+..||..+....++++|+-+..++.++.... + .-+++.++..+..+|..-.|.++.+++.++.-..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~----- 239 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH----- 239 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh-----
Confidence 8899999999999999999999998874321 2 2256788999999999999999999987753222
Q ss_pred hhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCH-
Q 015907 300 SVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKV- 370 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~- 370 (398)
...+.. ....+|++|...|+.+.|..-|++++..-.. ...++...+.++....-.
T Consensus 240 ----------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~ 303 (518)
T KOG1941|consen 240 ----------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQN 303 (518)
T ss_pred ----------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 111112 2223999999999999999999999864321 234555555555443322
Q ss_pred ----HHHHHHHHHHHhhCC
Q 015907 371 ----GDAERMFIQARFFAP 385 (398)
Q Consensus 371 ----~~A~~~~~~al~~~p 385 (398)
-.|+++-++++++..
T Consensus 304 k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 304 KICNCRALEFNTRLLEVAS 322 (518)
T ss_pred cccccchhHHHHHHHHHHH
Confidence 337777777776543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-07 Score=91.76 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=185.0
Q ss_pred HHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCCHHH
Q 015907 136 VIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI-SPKD----STALEGAAVTLAELGDYTR 210 (398)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~----~~~~~~la~~~~~~g~~~~ 210 (398)
.-|.+.+.-. |+....|...-.-+.+.++.+.|....++++.. ++.. ..+|..+-++...-|.-+.
T Consensus 1445 eDferlvrss---------PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1445 EDFERLVRSS---------PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred HHHHHHHhcC---------CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3455555555 999999999888899999999999999999974 4433 3466666666666787788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
-.+.|++|.+... ...++..|..+|...+.+++|.++|+..++...+ ...+|..++..++.+++-+.|..++.+|++.
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 8889999988643 2467888999999999999999999999999887 8999999999999999999999999999886
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKV 370 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 370 (398)
++.. ..-......|.+-++.|+.+.+...|+-.+.-+|.-.+.|.-+...-.+.|+.
T Consensus 1594 lPk~-----------------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1594 LPKQ-----------------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred cchh-----------------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 6532 11233444889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC--CCChHHHHH
Q 015907 371 GDAERMFIQARFFA--PEKVKALVD 393 (398)
Q Consensus 371 ~~A~~~~~~al~~~--p~~~~~~~~ 393 (398)
+.+..+|++++.+. |.....++.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHH
Confidence 99999999998764 544444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-06 Score=73.20 Aligned_cols=189 Identities=15% Similarity=0.176 Sum_probs=138.3
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 229 (398)
..+..|+..|......|++++|+..|+.+...+|..+ .+...++.++++.+++++|+...++.+.+.|.++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3456899999999999999999999999999888764 5889999999999999999999999999988764 467
Q ss_pred HHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 230 RLLGEVKYEL--------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 230 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
+..|.+++.. .-..+|+..|+..+...|+ ..-+-. |..-+..+...
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn-S~Ya~d--------------A~~~i~~~~d~----------- 165 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN-SRYAPD--------------AKARIVKLNDA----------- 165 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC-Ccchhh--------------HHHHHHHHHHH-----------
Confidence 7777776542 2245677788888888887 322111 11111000000
Q ss_pred hccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 302 KDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFI 378 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~ 378 (398)
-..-...+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.
T Consensus 166 -----------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 166 -----------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred -----------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 01222348889999999999999999999877765 4678888889999999988877654
Q ss_pred HHHhhCCCC
Q 015907 379 QARFFAPEK 387 (398)
Q Consensus 379 ~al~~~p~~ 387 (398)
-.-.-.|++
T Consensus 229 vl~~N~p~s 237 (254)
T COG4105 229 VLGANYPDS 237 (254)
T ss_pred HHHhcCCCC
Confidence 433334554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=85.54 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred HHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH
Q 015907 261 FEVLRGLTNAL-LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA 339 (398)
Q Consensus 261 ~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 339 (398)
...++..+..+ ...|+|++|+..|+..++..|.. .....+++|+|.+|...|++++|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----------------------~~a~~A~y~LG~~y~~~g~~~~A 199 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----------------------TYQPNANYWLGQLNYNKGKKDDA 199 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----------------------cchHHHHHHHHHHHHHcCCHHHH
Confidence 34555555554 45577777777776665544322 11135667777777777777777
Q ss_pred HHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 340 VAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 340 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
+..|++++..+|++ +++++.+|.++..+|++++|+..|+++++..|+...+
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77777777776664 6677777888877888888888888888877776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-07 Score=76.46 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=67.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
|.++..-|++++|++..... . +.++...-..++.++.+.+-|...++++..
T Consensus 115 a~i~~~~~~~deAl~~~~~~-----~-~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----------------------- 165 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-----E-NLEAAALNVQILLKMHRFDLAEKELKKMQQ----------------------- 165 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-----c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------------
Confidence 45566666666666655542 1 344444445555555666666666555422
Q ss_pred ccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 313 EPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.+.......||..+.. .+++.+|.-+|++.-+..|..+......+.|+..+|++++|...++.++..+++++
T Consensus 166 ----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 166 ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred ----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 2222223334433322 23455555555555554455555555555555555555555555555555555555
Q ss_pred HHHHHh
Q 015907 389 KALVDQ 394 (398)
Q Consensus 389 ~~~~~l 394 (398)
+.+.|+
T Consensus 242 etL~Nl 247 (299)
T KOG3081|consen 242 ETLANL 247 (299)
T ss_pred HHHHHH
Confidence 555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=71.48 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 355666666666666666666666666666666666666666666666666666666555555543
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-06 Score=82.42 Aligned_cols=244 Identities=15% Similarity=0.051 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 84 FEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
++.|++.+......+++..|+....++++.+|+.+.+ ...
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a----------------------------------------~vL 48 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYA----------------------------------------KVL 48 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHH----------------------------------------HHH
Confidence 4556666666667777777777777777777655443 334
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.|..+.+.|..++|..+++..-...+++...+..+-.+|..++++++|..+|++++..+|. .+..+.+-.+|.+.+.|.
T Consensus 49 kaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence 5677778888888887777777777777778888888888888888888888888888887 667777777777777776
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHH-----HHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-----FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
+-.+.--+..+..|......|..+..++......++... +-+++.+.. +...
T Consensus 128 ~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~-----------------------l~~~ 184 (932)
T KOG2053|consen 128 KQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL-----------------------LEKK 184 (932)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH-----------------------hccC
Confidence 655555555556676223345555555555444444433 111111110 1111
Q ss_pred -C--chHH-HHHHHHHHhCCChHHHHHHHHH-HHH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 319 -P--IQVE-LLLGKAYSDGGRVSDAVAVYDR-LIS-SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 319 -~--~~~~-~~la~~~~~~g~~~~A~~~~~~-al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+ .... ...-.++..+|++++|+.++.. ..+ +.+.+...-......+...+++.+-.+...+++..++|+..++
T Consensus 185 gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~ 263 (932)
T KOG2053|consen 185 GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIY 263 (932)
T ss_pred CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHH
Confidence 1 1111 2245667788999999999943 333 3444555555677788899999999999999999999984443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-06 Score=80.71 Aligned_cols=258 Identities=12% Similarity=0.091 Sum_probs=189.4
Q ss_pred hhhcCCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 015907 110 IDYDAPIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSIS 188 (398)
Q Consensus 110 ~~~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 188 (398)
++..+|++.+.|+....+..| ..+-+..|..++..-+.... .......|...|..|...|+.+.|...|+++.+..
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka---~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA---VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC---CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 567888888888763333366 77888888888754422222 12334679999999999999999999999999875
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHH
Q 015907 189 PKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------------------DPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 189 p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~ 246 (398)
-.. ..+|...|..-....+++.|+.+.+++...-.. ...+|..++......|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 433 568999999999999999999999998754211 1346788888888899999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVEL 324 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 324 (398)
..|++++.+.-- .|....+.|..+....-++++.+.|++.+.++ .-|. +.|.
T Consensus 498 ~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF-------------------------k~p~v~diW~ 551 (835)
T KOG2047|consen 498 AVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF-------------------------KWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC-------------------------CCccHHHHHH
Confidence 999999998877 88999999999999999999999998875533 2233 3443
Q ss_pred H-HHHH--HHhCCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHhhh
Q 015907 325 L-LGKA--YSDGGRVSDAVAVYDRLISSYPND--FRGYLAKGIILKENGKVGDAERMFIQARFF-APEKVKALVDQYS 396 (398)
Q Consensus 325 ~-la~~--~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~ 396 (398)
. |-.. -......+.|...|+++++..|.. -.++...+..-.+-|--..|+..|++|-.. .+.+.-.++|.|-
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 3322 233446889999999999987743 235566677777778888888888887543 3333334444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-08 Score=81.54 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 232 (398)
.-.|..+.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+|+.|...|..+++..|+. +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 337899999999999999999999999999987 6799999999999999999999999999987765 6899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
|.+...+|+.++|...|+++++..|+ ...+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~-t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG-TDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 99999999999999999999999998 55544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-08 Score=72.72 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS---DPDVFRLLG 233 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 233 (398)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 56677777777777777777777777754433 346777777777777777777777777776666 556666677
Q ss_pred HHHHHccCHHHHHHHHHHHHh
Q 015907 234 EVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~ 254 (398)
.++...|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-06 Score=72.31 Aligned_cols=261 Identities=17% Similarity=0.112 Sum_probs=197.0
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhc-chh-----hc-HHHHHHHHHHHHhccCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGL-GTK-----IG-VGVAVVIFGLVFALGDFLPSGS 152 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~l-g~~-----~g-~~~A~~~~~~a~~~~~~~~~~~ 152 (398)
+|..-.-++-.......++++++|.+-|+.++.. ++...+|+ |+. .| .+.|..+-+.+....
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------- 184 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------- 184 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-------
Confidence 3444445566667777899999999999988743 33332222 222 78 899999999998888
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI---SPKDST-----ALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
|.-+.++...-...+..|+|+.|+++.+..... .++..+ .+...+... ...+...|...-.+++++.|+
T Consensus 185 --p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pd 261 (531)
T COG3898 185 --PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPD 261 (531)
T ss_pred --cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCc
Confidence 999888888888889999999999999876543 222211 222222222 345788999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
...+-..-+..++..|+..++-.+++.+.+..|. ++ ++.+|....--+.++.-++++.++..
T Consensus 262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH--P~----ia~lY~~ar~gdta~dRlkRa~~L~s------------ 323 (531)
T COG3898 262 LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH--PD----IALLYVRARSGDTALDRLKRAKKLES------------ 323 (531)
T ss_pred cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--hH----HHHHHHHhcCCCcHHHHHHHHHHHHh------------
Confidence 9888888999999999999999999999999986 44 45556666666677888887766543
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-GKVGDAERMFIQARFF 383 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 383 (398)
+..+.....+.++..-...|++..|..--+.+....|.. .++..++.+-... |+-.+...++-+++.-
T Consensus 324 ----------lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 ----------LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ----------cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 233344555668888899999999999999999988864 5677788887655 9999999999999863
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-09 Score=69.65 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=61.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+ ++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHHhc
Confidence 357899999999999999999999999999999999999999999999999999999 7877776664
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-06 Score=69.58 Aligned_cols=220 Identities=21% Similarity=0.228 Sum_probs=170.9
Q ss_pred HhHHHHHHhhcchhhcCCCc--hhhhhhhcchh---hc-HHHHHHHHHHHHh--ccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDAPIE--TEKKTIGLGTK---IG-VGVAVVIFGLVFA--LGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~--~~~~~~~lg~~---~g-~~~A~~~~~~a~~--~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
.....+...+...+...+.. ...... .+.. .+ +..+...+..... .. +.....+...+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 106 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLL-LALALLKLGRLEEALELLEKALELELL---------PNLAEALLNLGLLLE 106 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHH-HHHHHHHcccHHHHHHHHHHHHhhhhc---------cchHHHHHHHHHHHH
Confidence 34445556666666655542 222222 2222 45 7777777777765 34 778888999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAV-TLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A 245 (398)
..+++..++..+..++...+.........+. ++...|+++.|...+.+++...| .....+...+..+...++++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 9999999999999999988887666666666 89999999999999999988776 3456667777778889999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH
Q 015907 246 AAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL 325 (398)
Q Consensus 246 ~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (398)
+..+.+++...+......+..++..+...+++++|+..+..+....+ ........
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------~~~~~~~~ 241 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-------------------------DNAEALYN 241 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc-------------------------ccHHHHhh
Confidence 99999999998872378899999999999999999999988855222 11244555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
++..+...+.++++...+.+++...|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777777778899999999999999887
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=71.16 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 229 (398)
..+..++..|...+..|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345678999999999999999999999999988765 56899999999999999999999999999999774 578
Q ss_pred HHHHHHHHHccC---------------HHHHHHHHHHHHhhCCC
Q 015907 230 RLLGEVKYELKD---------------YEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 230 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~ 258 (398)
+..|.+++.+.. ...|...|++++...|+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999988776 77888888888888887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.6e-08 Score=87.44 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=103.7
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.+ ++.|+.+|++..... |. +...++.++...++-.+|+..+.+++...|.+...+...+..+...++
T Consensus 182 t~~~~~ai~lle~L~~~~---------pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD---------PE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred cccHHHHHHHHHHHHhcC---------Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 45 999999999988555 44 567789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
++.|+.+.+++++..|.+...|+.|+.+|...|+++.|+..++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999998887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=68.51 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=33.7
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 229 (398)
.++...+++++|+.++++++..+|+++..|..+|.++..+|++.+|+..++++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=67.80 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=63.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|..+|...+++++|+.++++++.++|+++..|..+|.++..+|++.+|+..|+++++..|+ ++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~-~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD-DPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC-cHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999998 777655444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=70.63 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
.+++.++.++...|+.++|+.+|++++..... ......+++.+|..+..+|++++|+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------------~~~~~~a~i~lastlr~LG~~deA~~ 59 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS----------------------GADRRRALIQLASTLRNLGRYDEALA 59 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46889999999999999999999999762110 11113466779999999999999999
Q ss_pred HHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 342 VYDRLISSYPN---DFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 342 ~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.+++++...|+ +..+...++.++...|+.++|+..+-.++.
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999898 778888999999999999999999988775
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.5e-07 Score=88.20 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=165.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 176 TRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSD----PDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
+..+.|++.+..+|+....|..+-..+.+.++.++|.+..+++|.. ++.. ..+|..+-++...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3467788899999999999999999999999999999999999984 4432 3466666666666677888889999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAY 330 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 330 (398)
+|.+... ...++..|..+|...+++++|.++|+.+.+.+.+ ...+|..+|..+
T Consensus 1522 RAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-------------------------~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1522 RACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-------------------------TRKVWIMYADFL 1574 (1710)
T ss_pred HHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-------------------------hhhHHHHHHHHH
Confidence 9988764 3678899999999999999999999999886542 246888899999
Q ss_pred HhCCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 331 SDGGRVSDAVAVYDRLISSYPN--DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 331 ~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++++-+.|...+.+|++.-|. ..+.....+++-++.|+.+.+...|+-.+..+|...+.|.-.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH
Confidence 9999999999999999999998 688888999999999999999999999999999999998743
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-08 Score=75.83 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDS-----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
.+-.-|.-++..|+|++|..-|..++...|..+ ..|.+.|.+++.++.++.|+..+.++++++|.+..++...+.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344567888999999999999999999998764 377889999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+|..+..+++|+..|.++++.+|. ...+...++.+--
T Consensus 177 ayek~ek~eealeDyKki~E~dPs-~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPS-RREAREAIARLPP 213 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHhcCH
Confidence 999999999999999999999998 6666665555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=78.95 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVY 343 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 343 (398)
.+..+.-++..|+|..|...|...++..+.. ....++++|||.+++.+|++++|...|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s----------------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS----------------------TYTPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------cccchhHHHHHHHHHhcccchHHHHHH
Confidence 5677777777888888888887776655533 344689999999999999999999999
Q ss_pred HHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 344 DRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 344 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..+++..|+. +++++.+|.+...+|+.++|...|+++++..|+...+...
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999988776 6899999999999999999999999999999998776543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-07 Score=77.18 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSI----SPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVF 229 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 229 (398)
+-.+..+..+.|.|++++.+--..+.. +.. .-+++.+++..+....++.+++.+-+..+.+-... ..+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 334556777788888776654443332 211 14588899999999999999999988888764332 3567
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
..++..+..++.++++++.|+++++...+ ....++..||.++....++++|+.+..++..+.....-.++
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~----- 200 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW----- 200 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch-----
Confidence 78999999999999999999999987533 12347889999999999999999999998876553310000
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY------PNDFRGYLAKGIILKENGKVGDAERMFI 378 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 378 (398)
......-..+.++..+..+|+...|.++.+++.++. +.......-+|.+|...|+.+.|..-|+
T Consensus 201 ----------~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 201 ----------SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred ----------hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 000001234458999999999999999999998753 2235677889999999999999999999
Q ss_pred HHHhhC
Q 015907 379 QARFFA 384 (398)
Q Consensus 379 ~al~~~ 384 (398)
+|....
T Consensus 271 ~Am~~m 276 (518)
T KOG1941|consen 271 QAMGTM 276 (518)
T ss_pred HHHHHH
Confidence 988653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-06 Score=67.04 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=98.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
.+.=|++....-..+.+...|.. .-.+.||..+.+.|++.+|...|++++.- .-+ ++..+..++.+.+..+++..|.
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHH
Confidence 33445555555555555555653 34456777777778888888877777653 333 6677777777777788877777
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
..+++..+.-+. ....+....+|.++..+|++.+|...|+.++...|+ +.+...++
T Consensus 145 ~tLe~l~e~~pa-----------------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 145 QTLEDLMEYNPA-----------------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred HHHHHHhhcCCc-----------------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 777665332211 112355666788888888888888888888887764 55666777
Q ss_pred HHHHHcCCHHHHHHHHH
Q 015907 362 IILKENGKVGDAERMFI 378 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~ 378 (398)
..+..+|+.++|...+.
T Consensus 201 e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 201 EMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHhcchhHHHHHHH
Confidence 78888887766655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=69.59 Aligned_cols=112 Identities=28% Similarity=0.263 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV 336 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 336 (398)
|+..+..++.-|...+..|+|++|++.|+......+.. .....+.+.++.+|...+++
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----------------------~ya~qAqL~l~yayy~~~~y 63 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG----------------------EYAEQAQLDLAYAYYKQGDY 63 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----------------------cccHHHHHHHHHHHHHccCH
Confidence 44456778888888888888888888887776554422 22346777789999999999
Q ss_pred HHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCChHH
Q 015907 337 SDAVAVYDRLISSYPNDF---RGYLAKGIILKENGK---------------VGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 337 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 390 (398)
++|+..+++.++++|.++ -+++..|.++..+.. ..+|...|++.+...|++..+
T Consensus 64 ~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 64 EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999999888774 478888888888776 789999999999999998654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-06 Score=70.77 Aligned_cols=213 Identities=14% Similarity=0.062 Sum_probs=158.4
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------------------H-HHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------------------S-TALEGAAVTLAELGDYTRAVSLLQ 216 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~ 216 (398)
+....|...-.++.....+++|..-++..-.++..+ | ......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344566666667777777777777666655443211 1 123445666677788887766554
Q ss_pred HHHHh------------CCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 217 DLAKE------------KPSD---------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 217 ~al~~------------~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
..... .|+. ..+.+.+..++.-.|+|.-....+.+.++.+|...+.....+|.+..+.|
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 44321 1111 12455677888889999999999999999996658889999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
+.+.|..+|+...+....-.+ .....-+..+.+.+|.-.+++.+|...|.+++..+|.++.
T Consensus 227 D~k~a~~yf~~vek~~~kL~~-------------------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDG-------------------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhc-------------------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 999999999977653321100 0111234445888899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+..+.|.|+.-.|+..+|++.++.++...|..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999999974
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-06 Score=68.70 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLS-ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRLLGEV 235 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 235 (398)
.-.+.+|....+.|++.+|...|++++. +..+++..+..++...+..+++..|...++++.+.+|. .++....+|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4577899999999999999999999986 56778899999999999999999999999999998874 46788889999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+...|.+.+|...|+.++.-.|+ +.+....+..+..+|+.++|..-+....+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg--~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPG--PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCC--HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999996 88888899999999999988887765544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=83.46 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA---LEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
..|+++.+|+++|.++...|+|++|+.+|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 458888888888888888888888888888888888888754 888888888888888888888888886
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-07 Score=80.99 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=66.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDV---FRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
.+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999854 9999999999999999999999999973
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=73.32 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
.+.+.|.++.+++.++.|+..+.++++++|.+..++...+.+|.++..+++|++-|++.++.+|...++.-
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 44458999999999999999999999999999999999999999999999999999999999999876543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-06 Score=66.95 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=125.2
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHccCHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP-----S-DPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~la~~~~~~g~~~~A 245 (398)
+.+++|.++|.++ |..|...++|..|-..|.++-+..- + -...|...+.+|.. +++.+|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHH
Confidence 4677777777765 4445555666666666666554321 1 13345555565554 589999
Q ss_pred HHHHHHHHhhCCCC-----CHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 246 AAAYRVSTMVSKDI-----NFEVLRGLTNALLAA-KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 246 ~~~~~~al~~~p~~-----~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
+.++++++++..+. -...+..+|.+|..- .++++|+.+|+++-........ ....
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-------------------~ssA 153 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-------------------VSSA 153 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-------------------hhhH
Confidence 99999998886541 122355788888654 8999999999998775543310 0111
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-------RGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+...+-.+..-...++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++-.+++|...+.+
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 12333377777888999999999999887554442 3455677788887888888899999999999876654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-06 Score=61.97 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD----PDVFRLLGEVK 236 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 236 (398)
+-..|....+.|+++.|++.|.+++.+.|..+.+|.+.+..+..+|+.++|++-+.+++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999986543 35788899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCC
Q 015907 237 YELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..+|+-+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.2e-08 Score=82.44 Aligned_cols=191 Identities=10% Similarity=-0.022 Sum_probs=139.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+...|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|+.++.+..|...+..++.++.. +..+|...+.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 5667999999999999999999999999999999999999999999999999999999999988 899999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCCC-Cchhhhcccccc-ccccccc-cCCCc---hHH----HHHHHHHHhCCChHHHHHHHH
Q 015907 275 KKPDEAVQFLLASRERLSTGKS-DDLSVKDGRSGD-KKETEPQ-KVDPI---QVE----LLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~---~~~----~~la~~~~~~g~~~~A~~~~~ 344 (398)
|...+|.+.++.++.+-+...+ ......+..+.+ ....++. ...|. ... ---|..+...|.++.++.+|.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~ 258 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVV 258 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEee
Confidence 9999999999998887666432 001111111111 1111111 00000 000 115666777788888888877
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 345 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.-+....++.....+ +..|.+..++++++.-..+++..+|..
T Consensus 259 ~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 259 SPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred ccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 666554444444444 667777788888888888888777654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-05 Score=62.16 Aligned_cols=195 Identities=16% Similarity=0.134 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLS-ISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+...++.....-++.+.-+.-+.+.+. ..-. +......-|.+|.+.|++++|+...... .+.++...-..++.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHH
Confidence 334444444444454444444443333 2222 2344555668899999999999988773 34556666678888
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
++.+.+-|....+++..++.+ ..+..|+.++.. .+++.+|.-+|+..-.
T Consensus 149 k~~r~d~A~~~lk~mq~ided---~tLtQLA~awv~la~ggek~qdAfyifeE~s~------------------------ 201 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDED---ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE------------------------ 201 (299)
T ss_pred HHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc------------------------
Confidence 999999999999999988744 455556666643 3467888888877622
Q ss_pred cccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCh
Q 015907 314 PQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAER-MFIQARFFAPEKV 388 (398)
Q Consensus 314 ~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~ 388 (398)
+..|.....+ .+.++..+|+|++|...++.++..++++++.+.++..+-...|...++.+ .+.+.....|+++
T Consensus 202 --k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 202 --KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred --ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 2334433333 99999999999999999999999999999999999999999998877654 4566666777764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=66.00 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEK---P----SDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++..+|.+|..+|++++|+.+|++++++. + ....++.++|.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444444444444321 0 1123344444444444444444444444443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=65.68 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CC-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI---SP-K---DSTALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
|....++.++|.++...|++++|+.+|++++++ .+ + ...++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556778999999999999999999999999975 22 2 2558999999999999999999999999876
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=67.83 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD----------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD- 241 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 241 (398)
-|+.|.+.++.....+|.+++.++..|.++..+.+ +++|+.-|+.++.++|+..+++..+|.+|..++.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 36788999999999999999999999988876643 5678888889999999999999999999987653
Q ss_pred ----------HHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 242 ----------YEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 242 ----------~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
|++|..+|+++...+|+ +...+..|..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~ 122 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEM 122 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 78899999999999998 6655554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-05 Score=72.32 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=147.1
Q ss_pred CCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH
Q 015907 114 APIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS 192 (398)
Q Consensus 114 ~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 192 (398)
+|++.++...-+++-+| +++|..+|.+.-..+ .+-..|...|.+++|.+.-+.--.++ --
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----------------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr 858 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-----------------LLNKLYQSQGMWSEAFEIAETKDRIH--LR 858 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------HHHHHHHhcccHHHHHHHHhhcccee--hh
Confidence 34344443322344488 999999998875433 34566777888888877665432221 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDL----------AKEKP----------SDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
..|++.|.-+...++.+.|+++|+++ +..+| .++..|...|..+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 47888888889999999999999875 33344 23456777788888899999999998877
Q ss_pred Hhh---------------------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC---CCCchhhhcccccc
Q 015907 253 TMV---------------------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG---KSDDLSVKDGRSGD 308 (398)
Q Consensus 253 l~~---------------------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~ 308 (398)
-.. ... +..+.+.+|+.|...|+..+|+..|.++...-... .+.++...+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esg-d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L----- 1012 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESG-DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL----- 1012 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcc-cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-----
Confidence 432 122 55678999999999999999999998875422110 000110000
Q ss_pred ccccccccCCCchHHHHHHH--------------HHHhCCChHHHHHHHHH-----HH-----HhCCC-ChHHHHHHHHH
Q 015907 309 KKETEPQKVDPIQVELLLGK--------------AYSDGGRVSDAVAVYDR-----LI-----SSYPN-DFRGYLAKGII 363 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la~--------------~~~~~g~~~~A~~~~~~-----al-----~~~p~-~~~~~~~la~~ 363 (398)
..-++...+.+ ....+. +|.+.|.+.+|++.-=+ ++ .++|+ ++..+...+..
T Consensus 1013 --~nlal~s~~~d-~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1013 --ANLALMSGGSD-LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF 1089 (1416)
T ss_pred --HHHHhhcCchh-HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 00011111111 111233 34444444444443111 11 23443 57888889999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 015907 364 LKENGKVGDAERMFIQA 380 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~a 380 (398)
+....+|++|..++-.+
T Consensus 1090 F~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 99999999999876444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.9e-06 Score=60.47 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---CHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---NFEVLRGLTNA 270 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~la~~ 270 (398)
.+...|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++..+. -..++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 455668888999999999999999999999999999999999999999999999999999986541 23478899999
Q ss_pred HHHcCCchHHHHHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~ 290 (398)
|...|+.+.|..-|+.+.++
T Consensus 125 yRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHhCchHHHHHhHHHHHHh
Confidence 99999999999999888653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-05 Score=76.28 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=112.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
..+....+.|..++|...|.++-.. -.+-..|...|.|++|.+..+.--.+. --..|++.+.-+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 3456667888889999888887543 245567788888888887765432222 134778888888889999
Q ss_pred HHHHHHHHHH----------HhhCCC---------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 243 EGSAAAYRVS----------TMVSKD---------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 243 ~~A~~~~~~a----------l~~~p~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
+.|+++|+++ +.-+|. .+...|...|..+...|+.+.|+.+|..+..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------- 940 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------- 940 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------
Confidence 9999999875 222232 1344566667777777777777777766533
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 304 GRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
|+.+..+..-+|+.++|-.+-+ ...+-.+.+.+|+.|...|++.+|+.+|.+|-.
T Consensus 941 -------------------~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 -------------------YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------------------hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2234444444555555544333 234556777778888777888777777766543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-05 Score=72.32 Aligned_cols=194 Identities=17% Similarity=0.096 Sum_probs=138.4
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
....+++.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.||..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34678999999999999999999999999999999999999999988888777788888899999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG 327 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 327 (398)
+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..+ ..|...|.-+.
T Consensus 99 ~Ye~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~p------------------------k~~yyfWsV~S 152 (932)
T KOG2053|consen 99 LYERANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFP------------------------KRAYYFWSVIS 152 (932)
T ss_pred HHHHHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------------------cccchHHHHHH
Confidence 99999999997 77777888888888777654443322222222 22222333244
Q ss_pred HHHHhCCChH---------HHHHHHHHHHHhC-CCC-hHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCC
Q 015907 328 KAYSDGGRVS---------DAVAVYDRLISSY-PND-FRGYLAKGIILKENGKVGDAERMF-IQARFFAPEK 387 (398)
Q Consensus 328 ~~~~~~g~~~---------~A~~~~~~al~~~-p~~-~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~ 387 (398)
.+.......+ -|...+++.++.. +-. ..-....-.++..+|++++|.+.+ ....+..+.-
T Consensus 153 lilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~ 224 (932)
T KOG2053|consen 153 LILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA 224 (932)
T ss_pred HHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc
Confidence 4444333332 3445556666544 211 111223445677889999999998 3333444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=68.69 Aligned_cols=162 Identities=11% Similarity=0.053 Sum_probs=131.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHc
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSD---PDVFRLLGEVKYEL 239 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~ 239 (398)
.+.+....|++.+|....++.++..|.+..++..--.++..+|+...-...+++.+.. +|+. ..+.-.++..+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455667899999999999999999999999999899999999999999999999876 5555 45566778889999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|-|++|.+.-+++++++|. +..+...++.++...+++.++.+...+-....... ..-.
T Consensus 189 g~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s---------------------~mla 246 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS---------------------WMLA 246 (491)
T ss_pred ccchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---------------------hHHH
Confidence 9999999999999999999 99999999999999999999999986542211100 0000
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
..-+...+.++...+.|+.|+++|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1122237888889999999999998755
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.6e-05 Score=66.11 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSI----SPKDSTALEGAAVTLAE---LGDYTRAVSLLQDL-AKEKPSDPDVF 229 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~ 229 (398)
+....++-.+|....+|+.-+...+..-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 345667778899999999999999887666 45667788999999999 99999999999994 44566788999
Q ss_pred HHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 230 RLLGEVKYEL---------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 230 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
..+|.+|... ...++|+..|.++.+++|+ ...-.+++.++...|...+....+++....+...
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l------ 292 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSL------ 292 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHH------
Confidence 9999988652 2478999999999999976 4444667777777776554443333332111000
Q ss_pred hhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++ .+.....-.+.|.. ++.+..-.|++++|..++++++.+.|....
T Consensus 293 --lg-------~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 293 --LG-------RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred --HH-------hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 00 00011111234433 788888899999999999999988776543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-06 Score=65.27 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH---HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE---AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
++.|.+.++.....+|. +.+.+++-|.++..+.++.. +..+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~m----------------------------------- 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKM----------------------------------- 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHH-----------------------------------
Confidence 67888899999999999 99999999988877654432 3332
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCC
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK-----------VGDAERMFIQARFFAPEK 387 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~ 387 (398)
+++|+.-|++++.++|+..++++.+|.+|..++. |++|..+|++|...+|++
T Consensus 51 -----------------iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 -----------------IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -----------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred -----------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3567777888888888888888888888876654 677888888888889987
Q ss_pred hHHHH
Q 015907 388 VKALV 392 (398)
Q Consensus 388 ~~~~~ 392 (398)
...+.
T Consensus 114 e~Y~k 118 (186)
T PF06552_consen 114 ELYRK 118 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-05 Score=63.42 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---ALEGAAVTLAEL--------GDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p 223 (398)
|-...+.+.++.+++..++++.|+...++-+.+.|.++. +++..|.++... .-..+|+..++..+...|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 444567888999999999999999999999999988754 677777776543 223578888899999999
Q ss_pred CCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 224 SDPD-----------------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 224 ~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
+... --..+|..|.+.|.+..|+.-++.+++..|+. ..+++..+..+|..+|-.++|...-
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 7521 12356889999999999999999999987762 3457888999999999999988774
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-06 Score=67.52 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+...|..++....|..|+.+|.+++.++|..+..|.+.+.||++..+++.+.....+++++.|+....++.+|.+.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 33445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhh
Q 015907 241 DYEGSAAAYRVSTMV 255 (398)
Q Consensus 241 ~~~~A~~~~~~al~~ 255 (398)
.+++|+..+.++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 666666666666443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00027 Score=62.15 Aligned_cols=205 Identities=16% Similarity=0.022 Sum_probs=144.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYEL 239 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 239 (398)
..|.+....|+-..|...-.+.-.+-..+ +.++..-+..-.-.|+++.|..-|+-++. +|+. .-.+..|-.--...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34566667788888888888776544444 34555556777888999999999998875 3322 11222222333468
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|..+.|+.+-+.+....|. -+.++...-...+..|+++.|+++.+.........++ ..+.
T Consensus 168 GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~-------------------~aeR 227 (531)
T COG3898 168 GAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD-------------------VAER 227 (531)
T ss_pred ccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh-------------------hHHH
Confidence 9999999999999999999 8888888888889999999999999876553221110 0001
Q ss_pred chHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 320 IQVELLLGKAYS-DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 320 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
....+.-+.... -.-+...|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..|+-.
T Consensus 228 ~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 228 SRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 112222222221 123577888888888999999888888888999999999999999999988887643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=67.98 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE-LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
+|..+.....+.+..+.|...|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577778888888889999999999997777778999999999666 5677779999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINF---EVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
.++.+.|..+|++++..-|. .. ..|......-...|+.+....+..++.+..+..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999988665 33 478888888899999999999999998887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=52.49 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.7e-05 Score=68.16 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=94.2
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C--
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS---------------------D-- 225 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------------~-- 225 (398)
.+..+.+.-++.-.++++++|+.+.+|..||.-. ..-..+|..+|+++++.... +
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 3566778888999999999999999988887632 23467788888877764310 0
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 226 --PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 226 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..+...+|.|..++|+.++|++.|+..++..|.. +..++.+|..++...+.|.++..++.+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 2356789999999999999999999999988762 5668999999999999999999998775
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-06 Score=51.53 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++..+|.+|..+|++++|+..|+++++.+|+++.+|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4566667777777777777777777777777776666654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=68.47 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+..-|..+..-..|..|+..|.+++.++|..+..|.+.+.|+++.++++.+.....+++++.|+ ....++.+|.++...
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQS 91 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhh
Confidence 3445677778889999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCC
Q 015907 275 KKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~ 295 (398)
..|++|+..+.++.......+
T Consensus 92 ~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred ccccHHHHHHHHHHHHHhcCC
Confidence 999999999999977776553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.2e-05 Score=63.56 Aligned_cols=132 Identities=13% Similarity=0.069 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK------PSDPDVFRLL 232 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 232 (398)
+.+.+..++...++|.-....+.++++.+ |.++.....+|.+.++.||.+.|..+++++-+.. .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566778888899999999999999988 6678889999999999999999999999765432 2334567788
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+.++.-.+++.+|...|.+++..+|. ++.+.++.+.++...|+...|++.++.+....|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88999999999999999999999999 999999999999999999999999988865443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00018 Score=58.81 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI----SP--KDSTALEGAAVTLAE 204 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p--~~~~~~~~la~~~~~ 204 (398)
+++|..+|.++- ..|....+|..|-..|.++-+. +. +....+...+.+|..
T Consensus 30 ~eeAadl~~~Aa-----------------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk 86 (288)
T KOG1586|consen 30 YEEAAELYERAA-----------------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK 86 (288)
T ss_pred hHHHHHHHHHHH-----------------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Confidence 778877777763 3334444455555555444332 11 124456666666655
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHH
Q 015907 205 LGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYEL-KDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALL 272 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~ 272 (398)
+++++|+.++++++++..+.. ..+..+|.+|..- .++++|+.+|+++-+..... ....+...+....
T Consensus 87 -~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred -cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 599999999999999865543 2355788888764 89999999999998765431 1224556677778
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..++|.+|+..|++.....-.++- +.....+..+.-|.|+....+.-.+...+++..+++|.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~L------------------LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNL------------------LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH------------------HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 899999999999887553221110 11111234444788888889998899999999999998
Q ss_pred ChH
Q 015907 353 DFR 355 (398)
Q Consensus 353 ~~~ 355 (398)
...
T Consensus 228 F~d 230 (288)
T KOG1586|consen 228 FTD 230 (288)
T ss_pred ccc
Confidence 644
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00041 Score=57.17 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEK-----PSDPDV 228 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 228 (398)
.+..-+.++....++++|..++.++.+-..++ ..++...+.+...+..+.++..+++++..+. |+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 44555677778889999999999998654443 3466777888888999999999999998763 444444
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
-...+--..+..++++|+.+|++++.+-... -.+.+...++++.+..++.+|-..+.+-......
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---------- 182 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---------- 182 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------
Confidence 4444555566788999999999998874331 2345677888999999999988887553221110
Q ss_pred cccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 304 GRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS----YPNDFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
....+...... ...+|....+|..|..+|+...++ .|++.....+|-..| ..|+.++....+
T Consensus 183 -----------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 183 -----------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred -----------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 12222222223 444555667999999999987663 345566666666655 567777776655
Q ss_pred HH
Q 015907 378 IQ 379 (398)
Q Consensus 378 ~~ 379 (398)
.-
T Consensus 251 ~s 252 (308)
T KOG1585|consen 251 SS 252 (308)
T ss_pred cC
Confidence 43
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=66.16 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=122.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------------------
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD------------------ 258 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------ 258 (398)
.+..-..+..+++.-++..++|++++|+.+.+|..|+.-. ..-..+|.++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3344445678899999999999999999999998887532 22356777777777654210
Q ss_pred ------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh
Q 015907 259 ------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD 332 (398)
Q Consensus 259 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 332 (398)
....+...++.+..+.|+.++|++.++..++..+. .+.-.+..++..++..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-----------------------~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-----------------------LDNLNIRENLIEALLE 307 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-----------------------cchhhHHHHHHHHHHh
Confidence 01235577999999999999999999888653321 1122467779999999
Q ss_pred CCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhhCCCChHHHHH
Q 015907 333 GGRVSDAVAVYDRLISS-YPNDFRGYLAKGIILKE-NGK---------------VGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 333 ~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+.|.++...+.+.-++ -|+.....+..+.+-.+ .++ -..|++.+.+|++.+|.-+.-+..
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 99999999999886433 35566666665554432 122 234778999999999998876543
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00018 Score=61.93 Aligned_cols=167 Identities=11% Similarity=0.058 Sum_probs=132.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC--CHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SKDI--NFEVLRGLTNAL 271 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~la~~~ 271 (398)
...-+.+....|++.+|...++++++..|.+.-++..--.+++..|+...-...+++++.. +|+. ...+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3444566677899999999999999999999988888889999999999999999999977 6662 133455677888
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHh
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
...|-|++|.+.-+++ +++++.+.|.. ++.++...|++.++.++..+.-..
T Consensus 186 ~E~g~y~dAEk~A~ra---------------------------lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRA---------------------------LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred HHhccchhHHHHHHhh---------------------------ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 9999999999998888 56888888876 888889999999999998775432
Q ss_pred CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCh
Q 015907 350 YPND----FRGYLAKGIILKENGKVGDAERMFIQAR--FFAPEKV 388 (398)
Q Consensus 350 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~ 388 (398)
-... ..-|..-+.++.+-+.|+.|.+.|.+-+ ++..++.
T Consensus 239 Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 239 WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 2211 2245677888999999999999997754 3344444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=48.41 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00074 Score=55.72 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINF 261 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~ 261 (398)
..+..-+.+|...++|++|...+.++.+-..++. .++-..+.+...+..+.++..+|+++..+. |+ ..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-tA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-TA 110 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-hH
Confidence 4566667889999999999999999997655442 345566777788899999999999998763 43 22
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC-chHHHHHHHHHHhCCChHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQVELLLGKAYSDGGRVSDAV 340 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 340 (398)
..-...+.=.....++++|+++|+++..++..... ... .+.+-..+.++.+..++.+|-
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr--------------------~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDR--------------------DQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch--------------------HHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 23334444456778899999999999887654411 000 122233888999999999998
Q ss_pred HHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChHHHHHh
Q 015907 341 AVYDRLIS------SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF----APEKVKALVDQ 394 (398)
Q Consensus 341 ~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 394 (398)
..+.+-.. ..++-...+.....+|.-..+|..|...++...++ .|++..+.-+|
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 88776543 23444455666667777778999999999886553 34444444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.8e-06 Score=47.78 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 181 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666666665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00048 Score=58.68 Aligned_cols=132 Identities=19% Similarity=0.179 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG- 233 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la- 233 (398)
|.....-+..+......|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-...... ......+
T Consensus 131 ~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~ 209 (304)
T COG3118 131 PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQ 209 (304)
T ss_pred ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHH
Confidence 44445556677888899999999999999999999999999999999999999999998887643222221 1111111
Q ss_pred -HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 234 -EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 234 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
..+.......+ ...+++.+..+|+ +.++.+.++..+...|+.++|++.+-..++
T Consensus 210 i~ll~qaa~~~~-~~~l~~~~aadPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 210 IELLEQAAATPE-IQDLQRRLAADPD-DVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHhcCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22323222222 2345566778999 999999999999999999999999855544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00023 Score=62.53 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|...|+.+++..|. +...|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 566666777777778888888888876555566777777777555 45555588888888888877 7777877777777
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..++.+.|..+|++++..++.. .....+|......-...|+.+....+.+++.+..|.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~----------------------~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKE----------------------KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCH----------------------HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHHhcCch----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 8888888888887773321100 001123333455555556666666666666666665
Q ss_pred C
Q 015907 353 D 353 (398)
Q Consensus 353 ~ 353 (398)
+
T Consensus 140 ~ 140 (280)
T PF05843_consen 140 D 140 (280)
T ss_dssp S
T ss_pred h
Confidence 3
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.8e-06 Score=46.01 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-05 Score=61.35 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLS--------ISPKDS----------TALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
.++...|.-++..|+|.+|...|..++. ..|..+ ..+.+++.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4667789999999999999999998864 245543 3678899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..|.+..+++..|.++...=+.++|...|.++++++|.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999997
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=45.14 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+.+|+.+|.++..+|++++|++.|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00064 Score=61.56 Aligned_cols=118 Identities=11% Similarity=0.060 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEET-LSISPK--------DSTALEGAAVTLAELGDYTRAVSLLQDLAKE---- 221 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 221 (398)
.+.+.+.+..+..++..|++..|.+.+... +...|. .-.+|.++|.+++++|.|.-+..+|.++++.
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999888653 222333 1235789999999999999999999999961
Q ss_pred -----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 222 -----KP---------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 222 -----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.| ...++.++.|..|...|++-.|.++|.++...... +|..|..++.+...
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-NPRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 11 23568899999999999999999999999998887 89999999988753
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=72.24 Aligned_cols=108 Identities=9% Similarity=0.168 Sum_probs=99.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
..+...+..++++.|+..|.++++++|+.+..+-+.+..+...+++..|+.-+.++++++|....+|+..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 45666778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+|...|+....+.|+ ++.+...+-.+-
T Consensus 89 ~~A~~~l~~~~~l~Pn-d~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPN-DPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcC-cHHHHHHHHHHH
Confidence 9999999999999999 888776665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.001 Score=59.71 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE----KPSDPDVFRLLGEVKYE---LKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+++...+-..|....+|+.-+.+.+.+-.+ .++.+.+...+|.++.+ .|+.++|+..+..++......+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 556777888899999999999999888776 45567788899999999 99999999999996555443389999
Q ss_pred HHHHHHHHH---------cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHHHHHHhCC
Q 015907 265 RGLTNALLA---------AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGG 334 (398)
Q Consensus 265 ~~la~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g 334 (398)
..+|.+|-. ....++|+.+|.++.+ .+|+ ..-.+++.++...|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---------------------------~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---------------------------IEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---------------------------CCccccchHHHHHHHHHcC
Confidence 999999943 2246789999988844 3332 23345666666666
Q ss_pred ChHHHHHHHHHHH--------H----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 335 RVSDAVAVYDRLI--------S----SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 335 ~~~~A~~~~~~al--------~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
...+.....++.. + ..-.+...+-.++.+..-.|++++|+.++++++.+.|...
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5433332222221 1 1223455666788888999999999999999999987643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0024 Score=54.60 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+.-...+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....+...........++
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455666778889999999999999999999999999999999999999999998887643322220111111112333
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
.+.....+....-.+ ...+|.+ ..+.+|..+...|+.++|++.+-..+..
T Consensus 214 ~qaa~~~~~~~l~~~----------------------------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 214 EQAAATPEIQDLQRR----------------------------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHhcCCCHHHHHHH----------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333333333222 2345554 4455999999999999999998888876
Q ss_pred CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 350 YPN--DFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 350 ~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+-. +..+...+-.++...|.-+.+...+++
T Consensus 266 d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 266 DRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 543 455666666666666654444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00058 Score=53.64 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=74.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV-SLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
.|......++.+.++..+++++.+...+...-.. ...|-... ..++.. ...+...++..+...|++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCH
Confidence 3445556677777777787777765332110000 01111111 112221 134666778888889999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
++|+..+++++..+|. +..++..+..+|...|+..+|+..|+++...+..
T Consensus 79 ~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 79 EEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 8889999999999999999999999888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=66.72 Aligned_cols=122 Identities=15% Similarity=-0.003 Sum_probs=101.9
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD----PDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 246 (398)
..+.+.|...+.......|+....++..|+++...|+.++|++.|++++.....- .-.++.++.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999988533222 236788999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc-------hHHHHHHHHHHHHhc
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKP-------DEAVQFLLASRERLS 292 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~ 292 (398)
.+|.+..+.+.-......+..|.++...++. ++|..+|.++.....
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999976542344557788999999999 888888877765443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.7e-05 Score=42.92 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=43.59 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
|+.+|.+|..+|++++|+..|+++++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 33333333333333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00035 Score=63.19 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC--
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAAVTLAELGDYTRAVSLLQDLAKE------KP-- 223 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-- 223 (398)
....+++.|.+++...++..|++.....+..-... ..+-...-..+....+-++|+.++.-.-++ .+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 34567888999998888988888776655432111 112233334555566667777665433221 00
Q ss_pred CC-------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 224 SD-------------------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 224 ~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
++ ..+.......+..+.+..-+..-.+.+..+..+ .+.+....+..++..|++.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchH
Confidence 00 012222334455666677777777777777766 7888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHH-h----
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLIS-S---- 349 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~-~---- 349 (398)
.|.+.+...-- ...+. ..+.|. ..|.++|.++.+.|.|.-+..+|.+++. .
T Consensus 258 kA~KlL~~sni--~~~~g------------------~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 258 KAMKLLLVSNI--HKEAG------------------GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred HHHHHHHhccc--ccccC------------------ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 99998744210 00000 111221 2445699999999999999999999995 1
Q ss_pred ----CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 350 ----YP---------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 350 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
.| ...++.++.|..|...|+.-.|.+.|.++....-.+|..|..+..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 11 235789999999999999999999999999999999999998753
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00086 Score=52.67 Aligned_cols=62 Identities=31% Similarity=0.336 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
.++..++..+...|++++|+..+++++..+|.+..+|..+..+|...|+...|+..|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.013 Score=51.94 Aligned_cols=185 Identities=17% Similarity=0.138 Sum_probs=135.6
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cc
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL----GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LK 240 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 240 (398)
...+++..|...+..+-.. .++.....++.+|..- .+..+|..+|+.+. ....+.+.+.||.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3456777777777776652 2346777778777654 46888999999554 44567888899999987 45
Q ss_pred CHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHHcC-------CchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 241 DYEGSAAAYRVSTMVSKDIN-FEVLRGLTNALLAAK-------KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
+..+|..+|+++....-. . ..+.+.++..|..-. +...|+.+|.++..
T Consensus 128 d~~~A~~~~~~Aa~~g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~----------------------- 183 (292)
T COG0790 128 DLVKALKYYEKAAKLGNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE----------------------- 183 (292)
T ss_pred CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH-----------------------
Confidence 899999999999987633 2 233788888886642 22368888877744
Q ss_pred ccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------CHHHH
Q 015907 313 EPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG---------------KVGDA 373 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A 373 (398)
....+....+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...| +...|
T Consensus 184 ----~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a 256 (292)
T COG0790 184 ----LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQA 256 (292)
T ss_pred ----hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHH
Confidence 3345677778988855 3488999999999998666 88888899 777666 77888
Q ss_pred HHHHHHHHhhCCCCh
Q 015907 374 ERMFIQARFFAPEKV 388 (398)
Q Consensus 374 ~~~~~~al~~~p~~~ 388 (398)
..++..+....+...
T Consensus 257 ~~~~~~~~~~~~~~~ 271 (292)
T COG0790 257 LEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHHHcCChhH
Confidence 888888877665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0046 Score=57.00 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=134.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc-
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGD--------------YTRAVSLLQDLAKEKP-SDPDVFRLLGEVKYELK- 240 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g- 240 (398)
-.-.|++++..-+..+++|+..+..+...++ -+++..+|++++...- .+...++.++..-...-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3456788888888889999888877777766 6788888888877432 23334444443333322
Q ss_pred --CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 241 --DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 241 --~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
.++..-..+++++.+......-+|..+-..-.+..-...|...|.++.+ ....
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~-------------------------~~r~ 398 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE-------------------------DKRT 398 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh-------------------------ccCC
Confidence 3667777888887764431223566677777777778889999988866 2334
Q ss_pred CchHHHHHHH-HHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Q 015907 319 PIQVELLLGK-AYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF--APE 386 (398)
Q Consensus 319 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 386 (398)
+.+++..-|. -|...++.+-|..+|+-.+...++.+..-......+...++-..|..+|++++.. .|+
T Consensus 399 ~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 399 RHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 4455554332 3567899999999999999999999999999999999999999999999999986 444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0039 Score=61.56 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=107.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.|.+....+-|++|...|.+- .-+..+.. .+.-..+..+.|.++.++. +.+.+|..+|.+....|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 456666777778887777653 11222221 1223345566666665554 34667777777777777777
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC-CCchhhhccccccccccccccCCCchH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK-SDDLSVKDGRSGDKKETEPQKVDPIQV 322 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (398)
+|++.|-++ + ++..+.....+..+.|.|++-+.++..+++...+.. +..+..+........-.+..-..|+.+
T Consensus 1122 dAieSyika-----d-Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1122 DAIESYIKA-----D-DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred HHHHHHHhc-----C-CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence 777777654 2 566666777777777777777777766666544331 111111111111100000011234444
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 323 ELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 323 ~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
... .|.-+...|.|+.|.-+|... .-|..|+..+..+|+|+.|...-++|
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 443 677777777777777666542 34566777777777777777666554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=58.20 Aligned_cols=68 Identities=7% Similarity=0.099 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
.+.+++.|+...|+|-++++.....+..+|++..+++..|.++...=+..+|...|.++++++|.-..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 45669999999999999999999999999999999999999999999999999999999999997544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0046 Score=58.43 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-STA------LEGAAVTLA 203 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~------~~~la~~~~ 203 (398)
..-..-.|..++.+- |... ..+-...--.|+-+.++..+.++.+...-. +.+ |+.....+.
T Consensus 173 v~~G~G~f~L~lSlL---------Pp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~ 240 (468)
T PF10300_consen 173 VYFGFGLFNLVLSLL---------PPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFL 240 (468)
T ss_pred HHHHHHHHHHHHHhC---------CHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHc
Confidence 555555677777666 5443 222333334589999999999987732111 111 111111111
Q ss_pred ----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCC
Q 015907 204 ----ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD---INFEVLRGLTNALLAAKK 276 (398)
Q Consensus 204 ----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~la~~~~~~~~ 276 (398)
...+.+.|.+++....+..|+..-.++..|.++...|+.++|++.|++++..... ...-.++.++.++..+.+
T Consensus 241 ~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 241 GIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 2456788999999999999999999999999999999999999999998854322 123467889999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh-------HHHHHHHHHHHHh
Q 015907 277 PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV-------SDAVAVYDRLISS 349 (398)
Q Consensus 277 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 349 (398)
|++|..++.+..+.. .-.+....+..|.++...|+. ++|..++.++-..
T Consensus 321 w~~A~~~f~~L~~~s------------------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 321 WEEAAEYFLRLLKES------------------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHhcc------------------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999998875411 111222333489999999999 8888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.004 Score=55.85 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGD------------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
.-|++.+..+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888876544432 456778899999999999999888888888888999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLA---AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--- 320 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (398)
+-+++++..+|. ++..|..+-..... .-.++.....|.+++..+......... ....+.
T Consensus 86 ~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~--------------~~~~~~~~e 150 (321)
T PF08424_consen 86 KKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT--------------SHPDLPELE 150 (321)
T ss_pred HHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc--------------cccchhhHH
Confidence 999999999999 88888766555543 335778888898888766544221100 000011
Q ss_pred ----hHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 321 ----QVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 321 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
.+...+.....+.|..+.|+..++-.++++
T Consensus 151 ~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 151 EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 223337777888999999999999999865
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00034 Score=60.26 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.+..+-.-|.-|+...+|..|+.+|.+.|+..-.+ ...|.+.|.+....|+|..|+.-..+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45567778999999999999999999999876544 34788999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+.|+..+..+.+|....+..+.++-+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999888776543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0094 Score=47.78 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=94.8
Q ss_pred HHHHHHhc---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 015907 165 ELSEEEKN---VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD---VFRLLGEVKYE 238 (398)
Q Consensus 165 a~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~ 238 (398)
|+-|.+.. ...+|-..|+++++.- ..+.. +.....++...-+|.+.. +-..++..+..
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve 101 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVE 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 44444443 3446666777666532 12222 445555566665655533 34567888889
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDIN--FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
.+++++|+..++.++....+.+ .-+-..|+.+...+|++++|+..+...
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~----------------------------- 152 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI----------------------------- 152 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-----------------------------
Confidence 9999999999998886544422 224578899999999999999887443
Q ss_pred CCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 015907 317 VDPI---QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 317 ~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 353 (398)
.++. ......|.++...|+-++|...|.++++..+..
T Consensus 153 ~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 153 KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1121 122338899999999999999999998876443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.02 Score=52.24 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=138.3
Q ss_pred HhccHHHHHHHHHHHHhcCC---C---C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 015907 170 EKNVLQTRLKKYEETLSISP---K---D--------STALEGAAVTLAELGDYTRAVSLLQDLAKE---KPS-------D 225 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p---~---~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 225 (398)
..|-+++|.++-++++.... . . ...+..+..|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 56778888888887775421 1 1 124566777888899999999998887764 444 3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE--VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
+..+..+|......+.++.|...|..+.+.....+.. ...+++..|.+.++.+.-.+.++. +.+.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~n--------- 434 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLN--------- 434 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCC---------
Confidence 4567788888888999999999999999876543443 346789999998876554444322 22211
Q ss_pred cccccccccccccCCC-------chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCH
Q 015907 304 GRSGDKKETEPQKVDP-------IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKV 370 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 370 (398)
..+ ..+.+..|...+.++++.||...+.+.++.... ..-.+..|+.+....|+.
T Consensus 435 -------------t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~ 501 (629)
T KOG2300|consen 435 -------------TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT 501 (629)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 111 124444777888999999999999999986521 133567889999999999
Q ss_pred HHHHHHHHHHHhhCCCChH
Q 015907 371 GDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 371 ~~A~~~~~~al~~~p~~~~ 389 (398)
.++.+...-++.+....++
T Consensus 502 ~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 502 VESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHhccchHHHHHhcCCC
Confidence 9999998888876544433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.034 Score=48.82 Aligned_cols=223 Identities=18% Similarity=0.084 Sum_probs=135.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCC----hHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhc----CCC---C----
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPT----EEAGVVNKELSEEEKN-VLQTRLKKYEETLSI----SPK---D---- 191 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~----~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~----~p~---~---- 191 (398)
.| .+.|..++.++-.... ...|. -...+++.|......+ +++.|..+++++.+. .+. .
T Consensus 6 ~~~~~~A~~~~~K~~~~~~-----~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLN-----SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred hCCHHHHHHHHHHhhhHHh-----cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 56 7788888887754431 11133 2357788999999999 999999999999887 211 1
Q ss_pred ---HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCCHHH
Q 015907 192 ---STALEGAAVTLAELGDYT---RAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK--DINFEV 263 (398)
Q Consensus 192 ---~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 263 (398)
..++..++.+|...+.++ +|...++.+-...|+.+..+...-.++...++.+++.+.+.+++..-+ +.+.+.
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 236788999999888765 455555566666788787776656666668999999999999988654 212222
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH---HHHHHHhCC--C---
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL---LGKAYSDGG--R--- 335 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---la~~~~~~g--~--- 335 (398)
......-+. ......|...+...+... ....++. +.. +-.++...+ +
T Consensus 161 ~l~~i~~l~-~~~~~~a~~~ld~~l~~r-----------------------~~~~~~~-~~e~~vl~~~~~~~~~~~~~~ 215 (278)
T PF08631_consen 161 ILHHIKQLA-EKSPELAAFCLDYLLLNR-----------------------FKSSEDQ-WLEKLVLTRVLLTTQSKDLSS 215 (278)
T ss_pred HHHHHHHHH-hhCcHHHHHHHHHHHHHH-----------------------hCCChhH-HHHHHHHHHHHHHcCCccccc
Confidence 222222222 234456777765554411 1112221 222 222222222 2
Q ss_pred ---hHHHHHHHHHHHHh--CCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 336 ---VSDAVAVYDRLISS--YPNDF-------RGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 336 ---~~~A~~~~~~al~~--~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
.+....++...... .|-.. ..+.+.|.-.++.++|++|+.+|+-++
T Consensus 216 ~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 216 SEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222333322211 22222 356678889999999999999999776
|
It is also involved in sporulation []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.018 Score=55.86 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhc-----CCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK-----NVLQTRLKKYEETLSI-----SPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~ 200 (398)
...+..+++.+... .+..+...+|.++..- .+.+.|+.+|+.+... .-..+.+.+.+|.
T Consensus 228 ~~~a~~~~~~~a~~-----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhh-----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 35677788777644 3556677788877654 6899999999998771 1125568889999
Q ss_pred HHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 201 TLAELG-----DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK---DYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 201 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+|.... ++..|+.+|.++.+.. ++.+.+.+|.++.... ++..|.++|..|.... +..+.+.++.+|.
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYE 371 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence 998853 7788999999998875 4668888999888755 5789999999998765 7889999999886
Q ss_pred H----cCCchHHHHHHHHHHHHh
Q 015907 273 A----AKKPDEAVQFLLASRERL 291 (398)
Q Consensus 273 ~----~~~~~~A~~~~~~a~~~~ 291 (398)
. ..+...|..++.++....
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc
Confidence 4 357789999998886543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=41.26 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788888888888888888888888888875
|
... |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.1e-05 Score=66.96 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
++.|+.+|.+++.++ |+++..+-+.+..+...+++..|+..+.++++.+|....+|+..|.+.+..+.+.+
T Consensus 20 fd~avdlysKaI~ld---------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELD---------PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HHHHHHHHHHHHhcC---------CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 788999999999999 99998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
|...|++...+.|+++.+...+..|-..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 9999999999999999988877766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.058 Score=50.77 Aligned_cols=195 Identities=11% Similarity=-0.051 Sum_probs=151.1
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPDVF 229 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~ 229 (398)
....+.....|......-...|+++...-.|++++--.....+.|...+.-....|+.+-|-..+..+.++ .|+.+.+.
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 33335556677777788888999999999999999887788899999999999999999999999888886 46677788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccc
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
..-+......|+++.|...+++.....|. ...+-...+.+..+.|+.+.+.. +.......-..
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~--------------- 432 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINWERRKGNLEDANY-KNELYSSIYEG--------------- 432 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccc---------------
Confidence 88888888899999999999999998888 78887888888888999888884 22222211111
Q ss_pred cccccccCCCc---hHHHHHHH-HHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 310 KETEPQKVDPI---QVELLLGK-AYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 310 ~~~~~~~~~~~---~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
..++. ......+. .+.-.++.+.|...+.++++..|.+...+..+..+....+
T Consensus 433 ------~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 ------KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ------ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 11121 12222333 3455688999999999999999999988888888877665
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.012 Score=57.06 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=130.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc--
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL-----GDYTRAVSLLQDLAKE-----KPSDPDVFRLLGEVKYELK-- 240 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 240 (398)
+...|..+++.+-.. .+..+...+|.+|..- .|.+.|+.+++.+.+. .-..+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456788888887665 4677888888888754 6899999999999771 1124567888999998843
Q ss_pred ---CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 241 ---DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK---KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 241 ---~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+...|..+|.++-... ++++.+.+|.++.... ++..|..+|..+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------------------------- 356 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK------------------------- 356 (552)
T ss_pred ccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-------------------------
Confidence 6788999999998876 5678889999997655 56899999988843
Q ss_pred ccCCCchHHHHHHHHHHhC----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 015907 315 QKVDPIQVELLLGKAYSDG----GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-GKVGDAERMFIQARF 382 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 382 (398)
.....+.++++.+|..- -+...|..+|.++.+.. .+.+.+.++.++.-- +.+..+...+....+
T Consensus 357 --~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 357 --AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred --cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 44457778888888653 47899999999999876 455555566555433 666666555544433
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0092 Score=50.02 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL-GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE-GSAAAY 249 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~ 249 (398)
..-.+|+.....++.++|.+-.+|...-.++..+ .+..+-++++...++.+|++-.+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 4456778888999999999999988877777655 46778889999999999999999999988888899888 788899
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+.++..+.. +..+|...-.+...-+.++.-+.+..+.++
T Consensus 137 ~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 137 KLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999998888 899999999999998999998888877665
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=8.4e-05 Score=64.20 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=87.8
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.+.-.+..|.++.|++.|-.++.++|.....+...+.++..++.+..|+.-+..+++++|+...-+-..+.....+|+++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 34455677899999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 015907 244 GSAAAYRVSTMVSKD 258 (398)
Q Consensus 244 ~A~~~~~~al~~~p~ 258 (398)
+|...+..+.+++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999998754
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.043 Score=46.18 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEK-NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT-RAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l 232 (398)
|.+..+|...-.++... .+..+-++++.++++.+|.+-.+|...-.+....|++. .-+++.+.++..+.++-.+|...
T Consensus 74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 65555555555444443 34556667777777777777777777777777777776 66777777777777777777777
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
-.+...-+.++.-+.+..+.++.+-- +-.+|..
T Consensus 154 qW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~ 186 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQ 186 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhhe
Confidence 77777777777777777777766554 4445443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.065 Score=48.89 Aligned_cols=114 Identities=16% Similarity=0.047 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA 339 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 339 (398)
....|..++.+....|.++.|...+.++....... ......+.+..+..+...|+..+|
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---------------------~~~~~~v~~e~akllw~~g~~~~A 203 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---------------------ESLLPRVFLEYAKLLWAQGEQEEA 203 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---------------------cCCCcchHHHHHHHHHHcCCHHHH
Confidence 56788889999999999999999987764422111 111345666688888999999999
Q ss_pred HHHHHHHHHhC-C-C--------------------------------ChHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 015907 340 VAVYDRLISSY-P-N--------------------------------DFRGYLAKGIILKEN------GKVGDAERMFIQ 379 (398)
Q Consensus 340 ~~~~~~al~~~-p-~--------------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~ 379 (398)
+..++..+... . . ...++..+|...... +..++++..|.+
T Consensus 204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 99888877610 0 0 024666777777777 888899999999
Q ss_pred HHhhCCCChHHHHHh
Q 015907 380 ARFFAPEKVKALVDQ 394 (398)
Q Consensus 380 al~~~p~~~~~~~~l 394 (398)
+..++|+...+|...
T Consensus 284 a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhChhHHHHHHHH
Confidence 999999988887753
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.018 Score=46.20 Aligned_cols=113 Identities=16% Similarity=0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHH
Q 015907 176 TRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
+.....++....+|.+. .+...+|..+...|++++|+..++.++....+. .-+-.+|+.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555555442 345667788888888888888888887543322 235567888888888888888887
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
...-..+ .........|.++...|+-++|...|.+++..
T Consensus 150 ~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 150 DTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 6543221 12334556788888888888888888888664
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=50.73 Aligned_cols=204 Identities=13% Similarity=0.006 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK--D-------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-- 225 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 225 (398)
++......++......++.+|..+..++...-|. . ....-..|.+....|++++|+++.+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4455666788888899999999988887665433 1 2344556788889999999999999999987754
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---CHH--HHHHHHHHHHHcCC--chHHHHHHHHHHHHhcCCC
Q 015907 226 ---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---NFE--VLRGLTNALLAAKK--PDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 226 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~--~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~ 295 (398)
..++..+|.+..-.|++++|..+...+.+..... ... +....+.++..+|+ +.+....+.......
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~---- 569 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH---- 569 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----
Confidence 3467788999999999999999999988874321 222 33455777788883 333333333322211
Q ss_pred CCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCC--hH-HHHHHHHHHHH
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISS----YPND--FR-GYLAKGIILKE 366 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~ 366 (398)
....|.. .....+.++...-+++.+.......++. .|.. .. .++.++.++..
T Consensus 570 -------------------l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 570 -------------------LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred -------------------hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 0111111 1111222222222255555444444432 2222 22 23478888888
Q ss_pred cCCHHHHHHHHHHHHhh
Q 015907 367 NGKVGDAERMFIQARFF 383 (398)
Q Consensus 367 ~g~~~~A~~~~~~al~~ 383 (398)
.|+.++|...+.....+
T Consensus 631 ~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 631 RGDLDKALAQLDELERL 647 (894)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888776654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.017 Score=50.18 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD----PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
-+..-|+-|+..++|..|...|.+.|+..-.+ ...|.+.+-+....|+|..|+....+++.++|. +..+++.=+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhH
Confidence 45556888999999999999999999975443 457889999999999999999999999999999 9999999999
Q ss_pred HHHHcCCchHHHHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~ 289 (398)
+++.+.++.+|..+.+..+.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999877644
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00025 Score=40.52 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
++.+||.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888875544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0006 Score=38.26 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
|+.+|.+|..+|++++|+.+|+++++++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3333444444444444444444443333
|
... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00025 Score=61.36 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=81.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
-.+..|.++.|++.|..+++++|.....+...+.++..++....|+..+..++.++|+ ...-+-..+.+...+|++++|
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 3455688999999999999999999999999999999999999999999999999999 888888899999999999999
Q ss_pred HHHHHHHHH
Q 015907 281 VQFLLASRE 289 (398)
Q Consensus 281 ~~~~~~a~~ 289 (398)
...+..+.+
T Consensus 202 a~dl~~a~k 210 (377)
T KOG1308|consen 202 AHDLALACK 210 (377)
T ss_pred HHHHHHHHh
Confidence 999988866
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.05 Score=54.23 Aligned_cols=204 Identities=12% Similarity=0.077 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
+.+..|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+-+.... +.+-..|..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 45678899999999999999999888765 67778888888888889999888888766553211 1122223333
Q ss_pred HHHcc----------------------------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 236 KYELK----------------------------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 236 ~~~~g----------------------------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
|.+.+ .|+.|.-+|. +..-|..|+..+...|+|..|.+.-+++
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333 3333333332 2334556666777777777777666554
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCC---chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDP---IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
-..-. ....-...-.-.+-.+.+....+- .+-.-.+...|...|-+++-+..++.++-+.......+..||.+|
T Consensus 1247 ns~kt---WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1247 NSTKT---WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred cchhH---HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 11000 000000000000000000001100 111222566677777777777777777766665556666666666
Q ss_pred HHcCCHHHHHHHHH
Q 015907 365 KENGKVGDAERMFI 378 (398)
Q Consensus 365 ~~~g~~~~A~~~~~ 378 (398)
.+- ++++-.++++
T Consensus 1324 sky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLK 1336 (1666)
T ss_pred Hhc-CHHHHHHHHH
Confidence 543 3444444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.017 Score=51.86 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=109.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 213 SLLQDLAKEKPSDPDVFRLLGEVKYELKD------------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 213 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
.-+.+.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|+ +...+..+-.......+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 45778889999999999998866554422 45667899999999998 999998888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC-----ChHHHHHHHHHHHHhCC----
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG-----RVSDAVAVYDRLISSYP---- 351 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p---- 351 (398)
..-+++++. .+|....+|.+.+-..++ .++.....|.+++..-.
T Consensus 85 ~~~we~~l~---------------------------~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 85 AKKWEELLF---------------------------KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHH---------------------------HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 888877744 566667777555554444 46788888888775210
Q ss_pred C--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 352 N--------------DFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 352 ~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
. -..++..+...+.+.|-.+.|+..++-.++++
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0 13466778888899999999999999999875
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00065 Score=37.75 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777788877888888888888887777763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.19 Score=46.85 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=82.6
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCC--------------chHHHHHHHHHHHHhcCCCCCchhhhcccccc-------
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKK--------------PDEAVQFLLASRERLSTGKSDDLSVKDGRSGD------- 308 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 308 (398)
++++..-+- .++.|+..+..+...++ -+++..+|++++...... ...++..+...++
T Consensus 269 eQ~ll~l~~-~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 269 EQCLLYLGY-HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccch
Confidence 333333334 56777776666655555 578888888877644322 1011111111110
Q ss_pred --------ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 015907 309 --------KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII-LKENGKVGDAERMFIQ 379 (398)
Q Consensus 309 --------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 379 (398)
..+......+|+-++..+-..-.+..-...|..+|.++-+..-....++..-|.+ |...++..-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 1122233455666666666666666678888999998876433333444444443 4677999999999999
Q ss_pred HHhhCCCChHH
Q 015907 380 ARFFAPEKVKA 390 (398)
Q Consensus 380 al~~~p~~~~~ 390 (398)
.+...++.+.-
T Consensus 427 GLkkf~d~p~y 437 (656)
T KOG1914|consen 427 GLKKFGDSPEY 437 (656)
T ss_pred HHHhcCCChHH
Confidence 99998887653
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.11 Score=47.77 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=141.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCC-CCCC----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CCC-------CH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGS-VSPT----EEAGVVNKELSEEEKNVLQTRLKKYEETLSI---SPK-------DS 192 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~-------~~ 192 (398)
.| +++|.++-++++...+.++... ..|- ....+-.+..|-.-.|++.+|++....+.+. .|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 35 6666666666665543333321 1111 0122334556667789999999888877664 344 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--C-------
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-D--PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--N------- 260 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~------- 260 (398)
...+.+|......+.++.|...|..+.+.-.. + .-+..++|.+|...|+-+.--+.++. +.|.. .
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHH
Confidence 45677777777788999999999999886433 2 23456789999998776554444443 34430 1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHH
Q 015907 261 FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSD 338 (398)
Q Consensus 261 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~ 338 (398)
..+++..|...+.++++.||...+.+.++..... ..+. .-....++.+....|+..+
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae---------------------d~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE---------------------DLNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh---------------------hHHHHHHHHHHHHHHHHHHhcchHH
Confidence 2356777888889999999999998887643110 0110 1233348999999999999
Q ss_pred HHHHHHHHHHhC---CCChH---HHHHHHHHHHHcCC--HHHHHHHH
Q 015907 339 AVAVYDRLISSY---PNDFR---GYLAKGIILKENGK--VGDAERMF 377 (398)
Q Consensus 339 A~~~~~~al~~~---p~~~~---~~~~la~~~~~~g~--~~~A~~~~ 377 (398)
+....+-++.+. |+.+. ....+-.+|...|+ .++..+.|
T Consensus 504 s~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 504 SRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 999988888764 33332 22345556777777 44444443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=60.27 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 241 (398)
..|......|+...|+.++..++-..|.... ...++|.++...|....|-.++.+++.+....+-.++.+|..+..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 3455666789999999999999998887644 578899999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.+.|++.|++++.++|+ ++..-..|-.+.+
T Consensus 692 i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 99999999999999999 8877665554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.16 Score=46.38 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHH-HhcCCCCCch
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---NFEVLRGLTNALLAAKKPDEAVQFLLASRE-RLSTGKSDDL 299 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~ 299 (398)
.....|..++.+....|+++.|...+.++...++.. .+.+....+.++...|+..+|+..++..+. ..........
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 446678888899999999999999988888765321 356777888888899999999988877766 2222211000
Q ss_pred hhhc--cc---cccc---cccccccCCCchHHHHHHHHHHhC------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 300 SVKD--GR---SGDK---KETEPQKVDPIQVELLLGKAYSDG------GRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 300 ~~~~--~~---~~~~---~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
.... +. .... .........-..++..+|...... +..++++..|.++++.+|....+|+.+|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 00 0000 000000000013444577777777 88999999999999999999999999998886
Q ss_pred HcCCH-----------------HHHHHHHHHHHhhCCCC
Q 015907 366 ENGKV-----------------GDAERMFIQARFFAPEK 387 (398)
Q Consensus 366 ~~g~~-----------------~~A~~~~~~al~~~p~~ 387 (398)
..-+. ..|+..|-+++...|..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 55221 34888899999998873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.012 Score=45.91 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..+......-...++.+++...+....-+.|..++.-..-|.+++..|+|.+|+.+++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555566666778889999999888888999999999999999999999999999999888888888888888899888
Q ss_pred ccCHHHHHHHHHHHHhhCC
Q 015907 239 LKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p 257 (398)
+|+.+ =..+-..+++..+
T Consensus 91 ~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPS-WRRYADEVLESGA 108 (160)
T ss_pred cCChH-HHHHHHHHHhcCC
Confidence 87753 1222333444444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.074 Score=48.41 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=102.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CCH---HHHHHHH
Q 015907 183 ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--------------KP------------SDP---DVFRLLG 233 (398)
Q Consensus 183 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la 233 (398)
..+..+|-+.+++..++.++..+|+...|.+++++++-. ++ .|- .+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345678999999999999999999999999999998632 11 111 2455667
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFE-VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
..+.+.|-+..|.++.+-.+.++|..++- +++.+-....+.++++--+..++.........
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~------------------ 172 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN------------------ 172 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh------------------
Confidence 78888999999999999999999985554 44555555578888887777776543310000
Q ss_pred ccccCCCchHHHHHHHHHHhCCCh---------------HHHHHHHHHHHHhCC
Q 015907 313 EPQKVDPIQVELLLGKAYSDGGRV---------------SDAVAVYDRLISSYP 351 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p 351 (398)
....-| ...+..+.++...++- +.|...+.+|+...|
T Consensus 173 -~~~~lP-n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 173 -WLSLLP-NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred -hhhhCc-cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 011223 3334456666666666 888888888876544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=54.75 Aligned_cols=70 Identities=14% Similarity=0.328 Sum_probs=65.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+.-....|+.++|...|+.++.+.|++++++..+|.+.....+.-+|-.+|-+|+.+.|.+.+++.++-
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 4555677899999999999999999999999999999999999999999999999999999999998864
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.33 Score=48.14 Aligned_cols=224 Identities=15% Similarity=0.018 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCC---CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVS---PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAAVTL 202 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~ 202 (398)
+++|..++.++...- +..... ......--..|.+....|+++.|+...+.++..-|.+ ..++..+|.+.
T Consensus 431 ~~ea~~li~~l~~~l---~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 431 LAEAETLIARLEHFL---KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred hHHHHHHHHHHHHHh---CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 777777777665433 221111 1122333456778888999999999999999987765 34778889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHccCHH--HHHHHHHHHHh----hCCCCCHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPS----DP--DVFRLLGEVKYELKDYE--GSAAAYRVSTM----VSKDINFEVLRGLTNA 270 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~----~~--~~~~~la~~~~~~g~~~--~A~~~~~~al~----~~p~~~~~~~~~la~~ 270 (398)
.-.|++++|..+..++.+.... .. .+....+.++..+|+.. +....|...-. ..|. ........+.+
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~-~~f~~~~r~~l 586 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR-HEFLVRIRAQL 586 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHH
Confidence 9999999999999998886322 22 23445577888888433 33333333222 2233 22233333444
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH---HHHHHHHHhCCChHHHHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE---LLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+...-+++.+.............. ...|...+ ..++.++...|++++|...+.+..
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~---------------------~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVY---------------------TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhc---------------------ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 433333666655554444433222 22333322 358999999999999999998877
Q ss_pred HhCCCC-----hHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 015907 348 SSYPND-----FRG--YLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 348 ~~~p~~-----~~~--~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
.+-... ..+ +.-.......+|+..+|.....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 643222 111 22222333567888888887766
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0015 Score=36.17 Aligned_cols=30 Identities=3% Similarity=0.032 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.069 Score=48.50 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-- 255 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 255 (398)
.-.+++++...|-.+++|+.....+...++-+.|+....+.+...|. ....++.+|....+.+....+|+++++.
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 34567888888888999999999999999999999999888877765 6667888888877877777777766532
Q ss_pred ----------------CCCCCHH-----------HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 256 ----------------SKDINFE-----------VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 256 ----------------~p~~~~~-----------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
+|...++ +|+.+.....+..-.+.|...|-++.+.
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~------------------ 426 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE------------------ 426 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc------------------
Confidence 1110111 2333334444555567777788776542
Q ss_pred ccccccccCCCchHHHHHH-HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 309 KKETEPQKVDPIQVELLLG-KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.....+++..-| .-|...|++.-|..+|+-.+...|+++......-..+...++-..|..+|++++.
T Consensus 427 -------~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 427 -------GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred -------CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 222233333322 2345667777788888777777777766666666666777777777777776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.022 Score=54.70 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP 277 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~ 277 (398)
.|.-+.+.|+++.|+..|-.+- ....-.......+++.+|+..++..-.... ....|-.++.-|...|+|
T Consensus 712 wg~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445555566666666554431 111112222333445555555443322221 123344566667777777
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRG 356 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 356 (398)
+.|.++|.++ +...--...|.+.|+|++|...-.+.. .|.. ...
T Consensus 782 e~ae~lf~e~---------------------------------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~ 826 (1636)
T KOG3616|consen 782 EIAEELFTEA---------------------------------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISL 826 (1636)
T ss_pred HHHHHHHHhc---------------------------------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHH
Confidence 7777777443 111113455666677777766655543 2322 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 015907 357 YLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~ 377 (398)
|...+.-+-+.|++.+|.++|
T Consensus 827 yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhHHhHHhhcchhhhhhee
Confidence 555566666666666665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=36.63 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLA 219 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al 219 (398)
|..||.+|...|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=41.29 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccC
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD--PDVFRLLGEVKYELKD 241 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 241 (398)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 455666677777777777777777777777777777777777766543 3444444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.004 Score=38.76 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 357 YLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
++.+|..+.++|+|++|..+.+.++++.|++.++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444555555555555555555555555554443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0073 Score=37.60 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
.++.+|..++++|+|++|..+.+.+++..|++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45566666666666666666666666666666555433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.29 Score=43.31 Aligned_cols=143 Identities=15% Similarity=0.053 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE-- 204 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-- 204 (398)
+..+...+..+.... ++.....++.++.. ..+..+|..+|..+.. ...+.+.+.+|.+|..
T Consensus 57 ~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 57 YAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGR 123 (292)
T ss_pred HHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCC
Confidence 677777777775422 22566667777655 3468899999995544 5678899999999987
Q ss_pred --cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH-
Q 015907 205 --LGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYELK-------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA- 273 (398)
Q Consensus 205 --~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~- 273 (398)
..++.+|..+|+++.+..-.. ..+.+.++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G 200 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKG 200 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcC
Confidence 459999999999999875433 344778888887642 2347889999888766 67888999988854
Q ss_pred ---cCCchHHHHHHHHHHH
Q 015907 274 ---AKKPDEAVQFLLASRE 289 (398)
Q Consensus 274 ---~~~~~~A~~~~~~a~~ 289 (398)
..++.+|..+|.++..
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 4578999999998854
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=54.82 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=86.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChH-HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE-AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG 206 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 206 (398)
+| ...|+..+..++... |... ....+++.+....|-..+|-.++.+++.+....+...+.+|+.+..+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~---------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLA---------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cCCcHHHHHHHHHHhccC---------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 88 889999999998776 5433 356789999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+.+.|++.++++++.+|+++.+...|-.+-.
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999887666554433
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.44 Score=44.54 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
|..+.-.+..+..+...|+.+.|+..++..++ +.- ...++.+|.++..+.+|..|...+..+.+.....-..|.
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 66666666677777777777777788777766 221 235677888888888888888888888777654444444
Q ss_pred HHH-HHHHH--------ccCHHHHHHHHHHH---HhhCCCCCH-H-HHHHHHHHHHHcCC--chHHHH--HHHHHH--HH
Q 015907 231 LLG-EVKYE--------LKDYEGSAAAYRVS---TMVSKDINF-E-VLRGLTNALLAAKK--PDEAVQ--FLLASR--ER 290 (398)
Q Consensus 231 ~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~-~-~~~~la~~~~~~~~--~~~A~~--~~~~a~--~~ 290 (398)
.++ .|+.. .|+.+.|-.+++.. +...|...| + .....+.-+...+. ....+. +++-+. ..
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 443 33322 23444444433332 222222000 0 11111222222220 000000 000000 00
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchH---HHHHHHHHHhCCChHHHHHHHHHHHHh---CCC----ChHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV---ELLLGKAYSDGGRVSDAVAVYDRLISS---YPN----DFRGYLAK 360 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~l 360 (398)
++.-....+. ....+....... ++++. ++.+|.++..+|+...|..+|...++. ... .|.+++.+
T Consensus 422 f~~~s~~~l~----k~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YEl 496 (546)
T KOG3783|consen 422 FSRMSKNELE----KMRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYEL 496 (546)
T ss_pred cccCChhhHH----HHHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 0000000000 000000001112 34432 334999999999999999999988742 111 26799999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCC
Q 015907 361 GIILKENGK-VGDAERMFIQARFFAPE 386 (398)
Q Consensus 361 a~~~~~~g~-~~~A~~~~~~al~~~p~ 386 (398)
|..|..+|. ..++..++.+|-+...+
T Consensus 497 A~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 497 ALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHhcccChHHHHHHHHHHHhhccc
Confidence 999999999 99999999999887644
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0052 Score=52.60 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
-...+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34455666788999999999999999999999999999999999999999999999999999999888766543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.019 Score=49.65 Aligned_cols=77 Identities=14% Similarity=0.003 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+.++-.+|...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|...++..++..|+ ++.+-.....+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~-dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE-DPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999998 777655444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.043 Score=42.87 Aligned_cols=85 Identities=20% Similarity=0.120 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
..+..+..+-...++.+++..++.-+--+.|..++.-..-|.++...|++.+|+..++.+....|. .+.+--.++.++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHH
Confidence 355666677788899999999999999999999999999999999999999999999999888888 8888888999999
Q ss_pred HcCCch
Q 015907 273 AAKKPD 278 (398)
Q Consensus 273 ~~~~~~ 278 (398)
..++++
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 988865
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.035 Score=51.00 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhh
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD-YEGSAAAYRVSTMV 255 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 255 (398)
-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 35667777777788888888877777777778888888888888888888888877766666554 78888888888888
Q ss_pred CCCCCHHHHHH
Q 015907 256 SKDINFEVLRG 266 (398)
Q Consensus 256 ~p~~~~~~~~~ 266 (398)
+|+ .+..|..
T Consensus 170 npd-sp~Lw~e 179 (568)
T KOG2396|consen 170 NPD-SPKLWKE 179 (568)
T ss_pred CCC-ChHHHHH
Confidence 888 7776644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.089 Score=50.38 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTAL----------EGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
..++..|..++......-.++.|...|-++-... . .... ...|.+-..-|++++|...|-.+-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 4577889999999888888888988887764321 1 1111 223444445588888888775542211
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.-..++...|+|-...+.++..-.-+.+ .-..++.++|..+..+..|++|.++|..+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1124455667776666655532211111 02347788888888888888888888655
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.03 Score=48.42 Aligned_cols=71 Identities=13% Similarity=-0.020 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
...++-.+|...++++.|+.+.+.++.+.|+ ++.-+...|.+|.+.|.+..|..-++..++..+..|...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4556677888888888888888888888888 8888888888888888888888888888888777776433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.21 Score=45.51 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=110.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC-----------CC---HHHHHHHHH
Q 015907 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--------------SKD-----------IN---FEVLRGLTN 269 (398)
Q Consensus 218 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~-----------~~---~~~~~~la~ 269 (398)
.+..+|-+.+++..++.++..+|+...|.+..++|+-. ++. .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 45678999999999999999999999999999888632 111 01 124566777
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
.+.+.|-+..|+++.+-.+.+.+ ..||--+.+.+=....+.++++--+..++.....
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp-----------------------~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDP-----------------------DEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCC-----------------------CCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 88899999999999877644322 1234445555666667888888777777765542
Q ss_pred CC-----CChHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCChHHHHH
Q 015907 350 YP-----NDFRGYLAKGIILKENGKV---------------GDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 350 ~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.. ..+...+..+.++...++. +.|...+.+|+...|.-...+.+
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 1345677888888888888 89999999999988865554443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0036 Score=34.00 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.++..+|.++..+|++++|+..|++++.++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888877775
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.19 Score=47.23 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=113.3
Q ss_pred HhccHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---------
Q 015907 170 EKNVLQTRLKKYEETLSI------------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-----KP--------- 223 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p--------- 223 (398)
....|++|...|.-+... .|.+.+.+..++.+...+|+.+-|..+.++++-. .|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888888777654 4666789999999999999999999888887632 22
Q ss_pred -------CCHH---HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhc
Q 015907 224 -------SDPD---VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL-LAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 224 -------~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.+-. +++..-..+...|=+..|.++.+-++.++|..+|-+...+...| ++..+|.--++.++.....-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2211 22333445566889999999999999999986676665555555 566777766666655433111
Q ss_pred CCCCCchhhhccccccccccccccCCCchHHHH-HHHHHHhCCC---hHHHHHHHHHHHHhCC
Q 015907 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL-LGKAYSDGGR---VSDAVAVYDRLISSYP 351 (398)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~---~~~A~~~~~~al~~~p 351 (398)
+...|+..+.. +|..|..... -+.|...+.+|+...|
T Consensus 410 ----------------------l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 ----------------------LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ----------------------HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 34556665554 8888888776 5788899999988776
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.037 Score=39.06 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFLL 285 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 285 (398)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++. +..+...+..++...|.-+....-|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4567888999999999999999999999999999999999999998873 35677777777777777554444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.12 Score=49.92 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.|-.++.-|...|+|+.|.++|.++- ....-...|.+.|++..|.+.-++.. .|+.....|...+.-+-.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE 836 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh
Confidence 34445666666677777766665531 12223345556666666666555543 233223345555555666
Q ss_pred cCCchHHHHHH
Q 015907 274 AKKPDEAVQFL 284 (398)
Q Consensus 274 ~~~~~~A~~~~ 284 (398)
.|+|.+|.++|
T Consensus 837 hgkf~eaeqly 847 (1636)
T KOG3616|consen 837 HGKFAEAEQLY 847 (1636)
T ss_pred hcchhhhhhee
Confidence 66666666655
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.038 Score=40.07 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR 288 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 288 (398)
.++++|.++..+.|. ....++.+|.-+-....|++++.--++++
T Consensus 62 ~sve~~s~a~~Lsp~-~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 62 GSVECFSRAVELSPD-SAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HhHHHHHHHhccChh-HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 567788888888887 66677777766555555666655555543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0054 Score=50.31 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=56.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
....+.++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778999999999999999999999999999999999999999999999999999864
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.057 Score=41.46 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+..........++.+++...+...--+.|+.++.-..-|.+++..|+|.+|+..++.+.+..+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33344444557888888888888888889888888888889999999999999998888877777777777788877776
Q ss_pred CH
Q 015907 241 DY 242 (398)
Q Consensus 241 ~~ 242 (398)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 54
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.06 Score=49.53 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-YT 209 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~ 209 (398)
...-+.+|+.+...- +.+...|..........+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+
T Consensus 87 ~~rIv~lyr~at~rf---------~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRF---------NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchH
Confidence 455566788887776 78888998888777778889999999999999999999999999877777666 89
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~ 231 (398)
.|..++.+++..+|+.+..|..
T Consensus 158 saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 158 SARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHHhhcCCCChHHHHH
Confidence 9999999999999999877653
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISP 189 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 189 (398)
++..+|.++...|+++.|+.+|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.17 Score=37.07 Aligned_cols=94 Identities=21% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHccCHHHHHHHHHHHHhhCCCC-----------CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDI-----------NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGR 305 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (398)
..-|-|++|...++++....... +.-.+..|+.++..+|+|++++..-..++..+....+
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE--------- 90 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE--------- 90 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-----------
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc---------
Confidence 34566777777777777653220 1235667788888888888887777666554432211
Q ss_pred cccccccccccCCCchHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 306 SGDKKETEPQKVDPIQVE----LLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
+..+....| +..+..+...|+.++|+..|+.+-+
T Consensus 91 ---------L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 91 ---------LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ---------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 112222222 2256666777777777777776654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.047 Score=39.60 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=72.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGD-----------YTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 229 (398)
++..++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999988876 455566776654432 2368899999999999988888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+.+|.-+.....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777667778888877777765
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.26 Score=36.15 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPK------------DSTALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|.-....|.|++|...+.++++.... +..++..|+..+..+|+|++++....+++.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34445567788888888888765321 133566777777778888777776666653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.49 Score=37.44 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=78.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHHcCCc
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSD--PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN---FEVLRGLTNALLAAKKP 277 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~la~~~~~~~~~ 277 (398)
.+.+..++|+..|..+-+..-.. .-+....+.+..+.|+...|+..|..+-...|-.. .-+...-+.++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34566677777776665543322 23455667777777777777777777766544310 12344455666677777
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++.....+.. . ...+|-..... ||..-.+.|++..|..+|.+... +...+.
T Consensus 149 ~dV~srvepL----a----------------------~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~apr 201 (221)
T COG4649 149 DDVSSRVEPL----A----------------------GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPR 201 (221)
T ss_pred HHHHHHhhhc----c----------------------CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcH
Confidence 7655544221 0 12223333332 77777777888888888877665 444455
Q ss_pred HHHHHHHHHH
Q 015907 356 GYLAKGIILK 365 (398)
Q Consensus 356 ~~~~la~~~~ 365 (398)
...+.+.+..
T Consensus 202 nirqRAq~ml 211 (221)
T COG4649 202 NIRQRAQIML 211 (221)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=51.21 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 205 LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
.|+...|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-.. ...+...+-......|++++|...-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHHHHH
Confidence 355555555555555555555544444555555555555555444433322222 2223333344444455555554443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.29 Score=41.58 Aligned_cols=199 Identities=12% Similarity=0.105 Sum_probs=121.4
Q ss_pred hccHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHHcc
Q 015907 171 KNVLQTRLKKYEETLSISPKDST----ALEGAAVTLAELGDYTRAVSLLQDLAKEKP-----SDPD-VFRLLGEVKYELK 240 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~-~~~~la~~~~~~g 240 (398)
..+.++|+..|++++++.|...+ ++..+..+++.+|+|++-.+.|.+++..-. +..+ ....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45899999999999999987643 778888999999999999999998876321 1111 1111111111223
Q ss_pred CHHHHHHHHHHHHh---hCCCCCHHHH----HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 241 DYEGSAAAYRVSTM---VSKDINFEVL----RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 241 ~~~~A~~~~~~al~---~~p~~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
+.+--.++|+..+. -.. +...| ..+|.+|+..++|..-...+.+..+........ ....+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe-----------dD~kK 186 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE-----------DDQKK 186 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-----------hhhhc
Confidence 33333334443332 221 22333 468999999999988877777665544332110 00000
Q ss_pred cccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH--H----HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 314 PQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR--G----YLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 314 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
...--+++..-..+|..+++-..-...|++++.+...-+. + ..-=|..+.+.|++++|..-|-.|++-.
T Consensus 187 --GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 187 --GTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred --cchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 0011134445667788888888888889999876543322 1 1122455778899999998888887653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.16 Score=46.35 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=31.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.++..|+|.++.-+-.-+.++.| .+.++..+|.|+...++|++|..++...
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555666666666666666666 5666666666666666666666666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.78 Score=43.85 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
++++-|.-+++..+|..++++|...+...|.+ ......++.||..+.+.+.|.++++.|-+.+|. ++-....+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHH
Confidence 45666777889999999999999999987765 346788999999999999999999999999999 88888888
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
-.+....+.-++|+.+..........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 88888999999999999777665443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.042 Score=50.79 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL---GDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
|...+-+..-|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 334444455555556677888999999999999999999999999988765 67778888888999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
|+.++.+++.+.+|+.+...+....|.
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 999999999999999999888888884
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.17 Score=38.88 Aligned_cols=83 Identities=16% Similarity=0.021 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+.....+-...++.+++..++..+--+.|+.++.-..-|.++...|++.+|+..|+......+. .+...-.++.++..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhc
Confidence 3444445556899999999999988899999999999999999999999999999999988877 677777788888888
Q ss_pred CCch
Q 015907 275 KKPD 278 (398)
Q Consensus 275 ~~~~ 278 (398)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.9 Score=42.65 Aligned_cols=184 Identities=15% Similarity=0.063 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCH
Q 015907 174 LQTRLKKYEETLSISPKD----STALEGAAVTLA-ELGDYTRAVSLLQDLAKEKPS--DP----DVFRLLGEVKYELKDY 242 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~ 242 (398)
...|+.+++-+++..+-. ..+...+|.++. ...++++|..++.+++.+... .. .+...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 456788998888533222 347888998887 789999999999999887643 22 3455678889888877
Q ss_pred HHHHHHHHHHHhhCCCC--CHH-HHHHH--HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccC
Q 015907 243 EGSAAAYRVSTMVSKDI--NFE-VLRGL--TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKV 317 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~--~~~-~~~~l--a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (398)
. |....++.++..... ... ..+.+ ...+...+++..|++.++......... .
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----------------------~ 173 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----------------------G 173 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----------------------C
Confidence 7 999999998864331 112 11222 222333479999999998876643211 1
Q ss_pred CCc-hHHH--HHHHHHHhCCChHHHHHHHHHHHHhC------C----CChHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 015907 318 DPI-QVEL--LLGKAYSDGGRVSDAVAVYDRLISSY------P----NDFRGYLAKGII--LKENGKVGDAERMFIQA 380 (398)
Q Consensus 318 ~~~-~~~~--~la~~~~~~g~~~~A~~~~~~al~~~------p----~~~~~~~~la~~--~~~~g~~~~A~~~~~~a 380 (398)
+|. .+.. ..+.++...+..+++++..+++.... | ....+|..+-.+ +...|+++.+...+++.
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 1222 25667777888888888888875421 1 123445544443 45667776766655443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.014 Score=47.88 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD 225 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 225 (398)
....++.+.|.+.|.+++.+.|+....|+.+|......|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445666666666666666666666666666666666666666666666666666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.35 Score=46.58 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.++..+|..+..+..|++|.++|.+.-. .-++..+++...+|++-..+. ..-|+ +...+-.+|..+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe-~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLA----RTLPE-DSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCc-ccchHHHHHHHHH
Confidence 3566666666666666666666654311 113344555544444433322 22355 5666667777777
Q ss_pred HcCCchHHHHHHHH
Q 015907 273 AAKKPDEAVQFLLA 286 (398)
Q Consensus 273 ~~~~~~~A~~~~~~ 286 (398)
..|--++|.+.|.+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 77777777777633
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.11 Score=39.05 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHh---ccHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 159 AGVVNKELSEEEK---NVLQTRLKKYEETLS-ISPKD-STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 159 ~~~~~la~~~~~~---g~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
+..+++++++... .+..+.+.+++..++ .+|.. -+..+.++..+++.++|+.++.+.+..++..|++..+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556677666654 456677888888886 44443 467888888888889999999988888888888877654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.23 Score=40.24 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
++..+|..|.+.|++++|+++|.++.+..... .+.+..+..+....+++.....++.++-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555555555555555555554432221 23444555555555555555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.89 E-value=2.1 Score=42.42 Aligned_cols=203 Identities=11% Similarity=-0.068 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS---PK------DSTALEGAAVTLAELGDYTRAVSLLQ--------DLAKEK 222 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~ 222 (398)
..+..+.+..-.+++..|...+..+.... |. .+..++..|..+...|+.+.|...|. .+....
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~ 442 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS 442 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Confidence 34556777788899999998888776542 22 36688999999999999999999998 333333
Q ss_pred CCCH---HHHHHHHHHHHHccCHHH----HHHHHHHHHh---hCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHH
Q 015907 223 PSDP---DVFRLLGEVKYELKDYEG----SAAAYRVSTM---VSKDINFEVLRGLTNALLA---AKKPDEAVQFLLASRE 289 (398)
Q Consensus 223 p~~~---~~~~~la~~~~~~g~~~~----A~~~~~~al~---~~p~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~ 289 (398)
+.+. -+..++..++...+.... ....++..-. ..|+.+...+..+...-.. .-...++...+..+++
T Consensus 443 ~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~ 522 (608)
T PF10345_consen 443 KFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK 522 (608)
T ss_pred cchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Confidence 3321 133445555555444322 3333333222 1222122222222221122 2233478888888777
Q ss_pred Hh-cCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hH-HH-----HH
Q 015907 290 RL-STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FR-GY-----LA 359 (398)
Q Consensus 290 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~-~~-----~~ 359 (398)
.. ..... ..-..-....++..+. .|+..+.......+....... .. .| -.
T Consensus 523 ~~~~~~~n-------------------~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~ 582 (608)
T PF10345_consen 523 MANNKLGN-------------------SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGM 582 (608)
T ss_pred HHHHhhcc-------------------chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 55 21100 0000112333777776 788888777666666543333 33 33 24
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 015907 360 KGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 360 la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+...+...|+.++|.....+.-.
T Consensus 583 l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 583 LADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 56668889999999988877644
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.7 Score=41.32 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=39.9
Q ss_pred HHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH-HHHHHhccHHHH
Q 015907 103 EIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE-LSEEEKNVLQTR 177 (398)
Q Consensus 103 A~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la-~~~~~~g~~~~A 177 (398)
+...|...+...|.-..-|.- .+.. +| ...+..+|++.+..- |.....|...- .+-...|+.+.-
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~k-fA~~E~klg~~~~s~~Vfergv~ai---------p~SvdlW~~Y~~f~~n~~~d~~~l 133 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKK-FADYEYKLGNAENSVKVFERGVQAI---------PLSVDLWLSYLAFLKNNNGDPETL 133 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHhccCCCHHHH
Confidence 445566666666654433333 3333 55 677777777776555 55555554332 222233455555
Q ss_pred HHHHHHHHhcC
Q 015907 178 LKKYEETLSIS 188 (398)
Q Consensus 178 ~~~~~~~l~~~ 188 (398)
...|+++....
T Consensus 134 r~~fe~A~~~v 144 (577)
T KOG1258|consen 134 RDLFERAKSYV 144 (577)
T ss_pred HHHHHHHHHhc
Confidence 55555555543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.053 Score=40.71 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhCC---ChHHHHHHHHHHHH-hCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 321 QVELLLGKAYSDGG---RVSDAVAVYDRLIS-SYPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 321 ~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
...+++++++.... +..+.+.+++..++ -+|.. -+..+.|+..+++.++|+.++.+....++..|++.++..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 45666888887664 56788999999996 45543 568889999999999999999999999999999988754
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.017 Score=49.68 Aligned_cols=81 Identities=6% Similarity=0.089 Sum_probs=67.7
Q ss_pred ccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 315 QKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLA-KGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 315 ~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
....+.++.+| .+......|-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++.++|++|..|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34556666555 5555566788899999999999999999999988 56667889999999999999999999999999
Q ss_pred HHhh
Q 015907 392 VDQY 395 (398)
Q Consensus 392 ~~l~ 395 (398)
+..+
T Consensus 180 ~eyf 183 (435)
T COG5191 180 IEYF 183 (435)
T ss_pred HHHH
Confidence 8754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.1 Score=42.31 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD--INFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
++..+|..|...|+.++|++.|.++...... .-.+.+..+..+....+++.....++.++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666655543321 12334455555555666666666666555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.12 Score=47.31 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=100.9
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|+.-.|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888888889999999999999999999999999999999998877665554455666666777889999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
-+-.+...-+ ++++...-+......|-++++..++++...+.+
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9988877666 777777777777788889999999988765443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.3 Score=38.93 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=89.3
Q ss_pred HHhccHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC---C-------
Q 015907 169 EEKNVLQTRLKKYEETLSIS----PKD----STALEGAAVTLAELG-DYTRAVSLLQDLAKE----KPS---D------- 225 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~---~------- 225 (398)
...|+++.|..++.++-... |+. ...+++.|......+ ++++|..+++++.++ .+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46799999999999986654 332 346788888888999 999999999999887 221 1
Q ss_pred HHHHHHHHHHHHHccCHH---HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 226 PDVFRLLGEVKYELKDYE---GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
..++..++.+|...+.++ +|..+.+.+-...|+ .+..+...-.++...++.+++.+.+.+++.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 246778899999888765 455555556566677 677775555666668889999999988766
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.9 Score=36.02 Aligned_cols=126 Identities=14% Similarity=0.047 Sum_probs=95.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--D--PDVFRLLGEV 235 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~ 235 (398)
+..+.-+...+..++|+..|...-+..-.. ..+.+..+.+..+.|+...|+..|..+-...|- - ..+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555667889999999998877654333 457788899999999999999999998765432 1 2345556778
Q ss_pred HHHccCHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 015907 236 KYELKDYEGSAAAYRVSTM-VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR 288 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 288 (398)
+...|-|+....-.+..-. .+|- ...+.-.||...++.|++..|..+|.+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~m-R~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChh-HHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 8889999988777665432 2344 56677889999999999999999997763
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.19 Score=51.71 Aligned_cols=172 Identities=11% Similarity=0.122 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhccHHHHHH------HHHH-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 015907 159 AGVVNKELSEEEKNVLQTRLK------KYEE-TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--------P 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~------~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p 223 (398)
.-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++..+|++++|+..-.++.-+. |
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344455666666677776666 5653 334578889999999999999999999999988876542 4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
+....+.+++...+..++...|...+.++..+ .|. ......+++.++...++++.|+.+++.|........
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667888888888889999999999888765 344 344567888888899999999999999877332220
Q ss_pred CCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
. .........+..++..+...+++..|+........
T Consensus 1092 g-----------------~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1092 G-----------------PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred C-----------------ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 0 00011122333477777777887777776666554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.23 Score=41.50 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH-------HHHHHHHHHhcCCC--C----HHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT-------RLKKYEETLSISPK--D----STALEG 197 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-------A~~~~~~~l~~~p~--~----~~~~~~ 197 (398)
++.|+..|..|+-........ ....+..+..+|++|...|+.+. |+..|.++++.... . ..+.+.
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~--~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEK--PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 455555555554332111111 01234556677777777776443 33333333332211 1 234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
+|.+..+.|++++|..+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 555555555555555555555543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.52 Score=44.57 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQD-LAKEKPSDPDVFRLL------GEVKY 237 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~ 237 (398)
...+...+....+...+..++..+|++..+..+++......|..-.+...+.. +....|.+..+...+ +....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 44444455555566666666666666666666666655555555544444433 555555554433333 55555
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
.+|+..++....+++..+.|. ++++..
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~-~~~~~~ 180 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPK-YPRVLG 180 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhh-hhhhHh
Confidence 556666666666666666655 444433
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1 Score=42.56 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----C----------------CCCHH---HHHHHHHHHHHcCCHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI-----S----------------PKDST---ALEGAAVTLAELGDYTR 210 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~----------------p~~~~---~~~~la~~~~~~g~~~~ 210 (398)
|-+...+..++.+...+|+.+.|....++++-. . |.+-. +++..-..+.+.|-+.-
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 888888999999999999988887777776531 1 22221 34444556677899999
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHH-HccCHHHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHcCC---chHH
Q 015907 211 AVSLLQDLAKEKPS-DPDVFRLLGEVKY-ELKDYEGSAAAYRVST-----MVSKDINFEVLRGLTNALLAAKK---PDEA 280 (398)
Q Consensus 211 A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al-----~~~p~~~~~~~~~la~~~~~~~~---~~~A 280 (398)
|.++++-++.++|. +|.+...+..+|. ...+|.=-++.++..- ..-|+ ...-..++..|..... -+.|
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN--~~yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN--FGYSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC--chHHHHHHHHHHhcCChhhHHHH
Confidence 99999999999998 7765555554443 4456666666665542 23343 3333456666666555 4678
Q ss_pred HHHHHHHHHHhc
Q 015907 281 VQFLLASRERLS 292 (398)
Q Consensus 281 ~~~~~~a~~~~~ 292 (398)
...+.+|++..+
T Consensus 439 ~~~l~qAl~~~P 450 (665)
T KOG2422|consen 439 LNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhCc
Confidence 888888877665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.9 Score=47.69 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG-EVKYEL 239 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~ 239 (398)
+...-..+...|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++ .+....
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 4455566778899999999999999999998877777777788888888888877766665555555555544 344556
Q ss_pred cCHHHHHHHHH-------------HHHhhCCCCCHHHH-HHHHHHHH----------HcCCchHHHHHHHHHH-------
Q 015907 240 KDYEGSAAAYR-------------VSTMVSKDINFEVL-RGLTNALL----------AAKKPDEAVQFLLASR------- 288 (398)
Q Consensus 240 g~~~~A~~~~~-------------~al~~~p~~~~~~~-~~la~~~~----------~~~~~~~A~~~~~~a~------- 288 (398)
++++.-..+.. +++-..+..+..+. ..+..... ..|.|..+.++.-+..
T Consensus 1532 ~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1532 SQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred cchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 66665554422 11101111011110 00000000 0111222222221111
Q ss_pred --HHhcC-CCC------C-chhhhccccc------c----------cc-ccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 289 --ERLST-GKS------D-DLSVKDGRSG------D----------KK-ETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 289 --~~~~~-~~~------~-~~~~~~~~~~------~----------~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
+.+.. .++ . +....+...+ + .. ...-....-.+.|...|.+....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 00000 011 1 0001111111 0 00 0111222334677779999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
++-.|.+.. -+.++...|..+...|+...|+..+++.++.+
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999988766 57889999999999999999999999999653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.047 Score=31.90 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788899999999999999999888875
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.046 Score=47.11 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG-AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
|.++..|...+......+.+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...+.+++..+|+.+..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4444455444444444445555555555555555555555444 333444445555555555555555555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.4 Score=39.02 Aligned_cols=221 Identities=11% Similarity=0.016 Sum_probs=142.9
Q ss_pred HHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 136 VIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL 215 (398)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 215 (398)
-.+++++..- |-.++.|+.........++-+.|+...++++...|. ....++.+|-...+-+.-..+|
T Consensus 289 y~~~q~~~y~---------~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~f 356 (660)
T COG5107 289 YIHNQILDYF---------YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCF 356 (660)
T ss_pred HHHHHHHHHh---------hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhH
Confidence 3455666555 777888998888888899999999999988877765 5566777777666666666666
Q ss_pred HHHHHh--------C-------CCC----HH-----------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 216 QDLAKE--------K-------PSD----PD-----------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 216 ~~al~~--------~-------p~~----~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
+++... + .++ ++ +|..+-..-.+..-.+.|...|-++-+..-. ..+++.
T Consensus 357 dk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~-~h~vyi 435 (660)
T COG5107 357 DKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV-GHHVYI 435 (660)
T ss_pred HHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC-Ccceee
Confidence 665431 0 011 11 1222222223334466777777777655422 344443
Q ss_pred HHHH-HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch-HHHH-HHHHHHhCCChHHHHHH
Q 015907 266 GLTN-ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ-VELL-LGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 266 ~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-la~~~~~~g~~~~A~~~ 342 (398)
.-|. -+...|++..|...|+-.+..+ |+. ++.. .-..+...++-..|...
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f---------------------------~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKF---------------------------PDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhC---------------------------CCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 3333 3467899999999998775533 332 2222 55566788999999999
Q ss_pred HHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHhhh
Q 015907 343 YDRLISSYPND--FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK--VKALVDQYS 396 (398)
Q Consensus 343 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~ 396 (398)
|+++++.-..+ -.+|-.+...-..-|+...++.+-++..++.|.. ..+...+|.
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 99888643333 4566666666677788888888888888888764 444545554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.2 Score=38.03 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCHHHHHHHHHHHHHcC
Q 015907 205 LGDYTRAVSLLQDLAKEKPSDP----DVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~la~~~~~~~ 275 (398)
..++++|+..|++++++.+... .++..+..+++.++++++-.+.|.+.+..- .+........+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4588999999999999988653 467778889999999999999998887531 1111222222222222334
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH----HHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL----LGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
+.+--...|+..+..+.... ....|+. +|.+|...++|..-...+.+.-....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-----------------------NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq 176 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-----------------------NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ 176 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-----------------------cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444333221 1233332 99999999998887777766543211
Q ss_pred C------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 352 N------------DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 352 ~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
. -.++|..-..+|-.+.+-..-..+|++++.+..-.|
T Consensus 177 ~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 177 TEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred cccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 1 134555666778888888888888999987754433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.5 Score=38.99 Aligned_cols=192 Identities=10% Similarity=0.066 Sum_probs=106.7
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHH-HcCCHHHH---HHHHHHHHHhCCCC---HHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGA------AVTLA-ELGDYTRA---VSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------a~~~~-~~g~~~~A---~~~~~~al~~~p~~---~~~~~~l 232 (398)
......++...|..++.-...++|+....-..+ -.+.. ...++..- +.+++.+-..+-+. ...+..-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344566778888888877777788764211111 01111 11111111 22222222222221 2234455
Q ss_pred HHHHHHccC-HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH--HHHHHHHhcCCCCCchhhhccccccc
Q 015907 233 GEVKYELKD-YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF--LLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 233 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
|.-+.+.|+ -++|++.++.+++..|. +.......- .+ -...|.+|+.. +-+.+++..
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~-~f-vKq~Y~qaLs~~~~~rLlkLe~----------------- 445 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVF-LF-VKQAYKQALSMHAIPRLLKLED----------------- 445 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHH-HH-HHHHHHHHHhhhhHHHHHHHHH-----------------
Confidence 667777777 78899999999988887 654322211 11 11122222221 111111100
Q ss_pred cccccccCCCc-----hHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 310 KETEPQKVDPI-----QVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 310 ~~~~~~~~~~~-----~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+....+..|. +.... =|..+..+|+|.++.-+-.=..++.| ++.++..+|.|+....+|++|..++..
T Consensus 446 -fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 446 -FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred -HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 0000122232 22222 34567889999999998888888999 899999999999999999999998864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.2 Score=42.73 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=95.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPK----DSTALEGAAVTLAELGDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVK 236 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~ 236 (398)
.++..+.-.|++.+|...|.+.=..+.- ...-.+.++.-++..|..++-..+.++-.+ .+-+.|. .-+..+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmL 713 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEML 713 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHh
Confidence 4667777788888888888653211100 001234445555555665555555444322 1122222 235667
Q ss_pred HHccCHHHHHHHHH------HHH----hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 237 YELKDYEGSAAAYR------VST----MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 237 ~~~g~~~~A~~~~~------~al----~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
...|+.++|+...- -++ +++.. ..+.+..++..+.....+.-|-+.|.+.-.
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~-ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------------- 775 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKA-EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------------- 775 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchh-hhhHHHHHHHHHhhccccchHHHHHHHhcc-----------------
Confidence 77788887776431 222 23333 445556666666666666666666654411
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
...+...+...++|.+|....++ .|.. +++++-.|+.+.+..++++|.+.|.+|
T Consensus 776 ----------------~ksiVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 776 ----------------LKSLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ----------------HHHHhhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 11255566677777777766554 3333 345556666666666666666555443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.28 Score=41.00 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 192 STALEGAAVTLAELGDYTR-------AVSLLQDLAKEKP------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+..+..+|.+|...|+.+. |++.|.++++... +...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4578888999999998554 5555555554332 12467888999999999999999999999986544
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.13 E-value=3.2 Score=42.79 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL-----KDYEGSAA 247 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~ 247 (398)
.+++|+..|++... .|..|--|.+.|.+|..+|+|++-+++|.-+++..|..|..-...-.+..++ .+...|..
T Consensus 534 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777877776543 5666777888888899999999999999999998888765433322222221 12334555
Q ss_pred HHHHHHhhCCC
Q 015907 248 AYRVSTMVSKD 258 (398)
Q Consensus 248 ~~~~al~~~p~ 258 (398)
..--++...|.
T Consensus 613 ~~~~~~~~~~~ 623 (932)
T PRK13184 613 FMLLALWIAPE 623 (932)
T ss_pred HHHHHHHhCcc
Confidence 55555666665
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.37 Score=49.81 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-------C-CCC
Q 015907 195 LEGAAVTLAELGDYTRAVS------LLQD-LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-------S-KDI 259 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~-p~~ 259 (398)
....+......|.+.+|.+ ++.. .-.+.|.....+..++.++...+++++|+..-.++.-+ + |+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~- 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN- 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-
Confidence 4556666777788887777 5442 23356788889999999999999999999988777543 2 33
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVS 337 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~ 337 (398)
....+.+++...+..++...|+..+.++.......-. ...|. ....+++.++...++++
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g-------------------e~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG-------------------EDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC-------------------CCCCchhhhhhHHHHHHhhHHHHH
Confidence 5567888888888999999999999988776543311 12343 34455888889999999
Q ss_pred HHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 338 DAVAVYDRLISSYPN--------DFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 338 ~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.|+.+.+.|+..... ....+..+++.+..++++..|....+....
T Consensus 1075 ~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 999999999875322 245677788888888888888777766554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.066 Score=31.22 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
++..+|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555556666666666666666555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.6 Score=40.99 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=65.0
Q ss_pred HHHHHhccHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 166 LSEEEKNVLQTRLKKYE--ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
......++++++..... +.+..-| ..-...++..+...|-++.|+.+. .++...+.|+ .+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHH
Confidence 34456788888776665 2232223 344666777888888888888764 3455555554 5778888
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.|.+..+. .+ ++..|..||.....+|+++-|..+|+++
T Consensus 336 ~A~~~a~~-----~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 336 IALEIAKE-----LD-DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCCC-----CS-THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHh-----cC-cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88776542 23 6889999999999999999999999775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.42 Score=45.57 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
-+-|.-+++..+|..++++|...+...|.+ ......++.||..+.+.+.|.++++.+-+.+|.++-....+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 345677788999999999999999887766 34677889999999999999999999999999998888888888
Q ss_pred HHHccCHHHHHHHHHHHHhh
Q 015907 236 KYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~ 255 (398)
....|.-++|+.+.......
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 88889999999888776544
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.6 Score=41.39 Aligned_cols=133 Identities=17% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH-H
Q 015907 211 AVSLLQDLAKEKPSDPDVFRL--LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA-S 287 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a 287 (398)
++..+...+.++|.++..+.. +...+...+....+.-.+...+..+|+ +..+..+|+.+....|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555655554322 244555556666666666666666666 666666666666655555555444433 2
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII 363 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 363 (398)
....+.+.. -..+....+.++.....+|+..++.....++....|.++.....+...
T Consensus 129 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDNAE-------------------FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcchHH-------------------HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 221111100 000001111146666667777777777777777777665544444333
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.2 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERM--FIQARFFAPEK 387 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~ 387 (398)
+.++.+|-.+...|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777788888888888888 44666666653
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.48 Score=40.56 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+..|++.++..++.-|+ ++.+-....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~-~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD-DPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC-chHHHHHHH
Confidence 34455567888999999999999999999999999999999999999999999999999999998 666544433
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.66 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA---LEGAAVTLAELGDYTRAVSLLQDLA 219 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al 219 (398)
....|.-++...+.++|+..+.++++..++.+.- +-.+..+|...|+|.+.+.+..+=+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777777777766665543 3334455666677777666654433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.57 Score=40.61 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
..++..++..+...|+++.++..+++.+..+|- +-..|..+-.+|...|+...|+..|++.......
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e 219 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE 219 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence 446667777777777888888888888888887 7777777778888888888888888776665433
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.91 E-value=4.7 Score=36.71 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP--DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
..++-+.+...++..+|+ ...+|+....++...+.. ..-+.+.+++++ .+
T Consensus 90 ~ld~eL~~~~~~L~~npk-sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~---------------------------~D 141 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPK-SYGAWHHRKWVLQKNPHSDWNTELQLCEKALK---------------------------QD 141 (421)
T ss_pred hhHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---------------------------cC
Confidence 356667777778888888 778888888888766544 455556655543 33
Q ss_pred Cc--hHHHH----HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------cCC------HHHHHHHHHHH
Q 015907 319 PI--QVELL----LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE------NGK------VGDAERMFIQA 380 (398)
Q Consensus 319 ~~--~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~a 380 (398)
|. ..|.+ .+.+-.......+=+++..+++..++.+..+|.+...++.. .|+ ...-.+.-..|
T Consensus 142 ~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~sa 221 (421)
T KOG0529|consen 142 PRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSA 221 (421)
T ss_pred cccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHH
Confidence 33 23333 22222333345666788888888888899999888777762 232 23445667788
Q ss_pred HhhCCCChHHHHH
Q 015907 381 RFFAPEKVKALVD 393 (398)
Q Consensus 381 l~~~p~~~~~~~~ 393 (398)
+-.+|+|.-+|.-
T Consensus 222 iFTdp~DqS~WfY 234 (421)
T KOG0529|consen 222 IFTDPEDQSCWFY 234 (421)
T ss_pred HhcCccccceeee
Confidence 8889999888753
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.4 Score=35.80 Aligned_cols=109 Identities=14% Similarity=0.015 Sum_probs=54.0
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
...+..+..+-++.-..+++++|.-..++..++.-- .--..+|..+++++++... ..++........|...+|
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da- 265 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEA- 265 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhh-
Confidence 333445555556666666777776666666655432 2234566666666665432 111122222222221111
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..+.+.+.-......++.+..++|+..+|++.++..
T Consensus 266 -----~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 266 -----QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred -----hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122222211223356677777777777777777555
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.39 Score=34.23 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
++..+|.++...|++++|+..+++++.+.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=6.1 Score=37.16 Aligned_cols=203 Identities=14% Similarity=0.036 Sum_probs=133.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|-+...+..+-.++..+..+.-......+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3333445555555555556666667777777764 5677899999999988 6778888999999988888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhC-CCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVS-KDI----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
.|.. ++-..+..+|.+++... |.. --++|..+-.. --.+.+.-+....+.....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~l------------------ 199 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKL------------------ 199 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhh------------------
Confidence 7776 88899999999988643 210 11233333211 1233444444443332211
Q ss_pred cccccccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------cC
Q 015907 310 KETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE--------------------NG 368 (398)
Q Consensus 310 ~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g 368 (398)
......+... +-.-|....++.+|+..+...++.+..+..+.-++...+.. -.
T Consensus 200 ------g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~r 273 (711)
T COG1747 200 ------GEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGR 273 (711)
T ss_pred ------ccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccc
Confidence 1112233333 44567778899999999999999998888877777766655 44
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 015907 369 KVGDAERMFIQARFFAPE 386 (398)
Q Consensus 369 ~~~~A~~~~~~al~~~p~ 386 (398)
++.+++.-|++.+.++..
T Consensus 274 nf~~~l~dFek~m~f~eG 291 (711)
T COG1747 274 NFFEALNDFEKLMHFDEG 291 (711)
T ss_pred cHHHHHHHHHHHheeccC
Confidence 566777777776665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.1 Score=40.32 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=75.0
Q ss_pred HHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 201 TLAELGDYTRAVSLLQ--DLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
.....++++++..... +.+..-| ..-...++..+...|.++.|+..-+ +++..+.|+ .+.|+.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeLA---l~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPDHRFELA---LQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHH---HHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHHH---HhcCCHH
Confidence 3445688888877765 2222223 3345667777778888877766542 466666655 7889999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH--------hC
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS--------SY 350 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~ 350 (398)
.|.+.. ...+....|-.||.....+|+++-|..+|+++-. .-
T Consensus 336 ~A~~~a------------------------------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~ 385 (443)
T PF04053_consen 336 IALEIA------------------------------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSS 385 (443)
T ss_dssp HHHHHC------------------------------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHH------------------------------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHH
Confidence 998874 2333445677799999999999999999988532 12
Q ss_pred CCChHHHHHHHHHHHHcCCHHHH
Q 015907 351 PNDFRGYLAKGIILKENGKVGDA 373 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A 373 (398)
-.+.+.+..++......|++.-|
T Consensus 386 ~g~~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT-HHHH
T ss_pred hCCHHHHHHHHHHHHHccCHHHH
Confidence 33444444555555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.32 Score=27.50 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSL 214 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~ 214 (398)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344444555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.13 Score=26.63 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 355 RGYLAKGIILKENGKVGDAERMFI 378 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~ 378 (398)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777766654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.42 Score=34.07 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKD---------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
.....|++.+|++.+.+.++..... ..++..+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3457899999988888877653221 35678899999999999999999999998753
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.37 E-value=4.8 Score=34.80 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=125.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--CCCHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPK--------DSTALEGAAVTLAELGDYTRAVSLLQDLAKE---K--PSDPDV 228 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~--p~~~~~ 228 (398)
..++.-....+++++|+..|.+.+..... ...+...++.+|...|++..-.+.....-+. . |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45667777889999999999999876321 1346788999999999987655544433221 1 222222
Q ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHhhCCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhh
Q 015907 229 FRLLGEV-KYELKDYEGSAAAYRVSTMVSKDIN-----FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK 302 (398)
Q Consensus 229 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 302 (398)
...+..- -.....++.-+......++...... ...-..+..++...|+|.+|+......+..+....+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD------ 160 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD------ 160 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC------
Confidence 2222211 1223456666666666665532201 122345788889999999999998776654432211
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh-----CCCChH--HHHHHHHHHHHcCCHHHHHH
Q 015907 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS-----YPNDFR--GYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~la~~~~~~g~~~~A~~ 375 (398)
.+.-.+++..-..+|....+..++..-+..+-.. .|.... .-..-|..+..-.+|..|..
T Consensus 161 -------------K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~S 227 (421)
T COG5159 161 -------------KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASS 227 (421)
T ss_pred -------------ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHH
Confidence 2333466677788888888888777766655432 232222 22334556667778888888
Q ss_pred HHHHHHhh
Q 015907 376 MFIQARFF 383 (398)
Q Consensus 376 ~~~~al~~ 383 (398)
+|-.+++-
T Consensus 228 YF~Ea~Eg 235 (421)
T COG5159 228 YFIEALEG 235 (421)
T ss_pred HHHHHHhc
Confidence 88888763
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.30 E-value=5.6 Score=35.30 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKE----KP--SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINFEV 263 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 263 (398)
-..+..+|...++|.+|+.+...++.. +. .-.+++..-..+|+...+..+|...+..|-... |. ...+
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP-qlQa 209 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP-QLQA 209 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH-HHHH
Confidence 346788999999999999988777652 22 124566666788888899998888887765432 21 1122
Q ss_pred --HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchH---HHHHHHHHHhCCChHH
Q 015907 264 --LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV---ELLLGKAYSDGGRVSD 338 (398)
Q Consensus 264 --~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~ 338 (398)
-..-|.++....+|..|..+|-++.+.+..- . ++..+ .-++-.+-...+..++
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~---------------------~-~~v~A~~sLKYMlLcKIMln~~dd 267 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL---------------------D-DDVKALTSLKYMLLCKIMLNLPDD 267 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHcccccc---------------------C-CcHHHHHHHHHHHHHHHHhcCHHH
Confidence 2233556666789999999997776644322 1 11111 1123333344455554
Q ss_pred H--HHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCC
Q 015907 339 A--VAVYDRLISSYPNDFRGYLAKGIILKE--NGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 339 A--~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 386 (398)
- +-.-..+++....+.++....+..+.+ +.+|+.|...|+.-+..+|=
T Consensus 268 v~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 268 VAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 3 333445666666677888888877753 35788888888877776664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.65 Score=40.27 Aligned_cols=64 Identities=22% Similarity=0.146 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
...++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3457778888888888899999999999999998888888888888889998888888887765
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.16 Score=26.23 Aligned_cols=21 Identities=33% Similarity=0.215 Sum_probs=9.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLL 215 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~ 215 (398)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.98 Score=38.72 Aligned_cols=67 Identities=10% Similarity=-0.104 Sum_probs=54.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 296 (398)
..++=..+...++++.|..+.++.+.++|+ ++.-+...|.+|.+.|.+.-|+..+.......++.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 344556777788888888888888888888 8888888888888888888888888887777777765
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.8 Score=34.32 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKE------KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINFEVL 264 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~ 264 (398)
..++.++++.|.|.+|+......+.. .|.-..++..-..+|....+..++...+..+-... |. ...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~ 207 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQ 207 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHH
Confidence 45678889999999999988776542 23335567777888888888888877776664432 22 22222
Q ss_pred --HHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 265 --RGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 265 --~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
..-|.....-.+|..|..+|-++.+.+
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhcc
Confidence 223555677788999999997776644
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.42 Score=44.56 Aligned_cols=88 Identities=13% Similarity=-0.047 Sum_probs=74.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL---KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|. ...+|+.|+.++...+++.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-IQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHhhHHHh
Confidence 345677899999999999999999999999888875 5666788888899999998 899999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015907 281 VQFLLASRERLS 292 (398)
Q Consensus 281 ~~~~~~a~~~~~ 292 (398)
+++...+....+
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 999866644444
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.68 E-value=3 Score=37.85 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
+-..|...+.|+.|-....+.. .|+ .....+.+|.+..-+++|..|.++|-+|+...|+
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5566666666666666555543 121 2345566666666666777777777777666665
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.6 Score=39.74 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=71.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcC--------CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSIS--------PKD----------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
|..+++.++|..|.--|..++++. |.. ..+-..+..||..+++.+-|+....+.+.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 456677788888887777777652 111 12456788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
.-+...|.|+..+.+|.+|...+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.64 E-value=2 Score=35.13 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=60.1
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCCch
Q 015907 203 AELGDYTRAVSLLQDLAKEK-PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD---INFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~la~~~~~~~~~~ 278 (398)
...-.-++|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+. .+++++..|+.++...|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33434467777666554322 256888888888777 57899999999999998654 36889999999999999999
Q ss_pred HHHHH
Q 015907 279 EAVQF 283 (398)
Q Consensus 279 ~A~~~ 283 (398)
.|--+
T Consensus 196 ~AYiw 200 (203)
T PF11207_consen 196 QAYIW 200 (203)
T ss_pred hhhhh
Confidence 88643
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.34 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.072 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
+++..||.+-...++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.29 E-value=14 Score=37.83 Aligned_cols=177 Identities=11% Similarity=-0.048 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS----PKDSTALEGAAVTLAELGDY--TRAVSLLQDLAKEKPSDPD------ 227 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 227 (398)
-+..++..|...|++++|++.+.+..... +.....+...-..+...+.. +-..++-.-.++.+|...-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 35677888889999999999998887733 33334444444555555555 5555665556665553210
Q ss_pred -------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc--------CCchHHHHH--HHHHHHH
Q 015907 228 -------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA--------KKPDEAVQF--LLASRER 290 (398)
Q Consensus 228 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--------~~~~~A~~~--~~~a~~~ 290 (398)
.-.....-|......+-++.+++.++..........+..+...|... ++-+++.+. .++....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 00111223455677888899999998876553455555666555432 222344444 2222222
Q ss_pred hcCCCCCchhhhcccccccccccccc-CCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQK-VDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
++.... ......+. ..+...+...+.++.+.|+.++|+..|-..+.
T Consensus 666 l~~s~~------------Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDL------------YDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcc------------cCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222111 00000112 22233444488888899999999998877665
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.1 Score=40.81 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=51.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
+..||..+++.+-|+....+.+.++|..+.-+..-|.|+..+.+|.+|...+--+.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987665443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.6 Score=34.55 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHH
Q 015907 318 DPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN----DFRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 318 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+..+..+.+|..|. ..+.++++..+.+++++.+. +++++..|+.++..+|+++.|.-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 33455556887777 57899999999999997654 48999999999999999998854
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.9 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHccCHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG---EVKYELKDYEGSAAAYR 250 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~ 250 (398)
++...+.++|+..++++++..++.+..+..+| .+|...|+|.+.+++--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655554444333333 44445555555555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=15 Score=36.51 Aligned_cols=211 Identities=10% Similarity=-0.032 Sum_probs=126.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDS----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
++..-....+.+.|...+.+.....+-+. .++..+|.-....+...+|..++..+..... +...+-....+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHc
Confidence 34444455666778777776544433222 2444555444444335677777776554322 223333334455578
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh-hhcccccccccc---ccc
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS-VKDGRSGDKKET---EPQ 315 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~ 315 (398)
++++.+...+..+-..... .....+.+|.++...|+.++|..+|+++... ..--+.+. ..+|..-..... ...
T Consensus 326 ~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAAQRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred cCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHHHHcCCCCCCCCCCCCchh
Confidence 8998888888775443344 6778899999999999999999999886331 11001110 011111000000 000
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
...+.......+..+...|+...|...+..++.. .+..-...++.+....|.++.++....++
T Consensus 403 ~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0011223445788889999999999999988874 34566788888889999999888776554
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.43 Score=27.33 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
++..||.+-...++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.47 E-value=11 Score=34.45 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD--YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL----KDYEGSA 246 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~ 246 (398)
-+++-+.+...++..+|+...+|+....++.+.+. +..=+.+..++++.+|.+..+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56677888899999999999999999999987764 57888999999999999988876554444332 2356778
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
++..++|..++. +..+|.....++.
T Consensus 170 ~ftt~~I~~nfS-NYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFS-NYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccch-hhhHHHHHHHHHH
Confidence 889999999998 8999988777765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.4 Score=26.92 Aligned_cols=41 Identities=7% Similarity=-0.042 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
..|..+-..+.+.|++++|.+.|++..+..-..+...+..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555555555556666666666555554322234444433
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.1 Score=39.28 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
|..+|.+|+.+.|.....++.+|.++...|+.-.|+-+|-+++-.... .+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555433322 34444444444443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.79 Score=40.18 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 339 AVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 339 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
|+.+|.+|+.+.|+....++.+|.++...|+.=+|+-+|-+++-...-.+.+..|+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL 56 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENL 56 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 67899999999999999999999999999999999999999986654446665554
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=90.90 E-value=14 Score=34.63 Aligned_cols=97 Identities=16% Similarity=-0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC---
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDY-------TRAVSLLQDLAKEK--- 222 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~--- 222 (398)
.....+|..++..++|+-|...|+.+.+-.-++ +.+....|.++...+.. ++...+++.++...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345568999999999999999999887744322 12334444444444422 13333333332211
Q ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 223 --------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 223 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
..-..+....+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111234444556666666666665555554443
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=19 Score=35.96 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+..-+........++++....++..+-..........+.+|..+...|+.++|..+|+++..
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444455556788888877777775443445677888899998889999999999988744
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=13 Score=33.02 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=71.8
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVF 229 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 229 (398)
...+|..+.++..++.- +..-..+|...|+++++.. +..+.........|...+|. .+.+.+. ..+.
T Consensus 211 LeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~rRDtnvl~YIK 278 (556)
T KOG3807|consen 211 LEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LRRDTNVLVYIK 278 (556)
T ss_pred HhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hhcccchhhHHH
Confidence 34456666666665543 3344677888888888743 22222333333333332222 2222211 2355
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
..++.|..++|+..+|++.|+...+..|-. -..++-++...+....-|.+....+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998877641 1235566666666665555555444
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=18 Score=34.41 Aligned_cols=223 Identities=11% Similarity=-0.051 Sum_probs=123.9
Q ss_pred HHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHH
Q 015907 104 IKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKK 180 (398)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 180 (398)
.+.+.......|+++......-+++ .| .+.|+.++...+... ...-....++.+|+++.-..+|.+|...
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~-------~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR-------MKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344445556777666655422333 56 888888888776311 0012234567889999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCCCCHH---------------------
Q 015907 181 YEETLSISPKDSTALEGAA-VTLAE--------LGDYTRAVSLLQDL---AKEKPSDPD--------------------- 227 (398)
Q Consensus 181 ~~~~l~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~--------------------- 227 (398)
+....+...-.--.|..++ -|+.+ .|+-+.|..+++.. +...|.+..
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 9988876543333344444 33322 23444444444332 222222110
Q ss_pred -----HHHHHHHHHHH--ccCHHHHHHHHHHHHh---h-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC
Q 015907 228 -----VFRLLGEVKYE--LKDYEGSAAAYRVSTM---V-SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 228 -----~~~~la~~~~~--~g~~~~A~~~~~~al~---~-~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 296 (398)
.++.++.++.. ....++.. -++..++ . +++...-.+..+|.++...|+...|..+|..+.+.......
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 11222222221 11122222 1111111 1 22211224567899999999999999999887643111100
Q ss_pred CchhhhccccccccccccccCCCchHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCC
Q 015907 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR-VSDAVAVYDRLISSYPN 352 (398)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 352 (398)
..--+..+.+.+|..|...|. ..++..++.+|-+...+
T Consensus 485 ------------------d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 485 ------------------DLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred ------------------ccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 111234566779999999988 99999999999876533
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.73 E-value=41 Score=38.17 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHh---hCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 242 YEGSAAAYRVSTM---VSKDI---NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 242 ~~~A~~~~~~al~---~~p~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
..+-+-.+++++- .+|+. -.+.|...|.+....|+++.|...+-.|.+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-------------------------- 1698 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE-------------------------- 1698 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--------------------------
Confidence 4444445555432 23321 456899999999999999999999877733
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CC----------C------hHHHHHHHHHHHHcCCH--HHHHHH
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY-PN----------D------FRGYLAKGIILKENGKV--GDAERM 376 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~ 376 (398)
..+..+....|..+...|+...|+.++++.++.+ |+ . ..+.+.++......|++ .+-+.+
T Consensus 1699 -~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~ 1777 (2382)
T KOG0890|consen 1699 -SRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKY 1777 (2382)
T ss_pred -cccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHH
Confidence 4466788889999999999999999999999653 22 1 12444555555566664 356778
Q ss_pred HHHHHhhCCCC
Q 015907 377 FIQARFFAPEK 387 (398)
Q Consensus 377 ~~~al~~~p~~ 387 (398)
|+.+.+..|..
T Consensus 1778 Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1778 YHDAKAILPEW 1788 (2382)
T ss_pred HHHHHHHcccc
Confidence 89999998843
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=89.40 E-value=4.6 Score=34.77 Aligned_cols=58 Identities=26% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
....+|..|+..|++++|+.+|+.+....... ..++..+..|+...|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44566666666666666666666665432211 23444555666666666555554433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=89.24 E-value=6.7 Score=33.46 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYE-LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+..+|.+..+.|+|++.+.++++++..+|.- .+=...+..+|-. .|....+...+.................+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 5678888889999999999999999887643 3344455555532 3445555555554444332200112222222221
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHH--HHHHHHh-----CC-----ChHHH
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELL--LGKAYSD-----GG-----RVSDA 339 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--la~~~~~-----~g-----~~~~A 339 (398)
.. =-++=......++.++... +... ..++. .+.++ .|..|.- .| -.+.|
T Consensus 84 ~k-ie~EL~~~C~eii~lId~~----------------Lip~-~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 145 (236)
T PF00244_consen 84 KK-IEDELIDICNEIIRLIDKS----------------LIPS-ATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKA 145 (236)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHT----------------CHHH-S-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHH----------------Hhcc-ccchhHHHHHHHHhccccccccccccchhhHHHHHHH
Confidence 10 0011122222222222211 0000 01111 22222 5555522 12 13678
Q ss_pred HHHHHHHHH-----hCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 015907 340 VAVYDRLIS-----SYPNDFR---GYLAKGIIL-KENGKVGDAERMFIQARF 382 (398)
Q Consensus 340 ~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 382 (398)
...|++|++ +.|.+|. ...+.+..| ..+|+.++|+...++++.
T Consensus 146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888888876 4566653 445555555 458999999998888775
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.7 Score=37.59 Aligned_cols=59 Identities=20% Similarity=0.089 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.++..|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667777888888888888888888777777778888888888777777776653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.9 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.+...+..|...|.+.+|+.+.++++.++|- +...+..+-.++...|+--.+...|++..+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 4445677888999999999999999999998 89999999999999999999999998876654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.99 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 368 GKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
|+.+.+...|++++...|.++..|+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 456667777777777777777777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=88.85 E-value=4.2 Score=41.93 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=75.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAEL----G---DYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
..++.....|+.|+..|++.-...|... ++.+..|..+... | .+++|+..|+++- -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 3566777899999999999999998764 5777777766543 3 4667777776653 24555667888899
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
+|..+|++++-+++|.-+++..|. .|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 587 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQ-HPE 587 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999987 654
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=88.81 E-value=14 Score=31.83 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
...+|.-|...|++++|+.+|+.+....... ..+...+..|+...|+.++.+...-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3449999999999999999999997654332 4577788999999999988877665443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.87 Score=40.36 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..+++.+-...+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++......
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 33478888888999999888888888888888999999999999999999999999999999998765443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=88.70 E-value=15 Score=31.84 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=51.7
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDPDVFRLLGEVKYELKDYE- 243 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~- 243 (398)
..++|++|++.+... +..+.+.|++..|.++..-.++. .+.+......++.+....+.-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 345666666655443 44455555555555554443332 1223333445555555443222
Q ss_pred HHHHHHHHHHhhC-----CCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 244 GSAAAYRVSTMVS-----KDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 244 ~A~~~~~~al~~~-----p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
+-..+.+++++.. |..++..+..+|..+.+.|++.+|..+|
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2333334444332 3337888899999999999988888887
|
; PDB: 3LKU_E 2WPV_G. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.2 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 358 LAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+.++..|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556666666666666666666663
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=88.00 E-value=3.4 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+...|..+...+.+.|++++|.++|+++.+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999999999999876
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.8 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
|+.+.|...|++++...|.++..|...+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999998877643
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.88 E-value=22 Score=35.68 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKD-STALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
....+...|+-|+..-+.- ..+++. ..+....|.-++..|++++|...|-+.+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3445555566665554432 222222 33555666666777777777777766655
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=87.70 E-value=20 Score=31.98 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------------ccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVFRLLGEVKYE--------------------------LKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------------~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
++|+.+-.-++.+.|..++++-.++.+.+. .+-.+++...+.+++......-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 466666666666666666665555544433 122566777777777654320222
Q ss_pred HHHHHHHHHHH-----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChH
Q 015907 263 VLRGLTNALLA-----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVS 337 (398)
Q Consensus 263 ~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 337 (398)
..-.++.++.. .-+|..-..+|.-... . ...| -+..+.+.......-.+
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~-~------------------------apSP-vV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQ-A------------------------APSP-VVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-h------------------------CCCC-eEeehHHHHHHHhhhHH
Confidence 33333333322 2234444444443322 1 2222 34445555555555666
Q ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 338 DAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 338 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.++...+..... -.++...+-..|.++.++|+.++|...|++++.+.++..+.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 777776666553 22344566778888999999999999999999988877654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=87.65 E-value=11 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
++++.|++++.+ +.+++.|..++..+.
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 455555555543 234555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.36 E-value=27 Score=33.14 Aligned_cols=182 Identities=12% Similarity=-0.031 Sum_probs=113.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.|-+...+..+-.++.+.-.++-....+.+++.... +..+++.++.+|... ..++-...+++..+.+-+ +...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 344555666666677666677777788888888764 467889999999988 677788899999998877 77777788
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+..|.. ++-+.+..+|.+++...-...+ ...-.++|..+-. .--.+.+.-+....+.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q-------------------~~~i~evWeKL~~--~i~dD~D~fl~l~~kiq 196 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQ-------------------NAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQ 196 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhh-------------------hhhHHHHHHHHHH--hccccHHHHHHHHHHHH
Confidence 887776 8889999999988654321100 0000012211111 11122333222222222
Q ss_pred HhC-CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 348 SSY-PNDFR-GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 348 ~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+.. ..... ++..+-.-|....++.+|++.+...++.+..+..+.-++
T Consensus 197 t~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 197 TKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred HhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 111 11112 222223445667889999999999999888877766543
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.15 E-value=11 Score=34.28 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--CCHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSI-----SPKD-STALEGAAVTLAELGDYTRAVSLLQDLAKEK--P--SDPD 227 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p--~~~~ 227 (398)
+..|+.+..++...|+...-...+...+.. +... ......+-+.|...+.|+.|..+..+..--. . ..+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 356777777777788766655555554432 1111 3345566778888889999988887765211 1 1244
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..+.+|.+..-+++|..|.++|-+++...|.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5677888888899999999999999999886
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.8 Score=25.70 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
+.+|..|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.50 E-value=23 Score=32.45 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD--INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
.++..+|.-|...|+++.|++.|-++-..-.. .....+.++..+-...|+|.....+..++.......
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~---------- 220 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN---------- 220 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh----------
Confidence 35667788888888888888888875443222 023456667777777888877777776665432000
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH--------hCCCChHHHHHHHHHH-HHcCCHH---H
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS--------SYPNDFRGYLAKGIIL-KENGKVG---D 372 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~-~~~g~~~---~ 372 (398)
......-|......-|.+...+++|..|..+|-.+.- +.|.+..+|..+..+- +...++. .
T Consensus 221 -------~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi 293 (466)
T KOG0686|consen 221 -------ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVI 293 (466)
T ss_pred -------hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHH
Confidence 0001122333444566666677788888877765532 1233433333322111 1111111 1
Q ss_pred HHHHHHHHHhhCCCChHHHHHhhh
Q 015907 373 AERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 373 A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
.-..|+..+++.|.-.+.+...|+
T Consensus 294 ~n~~Fk~flel~Pqlr~il~~fy~ 317 (466)
T KOG0686|consen 294 KNESFKLFLELEPQLREILFKFYS 317 (466)
T ss_pred cchhhhhHHhcChHHHHHHHHHhh
Confidence 123466666777766665555554
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=86.45 E-value=23 Score=31.54 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHHhC-CCC
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL--------------------------GDYTRAVSLLQDLAKEK-PSD 225 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------------g~~~~A~~~~~~al~~~-p~~ 225 (398)
--++|+..-.-...+.|..++++-.++.++.+. +-.+++...+.+++... |.-
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP 290 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP 290 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Confidence 346777777777788888888877776665433 33567888888888754 333
Q ss_pred HHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 226 PDVFRLLGEVKYE-----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 226 ~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
....-.++.++.. .-+|..-..+|.-...+.|+ +.+-.+.+.+.....-++.++...+.... .+
T Consensus 291 YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS--PvV~LNRAVAla~~~Gp~agLa~ve~L~~----~~----- 359 (415)
T COG4941 291 YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS--PVVTLNRAVALAMREGPAAGLAMVEALLA----RP----- 359 (415)
T ss_pred HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC--CeEeehHHHHHHHhhhHHhHHHHHHHhhc----cc-----
Confidence 2333334444433 23677778888888888886 66666677776666666667766544322 00
Q ss_pred hhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 301 VKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
..+.. ..+...|..+.++|+.++|...|++++.+.++..+..+...
T Consensus 360 ---------------~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 360 ---------------RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ---------------ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 01111 23334899999999999999999999999988776555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=86.34 E-value=2 Score=23.78 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQ 216 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~ 216 (398)
.|..+...|.+.|+.++|.++++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444444444444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.11 E-value=19 Score=30.10 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
..+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4556788999999999999999999999999999999999999999999999999998763
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=85.95 E-value=2.5 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
...|..+...|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34555566666666666666665543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.94 E-value=5.4 Score=38.56 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..++.+.+++++|....++ .|+.-+++++-.|..+....++++|.+.|.++
T Consensus 780 VqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445556667766655544 34333446666677777777777777776555
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=85.88 E-value=17 Score=33.59 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDST--ALEGA--AVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 221 (398)
...+...+..++|..|...|..+...-|.... .+..+ |..+...-++.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567778899999999999999885344333 44444 44557788999999999998775
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.7 Score=39.93 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSIS---------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
...+..++.-.|+|..|++.++.. +++ +-....++..|-+|+.+++|.+|+..|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888777776642 111 22344677777777777788888777777664
|
|
| >KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.60 E-value=25 Score=31.11 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--SPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|+...+++..+...++.|+|..|-.++--...+ +|+ ...++++.-..-.-+.+|+.|++-+.+.-+
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888899999999999999999998876544433 332 344555444445566789999988877654
|
|
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=85.49 E-value=23 Score=32.50 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=42.5
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 218 (398)
....-+|+..++.++...|.+......+..+|..+|-...|...|..+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 455678899999999999999999999999999999999999999654
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=85.17 E-value=15 Score=28.02 Aligned_cols=143 Identities=11% Similarity=0.109 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHH--HHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 85 EERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVA--VVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 85 ~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A--~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
...|-.+.+....+..++..++..+.....|.....|.+ -.+ .+.| ..+++..-.++
T Consensus 3 ~kkLmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvI-CNi---iDaa~C~yvv~~LdsIG----------------- 61 (161)
T PF09205_consen 3 LKKLMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVI-CNI---IDAADCDYVVETLDSIG----------------- 61 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHH-HHH---HHH--HHHHHHHHHHHG-----------------
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHcCcCCccccceee-eec---chhhchhHHHHHHHHHh-----------------
Confidence 445666777777888888888888888777655555544 111 1211 11111111111
Q ss_pred HHHHHH--HHhccHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 163 NKELSE--EEKNVLQTRLKKYEETLSISPKDSTALEGAA-VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 163 ~la~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
..+ ...|+...-+.+|-..-. .. -+..+| ..+..+|+-++--+.+....+....++..+..+|.+|.+.
T Consensus 62 ---kiFDis~C~NlKrVi~C~~~~n~----~s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl 133 (161)
T PF09205_consen 62 ---KIFDISKCGNLKRVIECYAKRNK----LS-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL 133 (161)
T ss_dssp ---GGS-GGG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT
T ss_pred ---hhcCchhhcchHHHHHHHHHhcc----hH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh
Confidence 111 123444444444443211 11 122233 3445666666666666666655555677777777778777
Q ss_pred cCHHHHHHHHHHHHhhC
Q 015907 240 KDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~ 256 (398)
|+..++-+.+.+|-+..
T Consensus 134 g~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 134 GNTREANELLKEACEKG 150 (161)
T ss_dssp T-HHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHhc
Confidence 87777777777776543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.79 E-value=4.4 Score=33.59 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
.-+.+.+...+|+...+.-++-.|.+......+-.+|.-.|+|++|...++-+-.+.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34567788999999999999999999999999999999999999999999999999998643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.68 E-value=49 Score=34.83 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=9.3
Q ss_pred HhccHHHHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEET 184 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~ 184 (398)
..++|+.|+.++.++
T Consensus 892 ~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHHHHHHHHHHHc
Confidence 456677776666554
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=84.36 E-value=16 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCC---CCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 246 AAAYRVSTMVSK---DINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 246 ~~~~~~al~~~p---~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
...|+..+.... + ..+.|.....-... .+.-..-..+++++...+...+. ...+
T Consensus 5 r~~~e~~i~~~~~~dD-PL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~------------------Y~nD 65 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDD-PLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDER------------------YKND 65 (126)
T ss_dssp HHHHHHHHHCCGGSS--CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGG------------------GTT-
T ss_pred HHHHHHHHHHccCCCC-ChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHh------------------hcCC
Confidence 445555555433 2 34555544433332 24556667788888887655422 2222
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
+..+..| ..|...-. ++..+|..+... .-..+..|...|..+...|++++|.+.|+.++
T Consensus 66 ~RylkiW--i~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 66 ERYLKIW--IKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHH--HHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2222222 23333222 888888888764 45568889999999999999999999999875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.61 E-value=36 Score=31.27 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCCHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-------KDINFE 262 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 262 (398)
.++..+|.-|...|+++.|+..|.++-.... .....+.++-.+-..+|+|.....+..++...- +...+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4788899999999999999999999654332 224567888888888999988888877776541 111223
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
....-|.+.+..++|..|..+|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566666777999999998444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.34 E-value=30 Score=34.89 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
..+...|.-++..|++++|...|-+.+..- |.. +. .-+....+..+-..+++.+.+..-.+.+--..|-.||.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--Vi----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi 442 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--VI----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--HH----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence 566677889999999999999999988643 221 11 11122233334444455555544344444445666777
Q ss_pred HccCHHHHHH
Q 015907 238 ELKDYEGSAA 247 (398)
Q Consensus 238 ~~g~~~~A~~ 247 (398)
++++.++-.+
T Consensus 443 Klkd~~kL~e 452 (933)
T KOG2114|consen 443 KLKDVEKLTE 452 (933)
T ss_pred HhcchHHHHH
Confidence 7666554433
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.85 E-value=35 Score=29.85 Aligned_cols=122 Identities=13% Similarity=-0.011 Sum_probs=79.0
Q ss_pred hccHHHHHHHHHHHHhc-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSI-SPKD-----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------DPDVFRLLGEVKYE 238 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~ 238 (398)
....++-++-+.+.++. ..++ .++|.++|..|.+.++.+.+.+++.+.+...-. -.-.-..+|.+|..
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 33444445555444332 2222 579999999999999999999999888764321 12234567778877
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDIN--FEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+.=..+.++.....++...+.. .......|.......++.+|-.++..++..+.
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7777888888888888765411 11222345555667788899888866654443
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=81.29 E-value=8.3 Score=29.79 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.+.....+......|++.-|.++...++..+|++..+....+.++..+|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444555555666677777777777777777777776666666666554
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=81.21 E-value=3 Score=38.37 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-------H-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLA-------K-EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al-------~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
.+.+++..+|||..|++.++..- . .-+-...+++.+|.+|..+++|.+|++.|..++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666654321 1 012234455666666666666666666666654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=80.79 E-value=14 Score=28.13 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=41.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.++..+|+-++--..+.........++..+..+|.+|.+.|+..+|-+++.+|-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34567788887778888877656667999999999999999999999999998764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=80.45 E-value=5.5 Score=30.77 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDY 208 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 208 (398)
.......+...+..|++.-|..+.+.++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345667788888999999999999999999999999999999988776643
|
|
| >TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit | Back alignment and domain information |
|---|
Probab=80.44 E-value=21 Score=27.72 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhcCCCCHH
Q 015907 162 VNKELSEEEKN-VLQTRLKKYEETLSISPKDST 193 (398)
Q Consensus 162 ~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~ 193 (398)
..+|..+...| +..++..+|-+++...|+-.+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 45777778888 888888888888888776443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.33 E-value=39 Score=32.82 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.+.|+++.|.++..++ ++..-|..||.+....+++..|.++|.++
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555555544332 33445556666666666666666666555
|
|
| >PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=80.08 E-value=0.55 Score=45.37 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHH--
Q 015907 179 KKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLA--KEKPS-DPDVFRLLGEVKYELKDYEGSAAAYRVS-- 252 (398)
Q Consensus 179 ~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a-- 252 (398)
.++.++-...+. ....+..-+..+...|++..|...+.++- .+.|. ........+.+....|+++.|+..+...
T Consensus 10 ~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~ 89 (536)
T PF04348_consen 10 QYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDL 89 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCc
Confidence 333444333332 23345556688889999999998888766 23332 2345566678888889999999988741
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 253 TMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 253 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
..+.+......+...+.++...|++-+|...+-.....+
T Consensus 90 ~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL 128 (536)
T PF04348_consen 90 WQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLL 128 (536)
T ss_dssp ---------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 122222133455667888888888888887765544433
|
; PDB: 3CKM_A. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=80.03 E-value=3.3 Score=21.74 Aligned_cols=21 Identities=10% Similarity=0.444 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~a 218 (398)
+-..|.+.|++++|...+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 333444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 30/205 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ + P ++ L + + R+ K+ P + + LG V
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
E + + YR + + D + L AL+AA + AVQ +++ +
Sbjct: 79 ERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQ-------- 129
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
+P + LG GR+ +A A Y + I + PN
Sbjct: 130 -------------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
Query: 356 GYLAKGIILKENGKVGDAERMFIQA 380
+ G + G++ A F +A
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKA 195
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 30/205 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ +P + A E G A+ + + KP D + L
Sbjct: 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
D EG+ AY + + D + V L N L A + +EA L + E
Sbjct: 113 AAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE-------- 163
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
P LG ++ G + A+ +++ ++ PN
Sbjct: 164 -------------------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204
Query: 356 GYLAKGIILKENGKVGDAERMFIQA 380
Y+ G +LKE A +++A
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRA 229
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 30/184 (16%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258
A + GD+ A L +++P + V LL + ++ + + SA ++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318
E L N + EA++ + +
Sbjct: 66 -LAEAYSNLGNVYKERGQLQEAIEHYRHALR---------------------------LK 97
Query: 319 PIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERM 376
P ++ L A G + AV Y + P+ + G +LK G++ +A+
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157
Query: 377 FIQA 380
+++A
Sbjct: 158 YLKA 161
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 36/205 (17%), Positives = 58/205 (28%), Gaps = 30/205 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++ Y L + P A L GD AV + P V LG +
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
L E + A Y + + L A + A+ + +
Sbjct: 147 ALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIH---HFEKAV------ 196
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
+DP ++ LG + AVA Y R +S PN
Sbjct: 197 ------------------TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 356 GYLAKGIILKENGKVGDAERMFIQA 380
+ + E G + A + +A
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRA 263
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 32/206 (15%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++ Y L +P L LG A + + +P+ + LG V
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLASRERLSTGKS 296
+ + + + + + + L N L A+ D AV +L A
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRAL--------- 230
Query: 297 DDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDF 354
+ P + L Y + G + A+ Y R I P+
Sbjct: 231 -------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 355 RGYLAKGIILKENGKVGDAERMFIQA 380
Y LKE G V +AE + A
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTA 297
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 30/205 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ +E+ +++ P A L E + RAV+ P+ V L V Y
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
E + + YR + + + L NAL EA L
Sbjct: 249 EQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAED---CYNTAL------ 298
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
++ P + L L + G + +AV +Y + + +P
Sbjct: 299 ------------------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 356 GYLAKGIILKENGKVGDAERMFIQA 380
+ +L++ GK+ +A + +A
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 30/205 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
Y + + P + A G+ A+ + P+ D + LG V
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
E + ++ + AAY + +S + + V L D A+
Sbjct: 215 EARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTY------------- 260
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
++ ++ P + L A + G V++A Y+ + P
Sbjct: 261 RRAI--------------ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 356 GYLAKGIILKENGKVGDAERMFIQA 380
I +E G + +A R++ +A
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKA 331
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 36/190 (18%), Positives = 56/190 (29%), Gaps = 30/190 (15%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
Y LS+SP + A E G A+ + + +P PD + L E
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ Y + + + + L L N +EAV+ R+ L
Sbjct: 286 SVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLY---RKAL--------- 332
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
+V P L G++ +A+ Y I P Y
Sbjct: 333 ---------------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 359 AKGIILKENG 368
G LKE
Sbjct: 378 NMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 9e-08
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 30/151 (19%)
Query: 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291
L +Y+ D+E + D N VL L++ ++ D + F
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFS------- 56
Query: 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS 349
L++K +P+ E LG Y + G++ +A+ Y +
Sbjct: 57 ------TLAIK--------------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96
Query: 350 YPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
P+ GY+ L G + A + ++ A
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 9e-16
Identities = 29/225 (12%), Positives = 72/225 (32%), Gaps = 34/225 (15%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ ++ L + D+ E A + G+ +A+S L+ +K K + + F + + Y
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 238 ELKDYEGSAAAYR-----------VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286
+L D+E S + R + L L+ + +A
Sbjct: 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY-- 280
Query: 287 SRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQVELLLGKAYSDGGRVSDAVAVYDR 345
+ +TEP + ++ + + +S + +A+ V
Sbjct: 281 -ESVM-------------------KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
Query: 346 LISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
++ P++ + +A + + A+ +
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 20/227 (8%), Positives = 54/227 (23%), Gaps = 39/227 (17%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L ++ + P + A A +G A+ L + + K G +
Sbjct: 46 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105
Query: 238 ELKDYEG--------------SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283
+ + + + K + LR + A+ F
Sbjct: 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165
Query: 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVY 343
L +++ D ++ L + + G A++
Sbjct: 166 L----DKILEVCVWDAELR---------------------ELRAECFIKEGEPRKAISDL 200
Query: 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
++ + + + G + + + +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 247
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 17/217 (7%)
Query: 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236
Y + S D L G A+S P + + V
Sbjct: 15 TENLYFQ----SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVF 70
Query: 237 YELKDYEGSAAAYRVSTMVSKDINF-EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295
+ + + ++ ++F + LL K DEA +++
Sbjct: 71 LAMGKSKAALPDLT--KVIQLKMDFTAARLQRGHLLLKQGKLDEA----EDDFKKVLKSN 124
Query: 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
+ K+ +S + K D +Q G + A+A D+++ D
Sbjct: 125 PSENEEKEAQS------QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178
Query: 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392
+ + G+ A A + +A
Sbjct: 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY 215
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++ E L + P + AL+ A Y A+ + + +D + L + +
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 238 ELKDYE 243
LK +
Sbjct: 375 LLKQSQ 380
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 30/248 (12%), Positives = 78/248 (31%), Gaps = 34/248 (13%)
Query: 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSL 214
E + ++ L + + ++ L + D+ E A + G+ +A+S
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
Query: 215 LQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR-----------VSTMVSKDINFEV 263
L+ +K K + + F + + Y+L D+E S + R +
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236
Query: 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQV 322
L L+ + +A + +TEP + ++
Sbjct: 237 LIESAEELIRDGRYTDATS---KYESVM-------------------KTEPSVAEYTVRS 274
Query: 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382
+ + +S + +A+ + ++ P++ + +A + + A+
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334
Query: 383 FAPEKVKA 390
+
Sbjct: 335 HNENDQQI 342
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 21/228 (9%), Positives = 50/228 (21%), Gaps = 39/228 (17%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L ++ + P + A A +G A+ L + K G +
Sbjct: 23 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82
Query: 238 ELKDYEG--------------SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283
+ + + + K + LR A+ F
Sbjct: 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142
Query: 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVY 343
L E V ++ L + + G A++
Sbjct: 143 LDKILE-------------------------VCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
++ + + + G + + + +
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 13/191 (6%)
Query: 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250
D L G A+S P + + V + + +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 251 VSTMVSKDINF-EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309
+++ ++F + LL K DEA +++ + K+ S
Sbjct: 62 --KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF----KKVLKSNPSEQEEKEAES--- 112
Query: 310 KETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369
+ K D +Q DG + A+ D+++ D + + G+
Sbjct: 113 ---QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169
Query: 370 VGDAERMFIQA 380
A A
Sbjct: 170 PRKAISDLKAA 180
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++ E L + P + AL+ A Y A+ + + +D + L + +
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 238 ELKDYE 243
LK +
Sbjct: 352 LLKQSQ 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 178 LKKYEETLSISPKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
KYE + P + E ++ A+ + ++ + +P + + +
Sbjct: 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313
Query: 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276
E + Y+ + Y + +++ + ++ GL A K+
Sbjct: 314 EAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLKQ 355
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 30/231 (12%)
Query: 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK 222
+L++ R + Y +++ K S L A TL + +++ + +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335
Query: 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ 282
P + DV+ L +E + + + L K EA +
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARR 394
Query: 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE--LLLGKAYSDGGRVSDAV 340
+ K + +DP + +++ G A+
Sbjct: 395 YF------------------------SKSST---MDPQFGPAWIGFAHSFAIEGEHDQAI 427
Query: 341 AVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ Y + YL G+ + G + A + L
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 27/206 (13%), Positives = 55/206 (26%), Gaps = 32/206 (15%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L + L I P + +L E G+ + + DL P + +G
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLASRERLSTGKS 296
+ + + S+ + G ++ + D+A+ + A+R
Sbjct: 385 CVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAAR-------- 435
Query: 297 DDLSVKDGRSGDKKETEPQKVDPIQVE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354
+ L LG + G + A + + D
Sbjct: 436 --------------------LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 355 RGYLAKGIILKENGKVGDAERMFIQA 380
G++ + A F A
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNA 501
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 27/193 (13%), Positives = 49/193 (25%), Gaps = 31/193 (16%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
Y + + +LG+ A LQ DP + LG V +
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489
Query: 241 DYEGSAAAYR------VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294
D + + ++ T ++ L +A K D A+ L +
Sbjct: 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL----NQG--- 542
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354
+ V + Y A+ ++ PN+
Sbjct: 543 ---------------LLLSTNDAN---VHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584
Query: 355 RGYLAKGIILKEN 367
L+EN
Sbjct: 585 MASDLLKRALEEN 597
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 21/223 (9%), Positives = 54/223 (24%), Gaps = 25/223 (11%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ + P+ + + + + A + P +
Sbjct: 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
+++ + +AY + + + L + A ++L +S
Sbjct: 419 IEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYAL----FQY 473
Query: 298 DLSV---------KDGRSGD---------KKETEPQKVDPIQVELL--LGKAYSDGGRVS 337
D + + Q + LG AY
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533
Query: 338 DAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
A+ ++ + ND + A ++ G A ++
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 30/208 (14%), Positives = 63/208 (30%), Gaps = 33/208 (15%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL---GE 234
+ Y+E L + K A + D + L + + D R L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294
K +D A Y S + + ++L + L + + +
Sbjct: 280 NKTSHEDELRRAEDYLSSINGLEK-SSDLLLCKADTLFVRSRFIDVLAITTKIL------ 332
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPN 352
++DP +++ + + G + + + L+ +P
Sbjct: 333 ---------------------EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 353 DFRGYLAKGIILKENGKVGDAERMFIQA 380
+LA GI K+ +A R F ++
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKS 399
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 31/218 (14%), Positives = 62/218 (28%), Gaps = 28/218 (12%)
Query: 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236
+L ++ AL T D A LL + + L G+V
Sbjct: 162 KLYDWQG----------ALNLLGETNPFRKDEKNANKLLMQ-DGGIKLEASMCYLRGQVY 210
Query: 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296
L +++ + Y+ + MV +E L + L DE +L + +
Sbjct: 211 TNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLT--ADEEWDLVLKLNYSTYSKED 267
Query: 297 DDLSVKDGRSGDKKETEPQKVDPIQ--------------VELLLGKAYSDGGRVSDAVAV 342
K + ++ + + L R D +A+
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+++ P + Y L E+G+ +
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL 365
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 37/244 (15%), Positives = 56/244 (22%), Gaps = 35/244 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
E+ L I+ + A A V GDY RA LL L
Sbjct: 104 AFVGEKVLDITGNPNDAFWLAQV-YCCTGDYARAKCLLTK-EDLYNRSSACRYLAAFCLV 161
Query: 238 ELKDYE-------------GSAAAYRVSTMVSKDINFE----VLRGLTNALLAAKKPDEA 280
+L D++ M I E LRG D A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG--QVYTNLSNFDRA 219
Query: 281 VQFLLASRE----------RLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL---LG 327
+ + +L + + + K D + L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387
S + A Y I+ L K L + D + + P
Sbjct: 280 NKTSHEDELRRAED-YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338
Query: 388 VKAL 391
+
Sbjct: 339 LDVY 342
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 25/224 (11%), Positives = 60/224 (26%), Gaps = 28/224 (12%)
Query: 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQ 216
++ + ++EE +++ Y +L + D R
Sbjct: 238 DQLVSNHLLTADEEWDLVLK--LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295
Query: 217 DLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276
D+ + + + A + N +V +L + +
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGE 354
Query: 277 PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV 336
++ S+DL + P+K L +G Y ++
Sbjct: 355 KNKLYLI------------SNDLV----------DRHPEKA---VTWLAVGIYYLCVNKI 389
Query: 337 SDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
S+A + + + P ++ G+ A + A
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 31/264 (11%), Positives = 70/264 (26%), Gaps = 22/264 (8%)
Query: 143 ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202
L + ++P + + + + ++ +Q L + ++P+ A+
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--- 259
L R + +L P G K L+ + +
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC------QAHGLT 238
Query: 260 --NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG---RSGDKKE--- 311
+ A + + L + L+ + ++ G +
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHG-LTPQQVVAIASNSGGKQALETVQRLLP 297
Query: 312 --TEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367
+ + P QV + G V + V + P + +
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357
Query: 368 GKVGDAERMFIQARFFAPEKVKAL 391
V + QA PE+V A+
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAI 381
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 7e-12
Identities = 29/248 (11%), Positives = 69/248 (27%), Gaps = 12/248 (4%)
Query: 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVS 213
+P + + + + ++ +Q L + ++P+ A+ L R +
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Query: 214 LLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273
+L P K L+ + + ++ + + A
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE-QVVAIASNGGGKQA 186
Query: 274 AKKPDEAVQFLLASRERLSTGKSDDLSVKDG---RSGDKKETEPQ-----KVDPIQVELL 325
+ + L + L+ + ++ G + P + P QV +
Sbjct: 187 LETVQRLLPVLCQAHG-LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 245
Query: 326 --LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383
G V + V + P + + V + QA
Sbjct: 246 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL 305
Query: 384 APEKVKAL 391
P++V A+
Sbjct: 306 TPQQVVAI 313
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 25/221 (11%), Positives = 54/221 (24%), Gaps = 35/221 (15%)
Query: 178 LKKYEETLS-----ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232
+ + L+ ++P+ A+ L R + +L P
Sbjct: 53 VHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 112
Query: 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292
K L+ + + ++ + + A + + L
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPE-QVVAIASHDGGKQALETVQALLPVL-------- 163
Query: 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSY 350
+ + P QV + G V + V +
Sbjct: 164 -------------------CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 351 PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
P + G + V + QA P++V A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 245
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 24/213 (11%), Positives = 51/213 (23%), Gaps = 30/213 (14%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ ++P+ A+ + L R + +L P G K L+
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ + ++ + A + + L
Sbjct: 325 TVQRLLPVLCQAHGLTPQ-QVVAIASHDGGKQALETVQRLLPVL---------------- 367
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
+ + P QV + G V + V + P
Sbjct: 368 -----------CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 416
Query: 359 AKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ + V + QA P++V A+
Sbjct: 417 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 24/213 (11%), Positives = 49/213 (23%), Gaps = 30/213 (14%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ ++P+ A+ L R + +L P K L+
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ + ++ + A + + L
Sbjct: 291 TVQRLLPVLCQAHGLTPQ-QVVAIASNGGGKQALETVQRLLPVL---------------- 333
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
+ + P QV + V + V + P
Sbjct: 334 -----------CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 382
Query: 359 AKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ G + V + QA PE+V A+
Sbjct: 383 SNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 18/208 (8%), Positives = 41/208 (19%), Gaps = 30/208 (14%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ ++P+ A+ L R + +L P K L+
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ + ++ + + A + + L
Sbjct: 359 TVQRLLPVLCQAHGLTPE-QVVAIASNGGGKQALETVQRLLPVL---------------- 401
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
+ + P QV + V + V + P
Sbjct: 402 -----------CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 450
Query: 359 AKGIILKENGKVGDAERMFIQARFFAPE 386
+ G + A
Sbjct: 451 SNGGGRPALESIVAQLSRPDPALAALTN 478
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 22/214 (10%), Positives = 46/214 (21%), Gaps = 32/214 (14%)
Query: 181 YEETLSISPKDSTALE--GAAVTLAELGDYTRAVSLLQDLAKE-KPSDPDVFRLLGEVKY 237
L + + G + + + A L P K
Sbjct: 27 RGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNA---LTGAPLNLTPEQVVAIASHDGGKQ 83
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
L+ + + ++ + A + + L +
Sbjct: 84 ALETVQRLLPVLCQAHGLTPQ-QVVAIASHDGGKQALETVQRLLPVLCQA---------- 132
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
P++V I V + V + P
Sbjct: 133 ------------HGLTPEQVVAIA---SHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ G + V + QA P++V A+
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 211
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 21/189 (11%), Positives = 43/189 (22%), Gaps = 40/189 (21%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L + ++P+ A+ L R + +L P G K
Sbjct: 330 LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQ 389
Query: 238 ELKDYEGSAAAYRVSTMVSKDINF-----EVLRGLTNALLAAKKPDEAVQFLLASRERLS 292
L+ + + + A + + L
Sbjct: 390 ALETVQRLLPVLC------QAHGLTPEQVVAIASHDGGKQALETVQRLLPVL-------- 435
Query: 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSY 350
+ + P QV + G + ++ D +++
Sbjct: 436 -------------------CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAAL 476
Query: 351 PNDFRGYLA 359
ND LA
Sbjct: 477 TNDHLVALA 485
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 10/77 (12%), Positives = 21/77 (27%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+Q L + ++P+ A+ L R + +L P G
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453
Query: 234 EVKYELKDYEGSAAAYR 250
+ L+ +
Sbjct: 454 GGRPALESIVAQLSRPD 470
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 20/203 (9%), Positives = 56/203 (27%), Gaps = 11/203 (5%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
Y + +++ +L + A + + + P + +R LG +
Sbjct: 7 NTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA 66
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
E + + A + M+ + V L + + A+ L +
Sbjct: 67 ENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASL----RAWLLSQPQ 121
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
+ + + ++ + + + PND + +
Sbjct: 122 YEQLGSVNLQADVDIDDLN------VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175
Query: 358 LAKGIILKENGKVGDAERMFIQA 380
+ G++ + A +A
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRA 198
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 31/227 (13%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+E +P+ A +T AE A+ L P D V L
Sbjct: 44 FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103
Query: 241 DYEGSAAAYR--------------VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286
+ + A+ R V+ DI+ ++ A + E L A
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 287 SRERLSTGKSDDLSVKDGR------SGDKKETEPQ-----KVDPIQVELL--LGKAYSDG 333
+ E +D + S + ++ P +L LG ++G
Sbjct: 164 ALEM----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219
Query: 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
R +A+ Y+R + P R + + A + ++A
Sbjct: 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 24/197 (12%)
Query: 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK 222
+++ N + L ++P D+ V +Y A + L+ + +
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Query: 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI----NF-EVLRGLTNALLAAKKP 277
P D ++ LG + + AY + + + V+ + + +
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYN------RALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVS 337
D A + L+ + + + S + + + + R
Sbjct: 257 DLAAKQLVRAIYM----QVGGTTPTGEASREATRS---------MWDFFRMLLNVMNRPD 303
Query: 338 DAVAVYDRLISSYPNDF 354
Y + + + +F
Sbjct: 304 LVELTYAQNVEPFAKEF 320
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 4/128 (3%)
Query: 160 GVVNKELSEEEKNVLQTRLKK---YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQ 216
G +N +E + + ++ +I + A G A +
Sbjct: 1 GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60
Query: 217 DLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276
L + D L + + ++ +A Y V+ + K+ ++ + L K
Sbjct: 61 FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKA 119
Query: 277 PDEAVQFL 284
P +A +
Sbjct: 120 PLKAKECF 127
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-06
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 3/97 (3%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ + + G A + +A L +D G+ +
Sbjct: 56 EVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274
LK + + +V + N E L+ + L A
Sbjct: 116 RLKAPLKAKECFE---LVIQHSNDEKLKIKAQSYLDA 149
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 25/211 (11%), Positives = 63/211 (29%), Gaps = 36/211 (17%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE---KPSDPDVFRLLGE 234
++ + + + AV EL Y A ++ + + F G+
Sbjct: 23 IEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82
Query: 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294
+ + + Y+ + ++ + + A+Q++
Sbjct: 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYM---------- 131
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPN 352
+K+ ++ LG+AY A + + +++ PN
Sbjct: 132 --------------EKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 353 DFRGYLAKGII---LKENGKVGDAERMFIQA 380
+ GYL + + K G A+ + +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 26/196 (13%), Positives = 63/196 (32%), Gaps = 23/196 (11%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+++Y+ + G++ A+ ++ + +DP VF LG+ Y
Sbjct: 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEV---LRGLTNALL-AAKKPDEAVQFLLASRERLST 293
K+Y + +++ ++ N + R NA K A +
Sbjct: 154 YNKEYVKADSSFV--KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE-------- 203
Query: 294 GKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND 353
K ++ K + I+ + Y+ A A + +++ P +
Sbjct: 204 -KLIEV--------CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254
Query: 354 FRGYLAKGIILKENGK 369
+ + L+ +
Sbjct: 255 KKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 24/186 (12%), Positives = 56/186 (30%), Gaps = 31/186 (16%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--S 256
A L + +Y A+ + L +K + P ++ YEL Y+ + +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316
L+ + A+Q + +
Sbjct: 70 TKAKSADFEYYGKILMKKGQDSLAIQQY------------------------QAAVD--- 102
Query: 317 VDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAE 374
D ++++ +G + + G A+ ++ I D + + G N + A+
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162
Query: 375 RMFIQA 380
F++
Sbjct: 163 SSFVKV 168
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 18/158 (11%), Positives = 38/158 (24%), Gaps = 29/158 (18%)
Query: 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF-EVLRGLTNALLAAKKPDEAVQFL 284
DV + ++ +Y + + + + +K N + K D A + +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVF--NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE--LLLGKAYSDGGRVSDAVAV 342
++ + GK G+ S A+
Sbjct: 61 ETYFSKV------------------------NATKAKSADFEYYGKILMKKGQDSLAIQQ 96
Query: 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
Y + Y G G A + +
Sbjct: 97 YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 26/218 (11%), Positives = 63/218 (28%), Gaps = 28/218 (12%)
Query: 172 NVLQTRLKKYEE-------TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224
K E ++ A + A ++ +A++ A+
Sbjct: 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157
Query: 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+G + + + + + ++ + + V+ + + A ++
Sbjct: 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWF 216
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAV 342
L + E++ K + LL LG + ++A+
Sbjct: 217 LDALEKI------------------KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+ + + P + Y A G I G +A F A
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 33/201 (16%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
Y + + + + A P DP V +G V ++
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207
Query: 241 DYEGSAAAYR--------VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292
+++ + + + V+ D +L L + KK EA+ + +
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH----RQA- 262
Query: 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352
PQ +G +S G +AV + + +
Sbjct: 263 -----------------LVLIPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Query: 353 DFRGYLAKGIILKENGKVGDA 373
D G ++ +A
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 34/218 (15%), Positives = 64/218 (29%), Gaps = 29/218 (13%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
K + P ++ L TL EL L L PS+P + +G
Sbjct: 42 YKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101
Query: 238 EL-KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLASRERLSTGK 295
+ E + +T + K ++ + D+A+ + A++
Sbjct: 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQ------- 153
Query: 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
P+ L +G Y A + + +S P D
Sbjct: 154 ----------------LMKGCHLPM---LYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194
Query: 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393
G++ +NG+ AE+ F+ A +
Sbjct: 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-11
Identities = 29/216 (13%), Positives = 53/216 (24%), Gaps = 31/216 (14%)
Query: 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
E++ ++ + A D+ L + ++ P + E
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA-AKKPDEAVQFLLASRERLSTGKSD 297
L + N + L K + A ++L
Sbjct: 69 LNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYL------------- 114
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
K T ++ + G +++ A+A Y
Sbjct: 115 -----------SKATT---LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL 160
Query: 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
L G+ AER F QA APE +
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 9/72 (12%), Positives = 23/72 (31%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L + + L + P++++ + +G++ AV + D +LG
Sbjct: 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315
Query: 238 ELKDYEGSAAAY 249
+
Sbjct: 316 MYIGDSEAYIGA 327
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-11
Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 24/224 (10%)
Query: 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
K Y KD + + GD + ++ + P D + ++ LG + E
Sbjct: 52 KGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE 111
Query: 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL-------------- 284
++ + + A + + + N + L L + +A + L
Sbjct: 112 NENEQAAIVALQRCLELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170
Query: 285 ------LASRERLSTGKSDDLSVKDGRSGDKK--ETEPQKVDPIQVELLLGKAYSDGGRV 336
R+S D ++ + + +DP ++ LG + G
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP-DLQTGLGVLFHLSGEF 229
Query: 337 SDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+ A+ ++ ++ P D+ + G L + +A + +A
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 20/223 (8%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ E + P D+ A + +T AE + A+ LQ + +P++ L
Sbjct: 85 ILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144
Query: 238 ELKDYEGSAAAYR---------VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLAS 287
+ + A + + +K + + R ++ + + + + + +L A+
Sbjct: 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204
Query: 288 RERLSTGKSDD---LSVKDGRSGDKKETEPQ-----KVDPIQVELL--LGKAYSDGGRVS 337
+ D L V SG+ V P L LG ++G R
Sbjct: 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE 264
Query: 338 DAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+AV Y R + P R GI G +A F+ A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 14/66 (21%), Positives = 20/66 (30%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
G G + + + I P D + GI EN A + P
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 386 EKVKAL 391
+KAL
Sbjct: 131 NNLKAL 136
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 40/255 (15%), Positives = 74/255 (29%), Gaps = 33/255 (12%)
Query: 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISP----KDSTALEGAAVTLAELGDYTRAV 212
EE + E + Y++ +D + + GD AV
Sbjct: 25 EEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84
Query: 213 SLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272
L + ++ P + ++ LG + E + + +A R + D N L L +
Sbjct: 85 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 143
Query: 273 AAKKPDEAVQ-----------FLLASRERLSTGKSDDLSVKDGRSGDKKETE-------- 313
+A + + L G
Sbjct: 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKEL 203
Query: 314 --------PQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365
P +DP V+ LG ++ G AV + +S PND+ + G L
Sbjct: 204 FLAAVRLDPTSIDP-DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262
Query: 366 ENGKVGDAERMFIQA 380
+ +A + +A
Sbjct: 263 NGNQSEEAVAAYRRA 277
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 33/184 (17%)
Query: 181 YEETLSISPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
+ + + P D G V G+Y +AV +P+D ++ LG
Sbjct: 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263
Query: 239 LKDYEGSAAAYRVSTMVSK--DIN---FEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293
E + AAYR + ++ L + + EAV+ L +
Sbjct: 264 GNQSEEAVAAYR------RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA------ 311
Query: 294 GKSDDLSVKDGRSGDKKETEPQKVDPIQVELL---LGKAYSDGGRVSDAVAVYDRLISSY 350
L+++ +K P+ E + L A S G+ A R +S+
Sbjct: 312 -----LNMQ------RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360
Query: 351 PNDF 354
F
Sbjct: 361 LTMF 364
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 12/204 (5%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
K +++ + ++P+ L DY A Q P + + L + Y
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355
Query: 238 ELKDYEGSAAAYRVSTMVSKDINF-EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296
+ + S A + + K EV L D A++ ++ +
Sbjct: 356 KQGKFTESEAFFNET--KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL----EE 409
Query: 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRG 356
+ G K + + D + + A+ + + P +
Sbjct: 410 VQEKIHVGIGPLI-----GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464
Query: 357 YLAKGIILKENGKVGDAERMFIQA 380
+ + + K+ +A +F +
Sbjct: 465 KIGLAQLKLQMEKIDEAIELFEDS 488
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 29/229 (12%)
Query: 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK 222
+L + ++ + L + + AL + + A LLQ+
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ 282
P P+ + L + ++ + ++ + ++ + + A +
Sbjct: 274 P-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331
Query: 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQVELLLGKAYSDGGRVSDAVA 341
+ + P+ V P IQ L G+ +++ A
Sbjct: 332 DFQKA----------------------QSLNPENVYPYIQ----LACLLYKQGKFTESEA 365
Query: 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
++ +P IL + G A + + A+ + K
Sbjct: 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 26/227 (11%), Positives = 56/227 (24%), Gaps = 33/227 (14%)
Query: 169 EEKNVLQTRLKKYEETLSISPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226
+ T + L D L + Y +S + +
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243
Query: 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286
G + + + + S ++ L L + E +F
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQES--INLHPTPNSYIFLALTLADKENSQEFFKFF-- 299
Query: 287 SRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYD 344
+V ++P G+ Y +A +
Sbjct: 300 -----------QKAVD--------------LNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ S P + Y+ +L + GK ++E F + + P +
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-09
Identities = 22/225 (9%), Positives = 47/225 (20%), Gaps = 22/225 (9%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+K Y+ + + P + + GD + + + KP
Sbjct: 45 IKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104
Query: 238 ELKDYEGSAAAYRVST----MVSKDINFEVLRGL----------------TNALLAAKKP 277
L ++ + V + I + R L
Sbjct: 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164
Query: 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD--GGR 335
F L + S D + + L+
Sbjct: 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224
Query: 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
++ N GI + DA+ + ++
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 19/195 (9%), Positives = 52/195 (26%), Gaps = 6/195 (3%)
Query: 178 LKKYEETLSISPKDSTALEGA----AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+ +SP A ++ A+ Q + P++P + +
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS 66
Query: 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293
D E + + D + + L +A + +A+ L
Sbjct: 67 ACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFDLSVL-SLNGD 124
Query: 294 GKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND 353
+ R+ +K+ + + + E + ++ ++D + +
Sbjct: 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184
Query: 354 FRGYLAKGIILKENG 368
L +
Sbjct: 185 TSSNYDTAYALLSDA 199
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 27/193 (13%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+E++++ P + A+TLA+ + Q P P + G++ +
Sbjct: 263 QVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
L+DY+ + ++ + ++ + N L L K E+ F ++ +
Sbjct: 322 ILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK------- 373
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
P + V + +D G A+ YD + +
Sbjct: 374 ---------------FPTLPE---VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415
Query: 358 LAKGIILKENGKV 370
+ G ++ + +
Sbjct: 416 VGIGPLIGKATIL 428
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 23/225 (10%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVFRLLGE 234
++ + L I P S AL A LG++T A+ L L+ D +
Sbjct: 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNL 138
Query: 235 VKYELKDYEGSAAAY--RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF--------- 283
K +K + + R S ++ + + G+ ++ L + + +
Sbjct: 139 NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198
Query: 284 ---LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ-----VELLLGKAYSDGGR 335
L S ++DL K + DP++ G +
Sbjct: 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258
Query: 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+ DA + I+ +P Y+ + L + + + F +A
Sbjct: 259 LLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKA 302
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 33/227 (14%)
Query: 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQ 216
++A V E +++ L S + LE ++ + +Y A +LL
Sbjct: 140 KQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS--VNTSSNYDTAYALLS 197
Query: 217 DLAKEKPSDPDVFRLLGEVKYE--LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274
D + S D L+ Y +A V + ++ L
Sbjct: 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN-AALALCYTGIFHFLK 256
Query: 275 KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQVELLLGKAYSDG 333
+A L ++ + P + L +D
Sbjct: 257 NNLLDAQVLL------------------------QESIN---LHPTPNSYIFLALTLADK 289
Query: 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+ + + + P Y +G + +A+ F +A
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
G + ++A+ Y I PN+ Y G + +A
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 85
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 9e-11
Identities = 30/254 (11%), Positives = 62/254 (24%), Gaps = 30/254 (11%)
Query: 140 LVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAA 199
L A P + + + + + V +R L+++P A+
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNN 199
Query: 200 VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259
L R + +L P+ K L+ + + + D
Sbjct: 200 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD- 258
Query: 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319
+ A + + L + + P
Sbjct: 259 QVVAIASNIGGKQALETVQRLLPVL---------------------------CQAHGLTP 291
Query: 320 IQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377
QV + G V + V + P+ + + V +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 378 IQARFFAPEKVKAL 391
QA P++V A+
Sbjct: 352 CQAHGLTPDQVVAI 365
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 6e-10
Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 30/240 (12%)
Query: 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVS 213
+P + + + ++ +Q L + ++P A+ L R +
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP 247
Query: 214 LLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273
+L P K L+ + + ++ D + A
Sbjct: 248 VLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD-QVVAIASHGGGKQA 306
Query: 274 AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYS 331
+ + L + + P QV +
Sbjct: 307 LETVQRLLPVL---------------------------CQAHGLTPDQVVAIASHDGGKQ 339
Query: 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
V + V + P+ + G + V + QA P++V A+
Sbjct: 340 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 26/213 (12%), Positives = 51/213 (23%), Gaps = 31/213 (14%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ + P A+ L R + +L P G K L+
Sbjct: 249 LCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ + ++ D + A + + L
Sbjct: 309 TVQRLLPVLCQAHGLTPD-QVVAIASHDGGKQALETVQRLLPVL---------------- 351
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
+ + P QV + G V + V + P+
Sbjct: 352 -----------CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 400
Query: 359 AKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ G + V + QA P++V A+
Sbjct: 401 SNGGK-QALETVQRLLPVLCQAHGLTPDQVVAI 432
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 5e-08
Identities = 28/231 (12%), Positives = 55/231 (23%), Gaps = 18/231 (7%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+Q L + ++P A+ L R + +L P+
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470
Query: 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293
K L+ + + ++ D + A L +
Sbjct: 471 GGKQALETVQQLLPVLCQAHGLTPD-QVVAIASNIGGKQALATVQRL----LPVLCQAHG 525
Query: 294 GKSDDLSVKDGRSGDKKE-----------TEPQKVDPIQVELL--LGKAYSDGGRVSDAV 340
D + G K+ + + P QV + G V +
Sbjct: 526 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 585
Query: 341 AVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
V + + + V + QA P +V A+
Sbjct: 586 PVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 24/220 (10%), Positives = 51/220 (23%), Gaps = 30/220 (13%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+Q L + ++ A+ L R + +L P+
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640
Query: 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293
K L+ + + ++ D + A + + L
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPD-QVVAIASNGGGKQALETVQRLLPVL--------- 690
Query: 294 GKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYP 351
+ + QV + V + V + P
Sbjct: 691 ------------------CQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ + G + V + QA P +V A+
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 7e-07
Identities = 31/224 (13%), Positives = 58/224 (25%), Gaps = 19/224 (8%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ ++P A+ L R + +L P G K L+
Sbjct: 317 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 376
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ + + + A K+ E VQ LL + D +
Sbjct: 377 TVQRLLPVLC------QAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVV 430
Query: 301 VKDGRSGDKKE-----------TEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLI 347
G K+ + + P QV + V + V +
Sbjct: 431 AIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH 490
Query: 348 SSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
P+ + + V + QA P++V A+
Sbjct: 491 GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 9e-07
Identities = 26/220 (11%), Positives = 53/220 (24%), Gaps = 30/220 (13%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+Q L + ++P A+ L R + +L P G
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572
Query: 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293
K L+ + + +++ + A + + L
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQV-QVVAIASNIGGKQALETVQRLLPVL--------- 622
Query: 294 GKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYP 351
+ + P QV + V + V + P
Sbjct: 623 ------------------CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664
Query: 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ + G + V + QA E+V A+
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAI 704
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 30/262 (11%), Positives = 71/262 (27%), Gaps = 19/262 (7%)
Query: 143 ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202
L + ++P + + + + ++ +Q L + ++P A+
Sbjct: 313 LLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372
Query: 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262
L R + +L P G + L+ + + ++ D
Sbjct: 373 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPD-QVV 430
Query: 263 VLRGLTNALLAAKKPDEAVQFLLASRER---LSTGKSDDLSVKDG---RSGDKKETEPQ- 315
+ A + L + L+ + ++ DG ++ P
Sbjct: 431 AIASHDGGKQALETVQRL----LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 316 ------KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369
D + V + V + P+ + G +
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546
Query: 370 VGDAERMFIQARFFAPEKVKAL 391
V + QA P++V A+
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAI 568
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 6e-06
Identities = 25/256 (9%), Positives = 56/256 (21%), Gaps = 40/256 (15%)
Query: 143 ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202
L + ++ + + + ++ +Q L + ++P A+
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 643
Query: 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--- 259
L R + +L P G K L+ + +
Sbjct: 644 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC------QAHGLT 697
Query: 260 --NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKV 317
+ A + + L + +
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVL---------------------------CQAHGL 730
Query: 318 DPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAER 375
P QV + G V + V + P + + V
Sbjct: 731 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLP 790
Query: 376 MFIQARFFAPEKVKAL 391
+ Q +V A+
Sbjct: 791 VLCQDHGLTLAQVVAI 806
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 7e-05
Identities = 28/265 (10%), Positives = 65/265 (24%), Gaps = 18/265 (6%)
Query: 143 ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202
L + ++P + + + + ++ +Q L + ++P A+
Sbjct: 618 LLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 677
Query: 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262
L R + +L K L+ + + ++ D
Sbjct: 678 QALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD-QVV 736
Query: 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE------PQK 316
+ A + L + + G K+ E P
Sbjct: 737 AIASNGGGKQALETVQRL----LPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY-------PNDFRGYLAKGIILKENGK 369
+ L A + A+ RL+ + + +
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALET 852
Query: 370 VGDAERMFIQARFFAPEKVKALVDQ 394
V + Q P++V A+
Sbjct: 853 VQRLLPVLCQDHGLTPDQVVAIASN 877
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 9e-11
Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 30/173 (17%)
Query: 222 KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281
P+ D L +K E + E + YR + V + L + L K EA+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEAL 63
Query: 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDA 339
+E + ++ P + +G + V A
Sbjct: 64 MHY---KEAI------------------------RISPTFADAYSNMGNTLKEMQDVQGA 96
Query: 340 VAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392
+ Y R I P + I K++G + +A + A P+ A
Sbjct: 97 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-10
Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 32/209 (15%)
Query: 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244
P + +L A E G+ AV L + + P L V + +
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 245 SAAAYRVSTMVSKDINF-EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303
+ Y+ + F + + N L + A+Q + +
Sbjct: 62 ALMHYK--EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ-------------- 105
Query: 304 GRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361
++P + L + D G + +A+A Y + P+ Y
Sbjct: 106 -------------INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Query: 362 IILKENGKVGDAERMFIQARFFAPEKVKA 390
L+ D + + ++++
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVADQLEK 181
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229
E +Q L+ Y + I+P + A A + G+ A++ + K KP PD +
Sbjct: 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
Query: 230 RLLGEVKYELKDYEGSAAAYR 250
L + D+ +
Sbjct: 149 CNLAHCLQIVCDWTDYDERMK 169
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 2/122 (1%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+S L + G + A + Q L D F LG + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
YE + +Y ++ + L D A ++R L+ + +
Sbjct: 67 LYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARA-LAAAQPAHEA 124
Query: 301 VK 302
+
Sbjct: 125 LA 126
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
K ++ + D+ G LG Y +A+ A ++P E
Sbjct: 38 QKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97
Query: 238 ELKDYEGSAAAY-RVSTMVSKDINFEVLRGLTNALLAA--KKPDE 279
+L D +G+ + + + + E L A+L A + D
Sbjct: 98 QLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 8e-05
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 316 KVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDA 373
+ +E L LG G+ DA ++ L D R +L G + G A
Sbjct: 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQA 71
Query: 374 ERMFIQARFFAPEKVKAL 391
+ + + +
Sbjct: 72 LQSYSYGALMDINEPRFP 89
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 14/62 (22%), Positives = 19/62 (30%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
LG G A+ Y N+ R + G + AE F AR A
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 386 EK 387
+
Sbjct: 118 AQ 119
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-10
Identities = 25/205 (12%), Positives = 67/205 (32%), Gaps = 30/205 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ + + + + +D+ A L+ + + RA++ + S + G V
Sbjct: 43 AEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
+ Y+ + + + + N ++ L L+ ++P A+ +L
Sbjct: 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYL------------- 148
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
++ E ++ E G ++ G + +A++ + + P
Sbjct: 149 -----------QRAVE---LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 356 GYLAKGIILKENGKVGDAERMFIQA 380
+ G+ A M +A
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 7e-08
Identities = 32/219 (14%), Positives = 58/219 (26%), Gaps = 46/219 (21%)
Query: 174 LQTRLKKYEETLSISPKDSTA--LEGAA--VTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229
+ + + + + P+ S + G +E GDY +A +E D +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQ-F 283
+ + + E + A Y K + G N + + EA F
Sbjct: 61 INFANLLSSVNELERALAFYD------KALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVA 341
A + +L LG + A+
Sbjct: 115 EKAL----------------------------RAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
R + ND G+ L G + +A F
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 38/207 (18%)
Query: 172 NVLQTRLKKYEE-------TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224
N+L + + E L + +TA GA Y A + + +
Sbjct: 65 NLLS-SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123
Query: 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+ D+F +LG V +L+ + + + + ++++ + E L DEA+
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQF 182
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAV 342
TE DP + G Y+ A+ +
Sbjct: 183 ------------------------AAVTE---QDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 343 YDRLISSYPNDFRGYLAKGIILKENGK 369
D+ I P+ AK ++ +
Sbjct: 216 LDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 26/214 (12%)
Query: 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
+ +T + A + + G+ +A L+ + PS D L V
Sbjct: 24 QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT 83
Query: 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV-QFLLASRERLSTGKSD 297
+ + + YR + N VL L K+ +EA + L AS++ L
Sbjct: 84 EMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL------ 136
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
+ +V LG + + A +++ + N
Sbjct: 137 ------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Query: 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
L +L + + A + + + ++L
Sbjct: 179 LEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 32/205 (15%), Positives = 51/205 (24%), Gaps = 26/205 (12%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ L I P + A AV + A + + V G Y
Sbjct: 57 KVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116
Query: 238 ELKDYEGSAAAYRVSTMVSKDINF-EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296
E K YE + ++ + V L L KKP +A ++ S
Sbjct: 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS--------- 167
Query: 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRG 356
L + + L + A YD + R
Sbjct: 168 --LRLN-----------RNQPSVA---LEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211
Query: 357 YLAKGIILKENGKVGDAERMFIQAR 381
L + K A +Q +
Sbjct: 212 LLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 1e-09
Identities = 46/227 (20%), Positives = 81/227 (35%), Gaps = 34/227 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTR-AVSLLQDLAKEKPSDPDVFRLLGEVK 236
L++ EE L + ++ AL L DY+ A LL K +P + + LGEV
Sbjct: 88 LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147
Query: 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL--LAAKKPDEAVQFLLASRERLSTG 294
++ D + + ++ N L+ L+ L L DE + ++ S +
Sbjct: 148 WKKGDVTSAHTCFS--GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK-- 203
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG--------GRVSDAVAVYD-- 344
+ + V DGRS +LG AY A++ Y
Sbjct: 204 LAVQMDVLDGRS----------------WYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247
Query: 345 -RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
++ ++ +L + + K G+A F QA P +
Sbjct: 248 EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-09
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
IS L A + G Y A + Q L D F LG + +
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289
Y+ + +Y ++ LL + EA L ++E
Sbjct: 70 QYDLAIHSYSYGAVM-DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 9e-05
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265
G + L + + L +Y+ YE + ++ ++ +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFL 59
Query: 266 GLTNALLAAKKPDEAVQ 282
GL A + D A+
Sbjct: 60 GLGACRQAMGQYDLAIH 76
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 7e-04
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 315 QKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGD 372
++ +E L L G DA V+ L D R +L G + G+
Sbjct: 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 73
Query: 373 AERMFIQA 380
A +
Sbjct: 74 AIHSYSYG 81
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L + + P+D A A +GD T +Q P P+ LG V++
Sbjct: 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW 68
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+ + +A + ++ + + + + L +AL A + + A
Sbjct: 69 TQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAY 114
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 30/188 (15%)
Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265
D R + L+ + +P D + +L + + + D A + + + E +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVA 61
Query: 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL 325
L ++ EA L + + P +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASD---------------------------AAPEHPGIA 94
Query: 326 --LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383
LG A D G+ A A Y R P + + + + Q R
Sbjct: 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
Query: 384 APEKVKAL 391
+ V A+
Sbjct: 155 VAQGVGAV 162
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 16/70 (22%), Positives = 25/70 (35%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ L++ P A+ + A LLQ + P P + LG +
Sbjct: 46 VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105
Query: 241 DYEGSAAAYR 250
E +AAAY
Sbjct: 106 QAEAAAAAYT 115
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 21/154 (13%), Positives = 38/154 (24%), Gaps = 30/154 (19%)
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
D R + +F L +A L +
Sbjct: 4 DGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------- 52
Query: 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358
P E + LG+ R ++A + + + P L
Sbjct: 53 -----------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL 95
Query: 359 AKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392
G L++ G+ A + +A PE+
Sbjct: 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 22/209 (10%), Positives = 62/209 (29%), Gaps = 17/209 (8%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+++ L + +S+ L +Y +A + P + + L + Y
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
++ + + + EV L D+A++ + E ++
Sbjct: 350 RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIEL----ENK 404
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
+ G + P+ + L +A + ++ P +
Sbjct: 405 LDGIYVGIA------------PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452
Query: 358 LAKGIILKENGKVGDAERMFIQARFFAPE 386
+ + + + +A +F ++ A
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEESADLART 481
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 29/218 (13%)
Query: 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223
E + + + +L K E + K + +LE + D A + A E
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI-KKAIELF 267
Query: 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283
+ + + + + D + + + + N V + D+A +
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKD 326
Query: 284 LLASRERLSTGKSDDLSVKDGRSGDK-KETEPQKVDPIQVELLLGKAYSDGGRVSDAVAV 342
DK KE +P+ + P + L + D +
Sbjct: 327 F-----------------------DKAKELDPENIFP---YIQLACLAYRENKFDDCETL 360
Query: 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+ +P IL + A + + A
Sbjct: 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 23/201 (11%), Positives = 61/201 (30%), Gaps = 31/201 (15%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ ++ + + P + A+ +A+ D T + K ++ V+ G++ +
Sbjct: 257 HEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
L++Y+ + + + + + N L K D+
Sbjct: 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLF------------- 361
Query: 298 DLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
+E ++ P +V + +D A+ YD I
Sbjct: 362 --------------SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407
Query: 356 GYLAKGIILKENGKVGDAERM 376
Y+ ++ + + +
Sbjct: 408 IYVGIAPLVGKATLLTRNPTV 428
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 38/297 (12%), Positives = 76/297 (25%), Gaps = 45/297 (15%)
Query: 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSP 155
K +E P E + + V F G F P + +
Sbjct: 121 QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF-FGIFKPELTFAN 179
Query: 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL 215
+E+ +KEL N+ + + Y++ K + +
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTK-------------AARLFEEQLDKN 226
Query: 216 QDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275
+ K K G K+ D G+ + + + + +
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA--IELFPRVNSYIYMALIMADRN 284
Query: 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDG 333
E + D ++ K+D + G+
Sbjct: 285 DSTEYYNYF-------------DKAL--------------KLDSNNSSVYYHRGQMNFIL 317
Query: 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390
A +D+ P + Y+ + K D E +F +A+ PE +
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-05
Identities = 22/206 (10%), Positives = 50/206 (24%), Gaps = 4/206 (1%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE---KPSDPDVFRLLGE 234
++ + L + P S L A LG + A+ L L+ + +
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294
K + + +T +++ + + + F + L+
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354
D+ + D + K P + + + +
Sbjct: 179 NYDESNEADKELMNGLS-NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237
Query: 355 RGYLAKGIILKENGKVGDAERMFIQA 380
GI A +A
Sbjct: 238 ISLEHTGIFKFLKNDPLGAHEDIKKA 263
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAE---------LGDYTRAVSLLQDLAKEKPSDPDV 228
LK+Y+ + + K G A + + + ++ A +LL+ +K P
Sbjct: 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451
Query: 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ 282
L ++K + +D + + + S +++ E L+ + A K + ++
Sbjct: 452 KIGLAQMKLQQEDIDEAITLFEESADLART-MEEKLQAI--TFAEAAKVQQRIR 502
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 26/221 (11%), Positives = 59/221 (26%), Gaps = 35/221 (15%)
Query: 178 LKKYEETLSISPKDST----ALEGAAVTLAELGDYTRAVSLLQDLAKEK--PSDPDVFRL 231
+KY L S A+ A LA V+ L ++ +
Sbjct: 47 QRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM 106
Query: 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291
+ + ++ + + + + E + LL + D A + L +++
Sbjct: 107 AASIYFYDQNPDAALRTLH------QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159
Query: 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351
D Q+ + G ++ DA ++ +
Sbjct: 160 ---DEDAT-------------------LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS 197
Query: 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392
+ G+ AE + +A + L+
Sbjct: 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 7e-06
Identities = 12/73 (16%), Positives = 20/73 (27%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++E L G A G + A +LQ+ + P+ L +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 238 ELKDYEGSAAAYR 250
L Y
Sbjct: 246 HLGKPPEVTNRYL 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++ Y + + D T L A E G+Y A+S L D ++ ++++ +
Sbjct: 25 IEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
+ + + + L + ++ ++
Sbjct: 84 RIGNAYHKLGDL--KKTIEYYQKSLTEHRTADILTKLRNAEKELK--------------- 126
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
+ + + L GK Y +AV Y +I P D RGY
Sbjct: 127 ----------KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY 176
Query: 358 LAKGIILKENGKVGDAERMFIQA 380
+ L + +A +A
Sbjct: 177 SNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 37/197 (18%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L ++T+ K T A L +L + + + + A P + RL G+ +
Sbjct: 92 LGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVL---RGLTNALLAAKKPDEAVQFLLASRERLSTG 294
D+ + AY + M+ + R AL EA+
Sbjct: 151 TKSDWPNAVKAY--TEMIKRAPEDARGYSNRA--AALAKLMSFPEAI------------- 193
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPN 352
+ ++ + DP V A + A+ D +
Sbjct: 194 ADCNKAI--------------EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Query: 353 DFRGYLAKGIILKENGK 369
G A+ I
Sbjct: 240 VNNGSSAREIDQLYYKA 256
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLA 219
+ +L EK LKK E ++P+ + D+ AV ++
Sbjct: 112 ADILTKLRNAEKE-----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166
Query: 220 KEKPSDPDVFRLLGEVKYELKDYEGSAAAY 249
K P D + +L + + A
Sbjct: 167 KRAPEDARGYSNRAAALAKLMSFPEAIADC 196
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 54/403 (13%), Positives = 125/403 (31%), Gaps = 120/403 (29%)
Query: 82 INFEERLAAVRR--SALEQKKAEEIKEF----GPIDYD---APIETEKKTIGLGTKIGVG 132
I ++ ++ R L K+ E +++F I+Y +PI+TE++ + T++ +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS 192
++ +VS + L+ L + + P +
Sbjct: 115 QRDRLYNDN----QVFAKYNVS------------RLQPYLKLRQALLE------LRPAKN 152
Query: 193 TALEG---------AAVTLAE---------------LGDYTRAVSLLQDLAK-------- 220
++G A L + ++L+ L K
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 221 --EKPSDPDVFRL-LGEVKYELKDYEGSAAAYRVSTMVSKDIN-------FE----VL-- 264
+ +L + ++ EL+ + Y +V ++ F +L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 265 ---RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK--DGRSGDKKETEPQKVDP 319
+ +T+ L AA ++ + L+ + L +K D R D E +P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPR-EVLTTNP 327
Query: 320 IQVELLLGKAYSDGGRVSDAVAVYD-----------RLISS-----YPNDFRGYLAKGII 363
++ ++ + D +A +D +I S P ++R + +
Sbjct: 328 RRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 364 LKENGKVGDA--ERMFIQARFFAPEKV------KALVDQYSKR 398
+ + ++ V +LV++ K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 6e-06
Identities = 55/412 (13%), Positives = 123/412 (29%), Gaps = 138/412 (33%)
Query: 15 AFRIQC---------------SDSKPRRGFGNKTDKT-NKEEKKGVMSQPKRKSLSKQSG 58
AF + C S + + T +E K ++ K L +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----KYLDCRPQ 316
Query: 59 SLPTQA----PFLSS--GYNSKSNNSSSDINFE----ERLAAVRRSALEQKKAEEIKEFG 108
LP + P S + + ++ D N++ ++L + S+L + E ++
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKM- 374
Query: 109 PIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168
+D + +F P + PT ++ ++ +
Sbjct: 375 ---FD--------------------RLSVF----------PPSAHIPTILLSLIWFDVIK 401
Query: 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV-SLLQDLAKEKPSDPD 227
+ V+ +L KY S+ K + T ++ S+ +L + ++
Sbjct: 402 SDVMVVVNKLHKY----SLVEKQPK-------------ESTISIPSIYLELKVKLENEYA 444
Query: 228 VFRLLGEVKYEL-KDYEGSAAAYRVSTMVSKDINFEVLRG---------LTNALLAAKKP 277
+ R + + Y + K ++ S D+ L L N ++
Sbjct: 445 LHRSIVD-HYNIPKTFD------------SDDLIPPYLDQYFYSHIGHHLKNIEH-PERM 490
Query: 278 DEAVQFLLASRERLSTGKSDD--LSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR 335
L D L K ++ +Q +L K Y
Sbjct: 491 TLFRMVFL-----------DFRFLEQKIRHDSTAWNASGSILNTLQ-QL---KFYKP--Y 533
Query: 336 VSDAVAVYDRLISSYPN------------DFRGYLAKGIILKENGKVGDAER 375
+ D Y+RL+++ + + L ++ ++ +A +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 14/77 (18%), Positives = 28/77 (36%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+Q ++ E L+ + T AE + A+ L+ P+ ++ LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 234 EVKYELKDYEGSAAAYR 250
+ D G+ A+
Sbjct: 61 KTLQGQGDRAGARQAWE 77
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
LGK Y++ + A+ + P + G L+ G A + + A
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Query: 386 EK 387
+
Sbjct: 85 SR 86
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-08
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 27/154 (17%)
Query: 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF 261
A + + LQD + P + + + LLGE DY S AYR + + + N
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NA 78
Query: 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321
E+ L L Q + L +D +
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKAL------------------------ALDSNE 114
Query: 322 VE--LLLGKAYSDGGRVSDAVAVYDRLISSYPND 353
+ +LL + A+ ++ +++
Sbjct: 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYT---RAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
Y + L + +++ A L + +++ ++ LL +
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 238 ELKDYEGSAAAY-RVSTMVSKDIN-FEVLRGLTNALLAAKKPDEA 280
+Y + + +V + S IN +++ + A L ++ D
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLE 171
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 13/112 (11%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
+ +L+ ++ + +P++S DY+ ++ + + + + +++ L
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 234 EVKYELKDYEGSAAAYR-VSTMVSKD-INFEVLRGLTNALLAAKKPDEAVQF 283
V Y +A + ++ D L L + +A++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL 137
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG---EVKY 237
++ L++ + TAL A +Y +A+ L Q + + +L+ K
Sbjct: 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKL 163
Query: 238 ELKDYEGSAAAY 249
+ + +
Sbjct: 164 LQRRSDLEHHHH 175
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 28/205 (13%), Positives = 60/205 (29%), Gaps = 14/205 (6%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ + L+I P + L + G++ A + + P+ G Y
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300
+ + + + L A +A + L E+ +
Sbjct: 126 RDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQK-LDEKQAKEVLKQHFEKSDKEQWGWNI 183
Query: 301 V-----KDGRSGDKKE-----TEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLIS 348
V + T+ + E LGK Y G + A A++ ++
Sbjct: 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243
Query: 349 SYPNDFRGYLAKGIILKENGKVGDA 373
+ ++F + + L G+ D
Sbjct: 244 NNVHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 40/234 (17%)
Query: 174 LQTRLKKYEETLS----ISPKDSTALEGAAVTLAELG-------DYTRAVSLLQDLAKEK 222
+ L + E+ L+ + + L V LG D+++A+++ +
Sbjct: 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-------R 73
Query: 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ 282
P P+VF LG + +++ + A+ S + AL + A
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFD-SVLELDPTYNYAHLNRGIALYYGGRDKLAQD 132
Query: 283 FLLASRERLSTGKSDD--------LSVKDGRSGDKKETEPQ---KVDPIQ-----VELLL 326
LLA + +D L+ + KE Q K D Q VE L
Sbjct: 133 DLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188
Query: 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
G S+ + A S + G G + A +F A
Sbjct: 189 GN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 33/213 (15%), Positives = 53/213 (24%), Gaps = 33/213 (15%)
Query: 188 SPKDSTALEGAAVTLAELGDYTRAVS----LLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243
S E AV L ++ +L A + G + L
Sbjct: 1 SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60
Query: 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLASRERLSTGKSDDLSVK 302
+ + + + D EV L L A D A + F L +
Sbjct: 61 LARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSV------------LELD 107
Query: 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362
P L G A GGR A PND L +
Sbjct: 108 -----------PTYNY---AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153
Query: 363 ILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395
++ + A+ + Q + ++
Sbjct: 154 AEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVE 185
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 17/107 (15%), Positives = 33/107 (30%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
Y+E L +P + LE A G A+ + + + + + + LG Y
Sbjct: 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+ E + S + L + ++A L
Sbjct: 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319
+ + + +A + A + +AV + + D + + DK K+
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYF----RQTIALNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379
L AY A Y L+ PN+ A + G+ DA RM+ +
Sbjct: 59 -----ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
Query: 380 ARFFAPEKVKALV 392
+ + A +
Sbjct: 114 ILQLEADNLAANI 126
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 20/201 (9%), Positives = 50/201 (24%), Gaps = 47/201 (23%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL----------------LGEVKYELKDY 242
E G +AVS + +++ L + ++Y
Sbjct: 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70
Query: 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK 302
+ + Y+ + + N + L + + +A++
Sbjct: 71 DKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMY------------------ 111
Query: 303 DGRSGDKK--ETEPQKVDPIQVELLLGKAYSD-GGRVSDAVAVYDRLISSYPNDFRGYLA 359
+K + E + + LG Y + + + +SS
Sbjct: 112 ------EKILQLEADNLAAN---IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162
Query: 360 KGIILKENGKVGDAERMFIQA 380
G+ + A +
Sbjct: 163 DGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 33/194 (17%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
+ S S A+ + +Y +A ++L ++ P++ D E++
Sbjct: 43 WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102
Query: 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA-AKKPDEAVQFLLASRERLSTGKSDDL 299
+ + Y + D N L N A++ + ++
Sbjct: 103 QEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS---------- 151
Query: 300 SVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357
G + R A ++I +P+
Sbjct: 152 -----------------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194
Query: 358 -LAK-GIILKENGK 369
L K I KE +
Sbjct: 195 TLDKILRIEKEVNR 208
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-08
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 27/189 (14%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258
A+ DY +A + ++D K P + + + E+ LK + + ++R + + D
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 259 INFEVLRGLTNALLA-AKKPDEAV-QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316
+ E+ L +P E++ F A + P
Sbjct: 75 -SAEINNNYGWFLCGRLNRPAESMAYFDKALAD------------------------PTY 109
Query: 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERM 376
P L G + G+ A A R +++ P + G++GDA+
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYY 169
Query: 377 FIQARFFAP 385
F + +
Sbjct: 170 FKKYQSRVE 178
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 30/206 (14%), Positives = 53/206 (25%), Gaps = 29/206 (14%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV-K 236
E+ L PK+ A A L +A + KP ++ G
Sbjct: 28 TASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87
Query: 237 YELKDYEGSAAAY-RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295
L S A + + + + + A +L S
Sbjct: 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS-------- 139
Query: 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
L+ + PQ L + G++ DA + + S
Sbjct: 140 ---LAAQ-----------PQFPPAF---KELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182
Query: 356 GYLAKGIILKENGKVGDAERMFIQAR 381
L G K +G+A+ +
Sbjct: 183 DDLLLGW--KIAKALGNAQAAYEYEA 206
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 14/66 (21%), Positives = 23/66 (34%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
L Y G A A + + S P + +L + I + A+ F QA P
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Query: 386 EKVKAL 391
+ +
Sbjct: 74 DSAEIN 79
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 12/206 (5%)
Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTR---AVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+E+ L PK+ G A+ L ++ A+ L+ + P + + LL +
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 238 ELKDYEG---SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294
++++ + +VLR +PD+A++ L + E
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IP 278
Query: 295 KSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354
+ L + G K + E + + AVA + + N F
Sbjct: 279 NNAYLHCQIGCCYRAKVFQVMN----LRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334
Query: 355 RGYLAKGIILKENGKVGDAERMFIQA 380
R + + +AE F +
Sbjct: 335 RVCSILASLHALADQYEEAEYYFQKE 360
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 28/233 (12%), Positives = 71/233 (30%), Gaps = 39/233 (16%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG---- 233
K EE L +P + L AA + +A+ LL+ + P++ + +G
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292
Query: 234 EVKYELKDYEGSAAAYRVSTM-------------VSKDINF-EVLRGLTNALLAAKKPDE 279
+++ + + + + + N V L + A + +E
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
Query: 280 AVQFLLASRERLSTGKSDD-----------LSVKDGRSGDKKETEPQKVDPIQVELLLGK 328
A + ++ S + + + DK + + + +
Sbjct: 353 AEYYF---QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG------VKINQ 403
Query: 329 AYSDGGRVSDAV-AVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
+ ++ D + + +S D + + N K+ A+ +
Sbjct: 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 37/200 (18%)
Query: 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238
+K+ I + EG RA + ++KP +P+ L Y
Sbjct: 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR 184
Query: 239 LKD---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK----PDEAVQFLLASRERL 291
L + + + R + ++ D N + L L ++ E + + + E
Sbjct: 185 LDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-- 241
Query: 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS 349
P ++L K Y A+ + + +
Sbjct: 242 -------------------------KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 350 YPNDFRGYLAKGIILKENGK 369
PN+ + G +
Sbjct: 277 IPNNAYLHCQIGCCYRAKVF 296
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-07
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
G + +++A ++ + P + + G+ EN K G A AR P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 386 EKVKAL 391
+ +
Sbjct: 83 KDIAVH 88
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258
+++ +L + A + + +++P + +R LG + E + + A + M+
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83
Query: 259 INFEVLRGLTNALLAAKKPDEAVQFL 284
+ V L + + A+ L
Sbjct: 84 -DIAVHAALAVSHTNEHNANAALASL 108
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 316 KVDPIQVE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDA 373
+ +P + E LG ++ + A+ + P D + A + A
Sbjct: 45 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104
Query: 374 ERMFIQA 380
Sbjct: 105 LASLRAW 111
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 1e-06
Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 30/183 (16%)
Query: 200 VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259
++ A+ G Y++AV LL+ + D DV LG + + S + D
Sbjct: 16 ISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD- 74
Query: 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319
N +V L + +K D AV L K E +P
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLL------------------------IKVAE---ANP 107
Query: 320 IQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377
I + LG A + GR +A+ + + PN+ + + A ++ G+ +A F
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167
Query: 378 IQA 380
+A
Sbjct: 168 KKA 170
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 2e-05
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
G +++ GR S AV + +++ + D L GI + G V + ++
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 7e-04
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 33/190 (17%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ E+ D + + G R LL+ + P + V +LG
Sbjct: 28 VMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD 297
+++ Y+ + + NF V L AL + DEA+ S +
Sbjct: 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAID---------SFKIA- 136
Query: 298 DLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
L ++ P + ++ + +Y GR +A+ + +
Sbjct: 137 -LGLR----------------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA-- 177
Query: 356 GYLAKGIILK 365
+ ++ +
Sbjct: 178 -SVELALVPR 186
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
L + + S A+A+++ L+ + P+ Y G + + + DA + Q A
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 386 EKVKA 390
E+
Sbjct: 73 EEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-05
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247
P+D A + + +RA++L ++L + P + LG++ L + +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 248 AYRVSTMVSKD-INFEVLRGLTNALLAAKKPDEA 280
Y V+++ + L L +A L A+ +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 1/113 (0%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L + A L E + A LL + E D L+ +++
Sbjct: 26 LNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290
+ E + + NFE+ L + +EA++ L +
Sbjct: 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG GR A+ +++R + P D + G V A
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 56/220 (25%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGD-------YTRAVSLLQDLAKEKPSDPDVFR 230
L +E L +P+D AL A T +LG V+ P +
Sbjct: 25 LTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------TPRYLGGYM 77
Query: 231 LLGEVKYEL-----------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE 279
+L E L E + + + + V+ + + D+
Sbjct: 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDK 136
Query: 280 AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVS 337
A S ++ L+++D E+ L + Y GR+
Sbjct: 137 AEA---------SLKQA--LALEDT-----------------PEIRSALAELYLSMGRLD 168
Query: 338 DAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377
+A+A Y + + P D + L GK +A R
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 20/92 (21%)
Query: 172 NVLQTRLKKYEE-------TLSISPKDSTALEGAAVTLAELG-------DYTRAVSLLQD 217
+ Y E + + P++S L L Y +++++D
Sbjct: 14 VLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72
Query: 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY 249
+ DV+ + ++ E A
Sbjct: 73 -----EYNKDVWAAKADALRYIEGKEVEAEIA 99
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG AY G +A+ Y + + PN+ + G + G +A + +A
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.4 bits (96), Expect = 2e-04
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG AY G +A+ Y + + P + G + G +A + +A
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 38.5 bits (91), Expect = 6e-04
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG AY G +A+ Y + + P + G + G +A + +A
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 38.5 bits (91), Expect = 8e-04
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG AY G +A+ Y + + P + G + G +A + +A
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 181 YEETLSI---SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
YE+ ++ + G T LG+Y +A ++L + K+ P+ + V Y
Sbjct: 13 YEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72
Query: 238 ELKDYEGSAAAYR 250
L YE
Sbjct: 73 NLGRYEQGVELLL 85
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230
+ P A+ L LG Y + V LL + E D +
Sbjct: 47 EAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 7e-04
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG + G A AV + +PN + ++L G+ + ++
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG AY G +A+ Y + + PN+ + G + G +A + +A
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 3e-04
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380
LG AY G +A+ Y + + PN+ + G + G +A + +A
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 4/138 (2%)
Query: 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233
LQ L+ E + SPKD++ L GD+ RA L K P L
Sbjct: 13 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 72
Query: 234 E-VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE--R 290
VK + + A + + + L N + ++ ++ + L E +
Sbjct: 73 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSF-NLSMVSQDYEQVSELALQIEELRQ 131
Query: 291 LSTGKSDDLSVKDGRSGD 308
++D S D R D
Sbjct: 132 EKGFLANDTSFSDVRDID 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.98 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.95 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.94 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.94 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.92 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.92 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.92 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.88 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.88 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.87 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.84 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.83 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.82 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.81 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.8 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.76 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.76 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.72 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.7 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.63 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.55 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.55 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.54 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.53 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.53 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.46 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.46 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.46 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.42 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.29 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.23 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.21 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.1 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.07 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.87 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.82 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.8 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.74 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.69 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.56 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.52 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.23 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.17 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.07 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.03 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.68 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.62 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.51 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.48 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.46 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.05 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.7 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.56 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.23 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.1 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.02 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.79 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.74 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.39 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.31 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.31 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.82 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.63 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.61 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.04 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.92 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.33 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.84 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.77 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.69 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.6 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.27 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 81.03 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=253.73 Aligned_cols=291 Identities=18% Similarity=0.119 Sum_probs=197.4
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.....+++++|+..+.+++...|+++..+.. +|.+ .| ++.|..++..++... |.++.+|..+|.++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~~~~~a~~~~~~a~~~~---------p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAIKQN---------PLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC---------CCchHHHHHHHHHH
Confidence 3445667777777777777777777766655 5555 45 777777777777776 77777777777777
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+..
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCch
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQ 321 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~ 321 (398)
|++++..+|+ +..+|..+|.++...|++++|+..|++++...+.... +.+....+++.. ..+.+++..+|.+
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 7777777777 7777777777777777777777777777665544332 222222333332 2233344444543
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 322 --VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 322 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++.++
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 3334667777777777777777777777777666777777777777777777777777777777666666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=252.09 Aligned_cols=288 Identities=15% Similarity=0.130 Sum_probs=204.2
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..+++++|+..|++++...|++...+.. +|.+ .| ++.|+..|.+++... |+...++..+|.++...
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYIN-LAAALVAAGDMEGAVQAYVSALQYN---------PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHSCSSHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHc
Confidence 4556677777777777777776666554 5554 55 667777777777666 66666677777777777
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCch--H
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQ--V 322 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~--~ 322 (398)
++..+|+ ++.++..+|.++...|++++|+..|++++...+..+. +.+....++... ..+.+++...|.+ +
T Consensus 229 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 229 ALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 7777776 6777777777777777777777777666665444433 222223333333 3344444555554 4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++++|+++.++.++
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 455888888888999999999988888888888888999999999999999999999999899888888775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=239.97 Aligned_cols=298 Identities=13% Similarity=0.123 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
.+.........+++++|+..|++++...|+++..+.. +|.+ .| ++.|+..|.+++... |.+..++.
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~ 75 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR-RATVFLAMGKSKAALPDLTKVIALK---------MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhC---------CCcchHHH
Confidence 3444555567788999999999999999999888877 8877 77 999999999999998 99999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISP---KDSTALEGA------------AVTLAELGDYTRAVSLLQDLAKEKPSDPD 227 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 227 (398)
.+|.++...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..++++++..|.++.
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE 155 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 999999999999999999999999999 888888777 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----------
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----------- 296 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 296 (398)
++..+|.++...|++++|+..+++++...|. ++.++..+|.++...|++++|+..++++++..+..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999887766544
Q ss_pred ------Cchhhhcccccc--ccccccccCCCchH------HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 015907 297 ------DDLSVKDGRSGD--KKETEPQKVDPIQV------ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362 (398)
Q Consensus 297 ------~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 362 (398)
+......++... ..+.+++...|.+. +..+|.++...|++++|+.+|+++++.+|+++.++..+|.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 112233334333 33444555555533 3448999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 363 ILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 363 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++...|++++|+..|+++++++|+++.++..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999999999999999999999999877653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-31 Score=235.71 Aligned_cols=278 Identities=9% Similarity=-0.016 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 89 AAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 89 ~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
..+......+++++|+..|++++..+|.+...+.. ++.+ .| ++.|...+.+++... |.++.+|+.+
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l 96 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HIGTLVELNKANELFYLSHKLVDLY---------PSNPVSWFAV 96 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTSTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHH-HHHHHHHhhhHHHHHHHHHHHHHhC---------cCCHHHHHHH
Confidence 33444556789999999999999999999888765 4544 77 999999999999998 9999999999
Q ss_pred HHHHHHhc-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 165 ELSEEEKN-VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 165 a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc--CCCch
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK--VDPIQ 321 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 321 (398)
+|+.+|++++...|. ++.++..+|.++...|++++|+.++++++...+.... .. .....
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~~~~~ 237 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------EVTVDKWEP 237 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------SCTTTTCCH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------cccccHHHH
Confidence 999999999999999 9999999999999999999999999999887654322 01 11235
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..+.
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 67779999999999999999999999999999999999999999999999999999999999999999887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-30 Score=242.29 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
....+......+++.+|+..|++++...|.++..+.. +|.+ .| ++.|+..|.+++... |.+..++.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~ 98 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR-RATVFLAMGKSKAALPDLTKVIQLK---------MDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC---------CCcHHHHH
Confidence 3344455557789999999999999999999888877 7777 77 999999999999998 99999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGA------------AVTLAELGDYTRAVSLLQDLAKEKPSDPD 227 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 227 (398)
.+|.++...|++++|+..|++++..+|++. .++..+ |.++...|++++|+.+|+++++..|.+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999988 776655 66699999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----------
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----------- 296 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 296 (398)
++..+|.++...|++++|+..|++++..+|. ++.++..+|.++...|++++|+..|++++...+..+.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999887666543
Q ss_pred ------Cchhhhcccccc--ccccccccCCCch------HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 015907 297 ------DDLSVKDGRSGD--KKETEPQKVDPIQ------VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362 (398)
Q Consensus 297 ------~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 362 (398)
+......++... ..+.+++...|.+ .+..+|.++...|++++|+.+++++++.+|+++.+|..+|.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 122223333333 3345555566654 45559999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 363 ILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 363 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++...|++++|+..|+++++++|+++.++..+-
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999999999999999999877653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=239.10 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=248.7
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
-....++.++|+..|++++...|.+...+.. ++.+ .| .++|...|..++... |.+..++..+|.++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPL-HLASLHESGEKNKLYLISNDLVDRH---------PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTSHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhhC---------cccHHHHHHHHHHH
Confidence 3446788899999999999999988887766 5555 77 999999999999888 99999999999999
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|++++|+..|+++++.+|.+..+|..++.+|...|++++|+.+|+++++..|.+..++..+|.+|...|++++|+.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---hHHHH
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI---QVELL 325 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 325 (398)
|++++...|. ++.+|..+|.++...|++++|+.+|+++....+.. ..+|. .++..
T Consensus 464 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 464 LQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT---------------------QSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------------CCCSGGGHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc---------------------ccchhhHHHHHHH
Confidence 9999999999 99999999999999999999999999998754321 23444 45666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
+|.+|...|++++|+..|+++++..|+++.+|..+|.+|...|++++|+.+|+++++++|+++.++..+.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-30 Score=232.02 Aligned_cols=249 Identities=10% Similarity=-0.045 Sum_probs=226.5
Q ss_pred hhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc-HHHHHHHHHHH
Q 015907 110 IDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV-LQTRLKKYEET 184 (398)
Q Consensus 110 ~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~ 184 (398)
.+...|++...+.. +|.+ .| ++.|+..|.+++.++ |.+..+|+.+|.++...|+ +++|+.+|+++
T Consensus 89 ai~~~p~~~~a~~~-lg~~~~~~g~~~~Al~~~~~al~l~---------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a 158 (382)
T 2h6f_A 89 QIIYSDKFRDVYDY-FRAVLQRDERSERAFKLTRDAIELN---------AANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158 (382)
T ss_dssp EECCCHHHHHHHHH-HHHHHHHTCCCHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhhCChhhHHHHHH-HHHHHHHCCChHHHHHHHHHHHHhC---------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 35667777888877 7777 67 999999999999999 9999999999999999997 99999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+.++|++..+|+.+|.++..+|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|. +..+|
T Consensus 159 l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~ 237 (382)
T 2h6f_A 159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVW 237 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHH-cCCchHH-----HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC--Ch
Q 015907 265 RGLTNALLA-AKKPDEA-----VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG--RV 336 (398)
Q Consensus 265 ~~la~~~~~-~~~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~ 336 (398)
+.+|.++.. .|.+++| +.+|++++.+. .+...+|.++|.++...| ++
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-------------------------P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-------------------------PHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-------------------------CCCHHHHHHHHHHHHccCccch
Confidence 999999999 5665888 58898886632 222457777999999988 69
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhhCCCChHHHHHhh
Q 015907 337 SDAVAVYDRLISSYPNDFRGYLAKGIILKENG--------K-VGDAERMFIQA-RFFAPEKVKALVDQY 395 (398)
Q Consensus 337 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~ 395 (398)
++|+..++++ +.+|++..++..+|.+|..+| + +++|+.+|+++ ++++|.....|..+-
T Consensus 293 ~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 293 PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 9999999998 899999999999999999985 3 59999999999 999999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=212.58 Aligned_cols=200 Identities=20% Similarity=0.161 Sum_probs=176.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 235 VKYEL-----------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 235 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
++... |++++|+..|+++++++|+ ++.++..+|.++...|++++|+..|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 147 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL------------- 147 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------
Confidence 99999 9999999999999999999 9999999999999999999999999999873
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 304 GRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
. +...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 148 ------------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 ------------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ------------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred ------------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3 3456777899999999999999999999999999999999999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=227.57 Aligned_cols=232 Identities=18% Similarity=0.217 Sum_probs=205.9
Q ss_pred hhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHH
Q 015907 121 KTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALE 196 (398)
Q Consensus 121 ~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 196 (398)
+.. +|.. .| ++.|+..|++++... |.++.+|+.+|.++...|++++|+..|+++++.+|+++.++.
T Consensus 68 ~~~-~~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 137 (365)
T 4eqf_A 68 AFE-EGLKRLKEGDLPVTILFMEAAILQD---------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM 137 (365)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444 5555 78 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL----------LGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLR 265 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 265 (398)
.+|.+|...|++++|+.++++++++.|++..++.. +|.++...|++++|+.+|++++..+|.. ++.++.
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 99999999999999999999999999876655544 4999999999999999999999999973 588999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDR 345 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 345 (398)
.+|.++...|++++|+.+|+++++..+ ....++..+|.++...|++++|+.+|++
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRP-------------------------EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999976322 2235667799999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 346 LISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 346 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+++.+|+++.++..+|.+|..+|++++|+.+|++++++.|++
T Consensus 273 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=222.70 Aligned_cols=262 Identities=16% Similarity=0.156 Sum_probs=227.6
Q ss_pred HHhHHHHHH-hhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 97 EQKKAEEIK-EFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 97 ~~~~~eA~~-~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
.+++.+|+. .|.+++...|.++. .+.. +|.. .| ++.|+..|.+++... |.++.++..+|.+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~ 107 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQD---------PKHMEAWQYLGTT 107 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHH-HHHHHHHTTCHHHHHHHHHHHHHSC---------TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHH
Confidence 356778888 89888888777652 2333 5555 77 999999999999998 9999999999999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------H
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR----------------L 231 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~ 231 (398)
+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+. .
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876664 4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
++.++ ..|++++|+.+|++++..+|.. ++.++..+|.++...|++++|+.+|++++...
T Consensus 188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 247 (368)
T 1fch_A 188 LGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------- 247 (368)
T ss_dssp THHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 66666 8999999999999999999973 47899999999999999999999999997632
Q ss_pred ccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 015907 311 ETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK--- 387 (398)
Q Consensus 311 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 387 (398)
.....++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++.+.|++
T Consensus 248 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 248 ------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred ------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 22235667799999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------hHHHHHh
Q 015907 388 --------VKALVDQ 394 (398)
Q Consensus 388 --------~~~~~~l 394 (398)
..+|..+
T Consensus 322 ~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 322 RGEGGAMSENIWSTL 336 (368)
T ss_dssp ---CCCCCHHHHHHH
T ss_pred cccccchhhHHHHHH
Confidence 6777654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=212.28 Aligned_cols=247 Identities=11% Similarity=0.012 Sum_probs=222.6
Q ss_pred hhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 015907 110 IDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETL 185 (398)
Q Consensus 110 ~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 185 (398)
.+...|.+++.... ++.. .| ++.|+..|.+++... |.+...+..++.++...|++++|+..+++++
T Consensus 14 ~~~~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 83 (330)
T 3hym_B 14 SVDGLQENLDVVVS-LAERHYYNCDFKMCYKLTSVVMEKD---------PFHASCLPVHIGTLVELNKANELFYLSHKLV 83 (330)
T ss_dssp ------CCCTTHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhchhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC---------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555544 4444 67 999999999999998 9999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 186 SISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+.+|+++.++..+|.++...| ++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++...|. +..++
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 162 (330)
T 3hym_B 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPM 162 (330)
T ss_dssp HHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHH
T ss_pred HhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~ 342 (398)
..+|.++...|++++|+.++++++. ..|. .++..+|.++...|++++|+.+
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~---------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALS---------------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT---------------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---------------------------hCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999999855 3343 4566699999999999999999
Q ss_pred HHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 343 YDRLISSY---------PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 343 ~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+++++... |....++..+|.++...|++++|+.+|+++++++|+++.++..+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 276 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99999976 66788999999999999999999999999999999999988765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=218.63 Aligned_cols=258 Identities=15% Similarity=0.122 Sum_probs=234.8
Q ss_pred HHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 89 AAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 89 ~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
.........+++.+|+..|++++...|.++..+.. +|.+ .| ++.|+..|.+++.+. |.++.++..+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~l 138 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY-LGTTQAENEQELLAISALRRCLELK---------PDNQTALMAL 138 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCcCHHHHHHHHHHHHhcC---------CCCHHHHHHH
Confidence 34445567789999999999999999999998877 8877 77 999999999999999 9999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALE----------------GAAVTLAELGDYTRAVSLLQDLAKEKPS--DP 226 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~ 226 (398)
|.++...|++++|+..|++++...|.+...+. .++.++ ..|++++|+..++++++..|. ++
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccH
Confidence 99999999999999999999999999887665 466666 999999999999999999999 89
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|.++...|++++|+.+|++++..+|+ ++.++..+|.++...|++++|+.+|++++...
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 281 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------------- 281 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 99999999999999999999999999999999 99999999999999999999999999997632
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-----------hHHHHHHHHHHHHcCCHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-----------FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~ 375 (398)
.....++..+|.+|...|++++|+.+|++++.+.|++ ..+|..+|.++..+|++++|..
T Consensus 282 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 282 ----------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred ----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 2223566779999999999999999999999999888 8999999999999999999999
Q ss_pred HHHHHHhh
Q 015907 376 MFIQARFF 383 (398)
Q Consensus 376 ~~~~al~~ 383 (398)
.+++++..
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 99877764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=221.63 Aligned_cols=259 Identities=15% Similarity=0.110 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
+.........+++++|+..|++++...|++...+.. +|.+ .| ++.|+..|.+++.+. |.++.++..
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~ 138 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQ---------PNNLKALMA 138 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHH
Confidence 344555667889999999999999999999998887 8888 78 999999999999999 999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGA----------AVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRL 231 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 231 (398)
+|.++...|++++|+..|+++++..|++..++..+ |.++...|++++|+.+|+++++..|. ++.++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999999999999876666554 99999999999999999999999999 8999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 311 (398)
+|.++...|++++|+.+|++++...|+ ++.+|..+|.++...|++++|+.+|++++...
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------- 277 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-------------------- 277 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 999999999999999999999999999 99999999999999999999999999997632
Q ss_pred cccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 312 TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------------DFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 312 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
.+...++..+|.+|...|++++|+.+|++++++.|+ +..+|..++.++..+|+.+.+.....+
T Consensus 278 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 -----PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred -----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 222456677999999999999999999999999877 367899999999999999998887766
Q ss_pred HHh
Q 015907 380 ARF 382 (398)
Q Consensus 380 al~ 382 (398)
.+.
T Consensus 353 ~l~ 355 (365)
T 4eqf_A 353 DLD 355 (365)
T ss_dssp CCG
T ss_pred hHH
Confidence 443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=225.21 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=235.5
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhh------hcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTI------GLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~------~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
.+.+.+|+..|++++...|+++..+.. .+|.+ .| ++.|+..|.+++... |. ..++..+|.
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---------~~-~~~~~~l~~ 284 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---------PT-PNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---------CC-chHHHHHHH
Confidence 457889999999999999998764221 14444 66 899999999999998 88 899999999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLL 326 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (398)
.+|++++...|+ ++.++..+|.++...|++++|+.+|++++...+..+. ....-..+..+
T Consensus 365 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~~ 424 (537)
T 3fp2_A 365 AFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK-------------------IHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS-------------------CSSTTHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh-------------------hHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999887654422 00111234557
Q ss_pred HHHHHhC----------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 327 GKAYSDG----------GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 327 a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
|.++... |++++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|+++++++|++.....
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8889888 99999999999999999999999999999999999999999999999999999887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=216.50 Aligned_cols=263 Identities=17% Similarity=0.123 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
+.........+++++|+..|++++...|.+...+.. +|.+ .| ++.|...|.+++... |.+..++..
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~ 94 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS-LGLTQAENEKDGLAIIALNHARMLD---------PKDIAVHAA 94 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC---------cCCHHHHHH
Confidence 344555567789999999999999999999988877 7777 77 999999999999998 999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGA--------------AV-TLAELGDYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~ 228 (398)
+|.++...|++++|+..|++++...|.+...+..+ +. ++...|++++|+.+++++++..|.++.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999999999999998877776 66 6888999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
+..+|.++...|++++|+.++++++..+|+ ++.++..+|.++...|++++|+..++++++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------- 236 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN----------------- 236 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------
Confidence 999999999999999999999999999999 99999999999999999999999999987632
Q ss_pred ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHH
Q 015907 309 KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------------DFRGYLAKGIILKENGKVGDAERM 376 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~ 376 (398)
.....++..+|.++...|++++|+.+|++++...|. +..++..+|.++..+|++++|...
T Consensus 237 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 237 --------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222356667999999999999999999999999999 789999999999999999999999
Q ss_pred HHHHHhhCCC
Q 015907 377 FIQARFFAPE 386 (398)
Q Consensus 377 ~~~al~~~p~ 386 (398)
+++++...|+
T Consensus 309 ~~~~l~~~~~ 318 (327)
T 3cv0_A 309 YAQNVEPFAK 318 (327)
T ss_dssp TTCCSHHHHH
T ss_pred HHHHHHhcch
Confidence 9988876554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=218.13 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=207.5
Q ss_pred HHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHH
Q 015907 103 EIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRL 178 (398)
Q Consensus 103 A~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 178 (398)
+...+..++..+|.++..+.. +|.. .| ++.|+..|.+++... |.++.+++.+|.++...|++++|+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLE-LGKKLLAAGQLADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp ------------CHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccccccccHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHH
Confidence 344566777888988888877 7766 67 999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHH
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVFRLL------------GEVKYELKDYE 243 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~ 243 (398)
..|+++++.+|+++.++..+|.+|...|++++|+..|+++++..|.+. .++..+ |.++...|+++
T Consensus 81 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 81 PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999988 776655 66699999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE 323 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (398)
+|+..|++++...|. +..++..+|.++...|++++|+.+|++++...+.. ..++
T Consensus 161 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------------------~~~~ 214 (450)
T 2y4t_A 161 AAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN-------------------------TEAF 214 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-------------------------HHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------HHHH
Confidence 999999999999999 99999999999999999999999999997744322 3455
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK------------GIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 324 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..+|.+|...|++++|+..|++++...|++...+..+ |.++...|++++|+.+|++++.+.|+++.
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 5577777777777777777777777777777666555 77777777777777777777777777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=225.31 Aligned_cols=262 Identities=8% Similarity=-0.030 Sum_probs=238.2
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..++.++|++.|++++.. |.+...+.. ++.. .| +++|+.+|.+++... |.+..++..++.++...
T Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEID---------PYNLDVYPLHLASLHES 352 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCCTTHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC-CchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHcC---------cccHHHHHHHHHHHHHh
Confidence 357788999999998877 556666655 5555 77 999999999999888 88888999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
|++++|+..|++++...|+++.++..+|.+|...|++++|+.+|+++++..|.+..+|..++.++...|++++|+..|++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS 331 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 331 (398)
++...|+ +..++..++.++...|++++|+.+|+++....+ .....+..+|.+|.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-------------------------YDPLLLNELGVVAF 486 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------------------------CCHHHHHHHHHHHH
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CChHHHHHHHHHHH
Confidence 9999999 899999999999999999999999999876322 22345666999999
Q ss_pred hCCChHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 332 DGGRVSDAVAVYDRLISS------YPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
..|++++|+.+|+++++. +|++ ..+|..+|.+|...|++++|+..|+++++++|+++.+|..+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999998 5654 78999999999999999999999999999999999988765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-27 Score=211.86 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=224.6
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
+|.. .| ++.|+..|.+++... |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 5555 77 999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLL------------GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
++...|++++|+..|+++++..| ++..++..+ |.++...|++++|+..+++++...|. ++.++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 99999999999999999999999 888888777 79999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchHHH--------------
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQVEL-------------- 324 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------- 324 (398)
.+|.++...|++++|+..+++++...+..+. +.+....++... ..+..++...|.....
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998776555443 333333444443 3344555555654322
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFR----GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 2488899999999999999999999998864 466789999999999999999999999999998888765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=224.72 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=241.5
Q ss_pred HHhHHHHHHhhcchhh-----c--CCC-------chhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChH
Q 015907 97 EQKKAEEIKEFGPIDY-----D--API-------ETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE 158 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~-----~--~p~-------~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~ 158 (398)
.+++++|+..|++++. . .|+ ....+.. +|.+ .| ++.|+..|.+++... |. .
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~---------~~-~ 270 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH-TGIFKFLKNDPLGAHEDIKKAIELF---------PR-V 270 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-HHHHHHHSSCHHHHHHHHHHHHHHC---------CC-H
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC---------cc-H
Confidence 6788999999999887 4 444 3444444 6665 67 999999999999998 88 9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
.|++++|+..|++++...|. ++.++..+|.++...|++++|+.+|++++...+..+. ...
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------~~~ 410 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG-------------------IYV 410 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS-------------------CSS
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch-------------------HHH
Confidence 99999999999999999999 8999999999999999999999999999886554311 011
Q ss_pred CchHHHHHHHHHHh---CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 319 PIQVELLLGKAYSD---GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 319 ~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
...++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 12377789999999 99999999999999999999999999999999999999999999999999999999887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=214.71 Aligned_cols=214 Identities=13% Similarity=0.025 Sum_probs=198.8
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-YTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.|.+..+|..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 388999999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
|.++..+|++++|+.+|++++.++|+ +..+|..+|.++...|++++|+.+|+++++.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---------------------- 229 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---------------------- 229 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----------------------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------------
Confidence 99999999999999999999999999 9999999999999999999999999999763
Q ss_pred ccccCCCchHHHHHHHHHHh-CCChHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhC
Q 015907 313 EPQKVDPIQVELLLGKAYSD-GGRVSDA-----VAVYDRLISSYPNDFRGYLAKGIILKENG--KVGDAERMFIQARFFA 384 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 384 (398)
......+|.++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.++++ +.+
T Consensus 230 ---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 230 ---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred ---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 22234677779999999 5665888 59999999999999999999999999988 699999999998 999
Q ss_pred CCChHHHHHh
Q 015907 385 PEKVKALVDQ 394 (398)
Q Consensus 385 p~~~~~~~~l 394 (398)
|+++.++..+
T Consensus 306 p~~~~al~~L 315 (382)
T 2h6f_A 306 HSSPYLIAFL 315 (382)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9998877654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=203.30 Aligned_cols=230 Identities=14% Similarity=0.048 Sum_probs=198.5
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLA 203 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~ 203 (398)
.| ++.|+..|.+++... |.++.++..+|.++...|++++|+..|++++. .|.+ ..++..+|.++.
T Consensus 16 ~~~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK---------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT---------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 67 899999999999888 88888999999999999999999999999998 4444 445899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
..|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|. ++.++..+|......+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 899999999555555699999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCC---hHHHHHHHHHHHHhC---CC-----
Q 015907 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR---VSDAVAVYDRLISSY---PN----- 352 (398)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~----- 352 (398)
|+++++..+ +....+..+|.++...|+ +++|+..|+++++.. |+
T Consensus 165 ~~~a~~~~p-------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 165 FVKVLELKP-------------------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHST-------------------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHhCc-------------------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 999866322 223566669999988888 888999999999875 44
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
...++..+|.+|...|++++|+.+|+++++++|+++.++-.+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 236888999999999999999999999999999999887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=222.39 Aligned_cols=264 Identities=12% Similarity=0.074 Sum_probs=222.1
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
........+++++|+..|++++..+|+++..+.. +|.+ .| ++.|+..|.+++.+. |.++.+++.+|
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la 100 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN-ISACYISTGDLEKVIEFTTKALEIK---------PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC---------CchHHHHHHHH
Confidence 3344446778899999999999999999988877 8887 77 999999999999998 99999999999
Q ss_pred HHHHHhccHHHHHHHH----------------------------------------------------------------
Q 015907 166 LSEEEKNVLQTRLKKY---------------------------------------------------------------- 181 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~---------------------------------------------------------------- 181 (398)
.++...|++++|+..|
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999888877776655
Q ss_pred ---------------------------------------------HHHHhcCCCCHH-------HHHHHHHHHHHcCCHH
Q 015907 182 ---------------------------------------------EETLSISPKDST-------ALEGAAVTLAELGDYT 209 (398)
Q Consensus 182 ---------------------------------------------~~~l~~~p~~~~-------~~~~la~~~~~~g~~~ 209 (398)
+++++.+|+++. ++..+|.++...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 344455666643 4777788888889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+|+..++++++..|+ ..++..+|.++...|++++|+.+|++++..+|+ ++.++..+|.++...|++++|+..|++++.
T Consensus 261 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999988 888889999999999999999999999999998 889999999999999999999999988866
Q ss_pred HhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 290 RLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
..+ ....++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 339 ~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 339 LNP-------------------------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HCT-------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred hCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 322 2235677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHH
Q 015907 370 VGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 370 ~~~A~~~~~~al~~~p~~~~~ 390 (398)
+++|+..|++++.+.|++...
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCcchhh
Confidence 999999999999988776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=205.53 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=210.3
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|+..|.+++... |.+..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA---------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 67 999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLL--------------GE-VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+++|+..++++++..|.+...+..+ +. ++...|++++|+.++++++...|. +..++..+|.++.
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 9999999999999999988777776 66 688899999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..|++++|+.++++++...+ ....++..+|.++...|++++|+.+|+++++..|+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRP-------------------------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhccHHHHHHHHHHHHHhCC-------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999866322 22356667999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHh
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPE------------KVKALVDQ 394 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l 394 (398)
+..++..+|.++...|++++|+..|++++.+.|+ ++.+|..+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF 292 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence 9999999999999999999999999999999999 67776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=195.69 Aligned_cols=214 Identities=13% Similarity=0.175 Sum_probs=182.3
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
..+..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
+...|++++|+.+|++++...|. +..++..+|.++...|++++|+.++++++...+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------------------- 156 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----------------------- 156 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------------
Confidence 99999999999999999999999 999999999999999999999999999876322
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
....++..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++|+.+|+++++++|+++.++..+-
T Consensus 157 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 157 --NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp --TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 223566679999999999999999999999999999999999999999999999999999999999999999887653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-26 Score=214.90 Aligned_cols=285 Identities=10% Similarity=0.005 Sum_probs=191.7
Q ss_pred HHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 92 RRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 92 ~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
......+++.+|+..|++++...|+ +..+.. +|.+ .| ++.|+..|.+++... |.+..+++.+|.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKED-PVFYSN-LSACYVSVGDLKKVVEMSTKALELK---------PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCC-HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------SCCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcc-HHHHHh-HHHHHHHHhhHHHHHHHHHHHhccC---------hHHHHHHHHHHHH
Confidence 3344556777777777777777773 444444 5555 56 777777777777776 7777777777777
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCC--------------------------------------------------------
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKD-------------------------------------------------------- 191 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~-------------------------------------------------------- 191 (398)
+...|++++|+..|++++...|.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 777777777777777776665422
Q ss_pred -----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHH
Q 015907 192 -----------------------STALEGAAVTLAE---LGDYTRAVSLLQDLAK-----E--K-------PSDPDVFRL 231 (398)
Q Consensus 192 -----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~ 231 (398)
+.++..+|.++.. .|++++|+.+|+++++ + . |.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 4445555555554 6666666666666666 3 2 233455666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRS 306 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 306 (398)
+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++...+..+. +.+....++.
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 666666666666666666666666665 666666666666666666666666665554433322 2222223333
Q ss_pred cc--ccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 307 GD--KKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 307 ~~--~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.. ..+.+++...|. .++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 223333334444 45666999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChH
Q 015907 383 FAPEKVK 389 (398)
Q Consensus 383 ~~p~~~~ 389 (398)
..|+++.
T Consensus 401 ~~~~~~~ 407 (514)
T 2gw1_A 401 LENKLDG 407 (514)
T ss_dssp HHHTSSS
T ss_pred hhhccch
Confidence 9888754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=194.06 Aligned_cols=214 Identities=18% Similarity=0.134 Sum_probs=195.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PD 227 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 227 (398)
+..+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3456789999999999999999999999999999 899999999999999999999999999999998876 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--------------------------hCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTM--------------------------VSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
++..+|.++...|++++|+.+|++++. .+|. +..++..+|.++...|++++|+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999 5566 6778999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
..|++++...+ ....++..+|.++...|++++|+.+|+++++.+|+++.++..+|
T Consensus 160 ~~~~~a~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 160 KAYTEMIKRAP-------------------------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCc-------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999976322 22356667999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHhh
Q 015907 362 IILKENGKVGDAERMFIQARFFA------PEKVKALVDQY 395 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~ 395 (398)
.++..+|++++|+..|+++++++ |++..++..+.
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 99999999999999999999999 98888776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-25 Score=190.23 Aligned_cols=214 Identities=17% Similarity=0.116 Sum_probs=199.3
Q ss_pred CCh-HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 155 PTE-EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 155 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
|.. +.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 554 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTM--VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 311 (398)
.++...|++++|+.+|++++. ..|. +..++..+|.++...|++++|+.++++++...
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------- 171 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------------------- 171 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 999999999999999999999 7887 88999999999999999999999999987632
Q ss_pred cccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 312 TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 312 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
.....++..+|.++...|++++|+.+++++++..|.+...+..++.++...|++++|..++++++++.|+++.++
T Consensus 172 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 172 -----RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp -----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred -----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 222356667999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHh
Q 015907 392 VDQ 394 (398)
Q Consensus 392 ~~l 394 (398)
.-+
T Consensus 247 ~~l 249 (252)
T 2ho1_A 247 EFQ 249 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=191.02 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=163.6
Q ss_pred CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 115 PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 115 p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
|.++..+.. +|.+ .| +++|+..|++++..+ |.++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 2 p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLR-LGVQLYALGRYDAALTLFERALKEN---------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71 (217)
T ss_dssp --CCHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTS---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 556666665 7766 77 999999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 191 DSTALEGAAVTLAEL-----------GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 191 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
++.++..+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~- 149 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D- 149 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-
Confidence 999999999999999 999999999999999999999999999999999999999999999999999 7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA 339 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 339 (398)
++.++..+|.++...|++++|+..|+++++.. ++...++..+|.++...|++++|
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQA-------------------------PKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHTC-------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCChHHHHHHHHHHHHccCHHHH
Confidence 89999999999999999999999999996632 22235666799999999999999
Q ss_pred HHHHHHHH
Q 015907 340 VAVYDRLI 347 (398)
Q Consensus 340 ~~~~~~al 347 (398)
+..|+++-
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=184.25 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
+++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|. +..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666677777767666666666 6666666666
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
++...++++.|+..+.++.... .....++..+|.+|...|++++|+..|++++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-------------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 6666677777776666664421 112234455777777777888888888888888
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 350 YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 350 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+|.++.++..+|.+|..+|++++|+..|+++++++|+++.
T Consensus 137 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 137 KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 8888888888888888888888888888888888887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=183.46 Aligned_cols=215 Identities=13% Similarity=-0.024 Sum_probs=199.6
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+++++++..|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCHHHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 234 EVKYEL-KDYEGSAAAYRVSTM--VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 234 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
.++... |++++|+.++++++. ..|. ...++..+|.++...|++++|+.+++++++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------ 144 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP------------------ 144 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------
Confidence 999999 999999999999999 5666 688999999999999999999999999876322
Q ss_pred ccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 311 ETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP-NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 311 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
....++..+|.++...|++++|+.+++++++..| .+...+..++.++...|++++|..+++.+...+|+++.
T Consensus 145 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 145 -------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp -------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 2235666799999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred HHHHh
Q 015907 390 ALVDQ 394 (398)
Q Consensus 390 ~~~~l 394 (398)
+..-+
T Consensus 218 ~~~~l 222 (225)
T 2vq2_A 218 LQTVL 222 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=193.61 Aligned_cols=254 Identities=12% Similarity=0.093 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
+..+......+++++|+..|++++..+|.++..+.. +|.+ .| ++.|+..|.+++... ........++..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~ 79 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETYFSKV------NATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHH-HHHHHHHTTCHHHHHHHHHHHHTTS------CTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhcc------CchhHHHHHHHH
Confidence 334445557788999999999999999999888777 7777 77 999999999999722 111223566999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|......++++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995555567999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC-
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK---PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP- 319 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (398)
+|+.+|+++++.+|+ +..++..+|.++...++ +++|+..|+++++.....+. .. .+
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~-~~~ 219 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA------------------KY-KDE 219 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG------------------GG-HHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc------------------cc-hHH
Confidence 999999999999999 99999999999999999 99999999999886643311 00 00
Q ss_pred -chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 320 -IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 320 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
..++..+|.+|...|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1456669999999999999999999999999999999998888765543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=193.14 Aligned_cols=258 Identities=12% Similarity=0.027 Sum_probs=215.7
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCch-hhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIET-EKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~-~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
++.....+.+.+|+..++.+....|.+. +.... ++.. .| ++.|+..+... .|....++..++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~-l~r~yi~~g~~~~al~~~~~~------------~~~~~~a~~~la 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVF-LYRAYLAQRKYGVVLDEIKPS------------SAPELQAVRMFA 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHH-HHHHHHHTTCHHHHHHHSCTT------------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHH-HHHHHHHCCCHHHHHHHhccc------------CChhHHHHHHHH
Confidence 4555677888999999888877777663 34333 4433 67 88887655331 266778888999
Q ss_pred HHHHHhccHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSI--SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
..+...+++++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|+++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999876 699999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHH--HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLT--NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
+|+..|++++..+|+ +.......+ .++...|++++|+.+|++++...+ +...
T Consensus 148 ~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-------------------------~~~~ 201 (291)
T 3mkr_A 148 LARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-------------------------PTLL 201 (291)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-------------------------CCHH
T ss_pred HHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-------------------------CcHH
Confidence 999999999999998 765444333 444456899999999999976322 2234
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChHHHH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGD-AERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 392 (398)
++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 566699999999999999999999999999999999999999999999976 57899999999999987653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=214.49 Aligned_cols=260 Identities=15% Similarity=0.057 Sum_probs=201.7
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
+++++|+..|++++..+|++++.+.. ++.+ .| ...|+..|.+++.+. |.++.++..+|..+..
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~-~~~~~~~l~~~~~~~~al~~~~~al~l~---------p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSG-LAIASYRLDNWPPSQNAIDPLRQAIRLN---------PDNQYLKVLLALKLHK 221 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHH-HHHHHHHHHHSCCCCCTHHHHHHHHHHC---------SSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHhhcC---------CcchHHHHHHHHHHHH
Confidence 46889999999999999999988765 6655 24 678999999999999 9999999888876654
Q ss_pred ----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------
Q 015907 171 ----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL------- 239 (398)
Q Consensus 171 ----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------- 239 (398)
.|++++|+.+|++++..+|..+.++..+|.+|...|++++|+..++++++..|+++.++..+|.+|...
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 567889999999999999999999999999999999999999999999999999999999999988653
Q ss_pred ------------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 240 ------------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 240 ------------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
+.++.|+..|++++.++|. +..++..+|.++...|++++|+.+|++++..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~----------------- 363 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK----------------- 363 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----------------
Confidence 3478899999999999999 8999999999999999999999999998662
Q ss_pred cccccccccCCCch---HHHHHHHH-HHhCCChHHHHHHHHHHHHh------------------------CCCChHHHHH
Q 015907 308 DKKETEPQKVDPIQ---VELLLGKA-YSDGGRVSDAVAVYDRLISS------------------------YPNDFRGYLA 359 (398)
Q Consensus 308 ~~~~~~~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~~~~ 359 (398)
...+.. ++..+|.+ +...|++++|+..|++++++ +|.++.++..
T Consensus 364 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 364 --------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred --------CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 222222 33446654 45789999999999988765 5667789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 360 KGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 360 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+|.+|..+|++++|+++|++|+++.|.+|.++..
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999998877643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=189.98 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=200.6
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|+..|.+++.... ...|..+.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRA-----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHhccc-----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 56 8999999999987631 11256788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.+|+++++..|.++.++..+|.++...|++++|+.+|++++...|+ +......++.. ...|++++|+..+.++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 77666655544 6679999999999888
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC----ChHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN----DFRGYLAKGII 363 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~ 363 (398)
....+. ......++.++...++.++|+..+++++...|. +..++..+|.+
T Consensus 171 ~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 171 FEKSDK--------------------------EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHSCC--------------------------CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCc--------------------------chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 663321 122334888888899999999999999876664 36899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 364 LKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+...|++++|+.+|++++.++|++...+.
T Consensus 225 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 253 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVANNVHNFVEHR 253 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCchhHHHHH
Confidence 99999999999999999999998766554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=204.73 Aligned_cols=216 Identities=11% Similarity=-0.004 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL-QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT 209 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 209 (398)
++.++..+....... |..+.+++.+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.+|...|+++
T Consensus 84 ~~~al~~l~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTC---------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccC---------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 788888888887777 89999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc------
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYEL---------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA------ 274 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~------ 274 (398)
+|+.+|+++++++|+ ..++..+|.++... |++++|+..|+++++++|+ +..+|..+|.++...
T Consensus 155 ~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 155 SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999 79999999999999 9999999999999999999 999999999999999
Q ss_pred --CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 275 --KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 275 --~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
|++++|+.+|+++++..+.. .....++..+|.+|...|++++|+..|+++++++|+
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKA----------------------SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG----------------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHhCCCc----------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999997742200 022456777999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+..++..++.++..+|++++|+..+.+
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=176.18 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
+++.+|+.+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
+...++++.|+..+.+++...|. +..++..+|.++...|++++|+..|+++++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------------------------ 137 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------------------------ 137 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------------------------
Confidence 99999999999999999999999 99999999999999999999999999997632
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 354 (398)
+....++..+|.+|..+|++++|+.+|+++++++|+++
T Consensus 138 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 138 -PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred -chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 22235667799999999999999999999999999764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-23 Score=181.02 Aligned_cols=233 Identities=13% Similarity=0.086 Sum_probs=208.2
Q ss_pred CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Q 015907 114 APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE----KNVLQTRLKKYEETL 185 (398)
Q Consensus 114 ~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l 185 (398)
.|+++..+.. +|.+ .| ++.|+.+|.+++. |.++.+++.+|.++.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~-lg~~~~~~~~~~~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 2 AEQDPKELVG-LGAKSYKEKDFTQAKKYFEKACD-----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp ---CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHH-HHHHHHhCCCHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 4667777766 7776 56 9999999999985 4566789999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCC
Q 015907 186 SISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 257 (398)
+.+ ++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.+
T Consensus 70 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 70 DLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 985 89999999999999 999999999999999874 78999999999999 999999999999999975
Q ss_pred CCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh-
Q 015907 258 DINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD- 332 (398)
Q Consensus 258 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~- 332 (398)
++.++..+|.++.. .+++++|+.+|+++.+ ..+..++..+|.+|..
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~---------------------------~~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD---------------------------LKDSPGCFNAGNMYHHG 195 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------------------------TTCHHHHHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------------------------CCCHHHHHHHHHHHHcC
Confidence 57899999999999 9999999999999855 3455778889999999
Q ss_pred ---CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 333 ---GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 333 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+|++++++.|+++..++..
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 262 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999865 8899999999999 9999999999999999999887776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=180.63 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=182.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|+..|.+++... |.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|+
T Consensus 36 ~~~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN---------KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ------CCTTHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hhCHHHHHHHHHHHHHhC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 66 888999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.+++++++..|.+..++..+|.++...|++++|+.++++++...|. +..++..+|.++...|++++|+.+++++
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999998
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
+...+ ....++..+|.++...|++++|+.+|+++++.+|++..++..++.+....
T Consensus 186 ~~~~~-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 186 TEQDP-------------------------GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHCT-------------------------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHhCc-------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 76322 22356667999999999999999999999999999999999988876655
Q ss_pred CC
Q 015907 368 GK 369 (398)
Q Consensus 368 g~ 369 (398)
|+
T Consensus 241 ~~ 242 (243)
T 2q7f_A 241 HH 242 (243)
T ss_dssp --
T ss_pred cC
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=196.93 Aligned_cols=294 Identities=12% Similarity=0.023 Sum_probs=226.6
Q ss_pred HHHhHHHHHHhhcchhhc---------CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYD---------APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~---------~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
..+++++|++.|++.+.. +|.....+.. +|.+ .| +++|..+|.+++.+...... ...+..+.++.
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n-la~~y~~~g~~~~A~~~~~ka~~i~~~~~~-~~~~~~~~~~~ 140 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN-YAWVYYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDC 140 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-SSCCCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHhHhccc-ccchhhHHHHH
Confidence 457889999999887653 4444445555 7776 78 99999999999987643332 12356678888
Q ss_pred HHHHHHHHh--ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 163 NKELSEEEK--NVLQTRLKKYEETLSISPKDSTALEGAAVTLA---ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 163 ~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
.+|.++... +++++|+.+|+++++++|+++.++..++.++. ..+++++|++.++++++++|+++.++..+|..+.
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 888877765 47999999999999999999999999998865 4578899999999999999999999999987766
Q ss_pred H----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCC-----chhhhcc----
Q 015907 238 E----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD-----DLSVKDG---- 304 (398)
Q Consensus 238 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~---- 304 (398)
. .|++++|+.++++++..+|. ...++..+|.+|...|++++|+..|.++++..+..... .++...+
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 5 46788999999999999999 99999999999999999999999999998877765431 1110000
Q ss_pred ---------------ccc--cccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH---HHHHHHH
Q 015907 305 ---------------RSG--DKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR---GYLAKGI 362 (398)
Q Consensus 305 ---------------~~~--~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~ 362 (398)
... ...+.++...+|. .++..+|.+|...|++++|+.+|+++++..|++.. ++..+|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 000 0223344445554 45566999999999999999999999998887643 4566776
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 363 IL-KENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 363 ~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
++ ...|++++|+..|++++.++|++.....
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 54 5788999999999999999998876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=184.77 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=200.8
Q ss_pred HhHHHHHHhhcchhhcC----CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDA----PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~----p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
+++++|+..|++++... |..+..+.. +|.+ .| ++.|+..|.+++.+. |.++.++..+|.++.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYE-RGVLYDSLGLRALARNDFSQALAIR---------PDMPEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHH-HHHHHHHcccHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHH
Confidence 45677888888888764 344555555 7776 77 999999999999998 999999999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+++++++..|++......++.+ ...|++++|+..+
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998776666544 6679999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC------chHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP------IQVE 323 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 323 (398)
++++...|. +...+ .++.++...++.++|+..+.++. ...| ..++
T Consensus 168 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~---------------------------~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 168 KQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADA---------------------------TDNTSLAEHLSETN 218 (275)
T ss_dssp HHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHC---------------------------CSHHHHHHHHHHHH
T ss_pred HHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHh---------------------------cccccccccccHHH
Confidence 999999988 65554 47778888899999999998773 2333 2456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 324 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
..+|.++...|++++|+.+|++++..+|++... .+.++..+|++++|+..+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 669999999999999999999999999987544 477889999999999887
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-23 Score=181.80 Aligned_cols=222 Identities=10% Similarity=0.029 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH-------hccH-------HHHHHHHHHHHh-cCCCCHHHHH
Q 015907 132 GVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE-------KNVL-------QTRLKKYEETLS-ISPKDSTALE 196 (398)
Q Consensus 132 ~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~~~~ 196 (398)
..|+..|++++... |.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|.
T Consensus 33 ~~a~~~~~~al~~~---------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHH
Confidence 67888999999999 9999999999988874 4775 999999999999 7999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH-c
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA-A 274 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~-~ 274 (398)
.+|.++...|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++++..|. ...+|...+.+... .
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887 9999999999999999999999999999998 88888777666543 7
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh---CC
Q 015907 275 KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS---YP 351 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p 351 (398)
|++++|+.+|+++++..+. ...++..++.++...|++++|+.+|++++.. .|
T Consensus 183 ~~~~~A~~~~~~al~~~p~-------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGD-------------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred CCHHHHHHHHHHHHHhCCC-------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 9999999999999774332 2356666999999999999999999999995 55
Q ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 352 -NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 352 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
....+|..++..+...|++++|...++++++..|++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 3678999999999999999999999999999999854
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-23 Score=173.19 Aligned_cols=205 Identities=13% Similarity=0.103 Sum_probs=180.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP-KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55678999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINF-------EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|++++|+..|++++.++|+ ++ .++..+|.++...|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a------------------- 143 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA------------------- 143 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-------------------
Confidence 9999999999999999999999999 88 66999999999999999999999998
Q ss_pred ccccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 307 GDKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 307 ~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+..+|. .++..+|.+|... +...++++..+.+.....+ .+......+.+++|+.+|+++++
T Consensus 144 --------l~~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 144 --------TDVTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp --------TTSSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HhcCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666 4555699998654 4455677777777665443 44455667889999999999999
Q ss_pred hCCCChHHHHHh
Q 015907 383 FAPEKVKALVDQ 394 (398)
Q Consensus 383 ~~p~~~~~~~~l 394 (398)
++|+++.++..+
T Consensus 209 l~p~~~~~~~~l 220 (228)
T 4i17_A 209 LSPNRTEIKQMQ 220 (228)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 999998876654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=185.44 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=195.7
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh-HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE-EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG 206 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 206 (398)
.| +..|+..++.+.... |.. ......++.++...|+++.|+..++. .+|....++..++..+...+
T Consensus 12 ~g~y~~ai~~~~~~~~~~---------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSS---------PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp TTCHHHHHHHHHHSCCCS---------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHhcccCC---------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC
Confidence 78 999999888876555 666 35778889999999999999998865 25656778899999999999
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 207 DYTRAVSLLQDLAKE--KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 207 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
++++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |. ++.++..+|.++..+|++++|+..|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD-SLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC-SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999986 699999999999999999999999999998 77 8999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH----HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH
Q 015907 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG----KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360 (398)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 360 (398)
+++.+ .+|......++ .++...|++++|+.+|+++++.+|+++.+++.+
T Consensus 154 ~~~~~---------------------------~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 154 KKMQD---------------------------QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp HHHHH---------------------------HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHh---------------------------hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99866 34555444433 344456999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 361 GIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
|.++..+|++++|+..|++++.++|++++++.++.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999998864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=207.98 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=87.6
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.|+++.++.++|.++...|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..+|.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 36666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
.++..+|++++|++.|+++++++|+ +..++.++|.++..+|++++|+..|+++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666 666666666666555555555555555533
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=199.23 Aligned_cols=280 Identities=15% Similarity=0.064 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCC
Q 015907 85 EERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPT 156 (398)
Q Consensus 85 ~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~ 156 (398)
...+.........+++++|+..|++++...|+++. .+.. +|.+ .| ++.|+..|.+++.+.... ...|.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQ-LGNAYFYLGDYNKAMQYHKHDLTLAKSM---NDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHc---cCchH
Confidence 33344555556778999999999999999998764 3434 6666 78 999999999999873111 11277
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSI------SPKDSTALEGAAVTLAELGD-----------------YTRAVS 213 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 213 (398)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7889999999999999999999999999988 45567799999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-C----HHHHHHHHHHHHHcCCchHHHH
Q 015907 214 LLQDLAKEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-N----FEVLRGLTNALLAAKKPDEAVQ 282 (398)
Q Consensus 214 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~~la~~~~~~~~~~~A~~ 282 (398)
++++++++. +....++..+|.++...|++++|+.+|++++.+.+.. + ..++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998864 2335689999999999999999999999999987641 1 2388999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHH
Q 015907 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRG 356 (398)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 356 (398)
+|++++...+.... .......+..+|.++...|++++|+.+|++++.+.+.. ..+
T Consensus 285 ~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 285 HYKRTLALAVELGE-------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999886543211 00012455569999999999999999999999875432 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 357 YLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=178.65 Aligned_cols=228 Identities=12% Similarity=0.023 Sum_probs=203.6
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCCh-------HH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTE-------EA 159 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~-------~~ 159 (398)
.......+++++|+..|++++... .++..+.. +|.+ .| ++.|+..|.+++.+. |.. +.
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~ 80 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNN-RAAAEYEKGEYETAISTLNDAVEQG---------REMRADYKVISK 80 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHH---------HHTTCCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHH-HHHHHHHcccHHHHHHHHHHHHHhC---------cccccchHHHHH
Confidence 334446788999999999999888 77777766 7777 77 999999999999988 554 78
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
++..+|.++...|++++|+.+|++++...|. +.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 56788889999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|++++|+.+|++++..+|. ++.++..+|.++...|++++|+.++++++... .+.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------------~~~ 206 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------------------------PNF 206 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTC
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------------HHH
Confidence 9999999999999999999 99999999999999999999999999997632 222
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCChHHHHHHHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSY------PNDFRGYLAKGII 363 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 363 (398)
..++..+|.++...|++++|+.+|++++++. |.+..++..++.+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4566779999999999999999999999999 8888888877765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=197.30 Aligned_cols=275 Identities=14% Similarity=0.058 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA 159 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~ 159 (398)
+.........+++++|+..|++++...|.++. .+.. +|.+ .| ++.|+..|.+++.+.... ...|....
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~ 88 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ-LGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhc---cccHHHHH
Confidence 44455566788999999999999999998754 3334 6666 77 999999999998774221 12256678
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGD--------------------YTRAVS 213 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 213 (398)
++..+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999886543 4589999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHHcCCchHHH
Q 015907 214 LLQDLAKEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN------FEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 214 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~la~~~~~~~~~~~A~ 281 (398)
++++++.+. |....++..+|.++...|++++|+.++++++.+.|. . ..++..+|.++...|++++|+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999998862 333568999999999999999999999999988654 3 238899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FR 355 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 355 (398)
.++++++...+.... ......++..+|.++...|++++|+.+|++++++.+.. ..
T Consensus 248 ~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 248 EYYKKTLLLARQLKD-------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcC-------------------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 999999876543211 00002355569999999999999999999999875543 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++..+|.+|...|++++|+.+|++++++.+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999987543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=195.49 Aligned_cols=198 Identities=20% Similarity=0.175 Sum_probs=184.4
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDY-TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
..+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345688899999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHc---------CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAA---------KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|+++++++|+ ..++..+|.++... |++++|+.+|+++++.. .+.
T Consensus 160 ~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~ 212 (474)
T 4abn_A 160 FSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------------------------VLD 212 (474)
T ss_dssp HHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------------------------TTC
T ss_pred HHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------------------------CCC
Confidence 9999999997 69999999999999 99999999999997732 222
Q ss_pred chHHHHHHHHHHhC--------CChHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 320 IQVELLLGKAYSDG--------GRVSDAVAVYDRLISSYP---NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 320 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
..++..+|.+|... |++++|+.+|+++++++| +++.+|+++|.+|..+|++++|+..|+++++++|+++
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45677799999999 999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 015907 389 KALVDQ 394 (398)
Q Consensus 389 ~~~~~l 394 (398)
.++.++
T Consensus 293 ~a~~~l 298 (474)
T 4abn_A 293 EPQQRE 298 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=190.33 Aligned_cols=279 Identities=14% Similarity=0.066 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCCh
Q 015907 86 ERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTE 157 (398)
Q Consensus 86 ~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~ 157 (398)
..+.........+++++|+..|++++...|.++. .+.. +|.+ .| ++.|+..+.+++.+.... ...|..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ-LGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhhcc---cccHHH
Confidence 3344455566788999999999999999998753 3333 6665 77 999999999998773111 112566
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGD--------------------YTRA 211 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 211 (398)
..++..+|.++...|++++|+.+|++++...|.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 7889999999999999999999999999876543 3489999999999999 9999
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHH
Q 015907 212 VSLLQDLAKEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 212 ~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A 280 (398)
+.++++++.+. +....++..+|.++...|++++|+.++++++.+.+.. ...++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998762 2335688999999999999999999999999875431 133889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------h
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------F 354 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 354 (398)
+.++++++...+.... .......+..+|.++...|++++|+.++++++...+.. .
T Consensus 243 ~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhcc-------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999999876543211 00002345559999999999999999999999875543 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.++..+|.+|...|++++|..++++++.+.+..
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=203.03 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=163.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
..|++++++.++|.+|..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+.+|+++++++|+ +..++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+|.++..+|++++|+..|++++++. .+...++.++|.+|..+|++++|+..|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-------------------------PAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999997632 222467777999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 347 ISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 347 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
++++|+++.++.++|.++..+|++++|++.+++++++.|+.
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999999999999999999999999887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=173.23 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=185.2
Q ss_pred hhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH
Q 015907 119 EKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA 194 (398)
Q Consensus 119 ~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 194 (398)
..+.. +|.+ .| ++.|+..|.+++... |.+..++..+|.++...|++++|+..|+++++.+|.+..+
T Consensus 38 ~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 38 DAYIQ-LGLGYLQRGNTEQAKVPLRKALEID---------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp HHHHH-HHHHHHHTTCTGGGHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHH-HHHHHHHcCChHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH
Confidence 33433 5555 66 889999999999888 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+..+|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+.+|++++...|. +..++..+|.++.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 99999999999999999999999999 88888999999999999999999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..|++++|+.++++++.. .......+..++.++...|++++|..+++++++..|+
T Consensus 187 ~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQG-------------------------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HTTCHHHHHHHHHHHHTT-------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHh-------------------------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999988542 1222345666999999999999999999999999999
Q ss_pred ChHHHHHH
Q 015907 353 DFRGYLAK 360 (398)
Q Consensus 353 ~~~~~~~l 360 (398)
++.++..+
T Consensus 242 ~~~~~~~l 249 (252)
T 2ho1_A 242 SLEYQEFQ 249 (252)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 98776543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=181.08 Aligned_cols=247 Identities=11% Similarity=0.019 Sum_probs=211.1
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh-h---------c-H-------HHHHHHHHHHHh-ccCCCCCCCCCCChHHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK-I---------G-V-------GVAVVIFGLVFA-LGDFLPSGSVSPTEEAGV 161 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~-~---------g-~-------~~A~~~~~~a~~-~~~~~~~~~~~p~~~~~~ 161 (398)
.+|+..|++++..+|.+++.|.. +|.. . | . ++|...|++++. +. |.+..+|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---------p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYE-AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---------KKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---------cccHHHH
Confidence 57889999999999999999877 6655 1 5 4 899999999998 68 9999999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-L 239 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 239 (398)
..+|..+...|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987 999999999999999999999999999999998888777666443 7
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|++++|+.+|+++++..|+ ++.+|..++.++...|++++|+.+|++++... ...|
T Consensus 183 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------~l~p 237 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG------------------------SLPP 237 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS------------------------SSCG
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc------------------------CCCH
Confidence 9999999999999999999 99999999999999999999999999997621 1223
Q ss_pred ---chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 320 ---IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 320 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
..++..++..+...|++++|..+++++++..|++..... ++.+ ....+.+.++|+++++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 246666889999999999999999999999998654331 1222 11125677899999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-22 Score=166.96 Aligned_cols=212 Identities=13% Similarity=0.034 Sum_probs=190.6
Q ss_pred CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 015907 114 APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP 189 (398)
Q Consensus 114 ~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 189 (398)
.|.++..+.. +|.+ .| ++.|+..|.+++... |.+..++..+|.++...|++++|+.+|++++...|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 4 ANQVSNIKTQ-LAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp CCHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 4556666655 6666 67 999999999999998 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 190 KDSTALEGAAVTLAEL-GDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
.+..++..+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+.+|++++...|. +..++..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 152 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKE 152 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHH
Confidence 9999999999999999 999999999999999 66777899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+|.++...|++++|+.++++++...+. .....+..++.++...|++++|..+++.+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEV------------------------LQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCS------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999998774320 22345556888999999999999999999
Q ss_pred HHhCCCChHHHHHH
Q 015907 347 ISSYPNDFRGYLAK 360 (398)
Q Consensus 347 l~~~p~~~~~~~~l 360 (398)
+...|+++.+...+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999998876554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-21 Score=168.40 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=183.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 78889999999999999999999999999999 7889999999999999 999999999999999985 789999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhh
Q 015907 231 LLGEVKYE----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVK 302 (398)
Q Consensus 231 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 302 (398)
.+|.++.. .+++++|+.+|++++..+ ++.++..+|.+|.. .+++++|+.+|+++.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~------------- 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD------------- 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-------------
Confidence 99999999 999999999999999874 78999999999999 9999999999999855
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 015907 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAE 374 (398)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 374 (398)
..+..++..+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+
T Consensus 143 --------------~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 143 --------------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp --------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred --------------cCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3456778889999998 99999999999999986 468999999999999 99999999
Q ss_pred HHHHHHHhhCCCChHHHHH
Q 015907 375 RMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 375 ~~~~~al~~~p~~~~~~~~ 393 (398)
.+|+++++..| +.++.+
T Consensus 207 ~~~~~a~~~~~--~~a~~~ 223 (273)
T 1ouv_A 207 ARYSKACELEN--GGGCFN 223 (273)
T ss_dssp HHHHHHHHTTC--HHHHHH
T ss_pred HHHHHHHhCCC--HHHHHH
Confidence 99999999876 555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=172.73 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=173.8
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PD 227 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 227 (398)
.|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.+|...|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 38889999999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCCHHHH-----------------HHHHHHHHHcCCchHHHH
Q 015907 228 VFRLLGEVKYE--------LKDYEGSAAAYRVSTMVSKDINFEVL-----------------RGLTNALLAAKKPDEAVQ 282 (398)
Q Consensus 228 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~-----------------~~la~~~~~~~~~~~A~~ 282 (398)
+++.+|.++.. .|++++|+..|++++...|+ +..+. +.+|.+|...|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999 99999999999999999998 65554 888999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC----------CChHHHHHHHHHHHHhCCC
Q 015907 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG----------GRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~ 352 (398)
.|++++...+.. .....+++.+|.+|..+ |++++|+..|+++++.+|+
T Consensus 170 ~~~~~l~~~p~~----------------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 170 TYEAVFDAYPDT----------------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHCTTS----------------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCC----------------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 999997754422 11235677799999877 8999999999999999999
Q ss_pred Ch---HHHHHHHHHHHHcCCHHHHH
Q 015907 353 DF---RGYLAKGIILKENGKVGDAE 374 (398)
Q Consensus 353 ~~---~~~~~la~~~~~~g~~~~A~ 374 (398)
++ .+...++.++..+++++++.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 85 56667787877777765543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=163.33 Aligned_cols=209 Identities=11% Similarity=0.101 Sum_probs=177.7
Q ss_pred CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCC-ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 015907 115 PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSP-TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP 189 (398)
Q Consensus 115 p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 189 (398)
+.+++.+.. .|.+ .| ++.|+..|.+++.+. | .+..+++.+|.++...|++++|+.+|++++..+|
T Consensus 4 ~~~~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 4 TTDPNQLKN-EGNDALNAKNYAVAFEKYSEYLKLT---------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp CCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHT---------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcc---------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence 344555555 6766 67 999999999999998 7 8889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NF 261 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~ 261 (398)
+++.++..+|.+|..+|++++|+..+++++++.|+++ .++..+|.++...|++++|+..|+++++++|+. ++
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH
Confidence 9999999999999999999999999999999999998 669999999999999999999999999999861 25
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
.++..+|.++...|+ ..+.++.. ..+.......+......+.+++|+.
T Consensus 154 ~~~~~l~~~~~~~~~-----~~~~~a~~---------------------------~~~~~~~~~~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 154 DALYSLGVLFYNNGA-----DVLRKATP---------------------------LASSNKEKYASEKAKADAAFKKAVD 201 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHGG---------------------------GTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHh---------------------------cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999977653 33444422 2223333445555666778999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHH
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
+|+++++++|++..+...++.+..
T Consensus 202 ~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 202 YLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999988887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=177.08 Aligned_cols=216 Identities=17% Similarity=0.179 Sum_probs=185.6
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
....|....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445888899999999999999999999999999994 56677899999999999999999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 223 --------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS--------KDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 223 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
|....++..+|.++...|++++|+.+|++++.+. |. ...++..+|.++...|++++|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556789999999999999999999999999874 44 567899999999999999999999999
Q ss_pred HHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh---------------
Q 015907 287 SRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS--------------- 349 (398)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------- 349 (398)
++........ ...|. .++..+|.+|...|++++|+.+|+++++.
T Consensus 179 a~~~~~~~~~-------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 179 ALEIYQTKLG-------------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHHHTSC-------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHHHhC-------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 9875432200 11233 34555999999999999999999999974
Q ss_pred ----------------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 350 ----------------------------------YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 350 ----------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3556788999999999999999999999999999875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=185.68 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=197.4
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChH----HHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE----AGVVNKELSEEEKNVLQTRLKKYEETLSI------SPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~ 197 (398)
.| ++.|+..|++++.+. |.++ .++..+|.++...|++++|+.+|++++.. .|....++..
T Consensus 61 ~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAG---------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp TTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhc---------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 67 999999999999987 7765 58899999999999999999999999987 4666789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHh
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKE------KPSDPDVFRLLGEVKYELKD-----------------YEGSAAAYRVSTM 254 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~ 254 (398)
+|.+|...|++++|+.++++++++ .|....++..+|.++...|+ +++|+.++++++.
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 45556789999999999999 9999999999988
Q ss_pred hCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHH
Q 015907 255 VSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKA 329 (398)
Q Consensus 255 ~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 329 (398)
+.+. ....++..+|.++...|++++|+.++++++...+.... .......+..+|.+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-------------------RAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-------------------cHHHHHHHHHHHHH
Confidence 6421 13458899999999999999999999999876542200 00001256669999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 330 YSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
|...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.+.++
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987754 678999999999999999999999999988654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=195.87 Aligned_cols=187 Identities=17% Similarity=0.101 Sum_probs=169.0
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETL--------SISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
..|.++.+++..+ ...|++++|+..|++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 3477777777666 67899999999999999 899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
+..+|+.+|.++...|++++|+..|+++++++|+ +..++.++|.++...|++++ +..|+++++..
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------------- 530 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN------------- 530 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------------
Confidence 9999999999999999999999999999999999 99999999999999999999 99999997632
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
.+...+++++|.++...|++++|+..|+++++++|++..+++++|.++...++
T Consensus 531 ------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 ------------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred ------------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 22245777799999999999999999999999999999999999999987666
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=182.65 Aligned_cols=234 Identities=15% Similarity=0.052 Sum_probs=198.4
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCCh----HHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCC
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTE----EAGVVNKELSEEEKNVLQTRLKKYEETLSI------SPK 190 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~ 190 (398)
.|.. .| ++.|+.+|++++.+. |.+ ..++..+|.++...|++++|+.+|++++.. .|.
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVG---------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4544 77 999999999999987 666 468899999999999999999999999876 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKD--------------------YEG 244 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 244 (398)
...++..+|.++...|++++|+.++++++++.|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46789999999999999999999999999986543 4589999999999999 999
Q ss_pred HHHHHHHHHhhC------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 245 SAAAYRVSTMVS------KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 245 A~~~~~~al~~~------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
|+.++++++.+. |. ...++..+|.++...|++++|+.++++++...+..+. ...
T Consensus 166 A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~ 225 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------KAA 225 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-------------------HHH
T ss_pred HHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-------------------cHH
Confidence 999999998872 22 3568899999999999999999999999886553311 000
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
...++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 01255669999999999999999999999887665 6789999999999999999999999999886544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-22 Score=173.99 Aligned_cols=211 Identities=11% Similarity=-0.019 Sum_probs=168.1
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPK------DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLL 232 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 232 (398)
|.++...|++++|+.+|++++.+.+. ...++..+|.+|..+|++++|+.+|++++++.|.. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788899999999999999987532 25689999999999999999999999999987643 4688999
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHhhCCCC-C----HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 233 GEVKYEL-KDYEGSAAAYRVSTMVSKDI-N----FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 233 a~~~~~~-g~~~~A~~~~~~al~~~p~~-~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
|.+|... |++++|+.+|++++.+.|.. + ..++..+|.++..+|++++|+.+|++++...+..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 193 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL---------- 193 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT----------
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc----------
Confidence 9999996 99999999999999998751 1 467899999999999999999999999875443211
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHH--HcCCHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-----GYLAKGIILK--ENGKVGDAERMFIQ 379 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~ 379 (398)
........+..+|.++..+|++++|+.+|+++++++|.... .+..++..+. ..+++++|+..|.+
T Consensus 194 --------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 194 --------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp --------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred --------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 00000124566999999999999999999999999998754 3455666664 45789999999999
Q ss_pred HHhhCCCChHHHHH
Q 015907 380 ARFFAPEKVKALVD 393 (398)
Q Consensus 380 al~~~p~~~~~~~~ 393 (398)
++.++|....++..
T Consensus 266 ~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 266 FMRLDKWKITILNK 279 (292)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 99999987766654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=165.20 Aligned_cols=199 Identities=11% Similarity=0.094 Sum_probs=163.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--
Q 015907 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-- 259 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 259 (398)
....|.++..++.+|..+...|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|++++...|+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45678899999999999999999999999999999999998 8999999999999999999999999999998851
Q ss_pred CHHHHHHHHHHHHH--------cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH
Q 015907 260 NFEVLRGLTNALLA--------AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS 331 (398)
Q Consensus 260 ~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 331 (398)
.+.+++.+|.++.. .|++++|+..|++++...+..+....... ... .........++.+|.+|.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--~~~------~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--KIR------ELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--HHH------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--HHH------HHHHHHHHHHHHHHHHHH
Confidence 36789999999999 99999999999999886654422000000 000 000000011267999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCChHHH
Q 015907 332 DGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKEN----------GKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
..|++++|+..|+++++..|++ +.+++.+|.+|..+ |++++|+..|+++++.+|+++.+.
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 9999999999999999999984 67999999999977 999999999999999999996543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=162.66 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG----------------AAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 220 (398)
.+..++..|..+...|++++|+.+|++++..+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35568889999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHhcCCCCCc
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP--DEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~ 298 (398)
++|+++.++..+|.++...|++++|+.+|+++++++|+ ++.+++.+|.+|...|+. ..+...+.++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----------- 150 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKL----------- 150 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999999999 999999999999776643 3445555443
Q ss_pred hhhhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII 363 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 363 (398)
....|. ..++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 151 ----------------~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 151 ----------------SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred ----------------hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 223332 245568888888999999999999999999964 333444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-20 Score=162.35 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc
Q 015907 132 GVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN--VLQTRLKKYEETLSISPKDSTALEGAAVTL----AEL 205 (398)
Q Consensus 132 ~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~ 205 (398)
++|+..+.+++.++ |.+..+|+.++.++...| ++++++.++..++..+|++..+|...+.++ ...
T Consensus 50 ~~aL~~t~~~L~~n---------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 50 ERALHITELGINEL---------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC---------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 45666677777777 777777777887777777 888888888888888888888888888777 666
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC----
Q 015907 206 ---GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE--GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK---- 276 (398)
Q Consensus 206 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~---- 276 (398)
+++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|. +..+|...+.++...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 67888888888888888888888888888888888777 888888888888887 88888888888877776
Q ss_pred --chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHH-HHHHHHHHHHhC---
Q 015907 277 --PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSD-AVAVYDRLISSY--- 350 (398)
Q Consensus 277 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~--- 350 (398)
++++++++.+++.. .+....+|.+++.++...|+..+ ...++.+++++.
T Consensus 200 ~~~~eEl~~~~~aI~~-------------------------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK-------------------------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred hhHHHHHHHHHHHHHh-------------------------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 77788887777552 22223566667777777777444 445666666655
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHh
Q 015907 351 PNDFRGYLAKGIILKENGKVGDAERMFIQARF-FAPEKVKALVDQ 394 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l 394 (398)
|.++.++..++.+|.+.|+.++|+++|+.+.+ .+|-....|.-+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 77788888888888888888888888888886 688887777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=178.62 Aligned_cols=231 Identities=12% Similarity=0.014 Sum_probs=192.1
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-------HHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-------STALEGAAV 200 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~ 200 (398)
.| ++.|+..|.+++.+.... ...+..+.+++.+|.++...|++++|+.+++++++..+.. ..++..+|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFV---KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 67 999999999999774221 1224567899999999999999999999999999875433 458999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCCHHHHHHHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTM-----VS-KDINFEVLRGLT 268 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~~la 268 (398)
+|..+|++++|+.++++++++.+.. ..++.++|.+|..+|++++|+.+|++++. .+ |. ...++..+|
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~ 271 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS-LPQAYFLIT 271 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHH
Confidence 9999999999999999999875533 25899999999999999999999999999 45 66 788999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCC---hHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGR---VSDAVAVY 343 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~---~~~A~~~~ 343 (398)
.++...|++++|+.++++++...+.. .+|.. .+..+|.++...|+ +.+|+.++
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKA----------------------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH----------------------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999998765422 12221 23349999999999 88888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++. ...|....++..+|.+|...|++++|..+|++++.+...
T Consensus 330 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 330 ESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 876 334445678999999999999999999999999987543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=174.31 Aligned_cols=229 Identities=15% Similarity=0.048 Sum_probs=194.3
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh----HHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE----EAGVVNKELSEEEKNVLQTRLKKYEETLSI------SPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~ 197 (398)
.| ++.|+..|++++... |.+ ..++..+|.++...|++++|+.++++++.. .|....++..
T Consensus 18 ~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG---------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC---------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 67 999999999999987 666 468889999999999999999999999877 3445678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKD--------------------YEGSAAAYRV 251 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 251 (398)
+|.++...|++++|+.++++++++.+.. ..++..+|.++...|+ +++|+.++++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999876543 3488999999999999 9999999999
Q ss_pred HHhhC------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH
Q 015907 252 STMVS------KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL 325 (398)
Q Consensus 252 al~~~------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (398)
++.+. +. ...++..+|.++...|++++|+.++++++...+.... .......+..
T Consensus 169 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~ 228 (338)
T 3ro2_A 169 NLSLVTALGDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------KAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHH
T ss_pred HHHHHHhcCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------------hHHHHHHHHH
Confidence 98762 22 3558899999999999999999999999876542210 0001125566
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.|.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876655 678999999999999999999999999987654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=151.87 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
...|++++|+.++++++...|. +..++..+|.++...|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~---------------------------------------- 125 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGR---------------------------------------- 125 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC----------------------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCc----------------------------------------
Confidence 6666666666666666666665 55555555555555444
Q ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 317 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+++|+.+++++++..|.++.++..+|.++...|++++|+.++++++.++|++.
T Consensus 126 -------------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 126 -------------------FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp -------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred -------------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 45555555555555566666666666666666666666666666666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=184.46 Aligned_cols=188 Identities=11% Similarity=-0.019 Sum_probs=168.4
Q ss_pred chhhcCCCchhhhhhhcchhhc-HHHHHHHHHHHH--------hccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHH
Q 015907 109 PIDYDAPIETEKKTIGLGTKIG-VGVAVVIFGLVF--------ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLK 179 (398)
Q Consensus 109 ~~~~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~--------~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 179 (398)
.+...+|+++..... .+...| +++|+..|.+++ ... |.+..+++.+|.++...|++++|+.
T Consensus 385 ~~p~~~p~~~~a~~~-~a~~~~~~~~A~~~~~~al~~~~~~~~~~~---------p~~~~~~~~~a~~~~~~g~~~~A~~ 454 (681)
T 2pzi_A 385 SVPLVDPTDVAASVL-QATVLSQPVQTLDSLRAARHGALDADGVDF---------SESVELPLMEVRALLDLGDVAKATR 454 (681)
T ss_dssp CCBCCCTTSTTHHHH-HHTTTCCHHHHHHHHHHHHTC-------CC---------TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCccCCCCCcchHHh-hcccccCHHHHHHHHHHhhhhccccccccc---------ccchhHHHHHHHHHHhcCCHHHHHH
Confidence 344667888877766 665588 999999999999 666 9999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 180 KYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 180 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
.|+++++.+|++..+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|+
T Consensus 455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~- 532 (681)
T 2pzi_A 455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG- 532 (681)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCC
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGR 335 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~ 335 (398)
+..+++++|.++...|++++|+..|+++ +..+|.+ ++.++|.++...++
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------------------l~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEV---------------------------PPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS---------------------------CTTSTTHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhh---------------------------cccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999887 5566664 55568988877666
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-20 Score=150.81 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=135.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 015907 149 PSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 149 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 228 (398)
......|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.++++++...|.++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp TTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+..+|.++...|++++|+.++++++...|. ++.++..+|.++...|++++|+.++++++...+
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999 999999999999999999999999999877544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=152.30 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=109.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
.+|.++...|++++|+..+++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH-HHHHHH
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF-LLASRE 289 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~-~~~a~~ 289 (398)
++|+.+|+++++++|+ ++.++..+|.++...|++++|... ++++++
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999 899999999999888888776654 456644
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-20 Score=154.62 Aligned_cols=190 Identities=8% Similarity=0.070 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD---VFR 230 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 230 (398)
.+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.+|...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356789999999999999999999999999998874 78999999999999999999999999999998864 788
Q ss_pred HHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 231 LLGEVKYE------------------LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 231 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.+|.++.. .|++++|+..|+++++..|+ +..++..+..+... ...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~----------~~~------ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFL----------KDR------ 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHH----------HHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHH----------HHH------
Confidence 99999886 46788888888888888888 65544322211100 000
Q ss_pred CCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC
Q 015907 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF---RGYLAKGIILKENGK 369 (398)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 369 (398)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|+
T Consensus 146 --------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 146 --------------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 012335689999999999999999999999999986 689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChH
Q 015907 370 VGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 370 ~~~A~~~~~~al~~~p~~~~ 389 (398)
+++|+..++++....|++.+
T Consensus 200 ~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 200 NAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHCCSCCCC
T ss_pred cHHHHHHHHHHHhhCCCchh
Confidence 99999999999999888643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=148.65 Aligned_cols=142 Identities=11% Similarity=-0.008 Sum_probs=131.8
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
||.+ .| ++.|+..+..++... |..+..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4555 67 999999999999888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA-YRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
+|...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+ ++.++..++.++...|+
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999887766 5999999999 99999999999988875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=167.51 Aligned_cols=179 Identities=9% Similarity=-0.011 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHc
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYE-------LKDYE-------GSAAAYRVSTM-VSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~la~~~~~~ 274 (398)
.++..|++++...|.++.+|..+|..+.. .|+++ +|+..|++++. ..|+ +..+|..++.++...
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhc
Confidence 56678888888888888888888888876 68876 88888888887 7888 888888888888888
Q ss_pred CCchHHHHHHHHHHHHhcCCCC------Cchhhhcccccc--ccccccccCCCchHHHH--HHHH-HHhCCChHHHHHHH
Q 015907 275 KKPDEAVQFLLASRERLSTGKS------DDLSVKDGRSGD--KKETEPQKVDPIQVELL--LGKA-YSDGGRVSDAVAVY 343 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--la~~-~~~~g~~~~A~~~~ 343 (398)
|++++|...|++++...+..+. +.+....++... ..+.+++...|.....+ .+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 8888888888888775444321 111111222222 33445555555544333 3333 34689999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+++++..|+++.+|..++.++...|+.++|..+|++++...|.++.
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9999999999999999999999999999999999999998776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-18 Score=164.49 Aligned_cols=275 Identities=13% Similarity=0.018 Sum_probs=200.3
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh-------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK-------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~-------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.++.++|+..|+++... +++..... +|.+ .+ .+.|+.+|.+++.. .++.+++.+|.++
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~-Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQS-MGDAYFEGDGVTRDYVMAREWYSKAAEQ-----------GNVWSCNQLGYMY 193 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 57788888888887654 34555544 5554 34 88888888888753 3467788888888
Q ss_pred HH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 015907 169 EE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-- 238 (398)
Q Consensus 169 ~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 238 (398)
.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCC
Confidence 87 78888888888888764 467788888888876 77888888888887765 456777888888877
Q ss_pred --ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHhcCCCC---Cchhhhcc---c
Q 015907 239 --LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA-----KKPDEAVQFLLASRERLSTGKS---DDLSVKDG---R 305 (398)
Q Consensus 239 --~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~---~ 305 (398)
.+++++|+.+|+++.+. . ++.+++.+|.+|... +++++|+.+|+++.+....... +.+....+ +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQ--G-NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTT--T-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Confidence 77888888888887765 3 677788888888777 7888888888777653111000 11111111 1
Q ss_pred ccc--ccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHH
Q 015907 306 SGD--KKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAER 375 (398)
Q Consensus 306 ~~~--~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 375 (398)
... ..+.++.......+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 111 223444445566788889999999 89999999999999885 468999999999998 899999999
Q ss_pred HHHHHHhhCCC---ChHHHHHh
Q 015907 376 MFIQARFFAPE---KVKALVDQ 394 (398)
Q Consensus 376 ~~~~al~~~p~---~~~~~~~l 394 (398)
+|+++++..|+ ++.++.++
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCCHHHHHHH
Confidence 99999999954 77766654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-18 Score=152.05 Aligned_cols=251 Identities=10% Similarity=-0.045 Sum_probs=213.3
Q ss_pred CchhHHHHHHHHHHHHHHHhH-HHHHHhhcchhhcCCCchhhhhhhcchh----h-c-HHHHHHHHHHHHhccCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKK-AEEIKEFGPIDYDAPIETEKKTIGLGTK----I-G-VGVAVVIFGLVFALGDFLPSGS 152 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~-~eA~~~~~~~~~~~p~~~~~~~~~lg~~----~-g-~~~A~~~~~~a~~~~~~~~~~~ 152 (398)
...+|.+.....+.....+.+ ++|+.++..++..+|++..+|.. .|.+ . . +++++.++..++..+
T Consensus 28 y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~-R~~~L~~l~~~~~~eeL~~~~~~L~~n------- 99 (306)
T 3dra_A 28 YDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIY-RFNILKNLPNRNLYDELDWCEEIALDN------- 99 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHC-------
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHH-HHHHHHHcccccHHHHHHHHHHHHHHC-------
Confidence 355666655555555555544 68999999999999999999988 6766 3 4 899999999999999
Q ss_pred CCCChHHHHHHHHHHH----HHh---ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCC
Q 015907 153 VSPTEEAGVVNKELSE----EEK---NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT--RAVSLLQDLAKEKP 223 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p 223 (398)
|.+..+|..++.++ ... +++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|
T Consensus 100 --Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 100 --EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred --cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 99999999999999 666 78999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHH-HHHHHHHHhcCCCC
Q 015907 224 SDPDVFRLLGEVKYELKD------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLASRERLSTGKS 296 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~ 296 (398)
.+..+|...+.++...+. ++++++++.+++..+|. +..+|+.++.++...|+..+++. +..++.....
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~---- 252 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK---- 252 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG----
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC----
Confidence 999999999999999887 99999999999999999 99999999999999998766554 4433311000
Q ss_pred CchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH-hCCCChHHHHHHHHH
Q 015907 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS-SYPNDFRGYLAKGII 363 (398)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~ 363 (398)
.......++..++.+|.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 253 ------------------~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 253 ------------------DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ------------------TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred ------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 0122335666799999999999999999999997 799999988877754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=164.13 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=168.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE----- 221 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 221 (398)
|..+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 667889999999999999999999999999987 3555779999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 222 ---KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 222 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
+|....++..+|.++...|++++|+.+|++++.+ .|. ...++..+|.++...|++++|+.++++++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-VAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666789999999999999999999999999998 565 6778999999999999999999999999876
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh------HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV------SDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
.+..... .........+..++..+...+.. .++...++......|....++..+|.+|
T Consensus 199 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 199 AHEKEFG----------------SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262 (283)
T ss_dssp HHHHHSS----------------SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCC----------------CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4422100 01122234555566666655443 3344444443334456678999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC
Q 015907 365 KENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 365 ~~~g~~~~A~~~~~~al~~~ 384 (398)
..+|++++|+.+|++++++.
T Consensus 263 ~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999998753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=170.55 Aligned_cols=266 Identities=6% Similarity=-0.018 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCC---chhhhhhhcchh-------hc-HHHHH-----------HHHH
Q 015907 82 INFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPI---ETEKKTIGLGTK-------IG-VGVAV-----------VIFG 139 (398)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~---~~~~~~~~lg~~-------~g-~~~A~-----------~~~~ 139 (398)
......+.........++.++|..++.++...-+. +.+.... ..++ .+ ...+. ..+.
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y-~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLY-YSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHH-HHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 45667788888888999999999999887553322 2222211 1111 22 33333 4444
Q ss_pred HHHhccCCCCCCCCCCChHH------HHHHHHHHHHHhccHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCC
Q 015907 140 LVFALGDFLPSGSVSPTEEA------GVVNKELSEEEKNVLQTRLKKYEETLSI---SPK---DSTALEGAAVTLAELGD 207 (398)
Q Consensus 140 ~a~~~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~ 207 (398)
.+-. . |.... .++.+|..+...|++++|+.+|++++.+ .++ .+.++..+|.+|...|+
T Consensus 89 ~i~~-~---------~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 89 EIDK-K---------QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHH-H---------THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHh-c---------CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4321 1 33322 3445999999999999999999999987 233 45789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcC
Q 015907 208 YTRAVSLLQDLAKEKPSD-------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAK 275 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~ 275 (398)
+++|+.++++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ...++.++|.+|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 999999999999985433 4589999999999999999999999999886541 1248899999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC-Cc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC--
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD-PI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY-- 350 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 350 (398)
++++|+.++++++...... .+ |. .++..+|.+|...|++++|+.++++++++.
T Consensus 239 ~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEES----------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHT----------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh----------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998865422 12 33 456669999999999999999999999874
Q ss_pred ---CCChHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 015907 351 ---PNDFRGYLAKGIILKENGK---VGDAERMFIQA 380 (398)
Q Consensus 351 ---p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 380 (398)
|.....+..+|.++...|+ +.+|+..+++.
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3334446789999999999 78888887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-19 Score=168.55 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH-------hccHH-------HHHHHHHHHHh-cCCCCHHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE-------KNVLQ-------TRLKKYEETLS-ISPKDSTALEG 197 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~p~~~~~~~~ 197 (398)
.++..|++++... |.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..
T Consensus 256 ~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 256 RVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp HHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 6778999999999 9999999999999886 68877 99999999997 79999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH-HHHcC
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDP-DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA-LLAAK 275 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~-~~~~~ 275 (398)
+|.++...|++++|...|+++++..|.++ .+|..++.++...|++++|+..|+++++..|. ....+...+.+ +...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999986 69999999999999999999999999999887 77777766655 34699
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++++|..+|+++++..+. ...++..++.++...|++++|..+|++++...|.++.
T Consensus 406 ~~~~A~~~~e~al~~~p~-------------------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGD-------------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred ChhHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 999999999999774332 2356667999999999999999999999998776654
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 356 ----GYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 356 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+|...+......|+.+.+..++.++++..|+++
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 888889999999999999999999999998533
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=165.54 Aligned_cols=233 Identities=11% Similarity=0.045 Sum_probs=192.4
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------CHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK-------DST 193 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~ 193 (398)
.|.. .| ++.|+..|.+++.+....+ ..+..+.+++.+|.++...|+++.|+.+++++++..+. ...
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVS---DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4544 67 9999999999997753222 22567789999999999999999999999999987543 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCCHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------DPDVFRLLGEVKYELKDYEGSAAAYRVSTM-----VSKDINFE 262 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~ 262 (398)
++..+|.+|...|++++|+.++++++++.+. ...++.++|.+|...|++++|+.+|++++. .+|. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 7889999999999999999999999986431 245789999999999999999999999999 6787 688
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCC---hH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGR---VS 337 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~---~~ 337 (398)
++..+|.++...|++++|+.++++++...... .++. .....++.++...++ +.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----------------------SHKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----------------------CCSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999998865533 1222 223348889999999 88
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 338 DAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 338 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
+|+.++++. ...|.....+..+|.+|...|++++|..+|+++++..
T Consensus 321 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 321 DLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888888772 2234446688899999999999999999999998764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=154.75 Aligned_cols=171 Identities=12% Similarity=0.126 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL----------------LGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 254 (398)
.++.+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG 334 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 334 (398)
++|+ ++.++..+|.++...|++++|+.+|+++++.. ++...++..+|.+|...|
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------------------------ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------CCCHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999999997632 222456777999987765
Q ss_pred C--hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 335 R--VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 335 ~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+ ...+...+.+++...| ...+++.+|.++...|++++|+.+|+++++++|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 4 4566777877764322 234788899999999999999999999999999853
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-18 Score=159.91 Aligned_cols=273 Identities=14% Similarity=0.050 Sum_probs=189.3
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh--h-----c-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--I-----G-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~-----g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.++..+|+..|+++... +++.+... +|.+ . + .+.|+.+|.++.. ..++.+++.+|.++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~-Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----------~~~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYV-LGLRYMNGEGVPQDYAQAVIWYKKAAL-----------KGLPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHH-----------CCCHHHHHHHHHHH
Confidence 45667788888877654 45555555 6655 2 3 7888888888764 34566778888888
Q ss_pred HH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 015907 169 EE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-- 238 (398)
Q Consensus 169 ~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 238 (398)
.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC
Confidence 77 77888888888888764 567888888888887 77888888888888775 467788888888887
Q ss_pred --ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCC---Cchhhh----ccc
Q 015907 239 --LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKS---DDLSVK----DGR 305 (398)
Q Consensus 239 --~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~----~~~ 305 (398)
.+++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|+++......... +.+... .++
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCC
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Confidence 788888888888887653 57778888888876 77888888888776542110000 001110 111
Q ss_pred ccc--ccccccccCCCchHHHHHHHHHHhC-----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHH
Q 015907 306 SGD--KKETEPQKVDPIQVELLLGKAYSDG-----GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG---KVGDAER 375 (398)
Q Consensus 306 ~~~--~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~ 375 (398)
... ..+.++......++...+|.+|... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.
T Consensus 275 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 275 PLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 111 2233334445556677788888777 7888888888888764 45678888888888766 7788888
Q ss_pred HHHHHHhhCCCChHHHHHh
Q 015907 376 MFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 376 ~~~~al~~~p~~~~~~~~l 394 (398)
+|+++++. +++.+++++
T Consensus 353 ~~~~a~~~--~~~~a~~~L 369 (490)
T 2xm6_A 353 WFRKAAAK--GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHH
Confidence 88888876 556666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-17 Score=146.02 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV----------LQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.++|+..+..++.++ |.+..+|...+.+....+. +++++.+++.++..+|.+..+|...+.
T Consensus 46 s~eaL~~t~~~L~~n---------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 46 DESVLELTSQILGAN---------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp SHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC---------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567888999999999 9999999999999988776 789999999999999999999999999
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc---
Q 015907 201 TLAELGD--YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD-YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA--- 274 (398)
Q Consensus 201 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--- 274 (398)
++...++ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|. +..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 9999994 8999999999999999999999999999999998 69999999999999999 999999999999877
Q ss_pred -----------CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC----------
Q 015907 275 -----------KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG---------- 333 (398)
Q Consensus 275 -----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------- 333 (398)
+.++++++++.+++...| +...+|+++..++...
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P-------------------------~d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDP-------------------------NDQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHhccCccccchHH
Confidence 457899999988866322 2245666555555444
Q ss_pred -CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 334 -GRVSDAVAVYDRLISSYPNDFRGYLAKGIILK---ENGKVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 334 -g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
+.+++++..++++++..|++...+..++.+.. ..|..++...++.+.+++||-...-|.++-+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 45899999999999999999655555544332 3578889999999999999998887776643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=138.83 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
+|..+..+..+|..++..|++++|+.+|+++++.+|.++.+|..+|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.++..+|++++|+..|+++++++|+ +..++..++.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 9999999999999999999999999 999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=159.34 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=151.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------DPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 246 (398)
++++|+.+|+++ |.+|...|++++|+..|.+++++.+. ...++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 599999999987 66788999999999999999998532 2568999999999999999999
Q ss_pred HHHHHHHhhCCCC-C----HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 247 AAYRVSTMVSKDI-N----FEVLRGLTNALLAA-KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 247 ~~~~~al~~~p~~-~----~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
.+|++++.+.|.. + ..++.++|.+|... |++++|+.+|++++.+.+.... .....
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-------------------~~~~~ 158 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-------------------VALSN 158 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-------------------hHHHH
Confidence 9999999987651 1 45889999999996 9999999999999886553210 00002
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-------GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.++..+|.++..+|++++|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|++++.++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 34566999999999999999999999999987643 67899999999999999999999999999987654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=161.44 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 194 ALEGAAVTLAELG---DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL----KDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 194 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
+++.+|.+|...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |. ++.+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG-YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-CHHHHHH
Confidence 4555555555556 666666666666666666666666666666543 46666666666665 55 5666666
Q ss_pred HHHH-H--HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC-----ChHH
Q 015907 267 LTNA-L--LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG-----RVSD 338 (398)
Q Consensus 267 la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~ 338 (398)
+|.+ + ...+++++|+.+|+++.+ .....+.+++|.+|. .| ++++
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~---------------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRA---------------------------ADQPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHH---------------------------TTCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH---------------------------CCCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 6666 3 345666666666666543 223344555555555 23 5555
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 015907 339 AVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAERMFIQARF 382 (398)
Q Consensus 339 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 382 (398)
|+.+|+++. ++++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 666655555 5555555555555544 2255555555555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=160.54 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=175.6
Q ss_pred cCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-
Q 015907 113 DAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI- 187 (398)
Q Consensus 113 ~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 187 (398)
..|.....+.. +|.+ .| ++.|+.+|.+++.+..... ....|....++..+|.++...|++++|+.+|++++..
T Consensus 22 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHN-LVIQYASQGRYEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44555555555 6655 67 8889998988887520000 0012677889999999999999999999999999987
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 188 -------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--------PSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 188 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.|....++..+|.++...|++++|+.++++++++. |....++..+|.++...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35557799999999999999999999999999874 455678999999999999999999999999
Q ss_pred Hhh--------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC------CC--------------Cchhhhcc
Q 015907 253 TMV--------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG------KS--------------DDLSVKDG 304 (398)
Q Consensus 253 l~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~--------------~~~~~~~~ 304 (398)
+.. .|. ...++..+|.++...|++++|+.++++++...+.. +. .......+
T Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 180 LEIYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHTSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 998 555 67789999999999999999999999998764321 00 00000001
Q ss_pred cccc--ccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 305 RSGD--KKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 305 ~~~~--~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
.+.. ..+.......|.. ++..+|.+|...|++++|+.+|++++++.|.
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1111 1122233344443 4455999999999999999999999998775
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=155.90 Aligned_cols=206 Identities=13% Similarity=0.020 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGA-------AVTLAELGDYTRAVSLLQDLAKEKPSD------- 225 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~------- 225 (398)
.++..|..+ ..+++..|...|.+++..+|+..++|.++ +.++...++..+++..+++.+.+.|..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 445555555 58999999999999999999999999999 899999999999999999999977653
Q ss_pred --------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 226 --------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 226 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.+++..++.++...|++++|.+.|..++...|. +. +++.+|.++...++|++|+.+|+.+..
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-- 163 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGK-- 163 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG--
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc--
Confidence 245566889999999999999999999999998 77 999999999999999999999965421
Q ss_pred cCCCCCchhhhccccccccccccccCCC---chHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHH
Q 015907 292 STGKSDDLSVKDGRSGDKKETEPQKVDP---IQVELLLGKAYSDGGRVSDAVAVYDRLISSY--PN-DFRGYLAKGIILK 365 (398)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~ 365 (398)
..+| ..+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++.
T Consensus 164 ------------------------~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 164 ------------------------WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp ------------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred ------------------------cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 1122 3578889999999999999999999998643 55 5679999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+|+.++|...|++++..+|+ +.++..+.
T Consensus 220 ~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999 88776653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=144.95 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 334456778888888888888888888888888888888888888888888888888888888888888 7766655554
Q ss_pred HHH-HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 235 VKY-ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 235 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
+.. ..++..+|+..+++++..+|+ ++.+++.+|.++...|++++|+..|+++++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------- 137 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKV----------------------- 137 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----------------------
Confidence 432 223344578888888888888 7888888888888888888777777766441
Q ss_pred cccCCC--chHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 314 PQKVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 314 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.+.+ ..++..+|.++...|+.++|+..|++++.
T Consensus 138 --~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 --NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp --CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred --CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 1111 12455566666666666666666666653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-17 Score=150.39 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=200.7
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchh-----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETE-----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~-----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
...++.++|+..+++++...|.... .+.. +|.+ .| ++.|...+.+++.+..... .......++..+|
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSV-LGEVLHCKGELTRSLALMQQTEQMARQHD---VWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 3567889999999998887765432 1222 4544 77 9999999999998761110 0011234578899
Q ss_pred HHHHHhccHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSIS--------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVFRLL 232 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l 232 (398)
.++...|++++|+..|++++... |....++..+|.++...|++++|..++++++...+.. ..++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 99999999999999999999864 3345678889999999999999999999999987652 4578899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC-C-HHHH----HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDI-N-FEVL----RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
|.++...|++++|..++++++.+.+.. . .... ..++.++...|++++|..++.++....+..
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~------------ 248 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN------------ 248 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc------------
Confidence 999999999999999999998874321 2 2221 134556889999999999997763211000
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
.......+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...++++
T Consensus 249 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 249 ---------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp ---------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0000123456999999999999999999999876443 1357889999999999999999999999
Q ss_pred HhhCC
Q 015907 381 RFFAP 385 (398)
Q Consensus 381 l~~~p 385 (398)
+.+.+
T Consensus 320 l~~~~ 324 (373)
T 1hz4_A 320 LKLAN 324 (373)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-18 Score=149.18 Aligned_cols=169 Identities=16% Similarity=0.111 Sum_probs=153.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.|.+...+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+ ....+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999997 77777778
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+..+...++.++|+..|++++.. .++..++++.+|.++...|++++|+..|++++
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~-------------------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE-------------------------NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc-------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888999999999999988662 22224567779999999999999999999999
Q ss_pred HhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 348 SSYPND--FRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 348 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
..+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999998 88999999999999999999999999885
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-17 Score=142.58 Aligned_cols=226 Identities=8% Similarity=-0.061 Sum_probs=194.3
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh---hc-----------HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-----------VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-----------~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
++|+..+..++..+|.+..+|+. .+.+ .| +..++.++..++..+ |.+..+|...+.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~-Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~---------PKny~aW~hR~w 116 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNC-RREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------PKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHH-HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Confidence 57899999999999999999987 6666 22 367899999999999 999999999999
Q ss_pred HHHHhcc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 015907 167 SEEEKNV--LQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL---- 239 (398)
Q Consensus 167 ~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 239 (398)
++...+. +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 9999984 9999999999999999999999999999999999 69999999999999999999999999999887
Q ss_pred ----------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc-----------CCchHHHHHHHHHHHHhcCCCCCc
Q 015907 240 ----------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA-----------KKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 240 ----------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
+.++++++++.+++..+|+ +..+|+.+..++... +.++++++.+.++++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--------- 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--------- 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---------
Confidence 5689999999999999999 999998776666554 346788888887754
Q ss_pred hhhhccccccccccccccCCCchHHHHHHHHH-----HhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAY-----SDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
..|+..|..++.+. ...|..++...++.++++++|-...-|..++.-+
T Consensus 267 ------------------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 267 ------------------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp ------------------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ------------------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 55666666644433 2467889999999999999998877777666544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=139.32 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHH
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK----DYEGSAAAYR 250 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 250 (398)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578889998875 78999999999999999999999999999875 578999999999998 7 9999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC----chH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP----IQV 322 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 322 (398)
++.+ +. ++.+++.+|.+|.. .+++++|+.+|+++ ....+ ..+
T Consensus 78 ~A~~--~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A---------------------------~~~~~~~~~~~a 127 (212)
T 3rjv_A 78 KAVE--AG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDA---------------------------ARDSESDAAVDA 127 (212)
T ss_dssp HHHH--TT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH---------------------------TSSTTSHHHHHH
T ss_pred HHHH--CC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH---------------------------HHcCCCcchHHH
Confidence 9966 45 89999999999987 89999999999988 44556 577
Q ss_pred HHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCChHHHH
Q 015907 323 ELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-G-----KVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 323 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+..+|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++.+........++
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l 206 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF 206 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8889999999 88999999999999997 77888999999999875 3 899999999999998765555554
Q ss_pred Hhh
Q 015907 393 DQY 395 (398)
Q Consensus 393 ~l~ 395 (398)
...
T Consensus 207 ~~l 209 (212)
T 3rjv_A 207 DRI 209 (212)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=164.36 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=133.2
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAY 330 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 330 (398)
++++.+|+ +..++..+|.++...|++++|+..|+++++.. .+...++..+|.++
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------------------------PEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999986632 22235666799999
Q ss_pred HhC---CChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 331 SDG---GRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 331 ~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
... |++++|+..|+++++.+|.+...+..++
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999 9999999999999999999988888777
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-18 Score=149.24 Aligned_cols=170 Identities=12% Similarity=0.063 Sum_probs=155.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999977777777778
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
.+...++.++|+..|++++..+|+ ++.+++.+|.++...|++++|+..|.++++..+..
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-------------------- 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-------------------- 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG--------------------
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc--------------------
Confidence 888999999999999999999999 99999999999999999999999999997632211
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
....++..++.++...|+.++|...|++++.
T Consensus 253 ---~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 253 ---ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 1134677799999999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=140.65 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=142.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
+|...+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...| ++..+..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHH
Confidence 3455567889999999999999999999999999999999999999999999999999999999999998 46666555
Q ss_pred HHHHH-HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 268 TNALL-AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 268 a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+.+.. ..+...+|+..+++++... ++...+++.+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~-------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAAN-------------------------PDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 54432 3345556899998886632 222456777999999999999999999999
Q ss_pred HHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 347 ISSYPND--FRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 347 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
++.+|+. ..++..+|.++..+|+.++|+..|++++.
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999976 56999999999999999999999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-18 Score=163.90 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLL 285 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~ 285 (398)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|+ +..++..+|.++...|++++|+.+|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555556666665555555555555666665566666666666666665555 55555566666666666666666655
Q ss_pred HHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 286 ASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
++++.. .+...++..+|.+|...|++++|+.+|+++++.+|++..++..+|.++.
T Consensus 82 ~al~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 82 QASDAA-------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 554421 1112344445555666666666666666666555555555556666665
Q ss_pred Hc---CCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 366 EN---GKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 366 ~~---g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
.+ |++++|+..|+++++.+|++...+.
T Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HhhccccHHHHHHHHHHHHhcCCcccChHH
Confidence 55 5556666666666655555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-19 Score=138.18 Aligned_cols=108 Identities=10% Similarity=0.017 Sum_probs=60.1
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
....|.++.+++.+|.++...|++++|+.+|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+|+
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+|.+|..+|++++|+.+|++++++.|+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=135.04 Aligned_cols=126 Identities=12% Similarity=0.043 Sum_probs=117.1
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
+...+++-.+-..|++++.++|+++.+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++..+|++++|+.
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 34445555566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
+|++++.++|+ ++.+|+++|.+|..+|++++|+..|+++++..+..
T Consensus 92 ~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 92 LYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999 99999999999999999999999999999876643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=153.00 Aligned_cols=272 Identities=8% Similarity=0.021 Sum_probs=197.0
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCC---chhhhhhhcchh-------hc-HHHHH---------HHHHH
Q 015907 81 DINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPI---ETEKKTIGLGTK-------IG-VGVAV---------VIFGL 140 (398)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~---~~~~~~~~lg~~-------~g-~~~A~---------~~~~~ 140 (398)
.......|.........++..+|..+++++....+. +...... .++. .+ ...+. ..+..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y-y~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIY-YSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHH-HHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 345667777778888889999999988876443221 2222211 1111 11 11111 33333
Q ss_pred HHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 015907 141 VFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP------KDSTALEGAAVTLAELGDYTRAVSL 214 (398)
Q Consensus 141 a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~ 214 (398)
+-.... ..........++.+|..+...|++++|+.+|++++...+ ..+.++..+|.+|...|++++|+.+
T Consensus 88 i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 88 IETPQK----KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHGGGH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccCC----CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 321110 000001123567789999999999999999999998742 2356899999999999999999999
Q ss_pred HHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHH
Q 015907 215 LQDLAKEKPS-------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQ 282 (398)
Q Consensus 215 ~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~ 282 (398)
+++++++.+. ...++..+|.++...|++++|+.+|++++.+.+. ....++.++|.++...|++++|+.
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999987543 2457889999999999999999999999987432 124578999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-----ChH
Q 015907 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN-----DFR 355 (398)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~ 355 (398)
++++++...... .+| ..++..+|.++...|++++|+.++++++++.+. ...
T Consensus 244 ~~~~al~~~~~~----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 244 HFQKAAKVSREK----------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHH----------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHhh----------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998754321 222 345566999999999999999999999998543 345
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHH
Q 015907 356 GYLAKGIILKENGK---VGDAERMFIQ 379 (398)
Q Consensus 356 ~~~~la~~~~~~g~---~~~A~~~~~~ 379 (398)
.+..++.++...|+ +.+|+.++++
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 66788888888888 8888888776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=150.15 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHH
Q 015907 157 EEAGVVNKELSEEEKN---VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL----GDYTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~ 229 (398)
++.+++.+|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.++.++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 3448999999999999 999999999999999999999999999999766 79999999999998 8899999
Q ss_pred HHHHHH-H--HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 230 RLLGEV-K--YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK-----KPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 230 ~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
+.+|.+ + ...+++++|+.+|+++.+.+ ++.+++.+|.+|. .| ++++|+.+|+++
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A-------------- 313 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA-------------- 313 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT--------------
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH--------------
Confidence 999998 4 46899999999999998754 7999999999998 55 999999999887
Q ss_pred hccccccccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHH
Q 015907 302 KDGRSGDKKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDA 373 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 373 (398)
. .....+.+++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++.+|
T Consensus 314 -------------a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 314 -------------V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp -------------T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred -------------h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 3 2334677779999987 4599999999999986 5678899999999985 4689999
Q ss_pred HHHHHHHHhhCCCChHHHHH
Q 015907 374 ERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 374 ~~~~~~al~~~p~~~~~~~~ 393 (398)
..+|+++.+..+......+.
T Consensus 378 ~~~~~~A~~~g~~~a~~~l~ 397 (452)
T 3e4b_A 378 YVFSQLAKAQDTPEANDLAT 397 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999877655444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-18 Score=128.82 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
++|+.++++..+|..|+..|+|++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+ ++.+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444 4444444
Q ss_pred HHHHHHHcCCchHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~ 284 (398)
+|.++..+|++++|+..|
T Consensus 87 lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAY 104 (126)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444443333333333333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=147.80 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=156.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--D----PDVFRL 231 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~ 231 (398)
.|.++...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+. + ..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3667888999999999999999886533 458899999999999999999999999998532 2 467889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
+|.+|.. |++++|+.+|++++.+.|.. ...++.++|.++..+|++++|+.+|++++...+....
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 190 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------- 190 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------
Confidence 9999998 99999999999999987651 1568899999999999999999999999886543310
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHcCCHHHHHHH--HHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-----GYLAKGIILKENGKVGDAERM--FIQ 379 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~--~~~ 379 (398)
.......+..+|.++...|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+... +..
T Consensus 191 ---------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~ 259 (307)
T 2ifu_A 191 ---------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPL 259 (307)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHH
T ss_pred ---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCch
Confidence 00011245558999999999999999999999 9997643 344555555 56776555442 233
Q ss_pred HHhhCCCC
Q 015907 380 ARFFAPEK 387 (398)
Q Consensus 380 al~~~p~~ 387 (398)
+..++|..
T Consensus 260 ~~~ld~~~ 267 (307)
T 2ifu_A 260 VTYMDNDY 267 (307)
T ss_dssp HHTSCHHH
T ss_pred hhhhhHHH
Confidence 44444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=145.63 Aligned_cols=226 Identities=13% Similarity=0.105 Sum_probs=168.7
Q ss_pred HHHHHHhhcchhhcC-CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 100 KAEEIKEFGPIDYDA-PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 100 ~~eA~~~~~~~~~~~-p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
+.+|++.+.++...+ |.....+.. +|.+ .| ++.|+..|.+++.+..... ....|....++..+|.++...|++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNI-LALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhccH
Confidence 345666666666544 555566655 7777 77 9999999999997631110 012267788999999999999999
Q ss_pred HHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Q 015907 175 QTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--------KPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 175 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 238 (398)
++|+.+|++++.. +|....++..+|.++...|++++|+.+++++++. .|....++..+|.++..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999988 4666789999999999999999999999999998 66667899999999999
Q ss_pred ccCHHHHHHHHHHHHhh---------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccc
Q 015907 239 LKDYEGSAAAYRVSTMV---------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~---------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
.|++++|+.+|++++.+ .+. ....+..++..+...+....+..+ ..+.......
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------- 244 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGD-NKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKAC--------------- 244 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSS-CCCHHHHHHHHHHTTCCCCC-------------CC---------------
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhc---------------
Confidence 99999999999999987 333 455777777777766665544443 2222211111
Q ss_pred cccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 310 KETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 310 ~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
....|. .++..+|.+|...|++++|+.+|+++++.
T Consensus 245 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 -----KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122233 34555999999999999999999999875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=150.58 Aligned_cols=198 Identities=9% Similarity=0.048 Sum_probs=155.4
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..++.+|..+...|++++|+..|++++..+|+++.++..+|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++..+|++++|+..|++++.++|+ +...+......... ..++..+......
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------------- 131 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNSIEER------------------------- 131 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHHHHHT-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHHHHHH-------------------------
Confidence 999999999999999999999886 43221111111111 1112222211111
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-GKVGDAERMFIQARFF 383 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 383 (398)
.......+...++..+ .|++++|+..++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 132 ~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1111223444466554 68999999999999999999988888888888776 7789999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=143.84 Aligned_cols=231 Identities=14% Similarity=0.004 Sum_probs=184.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~ 201 (398)
.| ++.|...+.+++... +.. .......++..+|.++...|++++|+..+++++...|... .++..+|.+
T Consensus 27 ~g~~~~A~~~~~~al~~~---~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEEL---PPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp TTCHHHHHHHHHHHHHTC---CTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 67 999999999998765 100 0001224678899999999999999999999998765432 347889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----CHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEK--------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI----NFEVLRGLTN 269 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~la~ 269 (398)
+...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...+.. ...++..+|.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 999999999999999999864 2335677889999999999999999999999987652 2457889999
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH----HHHHHHHhCCChHHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL----LLGKAYSDGGRVSDAVAVYDR 345 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~ 345 (398)
++...|++++|..+++++....... ..+..... .++.++...|++++|..++++
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNG----------------------KYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTS----------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcc----------------------CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999998754321 11111111 245568899999999999999
Q ss_pred HHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 346 LISSYPND----FRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 346 al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
++...|.. ...+..++.++...|++++|...+++++...+
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 98876653 23578899999999999999999999987754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=139.41 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-C
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN-VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL-G-D 207 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-~ 207 (398)
.++|+.++.+++.++ |.+..+|..++.++...| .+++++.++++++..+|++..+|...+.++... + +
T Consensus 70 se~AL~lt~~~L~~n---------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 70 SERALELTEIIVRMN---------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp SHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC
T ss_pred CHHHHHHHHHHHHhC---------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC
Confidence 356777888899888 999999999999999999 599999999999999999999999999999998 8 9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC---
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE--------GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK--- 276 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~--- 276 (398)
+++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|. +..+|...+.++...+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999988887 999999999999999 99999999999999887
Q ss_pred ----chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh----------------
Q 015907 277 ----PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV---------------- 336 (398)
Q Consensus 277 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------- 336 (398)
++++++++.+++... .....+|.++..++...|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~-------------------------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-------------------------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred chHHHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 689999998886632 22245676677777776654
Q ss_pred ----HHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChHHHHHh
Q 015907 337 ----SDAVAVYDRLISSY------PNDFRGYLAKGIILKENGKVGDAERMFIQAR-FFAPEKVKALVDQ 394 (398)
Q Consensus 337 ----~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l 394 (398)
.+-.......+... +..+.++..++.+|...|+.++|.++|+... +.||-...-|.-+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 22222222222222 4567889999999999999999999999987 6788777666544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=149.11 Aligned_cols=199 Identities=9% Similarity=0.068 Sum_probs=158.8
Q ss_pred HhccHHHHHHHHHHHHhcCC--------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISP--------KD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLL 232 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 232 (398)
..|++++|..+++++.+..+ +. ...+...|.+|...|++++|+..|.+++++.+.. ..++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677778777777765432 11 1255666889999999999999999999986532 4588999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
|.+|..+|++++|+.+|++++.+.+.. ...++.++|.+|.. |++++|+.+|++++.+.+....
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~----------- 150 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER----------- 150 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-----------
Confidence 999999999999999999999885421 24578999999998 9999999999999886553210
Q ss_pred cccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 308 DKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
......++..+|.+|..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++
T Consensus 151 --------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 151 --------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred --------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 00012456669999999999999999999999986654 3478899999999999999999999999
Q ss_pred hhCCCChH
Q 015907 382 FFAPEKVK 389 (398)
Q Consensus 382 ~~~p~~~~ 389 (398)
++|+...
T Consensus 223 -~~p~~~~ 229 (307)
T 2ifu_A 223 -SIPGFSG 229 (307)
T ss_dssp -TSTTSTT
T ss_pred -CCCCCCC
Confidence 9997653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=151.76 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=155.3
Q ss_pred hHHHHHHhhcc----hhhcCCCchhhhhhhcch---------------hhc-HHHHHHHHHHHHhccCCCCCCCCCCChH
Q 015907 99 KKAEEIKEFGP----IDYDAPIETEKKTIGLGT---------------KIG-VGVAVVIFGLVFALGDFLPSGSVSPTEE 158 (398)
Q Consensus 99 ~~~eA~~~~~~----~~~~~p~~~~~~~~~lg~---------------~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~ 158 (398)
.+++|+..+.. .+...|.. ++.. .|. .++ ++.|+..|..++... |..+
T Consensus 80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~-~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~---------p~~a 147 (336)
T 1p5q_A 80 GLERAIQRMEKGEHSIVYLKPSY--AFGS-VGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEK---------LEQS 147 (336)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTT--TTTT-TCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHH---------HHHH
T ss_pred HHHHHHhcCCCCCeEEEEECCcc--ccCc-CCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHH---------HHHH
Confidence 45668888888 77777765 2222 221 123 556666666666666 8889
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
.++..+|.+++..|++++|+.+|++++.+.|.+ ..++.++|.+|..+|++++|+.+|+++++++|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHh
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA-VQFLLASRERL 291 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~ 291 (398)
+++.+++.+|.++..+|++++|+..|+++++++|+ +..++..++.++...|++++| ...|.++...+
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 999999999999999999999 45676665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-18 Score=131.94 Aligned_cols=118 Identities=8% Similarity=0.071 Sum_probs=108.8
Q ss_pred HHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 136 VIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL 215 (398)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 215 (398)
..|.+++.+. |.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|
T Consensus 8 ~~~~~al~~~---------p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 8 GTIAMLNEIS---------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CSHHHHTTCC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcCC---------HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3466777777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHH
Q 015907 216 QDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 216 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
++++.++|+++.+++.+|.++...|++++|+..|+++++++|+ ++..
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 125 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN-XPEF 125 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CGGG
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CCcc
Confidence 9999999999999999999999999999999999999999887 6654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=135.08 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=135.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE---EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---ALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~ 201 (398)
.| ++.|+..|++++... |.. ..+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.+
T Consensus 17 ~g~~~~A~~~~~~~~~~~---------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRY---------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HTCHHHHHHHHHHHHHHC---------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 66 888888888888766 543 578999999999999999999999999999999864 78999998
Q ss_pred HHH------------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHccCHHHHH
Q 015907 202 LAE------------------LGDYTRAVSLLQDLAKEKPSDPDVF-----------------RLLGEVKYELKDYEGSA 246 (398)
Q Consensus 202 ~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~ 246 (398)
+.. .|++++|+..|+++++..|+++.++ ..+|.+|...|++++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 876 5789999999999999999886544 57889999999999999
Q ss_pred HHHHHHHhhCCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 247 AAYRVSTMVSKDINF---EVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 247 ~~~~~al~~~p~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
..|+++++..|+ ++ .++..+|.++..+|++++|+..++.+....+
T Consensus 168 ~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 168 NRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 999999999998 65 6899999999999999999999988765433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-16 Score=135.68 Aligned_cols=257 Identities=9% Similarity=-0.019 Sum_probs=203.3
Q ss_pred CchhHHHHHHHHHHHHHHH-hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc--HHHHHHHHHHHHhccCCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQ-KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG--VGVAVVIFGLVFALGDFLPSGSV 153 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~-~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g--~~~A~~~~~~a~~~~~~~~~~~~ 153 (398)
...+|.+...-.+.....+ ..++|+..+..++..+|.+..+|.. .+.+ .| ++.++.++..++..+
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~-R~~iL~~l~~~l~eEL~~~~~~L~~n-------- 119 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQY-RFSLLTSLNKSLEDELRLMNEFAVQN-------- 119 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCCHHHHHHHHHHHHHTT--------
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHhC--------
Confidence 4556655555544444333 3468999999999999999999988 7766 45 899999999999999
Q ss_pred CCChHHHHHHHHHHHHHh-c-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCC
Q 015907 154 SPTEEAGVVNKELSEEEK-N-VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT--------RAVSLLQDLAKEKP 223 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p 223 (398)
|.+..+|..++.++... + ++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|
T Consensus 120 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 120 -LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred -CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 99999999999999998 8 8999999999999999999999999999999999888 99999999999999
Q ss_pred CCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH----------------H
Q 015907 224 SDPDVFRLLGEVKYELKD-------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE----------------A 280 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~----------------A 280 (398)
.+..+|...+.++...+. ++++++++.+++..+|. +..+|..+..++...|+... .
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 999999999999999887 79999999999999999 99999999999988877511 0
Q ss_pred H-HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH-HhCCCChHHHH
Q 015907 281 V-QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI-SSYPNDFRGYL 358 (398)
Q Consensus 281 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 358 (398)
. ....-+....... -..........+...++.+|...|+.++|+.+|+.+. +.+|-....|.
T Consensus 278 ~~~~~~~~~~~~~~~----------------~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 278 IETVEAFGFPMPSDP----------------LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp --------CCCCC-C----------------CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred chhHHHHHHHHHhcc----------------cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 0 0000011100000 0000112222455559999999999999999999987 56787777777
Q ss_pred HHHHH
Q 015907 359 AKGII 363 (398)
Q Consensus 359 ~la~~ 363 (398)
..+..
T Consensus 342 ~~~~~ 346 (349)
T 3q7a_A 342 FRRRE 346 (349)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-19 Score=160.51 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=150.2
Q ss_pred hccHHHHHHHHHH----HHhcCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEE----TLSISPKDSTALEGAAVTLA------------ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 171 ~g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
.+.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..+++++...|....++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4466777777776 66666665 3434443322 4567777888888888888888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCC---------------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDIN---------------FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
++...|++++|+..|++++.+.|. + ..++.++|.++...|++++|+.+|++++...+
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------- 227 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS------- 227 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Confidence 888888888888888888888888 6 68999999999999999999999999977322
Q ss_pred hhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH-HHHHH
Q 015907 300 SVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDA-ERMFI 378 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 378 (398)
+...+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|+
T Consensus 228 ------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 228 ------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456777999999999999999999999999999999999999999999999999 55677
Q ss_pred HHHhh
Q 015907 379 QARFF 383 (398)
Q Consensus 379 ~al~~ 383 (398)
+++..
T Consensus 290 ~~~~~ 294 (336)
T 1p5q_A 290 NMFER 294 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-16 Score=118.63 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.|++++|+..+++++...|. +..++..+|.++...|++++|+.++.+++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999 89999999999999999999999999987643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=128.88 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
+...|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
|+ ++.+++.+|.++...|++++|+.+|+++++..+..
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99 99999999999999999999999999998865543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=120.59 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..|..+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhC------CCCCHHHHHHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVS------KDINFEVLRGLTNALLA 273 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~la~~~~~ 273 (398)
++...|++++|+..|++++.++ |. +..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHHHh
Confidence 9999999999999999999999 88 88888888877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=128.25 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.+...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
++...|++++|+.+|++++.++|+ ++.......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 127 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAA-QPAHEALAA 127 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT-CGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CcchHHHHH
Confidence 999999999999999999999987 665544433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-16 Score=129.89 Aligned_cols=186 Identities=11% Similarity=-0.028 Sum_probs=157.8
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG----DY 208 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~ 208 (398)
+|..+|.++.. ..++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++
T Consensus 4 eA~~~~~~aa~-----------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 4 EPGSQYQQQAE-----------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp CTTHHHHHHHH-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCH
T ss_pred hHHHHHHHHHH-----------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCH
Confidence 46667777764 457889999999999999999999999999875 689999999999998 7 99
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHH----cCCchH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLA----AKKPDE 279 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~----~~~~~~ 279 (398)
++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..|. .++.+++.||.+|.. .+++++
T Consensus 70 ~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 70 PQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999965 5689999999999998 88999999999999998872 048999999999999 899999
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHhCCCC
Q 015907 280 AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG-G-----RVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 280 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~ 353 (398)
|+.+|+++... .....+.+++|.+|... | ++++|+.+|+++.+.. +
T Consensus 148 A~~~~~~A~~~--------------------------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL--------------------------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--F 199 (212)
T ss_dssp HHHHHHHHHHT--------------------------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--C
Confidence 99999998652 12345778899999764 3 8999999999999864 4
Q ss_pred hHHHHHHHH
Q 015907 354 FRGYLAKGI 362 (398)
Q Consensus 354 ~~~~~~la~ 362 (398)
..+...++.
T Consensus 200 ~~A~~~l~~ 208 (212)
T 3rjv_A 200 DTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=141.95 Aligned_cols=197 Identities=13% Similarity=0.040 Sum_probs=169.7
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH-------HHHHHHhccHHHHHHHHHHHHhcCCCCH--------
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK-------ELSEEEKNVLQTRLKKYEETLSISPKDS-------- 192 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------- 192 (398)
.+ ...|...|.+++.++ |..+.+|..+ +.++...+++.+++..+++.+.+.|...
T Consensus 19 ~~d~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred CCCHHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 45 788999999999999 9999999999 8999999999999999999999877653
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 193 -------------TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 193 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
+++..++.++...|+|++|.+.|..++...|++. +++.+|.++...+++++|+.+|+.+....+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 3455588999999999999999999999999888 99999999999999999999999887653220
Q ss_pred C-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---hHHHHHHHHHHhCCC
Q 015907 260 N-FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI---QVELLLGKAYSDGGR 335 (398)
Q Consensus 260 ~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 335 (398)
. ..+++.+|.++..+|++++|+.+|+++.. ...+|. ++.+++|.++..+|+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-------------------------g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEAND-------------------------SPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------------------------STTTTTTHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-------------------------CCCCccccHHHHHHHHHHHHHcCC
Confidence 1 35899999999999999999999998853 111133 577889999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
.++|...|++++..+|+ ..++..|.
T Consensus 224 ~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 224 ESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999999 77766654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-15 Score=152.18 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=168.6
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
..+.++||..+|++.. .+..+... +-...| ++.|..++.+ ...+.+|+.+|.++...|++
T Consensus 1061 ~lglyEEAf~IYkKa~----~~~~A~~V-Lie~i~nldrAiE~Aer--------------vn~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD----VNTSAVQV-LIEHIGNLDRAYEFAER--------------CNEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred hCCCHHHHHHHHHHcC----CHHHHHHH-HHHHHhhHHHHHHHHHh--------------cCCHHHHHHHHHHHHhCCCH
Confidence 3456677777777652 12222111 111145 6666666664 35577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+..|.++ +++..|..+|.++.+.|+|++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|.
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI---- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI---- 1190 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----
Confidence 9999999875 78889999999999999999999999998887744 2333458888888888774 33332
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG 334 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 334 (398)
..+ +...+..+|..+...|+|++|..+|.++ ..|..+|.+|..+|
T Consensus 1191 ~~~--n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------------------------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1191 NGP--NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------------------SNFGRLASTLVHLG 1235 (1630)
T ss_pred hCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------------------------hHHHHHHHHHHHhC
Confidence 133 4566677888888888888888888665 24555777777777
Q ss_pred ChHHHHHHHHHHHHhCC-------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 335 RVSDAVAVYDRLISSYP-------------------------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 335 ~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
++++|++.++++....+ .+++.+..++..|...|.+++|+.++++++.++|.+..
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 77777777777643221 13445567888899999999999999999999998877
Q ss_pred HHHH
Q 015907 390 ALVD 393 (398)
Q Consensus 390 ~~~~ 393 (398)
.+..
T Consensus 1316 mftE 1319 (1630)
T 1xi4_A 1316 MFTE 1319 (1630)
T ss_pred HHHH
Confidence 7743
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-16 Score=122.81 Aligned_cols=135 Identities=9% Similarity=0.068 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHH--HHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRG--LTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
...|++++|+.+|++++..+|. +..++.. ++..+...|++++|+..+.+......
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9999999999999999999999 8888854 44558889999999999998876554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-16 Score=124.56 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=111.2
Q ss_pred CCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 152 SVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 152 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
...+..+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+..|+++++++|++..+|+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34477889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
+|.++..+|++++|+.+|++++.++|+ +..++...+...
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~ 123 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGN-GGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 999999999999999999999999999 777766666443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=115.66 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
++.+|.++...|++++|+..+++++...|. +..++..+|.++...|++++|+.+++++....
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 444444444444455555555444444444 44444444555444455555555544443311
Q ss_pred ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 309 KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
......+..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+.++++++..+|+
T Consensus 66 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 --------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 1111233335555555666666666666666666666666666777777777777777777777666664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-16 Score=118.55 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=118.4
Q ss_pred CCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 152 SVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 152 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
...|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+++++++..|.+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 34478889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
+|.++...|++++|+.+|++++..+|. +..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 89999999999987764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-16 Score=117.07 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=118.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
++...|++++|+.+|++++..+|+ +..++..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 9999999999999988763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-17 Score=154.34 Aligned_cols=185 Identities=11% Similarity=0.038 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--C
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGD----------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK--D 241 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~ 241 (398)
.++|+..+.+++..+|++..+|+..+.++...|+ +++++..++++++.+|++..+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3678999999999999999999999999999998 999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK-KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
++++++++.++++.+|. +..+|...+.++...| .++++++++.++ +..+|.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~---------------------------I~~~p~ 176 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSL---------------------------ITRNFS 176 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTT---------------------------TTTTCC
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHH---------------------------HHHCCC
Confidence 79999999999999999 9999999999999999 899999999777 445555
Q ss_pred --hHHHHHHHHHHhC--------------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH------------
Q 015907 321 --QVELLLGKAYSDG--------------GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGD------------ 372 (398)
Q Consensus 321 --~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------ 372 (398)
.+|.+++.++... +.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEAC 256 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTE
T ss_pred CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCce
Confidence 4666688887664 568999999999999999999999999999999988766
Q ss_pred HHHHHHHHHhhCCC
Q 015907 373 AERMFIQARFFAPE 386 (398)
Q Consensus 373 A~~~~~~al~~~p~ 386 (398)
|+..|.+++.++|.
T Consensus 257 ~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 257 LSVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEEECTTBT
T ss_pred EEEEeccceecccc
Confidence 55556666666665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=122.56 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 259 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
++.+++.+|.++...|++++|+.+|++++...+..
T Consensus 85 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 85 -EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998865533
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=133.99 Aligned_cols=175 Identities=12% Similarity=0.075 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---C-
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---N- 260 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~- 260 (398)
....+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+.+|++++...+.. .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344566778889999999999999999999887654 345678888999999999999999999875541 1
Q ss_pred -HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHHHHHHhCCChHH
Q 015907 261 -FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSD 338 (398)
Q Consensus 261 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~ 338 (398)
..++..+|.+|...|++++|+.+|++++......+. ..... .++.++|.+|..+|++++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-------------------~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------------------NEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-------------------CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-------------------cccchHHHHHhHHHHHHHHhhHHH
Confidence 568999999999999999999999999865432211 00001 466679999999999999
Q ss_pred HHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 015907 339 AVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDA-ERMFIQARFFA 384 (398)
Q Consensus 339 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 384 (398)
|+.++++++++.+. ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 215 Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999987543 267899999999999999999 88899998753
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-15 Score=129.02 Aligned_cols=175 Identities=11% Similarity=-0.029 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD--- 225 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 225 (398)
|.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..++++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 45556677889999999999999999999999887764 346778899999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 226 ---PDVFRLLGEVKYELKDYEGSAAAYRVST---MVSKDINF----EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 226 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
..++..+|.+|...|++++|+.+|++++ ...|+ +. .++.++|.+|..+|++++|+.++++++.......
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 44554 33 5889999999999999999999999988653220
Q ss_pred CCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH-HHHHHHHHHh
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA-VAVYDRLISS 349 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 349 (398)
. ...-..++..+|.+|..+|++++| ..+|++++.+
T Consensus 231 ~-------------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 S-------------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp B-------------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred c-------------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 0 111135667799999999999999 8889999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=116.49 Aligned_cols=112 Identities=10% Similarity=0.127 Sum_probs=99.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PD 227 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 227 (398)
++.+.++..+|..++..|++++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34566888999999999999999999999999999999999999999999999999999999999998765 35
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
++..+|.++..+|++++|+.+|++++...|+ ++....+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~ 123 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHH
Confidence 7889999999999999999999999999886 55554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=133.74 Aligned_cols=173 Identities=9% Similarity=-0.051 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|.++..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+ +..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.++...|++++|+..|++++...+..+. .. ...+ +... ...++..+......
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~-------------------~~-~~~~--~~~~------~~~~~~~~~~~~~~ 131 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRL-------------------NF-GDDI--PSAL------RIAKKKRWNSIEER 131 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------CC-CSHH--HHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchh-------------------hH-HHHH--HHHH------HHHHHHHHHHHHHH
Confidence 9999999999999999999886654321 00 1111 1111 12223333334445
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 349 SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 349 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
..|.+..+...++.++ .|++++|++.++++++++|++.....
T Consensus 132 ~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~ 173 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRA 173 (281)
T ss_dssp CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTH
T ss_pred HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhh
Confidence 6778888888887765 69999999999999999998765443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-15 Score=124.28 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....++.+|..+...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34467889999999999999999999986 33 7889999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCH----------------HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINF----------------EVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
...|++++|+..|++++...|. +. .++..+|.++...|++++|+..|++++..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999998887 55 89999999999999999999999998653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-15 Score=130.75 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=128.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-C----HHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPD------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-N----FEVLR 265 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~ 265 (398)
..+..+...|++++|+..++++++..+..+. .+..+|.++...+++++|+.+|++++...+.. + ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456667777888888888877776665544 23357788888888888888888888864431 1 33688
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDR 345 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 345 (398)
++|.+|...|++++|+.+|+++++.....+. .......++.++|.+|..+|++++|+.++++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHD------------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999998875432211 0011123566799999999999999999999
Q ss_pred HHHhCCCC------hHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 015907 346 LISSYPND------FRGYLAKGIILKENGK-VGDAERMFIQARFFA 384 (398)
Q Consensus 346 al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 384 (398)
++++.+.. ..+++++|.+|..+|+ +++|+.+|++++.+.
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99875433 7899999999999995 699999999999763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=129.77 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS----------------TALEGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~a 218 (398)
+.....+..+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45667889999999999999999999999999999887 89999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 219 AKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 219 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
++++|.+..+++.+|.++..+|++++|+.+|++++.++|+ +..++..++.++...++..++.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999999888877766
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=148.85 Aligned_cols=187 Identities=8% Similarity=-0.011 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV----------LQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.++|+..+.+++.++ |.+..+|+.++.++...|+ +++++.+++++++.+|++..+|+..+.
T Consensus 45 ~eeal~~~~~~l~~n---------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 45 DESVLELTSQILGAN---------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (567)
T ss_dssp SHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC---------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467888899999999 9999999999999999998 999999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc---
Q 015907 201 TLAELG--DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK-DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA--- 274 (398)
Q Consensus 201 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--- 274 (398)
++...+ +++++++++.++++.+|.+..+|...+.++...| .++++++++.++++.+|. +..+|..++.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 999999 7799999999999999999999999999999999 999999999999999999 999999999999875
Q ss_pred -----------CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHH-----
Q 015907 275 -----------KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSD----- 338 (398)
Q Consensus 275 -----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----- 338 (398)
+.++++++++.+++... ++...+|++++.++...+++++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~-------------------------P~~~saW~y~~~ll~~~~~~~~~~~~~ 249 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD-------------------------PNDQSAWFYHRWLLGRAEPHDVLCCVH 249 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC-------------------------SSCSHHHHHHHHHHSCCCCCSCEEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC-------------------------CCCccHHHHHHHHHhcCCCccceeeee
Confidence 55789999999997633 2335688889999999988776
Q ss_pred -------HHHHHHHHHHhCCC
Q 015907 339 -------AVAVYDRLISSYPN 352 (398)
Q Consensus 339 -------A~~~~~~al~~~p~ 352 (398)
|+.+|.+++.++|.
T Consensus 250 ~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 250 VSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp EETTTTEEEEEEEEEECTTBT
T ss_pred eccCCceEEEEeccceecccc
Confidence 56667777776765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=109.48 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
...|++++|+.+|++++..+|. ++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 9999999999999999999999 9999999999887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=119.86 Aligned_cols=149 Identities=15% Similarity=0.055 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
..++.+|.++...|++++|+..|++++ .| ++.++..+|.++...|++++|+.+|++++..+|. ++.++..+|.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 457889999999999999999999995 33 7889999999999999999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
..|++++|+..|++++...+..+.... ........|. .++..+|.++...|++++|+.+|+++++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY-----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC-----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH-----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999886654421000 0000112222 566679999999999999999999999999
Q ss_pred CCChHH
Q 015907 351 PNDFRG 356 (398)
Q Consensus 351 p~~~~~ 356 (398)
|++...
T Consensus 152 p~~~~~ 157 (213)
T 1hh8_A 152 SEPRHS 157 (213)
T ss_dssp CSGGGG
T ss_pred cccccc
Confidence 987543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=122.15 Aligned_cols=126 Identities=10% Similarity=0.140 Sum_probs=114.4
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV-KYELKDY-- 242 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 242 (398)
..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3345789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
++|+.+|++++..+|. +..++..+|.++...|++++|+..|++++...+
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999 999999999999999999999999999976433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-14 Score=122.41 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
|+..|++.+...+....++..+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88999999887767777888999999999999999999999999887 7889999999999999999999999999999
Q ss_pred hCC-----CCCHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHH
Q 015907 255 VSK-----DINFEVLRGLTNALLAAK--KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELL 325 (398)
Q Consensus 255 ~~p-----~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 325 (398)
.+| +........-+++....| ++.+|...|+++.. ..|. .....
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---------------------------~~p~~~~~~lL 217 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---------------------------TFPTWKTQLGL 217 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---------------------------TSCSHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---------------------------hCCCcccHHHH
Confidence 998 212333333454566666 99999999988733 3343 23333
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISS----------YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+. ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++-+.
T Consensus 218 ln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 218 LN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 44 899999999999999988776 48899999999999999998 89999999999999998654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=113.41 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCH
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINF 261 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~ 261 (398)
.|++++|+..|+++++++|+ +.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~-~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ-YE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcC-CC
Confidence 99999999999999999997 43
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=146.62 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=144.0
Q ss_pred hHHHHHHhhcc----hhhcCCCchhhhhhhcch---------------hhc-HHHHHHHHHHHHhccCCCCCCCCCCChH
Q 015907 99 KKAEEIKEFGP----IDYDAPIETEKKTIGLGT---------------KIG-VGVAVVIFGLVFALGDFLPSGSVSPTEE 158 (398)
Q Consensus 99 ~~~eA~~~~~~----~~~~~p~~~~~~~~~lg~---------------~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~ 158 (398)
..++|+..++. ++...|.. ++.. .|. .++ ++.|+..|..++... |...
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~-~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~---------~~~a 268 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGE-AGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEK---------LEQA 268 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCS-SCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHH---------HHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCC-CCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHH---------HHHH
Confidence 45567777776 66677653 2221 221 133 556666666666666 8888
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
..+..+|..++..|++++|+..|++++.++|.+ ..+|.++|.+|..+|++++|+..|+++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
++..+++.+|.+|..+|++++|+..|+++++++|+ +..++..++.++...+++++|...
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999888754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=107.59 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
...|++++|+..|++++..+|+ ++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence 9999999999999999999999 999998888765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=121.09 Aligned_cols=126 Identities=7% Similarity=0.046 Sum_probs=117.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVT-LAELG 206 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g 206 (398)
.| ++.|+..+..++... |.++.+|+.+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|
T Consensus 23 ~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN---------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp ----CCCCHHHHHHHHHC---------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 55 788888999999988 99999999999999999999999999999999999999999999999 88999
Q ss_pred CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 207 DY--TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 207 ~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
++ ++|+..++++++.+|.+..++..+|.++...|++++|+..|++++..+|+ +....
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 152 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP-RINRT 152 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TSCHH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CccHH
Confidence 99 99999999999999999999999999999999999999999999999998 55433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=127.46 Aligned_cols=172 Identities=10% Similarity=-0.017 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST------ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------P 226 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 226 (398)
..+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34455678889999999999999999998877765 33458889999999999999999999965432 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CC---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVS---KD---INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
.++..+|.+|...|++++|+.+|++++... |. ....++.++|.+|..+|++++|+.++++++...+....
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---- 231 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---- 231 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc----
Confidence 478999999999999999999999999532 11 13458899999999999999999999999886543311
Q ss_pred hhccccccccccccccCCCchHHHHHHHHHHhCCC-hHHHHHHHHHHHHh
Q 015907 301 VKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR-VSDAVAVYDRLISS 349 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 349 (398)
......++..+|.+|..+|+ +++|+.+|++++.+
T Consensus 232 ---------------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 232 ---------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 11123567779999999995 69999999999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=139.67 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=77.8
Q ss_pred HHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHH
Q 015907 100 KAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQ 175 (398)
Q Consensus 100 ~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 175 (398)
.++|.+.++++ +++..|.. +|.. .| +.+|+..|.++ .++..+...+..+...|+++
T Consensus 19 ld~A~~fae~~-----~~~~vWs~-La~A~l~~g~~~eAIdsfika--------------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQ-LAKAQLQKGMVKEAIDSYIKA--------------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHH-HHHHHHHcCCHHHHHHHHHcC--------------CCHHHHHHHHHHHHhCCCHH
Confidence 45555555555 22345555 5555 45 77777777542 23446667777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 176 TRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+|+.+++.+++..++ +.+...++.+|.+.|++.++.++++. |+ ..+|..+|..+...|.|++|..+|.++
T Consensus 79 eAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 79 ELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 777777777664333 56666777777777777777766642 32 347777777777777777777777755
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCC
Q 015907 256 SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR 335 (398)
Q Consensus 256 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 335 (398)
..|..++.++..+|++++|++.++++ . ....|..++.++...|+
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----------------------------~-~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----------------------------N-STRTWKEVCFACVDGKE 192 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----------------------------T-CHHHHHHHHHHHHHTTC
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc-----------------------------C-CchhHHHHHHHHHHcCc
Confidence 24567777777777777777777665 0 12344446666777777
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+..+|..
T Consensus 193 f~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 193 FRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp HHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 7777655554 223333 23356667777777777777777777777776666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=110.23 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|..+..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|+ ++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHh
Q 015907 269 NALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.++...|++++|+..|++++...
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999997754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=115.71 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPK-------DST-----ALEGAAVTLAELGDYTRAVSLLQDLAKE---- 221 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 221 (398)
...+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346788999999999999999999999999998 433 8888999999999999999999998888
Q ss_pred ---CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 222 ---KPSDPDVF----RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 222 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
+|++..+| +++|.++..+|++++|+..|+++++++|+ +..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~-d~~ 137 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE-RKG 137 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-CCS
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHH
Confidence 88888888 88888888888888888888888888877 443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=118.18 Aligned_cols=118 Identities=8% Similarity=0.062 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSI------------------SPKDSTALEGAAVTLAELGDYTRAVSLLQD 217 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 217 (398)
..+..+..+|..++..|++++|+..|.+++.. +|....++.++|.+|..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45678899999999999999999999999998 666778999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHc
Q 015907 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF-EVLRGLTNALLAA 274 (398)
Q Consensus 218 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~la~~~~~~ 274 (398)
+++++|.++.+++.+|.++..+|++++|+..|++++.++|+ +. .+...++.+....
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 77 5666776665443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-16 Score=127.13 Aligned_cols=160 Identities=11% Similarity=-0.025 Sum_probs=108.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH---------------
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF--------------- 261 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------- 261 (398)
..+.+....|++++|.+.+.......+.....+..+|.++...|++++|+..|++++.+.|. ++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 33444455566666666555544444445556666677777777777777777777766665 44
Q ss_pred -HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHH
Q 015907 262 -EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAV 340 (398)
Q Consensus 262 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 340 (398)
.++..+|.++...|++++|+.++.+++... .....+++.+|.+|...|++++|+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-------------------------KNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------------cccHHHHHHHHHHHHHcccHHHHH
Confidence 789999999999999999999999997632 222356777999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 015907 341 AVYDRLISSYPNDFRGYLAKGIILKENGKVGDAE-RMFIQARF 382 (398)
Q Consensus 341 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 382 (398)
.+|+++++++|++..++..++.++..+++..++. ..|.+.+.
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888877 44555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-14 Score=111.27 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=112.1
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
.|.....++.+|..+...|++++|+.+|++++..+|++ ..++..+|.++...|++++|+..++++++..|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 37788999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.+|.++...|++++|+.+|++++.++|+ +..++..++.+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHh
Confidence 9999999999999999999999999999 9999888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-14 Score=112.16 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
+..+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|++++..+|. ++.++..+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666666666665 555555555555
Q ss_pred HHcCCchHHHHHHHHH
Q 015907 272 LAAKKPDEAVQFLLAS 287 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a 287 (398)
...|++++|+.+|+++
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 5555555555555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=110.85 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC----CHHHHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDI----NFEVLRGLTNAL 271 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~la~~~ 271 (398)
++...|++++|+..|++++.++|+. +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987751 234444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=107.40 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 232 (398)
.+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999998 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
|.++...|++++|+..|++++...|+ +..+......+....+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 8877766665554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-13 Score=136.21 Aligned_cols=258 Identities=11% Similarity=0.042 Sum_probs=170.9
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
.+++|.+.+.. .+.+..|.. +|.. .| +.+|+..|.++ +++..|..+|.++...|++
T Consensus 1091 nldrAiE~Aer-----vn~p~vWsq-LAKAql~~G~~kEAIdsYiKA--------------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1091 NLDRAYEFAER-----CNEPAVWSQ-LAKAQLQKGMVKEAIDSYIKA--------------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred hHHHHHHHHHh-----cCCHHHHHH-HHHHHHhCCCHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCH
Confidence 34445554443 355777776 7777 67 99999999774 6677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+++|..+.+..++ +.+-..+|.+|.+++++++ ++.|. ...+...+..+|..+...|+|++|..+|.++
T Consensus 1151 EEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 9999999999987744 2233347777777777774 33332 1223455566777777778888887777764
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc-ccccccCCCchHHHHHHHHHHhC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK-ETEPQKVDPIQVELLLGKAYSDG 333 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~ 333 (398)
..|..++.++...|++++|++.++++.....-..-.......+.+.... ....+..+| +....++..|...
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~-deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-DELEELINYYQDR 1293 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCH-HHHHHHHHHHHHc
Confidence 3567777777777777777777766622100000000000000000000 000011222 2333588999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CChHHHHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE--NGKVGDAERMFIQARFFAP-----EKVKALVD 393 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 393 (398)
|.+++|+.++++++.++|.+...+..+|.+|.+ -++..+++++|...+.+.| +....|..
T Consensus 1294 G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 999999999999999999999999888888865 4667788888888877766 55555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-16 Score=139.71 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|..++++. +++.+|..+|.++...|++++|+..|.++ +++..+...+..+...|+
T Consensus 16 ~~~ld~A~~fae~~--------------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 16 IGNLDRAYEFAERC--------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC--------------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCC
Confidence 56 77788887776 22358999999999999999999999774 466789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.+++.+.+..++ +.+...++.+|.++|++.++.++++ .|+ ..+|..+|..+...|.|++|..+|.++
T Consensus 77 ~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn--~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPN--NAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-----CC------------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999886444 7788899999999999999998885 354 569999999999999999999999654
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
..+..+|.++.++|++++|++.++++ .++.+|...+.++...
T Consensus 149 ---------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 149 ---------------------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp ---------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred ---------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 35667999999999999999999999 4789999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHhhhc
Q 015907 368 GKVGDAERMFIQARFFAPEKVKALVDQYSK 397 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 397 (398)
|+++.|..+... +...|++....+++|.+
T Consensus 191 ~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 191 KEFRLAQMCGLH-IVVHADELEELINYYQD 219 (449)
T ss_dssp TCHHHHHHTTTT-TTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHhCHhhHHHHHHHHHH
Confidence 999999887775 44778777777777754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=118.81 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=127.7
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE------KPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 241 (398)
++..|++++|...++......+....++..+|.++...|++++|+.++++++.+ .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356799999999666555533366889999999999999999999999999984 33446789999999999999
Q ss_pred HHHHHHHHHHHHhh---CCC---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 242 YEGSAAAYRVSTMV---SKD---INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 242 ~~~A~~~~~~al~~---~p~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
+++|+.++++++.+ .++ ....++..+|.++...|++++|+.++++++........
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------- 142 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD------------------- 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-------------------
Confidence 99999999999988 442 13457899999999999999999999999875432210
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
.......+..+|.++...|++++|+.++++++++..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 000012345699999999999999999999987543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-14 Score=111.83 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.+.++..++.+|.++...|++++|+.+|+++++++|+++.+|..+|.++...|++++|+.+|++++.++|+ +..+|+.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
|.++...|++++|+.+|++++...+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999998855433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-14 Score=107.64 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.++++++..+|. +..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHH
Q 015907 268 TNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~ 289 (398)
|.++...|++++|+.+|++++.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999866
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=107.75 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC-------HHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN-------FEV 263 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~ 263 (398)
...++..+|.+++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+ + ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999876 3 347
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+..+|.++...|++++|+.+|++++.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999999999876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=106.19 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=100.5
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 186 SISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
..+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+ ++.++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
.+|.++...|++++|+..|++++...+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999999886654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=107.06 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|. ++.++..+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555554 44444444444
Q ss_pred HHHcCCchHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLA 286 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~ 286 (398)
+...|++++|+.+|++
T Consensus 90 ~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4444444333333333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=117.46 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=128.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHHcC
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV------SKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~la~~~~~~~ 275 (398)
+...|++++|...++.+....+....++..+|.++...|++++|+.++++++.+ .|. ...++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcC
Confidence 356899999999665554433366789999999999999999999999999984 233 4668999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC---chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP---IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
++++|+.++++++......+ .++ ..++..+|.++...|++++|+.++++++...+.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~---------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLP---------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSC---------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC---------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988654221 112 234556999999999999999999999975332
Q ss_pred --C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 353 --D----FRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 353 --~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
+ ..++..+|.++...|++++|+.++++++.+..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2 34568999999999999999999999998743
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=108.69 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-------DPD-----VFRLLGEVKYELKDYEGSAAAYRVSTMV---- 255 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 255 (398)
...+..+|..+...|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCCHHHH----HHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 256 ---SKDINFEVL----RGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 256 ---~p~~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
+|+ +..+| +++|.++..+|++++|+..|++++++.+...
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 999 99999 9999999999999999999999999877653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-14 Score=106.26 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=108.0
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PDV 228 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 228 (398)
..+..++.+|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
+..+|.++...|++++|+.+|++++...|+ +..+..++.+....+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999885 777888877765443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=127.18 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS-----------------TALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
.+.+..|..+...|++++|+..|.++++..|... .++..+|.+|...|++++|++++.++++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999887653 36889999999999999999999999987
Q ss_pred CCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 222 KPSDP------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 222 ~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
.+... .+...++.++...|+++.|+.++++++...+. ....++..+|.++...|++++|+..+.++...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 65432 34566788888899999999999999876432 13568899999999999999999999998776
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC---CC----hHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP---ND----FRGYLAKGII 363 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~ 363 (398)
.....+ ......++..+|.+|...|++++|..++++++...+ .. ...+..+|.+
T Consensus 165 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 165 FKKLDD-------------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HTTSSC-------------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhccc-------------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 543311 111124566699999999999999999999987643 22 3567788999
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 015907 364 LKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~al~~ 383 (398)
+...|++++|..+|.+++..
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=106.04 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+ ++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCchHHHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASRER 290 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~~~ 290 (398)
.|++++|+..|+++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=139.06 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC---------------HHHHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN---------------FEVLRGLTNA 270 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~la~~ 270 (398)
+++++|+..|+.++...|.....+..+|.+++..|++++|+..|++++.+.|. + ..++.++|.+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555 4 6899999999
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
+..+|++++|+.+|.+++...+ +...+++.+|.+|..+|++++|+..|+++++++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999977322 224567779999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHH
Q 015907 351 PNDFRGYLAKGIILKENGKVGDAERM 376 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A~~~ 376 (398)
|++..++..++.++..+|++++|...
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=104.07 Aligned_cols=104 Identities=11% Similarity=0.105 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRLL 232 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 232 (398)
|.++..++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++..|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHhhCCC
Q 015907 233 GEVKYEL-KDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 233 a~~~~~~-g~~~~A~~~~~~al~~~p~ 258 (398)
|.++... |++++|+.++++++...|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999999999887
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-15 Score=139.15 Aligned_cols=131 Identities=8% Similarity=0.055 Sum_probs=118.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..++++++++|+++.+++.+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH--HHHcCCchHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA--LLAAKKPDEAVQFLLA 286 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~--~~~~~~~~~A~~~~~~ 286 (398)
+|..+|++++|+..|+++++++|+ +..++..++.+ +...|++++|+..+++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999 88899999888 8889999999999873
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-13 Score=100.21 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|.++...|++++|+..|++++...|. +..++..+|.++...|++++|+.+++++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 73 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------- 73 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------
Confidence 34444444444444444444444444444444 44444444444444444444444444443311
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
......+..+|.++...|++++|+.+|++++..+|++..++..++.++...
T Consensus 74 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 74 ----------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 011123333555555555555555555666666666666666666665544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-14 Score=108.36 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=90.1
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDY----------TRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
..+.+.+++|+..++++++++|+++++|.++|.++...+++ ++|+..|+++++++|+...+|+++|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999875 59999999999999999999999999999
Q ss_pred Hcc-----------CHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 238 ELK-----------DYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 238 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.+| ++++|+.+|+++++++|+ +...+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~-~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 885 899999999999999999 76554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=107.09 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=88.1
Q ss_pred HhccHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSI---SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
..|++++|+.+|+++++. +|+++.++..+|.+|..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
..|++++...|+ ++........+
T Consensus 82 ~~~~~al~~~p~-~~~~~~~~~ai 104 (117)
T 3k9i_A 82 ELLLKIIAETSD-DETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHCC-CHHHHHTHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHH
Confidence 999999999999 87765433333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=125.61 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLS----------------ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
...+..+|..+...|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 77888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 222 KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 222 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
+|+++.+++.+|.+|..+|++++|+..|+++++++|+ +..++..++.++...++++++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999998888777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=124.95 Aligned_cols=229 Identities=9% Similarity=-0.045 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRL-KKYEETLSISPKDSTALEGAAVTLAELGDYTRA 211 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 211 (398)
.....|++++... |..+..|+..+..+...|+.++|. ..|++++...|.+...|..++......|++++|
T Consensus 327 Rv~~~Ye~aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 327 RMTYVYMQAAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3457899999888 999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-----------CC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCCHHHHHHHH
Q 015907 212 VSLLQDLAKEK-----------PS-----------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SKDINFEVLRGLT 268 (398)
Q Consensus 212 ~~~~~~al~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~la 268 (398)
..+|++++... |. ...+|...+......|+.+.|...|.++++. .+. ...+|...+
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A 476 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 99999999752 43 3457888899888999999999999999987 333 567787777
Q ss_pred HHHHHcC-CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 269 NALLAAK-KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 269 ~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
.+....+ +++.|..+|+.+++..+.. ...+...+......|+.+.|..+|++++
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p~~-------------------------~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFATD-------------------------GEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTTC-------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCc-------------------------hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777665 4899999999998754322 3444457777888899999999999999
Q ss_pred HhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH--HHHHhhh
Q 015907 348 SSYPN---DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK--ALVDQYS 396 (398)
Q Consensus 348 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~ 396 (398)
...|+ ...+|......-...|+.+.+..+++++.+..|+++. .+.++|+
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 98873 5678888899999999999999999999999998754 3455553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=129.26 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=95.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS-----------------TALEGAAVTLAELGDYTRAVSLLQD 217 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 217 (398)
+.....+..+|..++..|++++|+.+|++++...|++. .++.++|.+|..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567889999999999999999999999999999877 4899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhc
Q 015907 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL-LAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 218 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+++++|++..+|+.+|.+|..+|++++|+..|++++.++|+ +..++..++.+. ...+..+++...|.+++...+
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999 999999999884 456677888888887755433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=96.38 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
.+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|. ++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHcCCchHHHHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~ 289 (398)
+...|++++|+.++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998854
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=126.94 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=132.8
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
+|.. .| +++|+..|.+++.+. |.+..+|..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN---------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5554 67 999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHhhCCCC--------
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV--KYELKDYEGSAAAYR-----------VSTMVSKDI-------- 259 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~-------- 259 (398)
+|..+|++++|+..|+++++++|++..++..++.+ +...|++++|+..++ +++.+.|..
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999988 888999999999999 777776651
Q ss_pred --CHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHhcCCCC
Q 015907 260 --NFEVLRGLTNALLAAKKPD--EAVQFLLASRERLSTGKS 296 (398)
Q Consensus 260 --~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~ 296 (398)
....+..+...+...+... .+..++.++.+++...+.
T Consensus 163 ~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~ 203 (477)
T 1wao_1 163 KVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLST 203 (477)
T ss_dssp SCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 1223344445555555544 444577777777766544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=107.16 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE------------------KPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
...+..+|..++..|+|++|+..|.+++.+ +|....++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999998 66677899999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
.++|. ++.+++.+|.++...|++++|+..|++++.+
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999 9999999999999999999999999999663
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-12 Score=111.03 Aligned_cols=183 Identities=10% Similarity=-0.047 Sum_probs=139.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP--KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS----DPDV 228 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 228 (398)
+....+++.+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +..+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 44456678999999999999999999999999987 78899999999999999999999999999999883 2334
Q ss_pred HHHH--HHHHHHcc--CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 229 FRLL--GEVKYELK--DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 229 ~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
...+ +.+....| ++.+|..+|+++....|+ .......+. ++..+|++++|...++.+.+..+...+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~-------- 246 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQ-------- 246 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTT--------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccc--------
Confidence 4444 44466666 999999999999887775 222222223 899999999999999876543221000
Q ss_pred ccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHH
Q 015907 305 RSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 358 (398)
....+|. +...+++.+....|+ +|.++++++.+.+|+++.+.-
T Consensus 247 ---------k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 247 ---------KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp ---------CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ---------cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 0000234 455567777777887 899999999999999986543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=105.03 Aligned_cols=137 Identities=16% Similarity=0.086 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---- 225 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 225 (398)
....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345678999999999999999999999999876543 2488999999999999999999999999875432
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 226 --PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 226 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
..++..+|.++...|++++|+.++++++...+.. ...++..+|.++...|++++|+.+++++++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999874320 245788999999999999999999999987654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-12 Score=100.40 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 186 SISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
...|.+...+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+ +..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHH
Confidence 3457889999999999999999999999999999999987 889999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
++..+|.++...|++++|+.+|++++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=119.48 Aligned_cols=218 Identities=10% Similarity=-0.009 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 86 ERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 86 ~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
.+++.++.....+++.+|++.|.+++...|...+.... .+.. .... +....++..+|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-~~~~---~~~~-------------------~~~~~al~~l~ 62 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-ASVD---DKRR-------------------NEQETSILELG 62 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-SSBC---SHHH-------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-HHHH---HHHh-------------------hhHHHHHHHHH
Confidence 36778888888999999999999999999887766543 2222 0000 12223567899
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVTLAELGDYTRAVSLLQDLAKEKP------SDPDVFRLLG 233 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la 233 (398)
.+|...|++++|+.++.+++...+... .+...++.++...|++++|+.++++++...+ ....++..+|
T Consensus 63 ~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 999999999999999999988755442 3566788888889999999999999987532 2356889999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhC------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVS------KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
.++...|++++|+.++++++... +. ...++..++.+|...|++++|..++++++...+..
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------- 208 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPS-LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI------------- 208 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-------------
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC-------------
Confidence 99999999999999999998762 22 46689999999999999999999999998765422
Q ss_pred cccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 308 DKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 308 ~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
.+|. ..+..+|.++...|++.+|..+|.++++.
T Consensus 209 ---------~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 209 ---------YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222 33445899999999999999999999864
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=98.06 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC---HHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN---FEVLRG 266 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~ 266 (398)
.+++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++..+|+ + +.+++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 3578899999999999999999999999999988 79999999999999999999999999999999 7 889999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
+|.++...|++++|+..|++++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999986643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=119.13 Aligned_cols=189 Identities=8% Similarity=-0.132 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV-SLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.+.....|++++...|..+.+|...+..+...|+.++|. ..|++++...|.+...|..++......|+++.|...|+++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455678999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HhhC-----------CC----------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccc
Q 015907 253 TMVS-----------KD----------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311 (398)
Q Consensus 253 l~~~-----------p~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 311 (398)
+..- |. ....+|...+.+..+.|..+.|..+|.+|++..+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~------------------- 465 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK------------------- 465 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-------------------
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------------------
Confidence 9752 42 0245788889998999999999999999976311
Q ss_pred cccccCCCchHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 312 TEPQKVDPIQVELLLGKAYSDGG-RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 312 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.....++...+.+-...+ +++.|..+|+.+++..|+++..|..++......|+.+.|..+|++++...|+
T Consensus 466 -----~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 466 -----LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp -----GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred -----CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 112345555666666655 5999999999999999999999999999999999999999999999998884
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=96.31 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=97.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLR 265 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 265 (398)
++|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|+++++..|.. +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 3688889999999999999999999999999999999999999999999999999999999999999998851 488999
Q ss_pred HHHHHHHHc-CCchHHHHHHHHHHHHh
Q 015907 266 GLTNALLAA-KKPDEAVQFLLASRERL 291 (398)
Q Consensus 266 ~la~~~~~~-~~~~~A~~~~~~a~~~~ 291 (398)
.+|.++... |++++|+.+++++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999998885543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=103.56 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-C----
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-N---- 260 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~---- 260 (398)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++.+.+.. +
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4577888999999999999999999988875432 2477888899999999999999999888765431 1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 261 FEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 261 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
..++..+|.++...|++++|+.++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346677777777777777777777777654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=121.77 Aligned_cols=158 Identities=13% Similarity=0.000 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
+.....+..+|..+...|+|++|+..|++++...|.+.. +...+++.++...+. ..++.++|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 445778899999999999999999999999998886541 223344455443331 24789999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.++..+|++++|+.+|++++... .+...+++.+|.+|..+|++++|+..|+++++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999997632 22245677799999999999999999999999
Q ss_pred hCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 349 SYPNDFRGYLAKGIIL-KENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 349 ~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999984 5567788999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=100.39 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhcCCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL----------QTRLKKYEETLSISPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~ 197 (398)
.+ +++|+..+.+++.++ |.++.+|+++|.++...+++ ++|+..|+++++++|++..+|+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~---------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN---------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 34 888999999999999 99999999999999998875 59999999999999999999999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHH
Q 015907 198 AAVTLAELG-----------DYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 198 la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~ 228 (398)
+|.+|..+| ++++|+.+|+++++++|++...
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999999885 8999999999999999997533
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=97.72 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccc
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGR 305 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (398)
+..+..+|.++...|++++|+.+|++++..+|. ++.++..+|.++...|++++|+.++++++...+..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 73 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--------- 73 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT---------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch---------
Confidence 455666677777777777777777777777766 6667777777777777777777777666554332100
Q ss_pred cccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 306 SGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
....-..++..+|.++...|++++|+.+|+++++..| +...+..++.+....+
T Consensus 74 ---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 74 ---------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 0000024556699999999999999999999999988 6888888888776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-13 Score=99.67 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhc---cCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 131 VGVAVVIFGLVFAL---GDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 131 ~~~A~~~~~~a~~~---~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
+++|+..|.+++.+ . |.++.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 6 ~~~A~~~~~~al~~~~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQG---------KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -CCCHHHHHHHHSSCCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCC---------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence 67888999999987 5 88889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
+++|+..+++++...|+++.+....
T Consensus 77 ~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 77 YEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999998765433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-12 Score=113.88 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
...+..+|..+...|++++|+..|++++++.+..+ .....+.....+|. ...++.++|.++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~-~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPV-ALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHH-HHHHHHHHHHHH
Confidence 56788899999999999999999999988533211 01112333345555 566666777777
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
..+|++++|+.+++++++ .+|. .+++.+|.+|..+|++++|+..|++++++
T Consensus 284 ~~~g~~~~A~~~~~~al~---------------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALE---------------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHT---------------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH---------------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777777777777766643 2232 34555777777777777777777777777
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHH
Q 015907 350 YPNDFRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 350 ~p~~~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+|++..++..++.++..+++++++..
T Consensus 337 ~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 337 APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877777776654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=91.27 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 176 TRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+..+|..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHH
Q 015907 256 SKDI-NFEVLRGLTNAL 271 (398)
Q Consensus 256 ~p~~-~~~~~~~la~~~ 271 (398)
.|.. +......+...+
T Consensus 83 ~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 8741 344444444444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-11 Score=85.60 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
..+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred HHHc
Q 015907 236 KYEL 239 (398)
Q Consensus 236 ~~~~ 239 (398)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=95.94 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC------HHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN------FEVLRG 266 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~ 266 (398)
.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|+ + ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 344444455555555555555555555555544445555555555555555555555555555544 4 444445
Q ss_pred HHHHHHHcCCchHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~ 284 (398)
+|.++...|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 555555544444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-12 Score=93.56 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFR 230 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 230 (398)
.+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 015907 231 LLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~ 251 (398)
.+|.++...|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988877766654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=85.02 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.+|++++.++|. +..++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHcC
Q 015907 270 ALLAAK 275 (398)
Q Consensus 270 ~~~~~~ 275 (398)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=86.81 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
.|+..|.+++... |.++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+
T Consensus 3 ~a~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQG---------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTT---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 015907 213 SLLQDLAKEKPS--DPDVFRLLGEVKYE 238 (398)
Q Consensus 213 ~~~~~al~~~p~--~~~~~~~la~~~~~ 238 (398)
..|++++++.|. +......+...+..
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 74 QAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999998774 34444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-11 Score=85.37 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRG 266 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 266 (398)
+|+++.+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.+|...|++++|+..|++++.+.|.. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 577777777777777777777777777777777777777777777777777777777777777777765431 3344444
Q ss_pred HHHHHH
Q 015907 267 LTNALL 272 (398)
Q Consensus 267 la~~~~ 272 (398)
+..++.
T Consensus 83 l~~~l~ 88 (100)
T 3ma5_A 83 LQDAKL 88 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-11 Score=85.02 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=72.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788888888888888888888888888888 88888888888888888888888888888888777643 5
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 015907 241 DYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~ 258 (398)
.+.+++..|++++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 567777777777776665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=82.50 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRL 231 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 231 (398)
.|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999998663 3444444
Q ss_pred HHHHHHH
Q 015907 232 LGEVKYE 238 (398)
Q Consensus 232 la~~~~~ 238 (398)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-08 Score=91.19 Aligned_cols=84 Identities=7% Similarity=-0.090 Sum_probs=56.9
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc--HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH----
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG--VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE---- 169 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g--~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~---- 169 (398)
++.+.+..+|+..+...| +.+.|...+... .| .+.....|+.++..- +.++.....|......+.
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v------g~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF------ENYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS------TTCTTCHHHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc------CCCcccHHHHHHHHHHHHhchh
Confidence 678889999999999888 566665423333 33 345566777777542 112566677777665543
Q ss_pred HhccHHHHHHHHHHHHhcC
Q 015907 170 EKNVLQTRLKKYEETLSIS 188 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~ 188 (398)
..++.+.+...|++++...
T Consensus 101 ~~~~~~~vR~iy~rAL~~P 119 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQTP 119 (493)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHhCh
Confidence 4678899999999999853
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=82.30 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSA 246 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 246 (398)
.+++++|+.+|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46899999999999998744 344 999999999999999999999987 678999999999999 89999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRE 289 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~ 289 (398)
.+|+++.+. . ++.+++++|.+|.. .+++++|+.+|+++.+
T Consensus 82 ~~~~~Aa~~--g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGL--N-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--C-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 999999987 3 79999999999999 9999999999999865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-09 Score=80.83 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cC
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LG 206 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g 206 (398)
+++|+.+|.++.... ..... +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+
T Consensus 11 ~~~A~~~~~~aa~~g---------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 11 LKKAIQYYVKACELN---------EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHTT---------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHcCC---------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc
Confidence 889999999998766 33333 899998888999999999999986 689999999999999 89
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~l~ 136 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG---SEDACGILN 136 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHC-
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHh
Confidence 999999999999987 678999999999999 899999999999999875 556665554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-10 Score=104.41 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=107.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---H
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSI-----SPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDP---D 227 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~ 227 (398)
.+..+..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 444566789999999999999975 4555 457899999999999999999999999975 45554 5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCCHH---HHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMV-----SKDINFE---VLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.+.+||.+|..+|++++|+.+|++++.+ .|+ ++. ....++.++..++.+++|...|.++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999975 566 554 56789999999999999999999997755
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.6e-10 Score=79.81 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|+ +..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 56889999999999999999999999999999 9999999999999999999999999999999 8877743
Q ss_pred CCchHHHHHHHHHHHHhc
Q 015907 275 KKPDEAVQFLLASRERLS 292 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~ 292 (398)
+.+.+++..|+++....+
T Consensus 75 ~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCc
Confidence 445667777766544433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=102.10 Aligned_cols=132 Identities=11% Similarity=-0.028 Sum_probs=105.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh-----CCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMV-----SKDINF---EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
.+..+..+|+|++|+..+++++++ .|+ ++ .++.+||.+|..+|+|++|+.++++++.+....
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------- 384 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADT-NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL--------- 384 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---------
Confidence 344566789999999999999976 344 44 468899999999999999999999998765422
Q ss_pred cccccccccccccC-CCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCCHHH
Q 015907 304 GRSGDKKETEPQKV-DPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS-----YPND---FRGYLAKGIILKENGKVGD 372 (398)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~ 372 (398)
+.. +|. ..+.++|.+|..+|++++|+.+|++++++ .|+. .+...+++.++..++.+++
T Consensus 385 -----------lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 385 -----------YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp -----------SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222 24455999999999999999999999974 3444 5677899999999999999
Q ss_pred HHHHHHHHHhhC
Q 015907 373 AERMFIQARFFA 384 (398)
Q Consensus 373 A~~~~~~al~~~ 384 (398)
|...|.++.+..
T Consensus 454 ae~~~~~~~~~~ 465 (490)
T 3n71_A 454 NEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-08 Score=87.76 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=62.5
Q ss_pred cCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 316 KVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 316 ~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..+|.++..+ ++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|.+|+.++|..+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3445555554 777777789999999999999999974 778899999999999999999999999999998753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-08 Score=86.65 Aligned_cols=138 Identities=15% Similarity=0.013 Sum_probs=108.0
Q ss_pred hhcCCCchhhhhh---hcchh-h---c-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH--------
Q 015907 111 DYDAPIETEKKTI---GLGTK-I---G-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL-------- 174 (398)
Q Consensus 111 ~~~~p~~~~~~~~---~lg~~-~---g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-------- 174 (398)
....|.+++++.. |.+.+ . . ...|+.+|+++++++ |+.+.++-.++.++.....+
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---------P~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---------PEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 3445666666543 22222 2 2 789999999999999 99999999888888643211
Q ss_pred HHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 175 QTRLKKYEE--TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 175 ~~A~~~~~~--~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
......++. ++..+|.++.++..++..+...|++++|+..+++++.++|. ..+|..+|.++...|++++|++.|++|
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111112222 33567999999999999999999999999999999999975 678889999999999999999999999
Q ss_pred HhhCCC
Q 015907 253 TMVSKD 258 (398)
Q Consensus 253 l~~~p~ 258 (398)
+.++|.
T Consensus 337 lrL~P~ 342 (372)
T 3ly7_A 337 FNLRPG 342 (372)
T ss_dssp HHHSCS
T ss_pred HhcCCC
Confidence 999997
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-08 Score=71.16 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 188 SPKDSTALEGAAVTLAELGD---YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+|+++.++..+|.+++..++ .++|..+++++++.+|+++.++..+|..++..|+|++|+.+|++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666655544 566666666666666666666666666666666666666666666666665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=80.79 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTL-------AEL--------------GDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~-------~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.-.+..++-.+..+|++...+...|..| .+. .++..|..+|.++.+. ++ .+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y------~~--ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY------AL--SS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH------HH--HH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH------HH--HH
Confidence 3446778888889999976554444433 222 1244556666655432 11 11
Q ss_pred HHHHHccCHHHHHH-----HHHHHH-hhCCCCCHHHHHHHHHHHHH-----cCCc------hHHHHHHHHHHHHhcCCCC
Q 015907 234 EVKYELKDYEGSAA-----AYRVST-MVSKDINFEVLRGLTNALLA-----AKKP------DEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 234 ~~~~~~g~~~~A~~-----~~~~al-~~~p~~~~~~~~~la~~~~~-----~~~~------~~A~~~~~~a~~~~~~~~~ 296 (398)
+......+.+++. -+..++ +.+|+ ++++++..|.+... .|.+ .+|...++++++
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle------- 191 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRV-DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD------- 191 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGG-GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-------
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCcc-ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-------
Confidence 1111122332222 223333 34677 88888877777643 2332 466677777644
Q ss_pred CchhhhccccccccccccccCCCc--h--HHHHHHHHHHhC-----CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Q 015907 297 DDLSVKDGRSGDKKETEPQKVDPI--Q--VELLLGKAYSDG-----GRVSDAVAVYDRLISSYPND-FRGYLAKGIILKE 366 (398)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 366 (398)
++|. + ++..+|.+|... |+.++|..+|+++++++|+. ...++.+|..+..
T Consensus 192 --------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 192 --------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp --------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred --------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 5565 3 667799999995 99999999999999999975 9999999999988
Q ss_pred -cCCHHHHHHHHHHHHhhCCC
Q 015907 367 -NGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 367 -~g~~~~A~~~~~~al~~~p~ 386 (398)
.|++++|..++++++..+|.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGG
T ss_pred hcCCHHHHHHHHHHHHcCCCC
Confidence 59999999999999998877
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-08 Score=75.06 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG---DYTRAVSLLQDLAKEK-P-SDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
+....+...|.+.+..+|.+.++.+.+|.++.+.+ +.++++.+++.+++.+ | ...++++.+|..+.++|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566778888888889999999999999999988 7779999999999998 7 56889999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la 268 (398)
++++++++++|+ +..+....-
T Consensus 92 ~y~~~lL~ieP~-n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQ-NNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHH
Confidence 999999999999 777655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-07 Score=77.80 Aligned_cols=104 Identities=15% Similarity=0.050 Sum_probs=88.5
Q ss_pred hcCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHH
Q 015907 186 SISPKDSTALEGAAVTLAE---L--G------DYTRAVSLLQDLAKEKPS--DPDVFRLLGEVKYEL-----KDYEGSAA 247 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 247 (398)
..+|+++++++..|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4567888877777766533 1 3 346899999999999999 567999999999995 99999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLA-AKKPDEAVQFLLASRE 289 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~ 289 (398)
+|+++++++|+.+..+++.+|..+.. .|++++|..++++++.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 99999999997349999999999988 5999999999999977
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-08 Score=70.29 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 154 SPTEEAGVVNKELSEEEKNV---LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
.|.++..+..+|.+++..++ .++|...|+++++.+|+++.++..+|..++..|+|++|+.+|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 38889999999999987766 79999999999999999999999999999999999999999999999999843
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-06 Score=81.07 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC-CCCHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGD---------YTRAVSLLQDLAKEK-PSDPDV 228 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~ 228 (398)
.+..+-..+.+.|++++|+..|+++.+.. +.+...|..+-.++...+. .++|.++|+++.... +-+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555677788999999999999988753 2356667777666655443 688999999888753 225678
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
|..+...|...|++++|..+|+++....-..+...|..+...|...|+.++|..+|+++..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~------------------- 168 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE------------------- 168 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-------------------
Confidence 8899999999999999999999988764333688999999999999999999999988866
Q ss_pred ccccccccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHh
Q 015907 309 KKETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
....|+...+. +...|.+.|+.++|..++++.-+.
T Consensus 169 ------~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 ------SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp ------TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 35667655444 889999999999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-06 Score=81.84 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhhCCCCCHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEK-PSDPDVFRLLGEVKYELK---------DYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
.+..+-..+.+.|+.++|+.+|+++.+.. +-+..+|..+-.++...+ ..++|.+.|+++....-..+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45566678889999999999999998853 224667777766665543 47899999999887654336889
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH-HHHHHHhCCChHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~ 342 (398)
|..+...|...|++++|..+|+++.. ....|+...++ +-..|.+.|+.++|..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~-------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKA-------------------------FGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-------------------------TTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-------------------------cCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999998865 34566654444 88899999999999999
Q ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 343 YDRLISSY-PNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 343 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|++..+.. .-+...|..+..+|.+.|+.++|.+++++..+.
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99998743 225678999999999999999999999998764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-06 Score=80.64 Aligned_cols=202 Identities=8% Similarity=-0.129 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
.....|++++... |..+..|+..+..+...|+.+.|...|++++.. |.+...|...+... ..+ +.
T Consensus 197 Rv~~~ye~al~~~---------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~- 261 (493)
T 2uy1_A 197 RMHFIHNYILDSF---------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV- 261 (493)
T ss_dssp HHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH-
T ss_pred HHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH-
Confidence 4567888888877 888889999998888889999999999999999 88877766554431 111 11
Q ss_pred HHHHHHHHh---C----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC-Cch
Q 015907 213 SLLQDLAKE---K----------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK-KPD 278 (398)
Q Consensus 213 ~~~~~al~~---~----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~-~~~ 278 (398)
++++... . +....+|...+......++.+.|...|+++ . .|.....+|...+.+....+ +++
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChH
Confidence 2222211 0 112356777777777788899999999999 4 33325677777776666555 699
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHH
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 358 (398)
.|...|+.+++..+.. .+.+...+......|+.+.|..+|+++ +.....|.
T Consensus 338 ~ar~ife~al~~~~~~-------------------------~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~ 388 (493)
T 2uy1_A 338 TPYNIFSSGLLKHPDS-------------------------TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHHHCTTC-------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHH
T ss_pred HHHHHHHHHHHHCCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHH
Confidence 9999999887743211 233444667777889999999999887 34677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 359 AKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 359 ~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.....-...|+.+.+...+++++.
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888999999888888875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=72.91 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHc
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN---VLQTRLKKYEETLSIS-P-KDSTALEGAAVTLAEL 205 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~ 205 (398)
...+...|...+..+ +.+..+.+.+|+++...+ +.++++..|+.+++.+ | +..++++.+|..++++
T Consensus 14 l~~~~~~y~~e~~~~---------~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---------SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHTT---------CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC---------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence 455677778777766 788899999999999977 7889999999999998 7 5689999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|+|++|..+++++++++|++..+....-.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999887665443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=66.84 Aligned_cols=75 Identities=9% Similarity=0.039 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEK-------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
.-++.+|..++..|+|..|+.+|+.+++.. +....++..+|.++..+|+++.|+.++++++.+.|+ +..+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHh
Confidence 344555555555555555555555555532 123455556666666666666666666666666665 555554
Q ss_pred HHH
Q 015907 266 GLT 268 (398)
Q Consensus 266 ~la 268 (398)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-07 Score=66.63 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSIS-------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 229 (398)
.+...+.+|..++..|+|..|+.+|+.+++.. +..+.++..+|.++..+|+++.|+.++++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567899999999999999999999999863 34578999999999999999999999999999999999988
Q ss_pred HHHH
Q 015907 230 RLLG 233 (398)
Q Consensus 230 ~~la 233 (398)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=85.15 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=51.2
Q ss_pred hccHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSI-----SPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDP---DVFRLLGE 234 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~ 234 (398)
.|+|++|+..|++++++ .|+++ .++.++|.+|..+|+|++|+.++++++++ .|+++ ..+.+||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34566666666666653 34443 34566666666666666666666666653 23333 34666666
Q ss_pred HHHHccCHHHHHHHHHHHHhh
Q 015907 235 VKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~ 255 (398)
+|..+|++++|+.+|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 666666666666666666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-07 Score=85.35 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=77.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSI-----SPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDP---DV 228 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 228 (398)
...+...|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888888865 3444 346788888888888998888888888864 34444 46
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCCHHH---HHHHHHHH
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMV-----SKDINFEV---LRGLTNAL 271 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~~la~~~ 271 (398)
+++||.+|..+|++++|+.+|++++++ .|+ ++.+ +.+|+.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE-HSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 788888888888888888888888865 555 5543 34444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.7e-07 Score=82.68 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=79.0
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC-Cc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD-PI--QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
..|+|++|+..+++++.+.... +..+ |. ..+.++|.+|..+|+|++|+.++++++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~--------------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV--------------------FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT--------------------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCc--------------------cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 4688999999999998866533 2222 22 23445999999999999999999999974
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHH
Q 015907 350 --------YPNDFRGYLAKGIILKENGKVGDAERMFIQARFF-----APEKVKAL 391 (398)
Q Consensus 350 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 391 (398)
+|+....+.+||.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444568999999999999999999999999975 57776653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=80.04 Aligned_cols=109 Identities=8% Similarity=-0.068 Sum_probs=85.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CCCC---HHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI-----SPKD---STALEGAA 199 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la 199 (398)
.| +++|+..+++++.+... .-+..+|....++.++|.+|..+|+|++|+.++++++.. .|++ ...++++|
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~-~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSE-RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSC-CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccC-cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 67 89999999999976421 123334666788999999999999999999999999975 3555 45789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHH
Q 015907 200 VTLAELGDYTRAVSLLQDLAKE-----KPSDPDV---FRLLGEVKYE 238 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 238 (398)
.+|..+|++++|+.+|++++++ .|+++.+ +.+|+.+...
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5676654 4555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=58.65 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=82.3
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR---AVSLLQDLAKEK-P-SDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 244 (398)
.......+...|.+.+..++....+.+.+|.++....+... ++.+++..+..+ | ..-+.++.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34456667778888888788889999999999999888777 999999988876 4 456789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|..+++.+++..|+ +..+.....
T Consensus 93 A~~~~~~lL~~eP~-n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ-NNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999999 877665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-05 Score=59.00 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=89.1
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--H
Q 015907 255 VSKDINFEVLRGLTNALLAAKKP------DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--L 326 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l 326 (398)
+.|. +++.|..........|++ ++-++.|+++....+.... ......++.| .
T Consensus 8 ~~p~-~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-------------------~~wrrYI~LWIrY 67 (161)
T 4h7y_A 8 MMAN-NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-------------------GQNESFARIQVRF 67 (161)
T ss_dssp --CC-SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-------------------TTCHHHHHHHHHH
T ss_pred eCCC-CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-------------------ccHHHHHHHHHHH
Confidence 4577 788888888887777887 7777888877765553300 1111223333 5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
|.. ...++.++|...|+.++.++...+.+|...|..-.++|+...|...+.+++.+.|...+.+..
T Consensus 68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 544 555999999999999999988899999999999999999999999999999999987665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-05 Score=58.02 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHc
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT---RLKKYEETLSIS-P-KDSTALEGAAVTLAEL 205 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~ 205 (398)
+..+...|......+ +....+.+.+|+++....+... ++..++..+..+ | ..-++++.+|..++++
T Consensus 17 l~~~~~~y~~e~~~~---------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG---------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHS---------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccC---------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 344555666666555 6777888999999988765555 999999999987 5 4568999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|+|++|..+++.+++..|++..+......
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999887665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=59.63 Aligned_cols=112 Identities=17% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------STALEGAAVTLAELGDYTRAVSLLQDLAKEK---PSD 225 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 225 (398)
..+++.....+...|.|+.|+.....++....++ ..++..+|.+++..++|..|...|+++++.. +..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566777788889999999999888876654322 2478999999999999999999999987642 111
Q ss_pred ----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 226 ----------------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 226 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.++.+.++.||.+++++++|+..++.+-.... .+.+...||.+|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHHh
Confidence 25667777777777777777777765433322 355666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00015 Score=54.54 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHHhccH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVL------QTRLKKYEETLSISPKD--------STALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|.+++.|..........|+. ++-+..|++++..-|.. ...|...|.. ...++.++|.+.|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 88888888888888888888 88888999988876653 2355566644 566899999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
+....+.+|...|..-..+|+...|.+.+.+++.+.|. ..+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~ 129 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLE 129 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHH
Confidence 87777888888888888899999999999999998887 443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0003 Score=54.16 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhC---CCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc-h
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVS---KDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD-L 299 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 299 (398)
++.-...+...|.|+.|+-....++.+. |+. ...++..+|.+++..++|..|...|+++++....-+... .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4444555566667777766666655442 220 123566777777777777777777777655433211100 0
Q ss_pred hhhccccccccccccccC-CCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 300 SVKDGRSGDKKETEPQKV-DPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
....+. .......... ...++.+.++.||..++++++|+..++..-. ....+.+...||.+|
T Consensus 103 ~~~~~~--~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN--SASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred cccccc--cCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 000000 0000000001 1124555678888888888888777654321 223466666666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00047 Score=50.83 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKN---VLQTRLKKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.+.+.++.|+++.... +..+++..++..+..+|. .-+.++.+|..++++|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455666666666543 445677777777776663 356777777777777777777777777777777776655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=49.49 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 157 EEAGVVNKELSEEEKN---VLQTRLKKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
...+.++.++++.... +..+++..++..+...|. .-++++.+|..++++|+|.+|..+.+.+++..|++..+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3445555666655543 344566666666666653 3456666666666666666666666666666666655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0026 Score=46.93 Aligned_cols=89 Identities=17% Similarity=0.038 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDY---TRAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
..-|++-+ ...-.+.+.+.+|.++.+..+. .+++.+++..++.+|. .-+.++.+|..+.++|+|++|..+.+.++
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444422 2334678999999999988765 4799999999998884 47899999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLT 268 (398)
Q Consensus 254 ~~~p~~~~~~~~~la 268 (398)
+..|+ +..+.....
T Consensus 106 ~~eP~-N~QA~~Lk~ 119 (134)
T 3o48_A 106 EHERN-NKQVGALKS 119 (134)
T ss_dssp TTCTT-CHHHHHHHH
T ss_pred hhCCC-CHHHHHHHH
Confidence 99999 877655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0038 Score=46.62 Aligned_cols=78 Identities=19% Similarity=0.085 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYT---RAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
...+.+.+.+|.++....+.. +++.+++..+...|. .-+.++.+|..+.++|+|++|..+.+.+++..|+ +..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHH
Confidence 557889999999999987654 799999999998884 4678999999999999999999999999999999 77665
Q ss_pred HHH
Q 015907 265 RGL 267 (398)
Q Consensus 265 ~~l 267 (398)
...
T Consensus 115 ~Lk 117 (144)
T 1y8m_A 115 ALK 117 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.067 Score=41.06 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--C--------
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAK--E--K-------- 222 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~-------- 222 (398)
|..++--..++..++-.|++.+++-.+.. -+...+.+..+.||...++|..|+..++..++ . +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 34445556677888888888888777653 24567777788888888888888888888883 2 2
Q ss_pred -----CCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 223 -----PSDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 223 -----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
|.+.+ .+..+|.++...|+.++|+.+|.......|-
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 22222 3556777778888888888888887777765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.018 Score=51.69 Aligned_cols=100 Identities=18% Similarity=0.046 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 344 (398)
..+|.+|...|+|.+|...+.+..+.+....+ ...--+++.....+|...+++.++...|.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-------------------~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD-------------------KNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-------------------THHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-------------------chhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 37899999999999999999888775542200 00011455558888999999999999998
Q ss_pred HHHHhC---CCC----hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 015907 345 RLISSY---PND----FRGYLAKGIILK-ENGKVGDAERMFIQARFF 383 (398)
Q Consensus 345 ~al~~~---p~~----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 383 (398)
++.... +.+ +.....-|..+. ..++|.+|...|-.++.-
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 886532 122 335566777888 899999999999888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.084 Score=52.56 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
...|++++|.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444555555554321 234556666666666666666666666554
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.048 Score=41.84 Aligned_cols=77 Identities=8% Similarity=-0.060 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHH-----------------hCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLIS-----------------SYPNDFR-GYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
.....+.-+.||...++|..|+..++..++ .+|.+-+ .+..+|.++.+.|+.++|+.+|...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 334444566666666666666666666662 1233332 4556777778888888888888777
Q ss_pred HhhCCCChHHHHHhh
Q 015907 381 RFFAPEKVKALVDQY 395 (398)
Q Consensus 381 l~~~p~~~~~~~~l~ 395 (398)
....|=.+.+-+-+|
T Consensus 141 f~~~~lf~~vEnliy 155 (242)
T 3kae_A 141 FGKSFLFSPVENLLL 155 (242)
T ss_dssp HHHCCCHHHHHHHHH
T ss_pred cCCccccchHHHHHh
Confidence 777766555544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=57.44 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=85.3
Q ss_pred hcc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHHh--------CCCC----------HHH
Q 015907 171 KNV-LQTRLKKYEETLSISPKDSTALEGAAVTLAE--L-GDYTRAVSLLQDLAKE--------KPSD----------PDV 228 (398)
Q Consensus 171 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~-g~~~~A~~~~~~al~~--------~p~~----------~~~ 228 (398)
.++ ++.|+..+++....+|.... ++..+.+... . .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 68899999999998886543 2233332221 2 2344677777776642 2222 234
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+...+..+...|+++-|+.+.++++...|. ....|..|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 555677778899999999999999999999 9999999999999999999999887666
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.018 Score=56.25 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH---HhccHHHHHHHHHHHHh--------cCCCC--------
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE---EKNVLQTRLKKYEETLS--------ISPKD-------- 191 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~--------~~p~~-------- 191 (398)
.+.|+.+|++..... |.... ++..+.+.. ...+--+|+..+.+.++ ..+.+
T Consensus 265 ~~~a~~~le~L~~~~---------p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 265 VDFTIDYLKGLTKKD---------PIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHHHHHHHHHHC---------GGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC---------CchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 578999999988776 65433 222222221 12334456666666653 22333
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 192 --STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 192 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
...+..-+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2355666778888999999999999999999999999999999999999999999887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.04 Score=55.14 Aligned_cols=102 Identities=6% Similarity=-0.100 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSI----SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-PSDPDVFRL 231 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 231 (398)
....+..+...+.+.|+.++|...|..+.+. -..+...|..+...|.+.|+.++|.++|+++.+.. .-+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456777778888888888888888665432 23456788888888888888888888888887643 224667777
Q ss_pred HHHHHHHccC-HHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKD-YEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~-~~~A~~~~~~al~~~p~ 258 (398)
+..++.+.|+ .++|.++|+++....-.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 7777777776 46778888888776543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.13 Score=46.47 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=79.5
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRA-VSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
......|+.+.|...+.+++.+....+-. ... ...|-.+ ...++.. ...+...++..+...|++.+
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHH
Confidence 33344578888888888888875432110 000 0111111 1111111 12345567888889999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
++..+..++..+|- +-.++..+..++...|+..+|+..|+++.+.+..
T Consensus 190 a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 190 VIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999998776543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.16 Score=50.53 Aligned_cols=172 Identities=13% Similarity=0.039 Sum_probs=101.8
Q ss_pred HHHHHhccHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 166 LSEEEKNVLQTRLK-KYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 166 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
......+++++|.. .+. .-| +...+..++..+...|.+++|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 441 111 02233667778888999999887653 23222 234567899999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL 324 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (398)
|.+..+. .+ +...|..+|..+...++++.|+.+|.++...... ..+. ......+...
T Consensus 671 A~~~~~~-----~~-~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l---------------~~l~--~~~~~~~~~~ 727 (814)
T 3mkq_A 671 ARDLLTD-----ES-AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESL---------------FLLH--SSFNNKEGLV 727 (814)
T ss_dssp HHHHHTT-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH---------------HHHH--HHTTCHHHHH
T ss_pred HHHHHHh-----hC-cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhh---------------HHHH--HHcCCHHHHH
Confidence 9988643 24 7899999999999999999999999876211000 0000 0001112223
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.++......|++..|..+|.+. .+ ......+|.+.+++++|+.+-++ ..|..
T Consensus 728 ~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~ 779 (814)
T 3mkq_A 728 TLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGD 779 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCH
T ss_pred HHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCCh
Confidence 3566666666666666655442 11 12344456666777766665432 44544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.11 Score=46.51 Aligned_cols=190 Identities=12% Similarity=0.024 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH-----
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA-----LEGAAVTLAE-LGDYTRAVSLLQDLAKEKPSDPD----- 227 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~----- 227 (398)
.+.+.+|..|...|++++-..++......-+.-+.+ ...+-..+.. .+..+.-++++..+++.....-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999888888765544333222 2222222222 34555556666666653222211
Q ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 228 -VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 228 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
.-..+|..|...|+|.+|...+.+....-.. .-.+++.....+|...+++.++...+.++......
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-------- 171 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-------- 171 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--------
Confidence 2237899999999999999999988764211 13456777888999999999999999998775431
Q ss_pred hccccccccccccccCCCc---hHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCC
Q 015907 302 KDGRSGDKKETEPQKVDPI---QVELLLGKAYS-DGGRVSDAVAVYDRLISSYPND-----FRGYLAKGIILKENGK 369 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~ 369 (398)
+..+|. .....-|..+. ..++|.+|...|-++++..... ..+...++.+-...++
T Consensus 172 -------------i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 172 -------------IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp -------------SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 112222 22333788888 8999999999999887543222 1233444555555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.085 Score=47.59 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
.+...++..+...|++.+|+..+..++..+|-+..+|..+..++...|+..+|+..|+++-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999988754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.14 Score=40.08 Aligned_cols=109 Identities=12% Similarity=0.020 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
.++...+.+ ..+.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- +.. .+..+
T Consensus 6 ~D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~~---~L~~L 69 (177)
T 3mkq_B 6 QDPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----SFD---KLSFL 69 (177)
T ss_dssp SCHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CHH---HHHHH
T ss_pred CChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CHH---HHHHH
Confidence 344444444 35789999999887765 678899999999999999999999998862 222 33445
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
|...|+.+.-...-+.+...+.. .....+++..|+++++++.|.+
T Consensus 70 y~~tg~~e~L~kla~iA~~~g~~------n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTREDF------GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHCccH------HHHHHHHHHcCCHHHHHHHHHH
Confidence 55667766655554444333211 2233445667777777777744
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.5 Score=45.26 Aligned_cols=208 Identities=11% Similarity=-0.048 Sum_probs=128.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDST----ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..+.......+.+.|...+.......+-+.. .+..++.-+...+...++...+.+.....+++.. ...++.....
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr 297 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALG 297 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHH
Confidence 3445555566888999999877654333332 2223333334445356777777776654443333 3333334456
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC--Cch-hhhccccccccccccc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--DDL-SVKDGRSGDKKETEPQ 315 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 315 (398)
.|++..|...|.++-..... .....+.+|.++...|+.++|..+|.++... .. +.+ ...+|........ ..
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~~fYg~lAa~~Lg~~~~~~~~-~~ 371 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ----RGFYPMVAAQRIGEEYELKID-KA 371 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSHHHHHHHHHTTCCCCCCCC-CC
T ss_pred CCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CChHHHHHHHHcCCCCCCCCC-CC
Confidence 79999999999877554444 6788999999999999999999999776431 11 000 0111111000000 01
Q ss_pred cCC-----CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 316 KVD-----PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 316 ~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
... +.......+..+...|....|...+..++.. .+..-...++.+....|.+..++....+
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 010 1123344777889999999999998887763 2345566788888899999888766543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.11 Score=43.56 Aligned_cols=122 Identities=20% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
.....|++++|+......++.+|.+......+..+++-.|+|+.|..-++.+.+++|.....-..+-. .-.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~-------lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH-------LVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH-------HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH-------HHHHH
Confidence 35577999999999999999999999999999999999999999999999999999986443222111 11122
Q ss_pred HHHHHHHhh--CC---CCCHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 247 AAYRVSTMV--SK---DINFE--VLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 247 ~~~~~al~~--~p---~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
..=.+++.- .| ..... ....-+......|+.++|..+-.++....+..+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 222222221 11 10122 223345555678999999999999988766554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.084 Score=52.94 Aligned_cols=97 Identities=7% Similarity=-0.108 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKE----KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
..+..+...|.+.|+.++|..+|..+.+. -.-+...|..+...|.+.|+.++|.++|+++....-..+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46888899999999999999999776432 23357889999999999999999999999998876444688999999
Q ss_pred HHHHHcCCc-hHHHHHHHHHHH
Q 015907 269 NALLAAKKP-DEAVQFLLASRE 289 (398)
Q Consensus 269 ~~~~~~~~~-~~A~~~~~~a~~ 289 (398)
..+.+.|+. ++|..+|+++..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHH
Confidence 999999985 688899988866
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.43 Score=37.29 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
.+++..+.++ ...|+++.|.+..+.+ ++...|..+|......|+++-|+.+|.++- +.. .+..
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~---~L~~ 68 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH------SFD---KLSF 68 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHH---HHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHH---HHHH
Confidence 3455555554 5679999999987765 568899999999999999999999998762 222 3445
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+|.-.|+.+.-...-+.+.. ..-+.....++..+|+++++++.|.+.
T Consensus 69 Ly~~tg~~e~L~kla~iA~~------------------------------~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQT------------------------------REDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHHH------------------------------TTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHH------------------------------CccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 56667776554444333311 011122445667789999999988653
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.078 Score=49.28 Aligned_cols=77 Identities=18% Similarity=0.039 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++..... .+.+..++..++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P-f~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC-ChhHHHHHHHHH
Confidence 34445555555555555666666666666665556666665555555555555555555554433 455555554444
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.099 Score=48.57 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.+..+|........+..|..+|.++..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5567888888888899999999999999999999999999999999999999999999998766678888888776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.59 Score=48.62 Aligned_cols=117 Identities=12% Similarity=-0.010 Sum_probs=86.5
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK----------------------- 222 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------- 222 (398)
..+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++..--
T Consensus 820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34445555554433 334567788888999999999999999999998873210
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH----HHHHHHHHHHHcCCchHHHHHHHH
Q 015907 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE----VLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 223 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
...+..|..+..++...+.++.+++..+.|++..+..+.. .|..+-..+...|+|++|...+..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 1123456777788889999999999999999876542432 577788888999999999888744
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=2.1 Score=40.94 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=46.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+++......|+++.|..+|..+-..........+.+|..+..+|+.++|..+|+++..
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444455679999999999876553345677889999999999999999999999875
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.98 Score=37.81 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=54.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+.+.|+.++|++.+...++..|.+......+..++.-.|+++.|...++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4567899999999999999999999999999999999999999999999999999998
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=2.4 Score=38.88 Aligned_cols=188 Identities=14% Similarity=0.010 Sum_probs=116.6
Q ss_pred hccHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-Hcc
Q 015907 171 KNVLQTRLKKYEETLSI------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK---Y-ELK 240 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~-~~g 240 (398)
.|+++.|++.+....+. .+....+...+..++...|+|+...+++.-..+.......+-..+.... . ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788888776443322 2334667888888999999999888877665554433333222222111 1 112
Q ss_pred CHHHHHHHHHHHHhhC----CC-C-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 241 DYEGSAAAYRVSTMVS----KD-I-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~----p~-~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
..+. ......+..- .. . .......|+.++...|++.+|...+.....-..
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~------------------ 168 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY------------------ 168 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------------------
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------------
Confidence 2111 1111222211 10 0 123457789999999999999999877643221
Q ss_pred ccccccCCC----chHHHHHHHHHHhCCChHHHHHHHHHHHH---hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 311 ETEPQKVDP----IQVELLLGKAYSDGGRVSDAVAVYDRLIS---SYPND----FRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 311 ~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
...+ .+.+.....+|...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|..+|..
T Consensus 169 -----~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 169 -----GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp -----SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111 13555588889999999999999988642 23333 24567788888999999999999988
Q ss_pred HHhh
Q 015907 380 ARFF 383 (398)
Q Consensus 380 al~~ 383 (398)
++..
T Consensus 244 ~~~~ 247 (445)
T 4b4t_P 244 IYQT 247 (445)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.15 Score=46.73 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHH----HH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFE----VL 264 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~----~~ 264 (398)
.++..+|..|...|++++|.+.|.++..... ...+.+..+..++...+++..+..++.++...... .++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556666667777777777777666655322 22455666666666667777776666666443111 0111 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
...|.++...++|..|...|..+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 3345555566667776666655543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.19 Score=46.02 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVS--KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
..++..+|..|...|++++|.+.|.++.... +..-.+.+..+..++...+++..+...+.++.......+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-------- 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-------- 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--------
Confidence 4578899999999999999999999988753 222467888899999999999999999999877654331
Q ss_pred cccccccccccccCCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 304 GRSGDKKETEPQKVDPI---QVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
++. ......|.++...++|.+|...|-.++....
T Consensus 203 --------------d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 203 --------------DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp --------------CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred --------------CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 222 2333478888899999999999988876443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.04 E-value=2 Score=44.65 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---C----------------
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV---S---------------- 256 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~---------------- 256 (398)
..+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345555667777766654 44566778888899999999999999999999887321 0
Q ss_pred -C--CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC
Q 015907 257 -K--DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG 333 (398)
Q Consensus 257 -p--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 333 (398)
+ ...+..|..+..++...+.++.+++..+.|+....... ...+...|..+=..+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~--------------------~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD--------------------EDLSIAITHETLKTACAA 951 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC--------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC--------------------hhhHHHHHHHHHHHHHhh
Confidence 0 01234567788888999999999999888877533220 000123455577778888
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVG 371 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 371 (398)
|+|++|...+...-. ...-...+..+...+++.|..+
T Consensus 952 ~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 952 GKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCChh
Confidence 999999877754422 2223445555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=3.7 Score=37.55 Aligned_cols=171 Identities=6% Similarity=-0.088 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC----CC--
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLA----ELGDYTRAVSLLQDLAKEK----PS-- 224 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~----p~-- 224 (398)
+....+...+...+...++++...+.+.-..........+...+..... .....+. ......+... .+
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccch
Confidence 4455666677778888899988877776555544444333332222211 1122221 1112222211 11
Q ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 225 -----DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK--D---INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 225 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
.......|+.++...|++.+|...+.....-.- . .-.+.+.....++...+++.+|...+.++.......
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 134567899999999999999999998764311 1 024577888999999999999999998875422111
Q ss_pred CCCchhhhccccccccccccccCCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 295 KSDDLSVKDGRSGDKKETEPQKVDPI---QVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
...|. ..+...|.++...++|.+|-.+|..++.
T Consensus 211 ---------------------~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 ---------------------PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ---------------------SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---------------------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11111 2334489999999999999999988875
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.24 Score=45.82 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPND-------FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.+..+-..|...+.+++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44458899999999999999999884 4532 4567889999999999999999999999988765
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.38 Score=44.48 Aligned_cols=130 Identities=10% Similarity=0.044 Sum_probs=54.9
Q ss_pred HHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHccCHHHHH----------HHHHHHHhh-----
Q 015907 202 LAELGDYTRAVSLLQDLAK---E--------KPSDPDVFRLLGEVKYELKDYEGSA----------AAYRVSTMV----- 255 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 255 (398)
+...+++++|..+-..++. + ++-...+|+.++.++...|+..... ..+-.++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4556777777777665541 1 2223456666666666666654422 222222222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhC
Q 015907 256 SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDG 333 (398)
Q Consensus 256 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~ 333 (398)
++......+..+-..|...+.+++|..+..++. ++.. ...+.. ...+++|.++.-+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--------------------~~sn~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--------------------DVSSSLEARYFFYLSKINAIQ 283 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--------------------TSCHHHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--------------------cCCHHHHHHHHHHHHHHHHHh
Confidence 332234567888899999999999999987762 2211 000111 2344589999999
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q 015907 334 GRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~ 353 (398)
++|.+|..++..|+...|.+
T Consensus 284 ~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 284 LDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp TCHHHHHHHHHHHTSSCSCS
T ss_pred ccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999877654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.84 E-value=5.8 Score=29.43 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHH--HHHHHHHHhccCCCCCCCCCCChHHH
Q 015907 83 NFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVA--VVIFGLVFALGDFLPSGSVSPTEEAG 160 (398)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A--~~~~~~a~~~~~~~~~~~~~p~~~~~ 160 (398)
+....|-.+++....+..++..++..+.....|.....|.+ -.++ +.| ..+|+..-
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~I-CNii---D~a~C~y~v~vLd------------------ 63 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFI-CNLL---ESIDCRYMFQVLD------------------ 63 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHH-HHHH---HHCCHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceee-eecc---hhhchhHHHHHHH------------------
Confidence 45567777888888888899999998888877766555544 1111 111 01111111
Q ss_pred HHHHHHHH--HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 161 VVNKELSE--EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 161 ~~~la~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..|..+ ...|+...-+.+|-+.-. +.+..-..-..+..+|.-++-.+.+...+...+-+++.+..+|.+|.+
T Consensus 64 --~IGkiFDis~C~NlKrVi~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K 137 (172)
T 1wy6_A 64 --KIGSYFDLDKCQNLKSVVECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRR 137 (172)
T ss_dssp --HHGGGSCGGGCSCTHHHHHHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH
T ss_pred --HHhhhcCcHhhhcHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 111111 123555555555544311 122222222455667777777777776666566667777788888888
Q ss_pred ccCHHHHHHHHHHHHhhC
Q 015907 239 LKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~ 256 (398)
.|+..+|.+.+.+|-+..
T Consensus 138 lg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 138 VGDERDATTLLIEACKKG 155 (172)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred hcchhhHHHHHHHHHHhh
Confidence 888888888777776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.18 E-value=19 Score=36.22 Aligned_cols=149 Identities=9% Similarity=0.031 Sum_probs=77.0
Q ss_pred hhcchh-hc--HHHHHHHHHHHHhccCCCCCCCCCCCh--HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH
Q 015907 123 IGLGTK-IG--VGVAVVIFGLVFALGDFLPSGSVSPTE--EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG 197 (398)
Q Consensus 123 ~~lg~~-~g--~~~A~~~~~~a~~~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 197 (398)
+|+|.+ .| -+.+...+..++.-+ ... ..+-+.+|.++...|+-+-....+..+.+...+...-...
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~dd---------~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYND---------SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHTC---------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHH
Confidence 456665 55 456666666666433 111 1344566777777777666566666555533222222233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDV----FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
+|..+...|+.+.+..+.+.+... .++.. -+.+|..|...|+.......+..+.. +++.+..-...+|..+..
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhc
Confidence 444445667877776666655443 23332 23456677788886555456666554 333123222233333344
Q ss_pred cCCchHHHHH
Q 015907 274 AKKPDEAVQF 283 (398)
Q Consensus 274 ~~~~~~A~~~ 283 (398)
.|+.+.+...
T Consensus 607 ~g~~e~v~rl 616 (963)
T 4ady_A 607 LRDYTTVPRI 616 (963)
T ss_dssp SSSCSSHHHH
T ss_pred cCCHHHHHHH
Confidence 5555433333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.06 E-value=5.3 Score=40.06 Aligned_cols=124 Identities=9% Similarity=0.013 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISP---K---DS----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-- 226 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 226 (398)
-+.+.+|.++...+ .+++..+...+.... . .. .+...+|.++.-.++ +++.+.+...+..+....
T Consensus 414 GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~ 490 (963)
T 4ady_A 414 GSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE 490 (963)
T ss_dssp HHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence 34555555554444 356666666665332 0 11 244456666555554 455566666655332111
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
.+-+.+|.++.-.|+.+-....+..+.....+ ...-...+|..+...|+.+.+..+++.
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChHHHHHHHHH
Confidence 23345566666666665555555544442222 222223333344455666555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.77 E-value=6 Score=29.31 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=47.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
..+..+|+-++-...+...+...+-+++.++.+|.+|.+.|+..+|.+++.+|-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 455778888888888888766677789999999999999999999999999998753
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.69 E-value=15 Score=29.20 Aligned_cols=92 Identities=7% Similarity=-0.022 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHh--CCCChHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS--YPNDFRGY 357 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 357 (398)
.+++++...+...+. ...+|..+.+| .+..+ ..+...++..+|..+... .-..+..|
T Consensus 58 ~lLErc~~~F~~~~r------------------YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfY 118 (202)
T 3esl_A 58 STMERCLIYIQDMET------------------YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFY 118 (202)
T ss_dssp HHHHHHHHHHTTCGG------------------GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHH
T ss_pred HHHHHHHHHhccccc------------------ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHH
Confidence 578888877665533 34444444444 44433 245577889999888764 44567888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
...|..+...|++.+|.+.|+.+++..-.-.+-+.
T Consensus 119 e~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 119 EEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 99999999999999999999999987654444333
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.60 E-value=11 Score=38.18 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=17.2
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 186 SISPKDSTALEGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 218 (398)
..-|.++..-+.+|.+|...|++++|..+|+++
T Consensus 834 ~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 834 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444455555555555555555555543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.27 E-value=13 Score=37.64 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CC-------------------
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SK------------------- 257 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p------------------- 257 (398)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.- ..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556667778877554 355677888888899999999999999999999987421 10
Q ss_pred -C-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 258 -D-INFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 258 -~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
. .....|..+..++...+-++-++...+.|+...
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 0 012356677888888888888888888887643
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=81.03 E-value=17 Score=27.89 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 338 DAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 338 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
++..+|..+... .-..+..|...|..+...|++.+|.++|+.+++....-.+-+..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 366677777653 34567888899999999999999999999999876554444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 398 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 8e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (183), Expect = 2e-15
Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 26/237 (10%)
Query: 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSL 214
P N + + + +E+ +++ P A L E + RAV+
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 215 LQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274
P+ V L V YE + + YR + + + L NAL
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEK 284
Query: 275 KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG 334
EA L + G
Sbjct: 285 GSVAEAEDC-------------------------YNTALRLCPTHADSLNNLANIKREQG 319
Query: 335 RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
+ +AV +Y + + +P + +L++ GK+ +A + +A +P A
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 3e-08
Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 8/210 (3%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
+ + P ++ L + + R+ K+ P + + LG V
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK------KPDEAVQFLLASRERL 291
E + + YR + + D + + A A+Q+
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Query: 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVE--LLLGKAYSDGGRVSDAVAVYDRLISS 349
S + ++ + + P LG ++ G + A+ +++ ++
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 350 YPNDFRGYLAKGIILKENGKVGDAERMFIQ 379
PN Y+ G +LKE A +++
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 4e-08
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
++ Y + L + P+ + A A L + G A+ ++ + P+ D + +G
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Query: 238 ELKD 241
E++D
Sbjct: 385 EMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 26/164 (15%)
Query: 222 KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281
+P+ + LG V + + + + + + + L N L A+ D AV
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAV 223
Query: 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341
L + + V L Y + G + A+
Sbjct: 224 AAYLRALS-------------------------LSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
Y R I P+ Y LKE G V +AE + A P
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 8e-07
Identities = 10/68 (14%), Positives = 19/68 (27%)
Query: 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383
+ L G A +L P++ L I + ++ + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 384 APEKVKAL 391
P +A
Sbjct: 63 NPLLAEAY 70
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 9e-06
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258
A + GD+ A L +++P + V LL + ++ + + SA ++ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 259 INFEVLRGLTNALL 272
E L N
Sbjct: 66 -LAEAYSNLGNVYK 78
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 143 ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202
A+ + + + P N + +EK + Y L + P + +L A
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262
E G+ AV L + + P L V + + + Y+ + +S +
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FAD 374
Query: 263 VLRGLTNAL 271
+ N L
Sbjct: 375 AYSNMGNTL 383
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 53.5 bits (128), Expect = 1e-08
Identities = 19/112 (16%), Positives = 38/112 (33%)
Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
L+ E + SPKD++ L GD+ RA L K P L +
Sbjct: 16 LELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75
Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289
+ + A + ++ ++ N + ++ ++ + L E
Sbjct: 76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.7 bits (100), Expect = 3e-05
Identities = 16/149 (10%), Positives = 35/149 (23%), Gaps = 27/149 (18%)
Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVL 264
G +A+ LL + K P D + E+ D+E + +
Sbjct: 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLM--QSIKLFPEYLPGA 67
Query: 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL 324
L + + AA+ + Q G + + + L
Sbjct: 68 SQLRHLVKAAQARKDFAQ------------------------GAATAKVLGENEELTKSL 103
Query: 325 LLGKAYSDGGRVSDAVAVYDRLISSYPND 353
+ + ++
Sbjct: 104 VSFNLSMVSQDYEQVSELALQIEELRQEK 132
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.5 bits (89), Expect = 9e-04
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391
G++ A+ + I + P D + +L +G A+ +Q+ PE +
Sbjct: 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 4e-06
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK 222
+K EE+N L+ + +EE + + GD AV L + ++
Sbjct: 5 DKGYQFEEENPLRDHPQPFEE---------------GLRRLQEGDLPNAVLLFEAAVQQD 49
Query: 223 PSDPDVFRLLGEVKYELKDYEGSAAAYR 250
P + ++ LG + E + + +A R
Sbjct: 50 PKHMEAWQYLGTTQAENEQELLAISALR 77
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.8 bits (89), Expect = 8e-04
Identities = 22/229 (9%), Positives = 47/229 (20%), Gaps = 31/229 (13%)
Query: 166 LSEEEKNVLQTRLKKYEETLSISPKDS-TALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224
LS + L+ L ++ V ++ L S
Sbjct: 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176
Query: 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
+ + + +L S R+ V L D++ F
Sbjct: 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-----LVQNAFFTDPNDQSAWF- 230
Query: 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344
+ +P+ L + + ++
Sbjct: 231 ------------------------YHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266
Query: 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393
L + L + + F + P + L D
Sbjct: 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.7 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.55 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.54 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.53 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.45 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.26 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.19 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.15 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.06 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.85 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.46 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.2 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.12 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 88.23 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-32 Score=245.55 Aligned_cols=293 Identities=16% Similarity=0.156 Sum_probs=239.9
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
+......+++++|++.|++++..+|+++..+.. +|.+ .| ++.|+..|.+++.+. |.++.+|..+|.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~a~~~l~~ 75 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAIKQN---------PLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Confidence 344557788999999999999999999988877 8877 77 999999999999998 999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCC---------------------------------------------------------
Q 015907 167 SEEEKNVLQTRLKKYEETLSISP--------------------------------------------------------- 189 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p--------------------------------------------------------- 189 (398)
++...|++++|+..+..++...|
T Consensus 76 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
T d1w3ba_ 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhH
Confidence 99999999999888877665443
Q ss_pred -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 190 -----------KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 190 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+.+.++..+|.++...|++++|...++++++.+|++..++..+|.++...|++++|+..|++++...|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 344566777888888888888888888888888888888888888888888888888888888888887
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCch--HHHHHHHH
Q 015907 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQ--VELLLGKA 329 (398)
Q Consensus 259 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~la~~ 329 (398)
....+..+|.++...|++++|+..|+++++..+..+. +.+....++... ..+..+....|.. .+..+|.+
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH
Confidence 7888888888888888888888888887776655543 222233333332 2233344455554 44559999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 330 YSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++++|.++
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-27 Score=212.55 Aligned_cols=231 Identities=17% Similarity=0.176 Sum_probs=201.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| +++|+..|++++..+ |.++.+|..+|.++...|++++|+.+|.++++++|++..++..+|.+|...|+
T Consensus 32 ~g~~~~A~~~~~~al~~~---------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQD---------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp TTCHHHHHHHHHHHHHSC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 78 999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVF---------------RLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNAL 271 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~ 271 (398)
+++|+..+++++...|.....+ ......+...+.+.+|+..|.+++.++|+. ++.++..+|.++
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999999999988753321 112233455678899999999999999873 567899999999
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
...|++++|+..|++++... .+...++..+|.++...|++++|+.+|+++++++|
T Consensus 183 ~~~~~~~~A~~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR-------------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhcccccccccc-------------------------cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 99999999999999986632 22345667799999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 352 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+++.+++.+|.+|..+|++++|+..|+++++++|++..++..
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 999999999999999999999999999999999998776543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.9e-26 Score=206.79 Aligned_cols=234 Identities=19% Similarity=0.193 Sum_probs=216.9
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
.....+...+...+...|+....+.. +|.. .| ++.|...+.+++.+. |.++.++..+|.++...|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~~ 218 (388)
T d1w3ba_ 149 GRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD---------PNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTTTC
T ss_pred chhhhhHHHHHHhhccCcchhHHHHh-hcccccccCcHHHHHHHHHHHHHhC---------cccHHHHHHHhhhhhcccc
Confidence 34455667777788889998888777 7777 67 999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+..|+++....|.....+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..++.++
T Consensus 219 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYS 331 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~ 331 (398)
...|. +...+..++.++...|++++|+.+|+++ +..+|. .++..+|.+|.
T Consensus 299 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------------------l~~~p~~~~~~~~la~~~~ 350 (388)
T d1w3ba_ 299 RLCPT-HADSLNNLANIKREQGNIEEAVRLYRKA---------------------------LEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH---------------------------TTSCTTCHHHHHHHHHHHH
T ss_pred ccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHH---------------------------HHhCCCCHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999988 445555 45666999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
..|++++|+.+|+++++++|+++.++.++|.+|.++|+
T Consensus 351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2e-25 Score=198.05 Aligned_cols=253 Identities=15% Similarity=0.139 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
++........+++++|+..|++++..+|++++++.. +|.+ .| ++.|+..|.+++.+. |.+...|..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-lg~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~ 92 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY-LGTTQAENEQELLAISALRRCLELK---------PDNQTALMA 92 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHhhhccc---------ccccccccc
Confidence 445666778899999999999999999999999988 8888 77 999999999999999 999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTAL---------------EGAAVTLAELGDYTRAVSLLQDLAKEKPSD--P 226 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 226 (398)
+|.++...|++++|+..+++++...|.....+ ......+...+.+.+|+..+.++++++|+. +
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~ 172 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999988754321 122233456678899999999999999864 6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|.++...|++++|+..|++++..+|+ ++.+|..+|.++...|++++|+.+|+++++..
T Consensus 173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 236 (323)
T d1fcha_ 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------------- 236 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred ccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh---------------
Confidence 78899999999999999999999999999999 99999999999999999999999999997632
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-----------HHHHHHHHHHHcCCHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-----------GYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------~~~~la~~~~~~g~~~~A~~ 375 (398)
.+...++..+|.+|...|++++|+..|+++++++|++.. +|..++.++..+|+.+.+..
T Consensus 237 ----------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 237 ----------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred ----------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 222456777999999999999999999999999888754 45667777777777765544
Q ss_pred H
Q 015907 376 M 376 (398)
Q Consensus 376 ~ 376 (398)
.
T Consensus 307 ~ 307 (323)
T d1fcha_ 307 A 307 (323)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.2e-24 Score=189.10 Aligned_cols=209 Identities=12% Similarity=0.049 Sum_probs=190.3
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
|....++..+|.++...+.+++|+.+++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|..+|
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 7788899999999999999999999999999999999999999999999987 599999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
.++..+|++++|+..+.++++++|. +..+|..+|.++...|++++|+..++++++.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~----------------------- 175 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----------------------- 175 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----------------------
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------------------
Confidence 9999999999999999999999999 9999999999999999999999999999662
Q ss_pred cccCCCchHHHHHHHHHHhCCC------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 314 PQKVDPIQVELLLGKAYSDGGR------VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 314 ~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.+....+|.++|.++...+. +++|+..+.++++++|++..+|..++.++...| ..++...+.+++++.|+.
T Consensus 176 --~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 176 --DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred --CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCc
Confidence 22224567779999888776 589999999999999999999999999876554 688999999999998876
Q ss_pred hHH
Q 015907 388 VKA 390 (398)
Q Consensus 388 ~~~ 390 (398)
...
T Consensus 253 ~~~ 255 (315)
T d2h6fa1 253 SSP 255 (315)
T ss_dssp CCH
T ss_pred CCH
Confidence 443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.2e-23 Score=180.31 Aligned_cols=227 Identities=10% Similarity=-0.030 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
.+.++..+.+++.... ...+..+.+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.+|..+|++++
T Consensus 15 ~e~al~~~~e~l~~~~-----~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 15 QEVILARMEQILASRA-----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHTSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhh-----cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence 5566666777665431 11255678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++.+|. +......++..+...+..+.+.........
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 167 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred hhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-
Confidence 999999999999999999999999999999999999999999999999 888888888888887776655555444322
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
..+......+...+.. .+.++.+...+...+...|....+++.+|.+|..
T Consensus 168 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 221 (259)
T d1xnfa_ 168 --------------------------SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 221 (259)
T ss_dssp --------------------------SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH
Confidence 1112211222222222 2234555556666666777788899999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHH
Q 015907 367 NGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 367 ~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
+|++++|+.+|++++..+|++...
T Consensus 222 ~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 222 LGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp TTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 999999999999999999987543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.4e-23 Score=183.44 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=191.6
Q ss_pred cCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhc
Q 015907 113 DAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN-VLQTRLKKYEETLSI 187 (398)
Q Consensus 113 ~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 187 (398)
..|+..+++.. +|.+ .+ +++|+..+.+++.++ |.+..+|+.+|.++...| ++++|+.+++++++.
T Consensus 38 ~~p~~~~a~~~-~~~~~~~~e~~~~Al~~~~~ai~ln---------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~ 107 (315)
T d2h6fa1 38 YSDKFRDVYDY-FRAVLQRDERSERAFKLTRDAIELN---------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107 (315)
T ss_dssp CCHHHHHHHHH-HHHHHHHTCCCHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHH-HHHHHHhCCchHHHHHHHHHHHHHC---------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 34555666555 5555 44 889999999999999 999999999999999887 599999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
+|++..+|..+|.++..+|++++|+..+.++++++|++..+|..+|.++...|++++|+.+|+++++++|. +..+|..+
T Consensus 108 ~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r 186 (315)
T d2h6fa1 108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQR 186 (315)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCC------chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 268 TNALLAAKK------PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 268 a~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
|.++...+. +++|+..+.++++..+ ....++.+++.++... ..+++..
T Consensus 187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-------------------------~~~~~~~~l~~ll~~~-~~~~~~~ 240 (315)
T d2h6fa1 187 YFVISNTTGYNDRAVLEREVQYTLEMIKLVP-------------------------HNESAWNYLKGILQDR-GLSKYPN 240 (315)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHTTT-CGGGCHH
T ss_pred HHHHHHccccchhhhhHHhHHHHHHHHHhCC-------------------------CchHHHHHHHHHHHhc-ChHHHHH
Confidence 999988877 4689999988866322 2235666688876554 4688899
Q ss_pred HHHHHHHhCCCC--hHHHHHHHHHHHHc--CCHHHHHHHHHHHHh
Q 015907 342 VYDRLISSYPND--FRGYLAKGIILKEN--GKVGDAERMFIQARF 382 (398)
Q Consensus 342 ~~~~al~~~p~~--~~~~~~la~~~~~~--g~~~~A~~~~~~al~ 382 (398)
.+++++++.|+. ..++..++.+|... ++.+.+...+.+++.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 241 LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999998888764 55666777777543 444455555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=1.3e-24 Score=193.90 Aligned_cols=255 Identities=9% Similarity=-0.032 Sum_probs=189.1
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh-------------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK-------------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~-------------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
++|+.++++++..+|++..+|.. .+.+ .| +..|+.++..++... |.+..+|+.+|.
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~-r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~---------pk~~~~~~~~~~ 115 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNC-RREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------PKSYGTWHHRCW 115 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH-HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC---------CCcHHHHHHhhH
Confidence 68888899999999988877643 2211 33 566777777777777 777777777777
Q ss_pred HHHHhcc--HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 167 SEEEKNV--LQTRLKKYEETLSISPKDSTAL-EGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 167 ~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
++...++ +++|+..+++++..+|.+..++ ..+|.++...+.+++|+..++++++.+|.+..+|+.+|.++..+|+++
T Consensus 116 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH
Confidence 6666553 6777777777777777776665 345566667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE 323 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (398)
+|+..+.+++.+.|. ....+ ..+...+..+++...+.+++.. .......+
T Consensus 196 ~A~~~~~~~~~~~~~-~~~~~----~~~~~l~~~~~a~~~~~~~l~~-------------------------~~~~~~~~ 245 (334)
T d1dcea1 196 DSGPQGRLPENVLLK-ELELV----QNAFFTDPNDQSAWFYHRWLLG-------------------------RAEPLFRC 245 (334)
T ss_dssp CSSSCCSSCHHHHHH-HHHHH----HHHHHHCSSCSHHHHHHHHHHS-------------------------CCCCSSSC
T ss_pred HHHHHHHHhHHhHHH-HHHHH----HHHHHhcchhHHHHHHHHHHHh-------------------------CcchhhHH
Confidence 777777766666655 33322 2334456666677777666441 12222344
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 324 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
..++.++...|++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|++...|.++-
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999999999999999999888763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=6.6e-20 Score=156.69 Aligned_cols=203 Identities=14% Similarity=0.152 Sum_probs=157.8
Q ss_pred chhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH
Q 015907 117 ETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS 192 (398)
Q Consensus 117 ~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 192 (398)
....+.. +|.+ .| ++.|+..|.+++.++ |+++.+|+.+|.++...|++++|+..|+++++++|+++
T Consensus 36 ~a~~~~~-~G~~y~~~g~~~~A~~~~~~al~l~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 105 (259)
T d1xnfa_ 36 RAQLLYE-RGVLYDSLGLRALARNDFSQALAIR---------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 105 (259)
T ss_dssp HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHH-HHHHHHHCCCHHHHHHHHHHhhccC---------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh
Confidence 3445555 7777 78 999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.++..+|.++..+|++++|+..|+++++.+|.+......++.++...+..+.+...........+. ... ..+ +..
T Consensus 106 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~~ 180 (259)
T d1xnfa_ 106 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE-QWG--WNI--VEF 180 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC-STH--HHH--HHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh-hhh--hhH--HHH
Confidence 999999999999999999999999999999999998888888888888777776666666665554 322 112 222
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
..+...... .+..+....... ....| ..+++++|.+|...|++++|+.+|++++..+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 181 YLGNISEQT-LMERLKADATDN--------------------TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HTTSSCHHH-HHHHHHHHCCSH--------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HHHHHHHHHHHh--------------------hhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 233322211 122222211110 11122 3466779999999999999999999999999
Q ss_pred CCChH
Q 015907 351 PNDFR 355 (398)
Q Consensus 351 p~~~~ 355 (398)
|++..
T Consensus 240 p~~~~ 244 (259)
T d1xnfa_ 240 VHNFV 244 (259)
T ss_dssp CTTCH
T ss_pred CCCHH
Confidence 98753
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=8.5e-20 Score=162.25 Aligned_cols=226 Identities=7% Similarity=-0.079 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH----------HhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE----------EKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~----------~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.++|+.++.+++.++ |++..+|..++.++. ..|++++|+.+++++++.+|+++.+|..+|.
T Consensus 45 ~~~al~~~~~~l~~~---------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~ 115 (334)
T d1dcea1 45 DESVLELTSQILGAN---------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (334)
T ss_dssp SHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhH
Confidence 578999999999999 999988876665544 4566899999999999999999999999999
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc
Q 015907 201 TLAELGD--YTRAVSLLQDLAKEKPSDPDVF-RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP 277 (398)
Q Consensus 201 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~ 277 (398)
++...++ +++|+..+.++++.+|.+..++ ..+|.++...+.+++|+..+++++..+|. +..+|..+|.++...|++
T Consensus 116 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCH
Confidence 9888765 8999999999999999998886 46778999999999999999999999999 999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGY 357 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 357 (398)
++|+..+.++... .|... .....+...+..+++...|.+++...|.....+
T Consensus 195 ~~A~~~~~~~~~~---------------------------~~~~~--~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~ 245 (334)
T d1dcea1 195 PDSGPQGRLPENV---------------------------LLKEL--ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC 245 (334)
T ss_dssp CCSSSCCSSCHHH---------------------------HHHHH--HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHhHHh---------------------------HHHHH--HHHHHHHHhcchhHHHHHHHHHHHhCcchhhHH
Confidence 9988777655442 22221 234445666778899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
..++.++...|++.+|+..+.+++..+|++..+|+.+.
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 283 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 283 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 99999999999999999999999999999999887753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.9e-19 Score=167.00 Aligned_cols=221 Identities=11% Similarity=-0.029 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
+|+.+|++++.+. |+.+.+++++|.++...|++++| |++++..+|+........+.+. ...|..++
T Consensus 4 eA~q~~~qA~~l~---------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLK---------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHHH---------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHH
T ss_pred HHHHHHHHHHHcC---------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHH
Confidence 6889999999999 99999999999999999999886 8999999987766654333332 23367788
Q ss_pred HHHHHHHHhCC--CCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 213 SLLQDLAKEKP--SDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 213 ~~~~~al~~~p--~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+.+++..+... +... ....++.+....+.|+.|+..+.+++.++|+ +...+..+|.++...|++++|+..+.+++.
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP-CRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChh-hHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 88888886542 2222 2334566677788999999999999999999 899999999999999999999999988744
Q ss_pred HhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 290 RLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
.++...+.++|.++...|++++|+.+|+++++++|++..+++++|.++...|+
T Consensus 149 ---------------------------~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~ 201 (497)
T d1ya0a1 149 ---------------------------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD 201 (497)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC
T ss_pred ---------------------------CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC
Confidence 44567888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 370 VGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 370 ~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
+.+|+.+|.+++..+|..+.++.|+-
T Consensus 202 ~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 202 HLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999998864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-17 Score=122.34 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
-+...|..++..|++++|+.+|.++++.+|+++.+|..+|.+|..+|++++|+..+.++++++|+++.+|+.+|.++..+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
|++++|+..|+++++++|+ ++.++..++.+.
T Consensus 85 ~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~l~ 115 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 115 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHh
Confidence 9999999999999999999 999999988765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1e-16 Score=142.47 Aligned_cols=267 Identities=12% Similarity=-0.001 Sum_probs=208.3
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchh-----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETE-----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~-----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
....+++++|+.+|++++...|.+.. ++.. +|.+ .| ++.|+..|..++.+.... ...+....++..+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~-lg~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSV-LGEVLHCKGELTRSLALMQQTEQMARQH---DVWHYALWSLIQQ 97 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHH
Confidence 34678899999999999998887643 3333 5655 78 999999999998765211 1113445678889
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPK--------DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVFRL 231 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 231 (398)
+.++...|++..|...+.+++...+. ...++..+|.++...|+++.|...+.+++...+.. ..++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 99999999999999999999875321 23467789999999999999999999999876543 456778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC------CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDI------NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGR 305 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (398)
.+.++...+++..+...+.++....+.. ...++..++.++...|++++|..++.++....+..
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 246 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN----------- 246 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-----------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-----------
Confidence 8999999999999999999988764321 23467788999999999999999997763321111
Q ss_pred cccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 306 SGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS------YPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
.......+..+|.++...|++++|+..+++++.. .|....++..+|.+|..+|++++|+..+++
T Consensus 247 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 247 ----------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0001123445999999999999999999999853 344567899999999999999999999999
Q ss_pred HHhhCC
Q 015907 380 ARFFAP 385 (398)
Q Consensus 380 al~~~p 385 (398)
++++.+
T Consensus 317 Al~l~~ 322 (366)
T d1hz4a_ 317 ALKLAN 322 (366)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.6e-16 Score=124.73 Aligned_cols=127 Identities=8% Similarity=0.046 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..+...|..++..|+|++|+.+|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|++..+|..+|.++..
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH--HHcCCchHHHHHHHH
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL--LAAKKPDEAVQFLLA 286 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~--~~~~~~~~A~~~~~~ 286 (398)
+|++++|+..|++++.++|+ +..++..++.+. ...+.+++|+.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 139 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 139 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 99999999999999999999 999988887665 344556677665433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=4.4e-15 Score=129.77 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH--------------HhccHHHHHHHHHHHHhc-CCCCHHHHH
Q 015907 132 GVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE--------------EKNVLQTRLKKYEETLSI-SPKDSTALE 196 (398)
Q Consensus 132 ~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~~l~~-~p~~~~~~~ 196 (398)
..+..+|++++... |.++..|+..+..+. ..+..++|...|++++.. .|.+...|.
T Consensus 33 ~Rv~~vyerAl~~~---------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~ 103 (308)
T d2onda1 33 KRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHH
Confidence 44566778887777 788888877665443 344568999999999975 788899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-Hc
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDP-DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL-AA 274 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~-~~ 274 (398)
.++.++...|+++.|...|++++...|.+. .+|..++......|+++.|..+|++++...|. ....+...+.... ..
T Consensus 104 ~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~ 182 (308)
T d2onda1 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999764 57899999999999999999999999999999 8888888887754 46
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh
Q 015907 275 KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 354 (398)
|+.+.|..+|++++...+. ....+...+..+...|++++|..+|++++...|.++
T Consensus 183 ~~~~~a~~i~e~~l~~~p~-------------------------~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 183 KDKSVAFKIFELGLKKYGD-------------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred cCHHHHHHHHHHHHHhhhh-------------------------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 8999999999999774332 235566689999999999999999999999877554
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 355 ----RGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 355 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
..|..........|+.+.+..+++++.++.|+..
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4788888888899999999999999999998763
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=5.4e-17 Score=140.79 Aligned_cols=212 Identities=12% Similarity=-0.006 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSIS------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDV 228 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 228 (398)
|...|.+|...+++++|+.+|.+++++. +....++..+|.+|..+|++++|+..|++++++.+.. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 4455788999999999999999999873 2234689999999999999999999999999976544 467
Q ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhh
Q 015907 229 FRLLGEVKYE-LKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK 302 (398)
Q Consensus 229 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 302 (398)
+..+|.++.. .|++++|+.+|++++.+.+.. ...++..+|.++..+|+|++|+..|+++....+..+.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~------ 193 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL------ 193 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT------
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh------
Confidence 8889988865 699999999999999874331 2446889999999999999999999998775543311
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHH--cCCHHHHHH
Q 015907 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-----GYLAKGIILKE--NGKVGDAER 375 (398)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g~~~~A~~ 375 (398)
........+...+.++...|++..|...++++++++|.... ....+..++.. .+.+++|+.
T Consensus 194 ------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 194 ------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp ------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred ------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 11111134455889999999999999999999999886543 34455555544 356899999
Q ss_pred HHHHHHhhCCCChHH
Q 015907 376 MFIQARFFAPEKVKA 390 (398)
Q Consensus 376 ~~~~al~~~p~~~~~ 390 (398)
.|.++.+++|-....
T Consensus 262 ~y~~~~~lD~~~~~~ 276 (290)
T d1qqea_ 262 EFDNFMRLDKWKITI 276 (290)
T ss_dssp HHTTSSCCCHHHHHH
T ss_pred HHHHHhhcCHHHHHH
Confidence 998888877644433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.1e-15 Score=123.48 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+++.|..+...|++++|+..|.+ +.|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+|
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 45679999999999999999986 356788999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC---------------CHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 241 DYEGSAAAYRVSTMVSKDI---------------NFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
++++|+..|++++...+.. ..++++++|.++...|++++|++.+.+++.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999865431 146789999999999999999999988865
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.3e-16 Score=125.04 Aligned_cols=148 Identities=15% Similarity=0.010 Sum_probs=121.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
++..|..+...|+|++|+..|.+ +.|.++.+|+++|.+|..+|++++|+..|+++++++|+ ++.+|.++|.++..+
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhh
Confidence 45679999999999999999986 46677899999999999999999999999999999999 999999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh
Q 015907 275 KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 354 (398)
|++++|+..|++++...+.++.... .. +-......+..+++++|.++...|++++|+..+.+++.+.|+..
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~-~~--------~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDY-KI--------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEEC-GG--------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccHHHHHHHHHHHHHhCccCchHHH-HH--------hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999876554422000 00 00001122335677799999999999999999999999888753
Q ss_pred H
Q 015907 355 R 355 (398)
Q Consensus 355 ~ 355 (398)
.
T Consensus 155 ~ 155 (192)
T d1hh8a_ 155 H 155 (192)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.2e-15 Score=135.30 Aligned_cols=226 Identities=14% Similarity=0.002 Sum_probs=184.6
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE-----EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALE 196 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~ 196 (398)
.| ++.|+.++++++... |.+ ..++..+|.++...|++++|+..|++++...|.. ..++.
T Consensus 25 ~g~~~~A~~~~~~aL~~~---------~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEEL---------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp TTCHHHHHHHHHHHHHTC---------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC---------cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 78 999999999999877 543 4578889999999999999999999998865432 35678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----CHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPS--------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI----NFEVL 264 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~ 264 (398)
.++.++...|++..|...+.+++.+.+. ....+..+|.++...|+++.+...+.+++...+.. ...++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 8999999999999999999999875321 23467788999999999999999999999876542 34577
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~ 342 (398)
..++..+...+++.++...+.++........ ...+. ..+..++.++...|++++|...
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 235 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGK--------------------YHSDWISNANKVRVIYWQMTGDKAAAANW 235 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC--------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc--------------------ccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8889999999999999999998877655331 11111 2344489999999999999999
Q ss_pred HHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 343 YDRLISSYPND----FRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 343 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
+++++...|.+ ...+.++|.++...|++++|+..+++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 280 (366)
T d1hz4a_ 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 280 (366)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999877654 456778999999999999999999999854
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=4.4e-16 Score=134.96 Aligned_cols=187 Identities=11% Similarity=0.017 Sum_probs=146.9
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP------SDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~ 244 (398)
.++|++|..+|.++ |.+|...|+|++|+..|.+++++.+ ....++..+|.+|..+|++++
T Consensus 30 ~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~ 95 (290)
T d1qqea_ 30 SYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (290)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence 45678888777664 8899999999999999999998732 224679999999999999999
Q ss_pred HHHHHHHHHhhCCCC-----CHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 245 SAAAYRVSTMVSKDI-----NFEVLRGLTNALLA-AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 245 A~~~~~~al~~~p~~-----~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
|+.+|++++.+.+.. ...++..+|.++.. .|++++|+.+|+++..+.+.... ...
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-------------------~~~ 156 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-------------------VAL 156 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------------------HHH
T ss_pred HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-------------------hhh
Confidence 999999999886541 14578889988865 69999999999999876543211 011
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-------RGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
...++..+|.++..+|+|++|+..|++++...+... ..+...+.++...|++..|...++++++++|..+..
T Consensus 157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence 123455699999999999999999999999887763 456788999999999999999999999999876543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1.8e-16 Score=129.56 Aligned_cols=101 Identities=10% Similarity=0.108 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCC
Q 015907 238 ELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+|++++|+..|++++.++|+
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999998876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.3e-15 Score=109.73 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
-+...|..++..|++++|+..|+++++.+|.++.+|..+|.++..+|++++|+..|.+++.++|+ ++.+|+.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASRE 289 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~~ 289 (398)
+|++++|+..|+++++
T Consensus 84 ~~~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLK 99 (117)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999999954
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=2.3e-14 Score=125.10 Aligned_cols=191 Identities=12% Similarity=-0.017 Sum_probs=163.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL--------------GDYTRAVSLLQDLAKE-KPSDPDVFRLLGEVKY 237 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~ 237 (398)
..+++...|++++...|.++.+|...+..+... +..++|...|+++++. .|.+...|..++.++.
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356678899999999999999999988765433 3458899999999975 7888899999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccC
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKV 317 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (398)
..|+++.|...|++++...|.....+|..++......|+++.|..+|.++++. ..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~-------------------------~~ 165 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-------------------------AR 165 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------------------------TT
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------------------------CC
Confidence 99999999999999999999734568999999999999999999999998552 22
Q ss_pred CCchHHHHHHHHH-HhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 318 DPIQVELLLGKAY-SDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 318 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.....+...+... ...|+.+.|..+|++++...|+++..|..++..+...|+++.|..+|++++...|.++
T Consensus 166 ~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 2234555566654 4568999999999999999999999999999999999999999999999999877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.2e-14 Score=113.73 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.+...|..++..|+|++|+.+|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+ +..+|..+|.++..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 35566788888888888888888888888888888888888888888888888888888888888 88888888888888
Q ss_pred cCCchHHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASRE 289 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~~ 289 (398)
+|++++|+..+++++.
T Consensus 91 ~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 91 LGKFRAALRDYETVVK 106 (159)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888777777755
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.61 E-value=3.9e-15 Score=108.96 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+|..+|.+|..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHH
Q 015907 239 LKDYEGSAAAYRVST 253 (398)
Q Consensus 239 ~g~~~~A~~~~~~al 253 (398)
.|++++|++++++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.5e-15 Score=141.52 Aligned_cols=224 Identities=10% Similarity=-0.058 Sum_probs=144.7
Q ss_pred HHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHH
Q 015907 102 EEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTR 177 (398)
Q Consensus 102 eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 177 (398)
+|++.|++++...|+..+++.. +|.+ .| +.+| |++++..+ |.....+...+ ......+..+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~-la~~~~~~~~l~ea---ye~~i~~d---------p~~a~~~~~e~--~Lw~~~y~~~ 68 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLG-PAEVWTSRQALQDL---YQKMLVTD---------LEYALDKKVEQ--DLWNHAFKNQ 68 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSC-SSSSHHHHHHHHHH---HHHHHHHC---------HHHHHHHTHHH--HHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhh-HHHHHHHHchHHHH---HHHHHHcC---------hhhHHHHhHHH--HHHHHHHHHH
Confidence 6888999999999998888866 7777 44 5544 88888877 76655543222 2223346677
Q ss_pred HHHHHHHHhcC--CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 178 LKKYEETLSIS--PKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 178 ~~~~~~~l~~~--p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
+..+++..+.. ++... ....++.++...+.|+.|+..+.+++.++|.+...+..+|.++...|++++|+..+.+++.
T Consensus 69 ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHH
T ss_pred HHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 88888877654 22222 2333456666778888999988888888898888999999999999999999999999888
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG 334 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 334 (398)
.+| ..++..+|.++...|++++|+.+|.+++.. .++...++..+|.++...|
T Consensus 149 ~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------------------------~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 149 YIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQL-------------------------VPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp HHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CTTBSHHHHHHHHHHHHTT
T ss_pred CCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------------CCCchHHHHHHHHHHHHcC
Confidence 765 357888999999999999999999998763 2333467777999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 335 RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 335 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
++.+|+.+|.+++...|..+.++.+|+.++.+..
T Consensus 201 ~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 201 DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988887554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.4e-14 Score=114.51 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
..+...|..++..|+|++|+..|++++...|.. ..++.++|.+|..+|++++|+..++++++++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 456788999999999999999999999987754 24677899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
+++.+++.+|.++..+|++++|+..|+++++++|+ ++.+...++.+....+...+..
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999999987766555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.3e-14 Score=118.20 Aligned_cols=103 Identities=14% Similarity=0.050 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
+...+...|..++..|+|++|+..|+++++++|.++.+|.++|.+|...|++++|+.+|++++.++|+ ++.+|+.+|.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCC
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
|..+|++++|+..|++++.+.+..
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999998876644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.58 E-value=1.4e-14 Score=105.94 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+ +..+|..+|.+|..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCchHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASR 288 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~ 288 (398)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.5e-15 Score=109.03 Aligned_cols=110 Identities=17% Similarity=0.068 Sum_probs=98.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG---DYTRAVSLLQDLAKEKPSD--PDVFRLLGEVKY 237 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 237 (398)
.++..+...+++++|.+.|++++..+|+++.+++++|.++...+ ++++|+..|++++..+|.+ ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999998744 5567999999999988765 458999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.+|++++|+.+|+++++++|+ +..+...++.+..+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~-~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQ-NNQAKELERLIDKA 118 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 999999999999999999999 99998888776644
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.56 E-value=5.3e-14 Score=109.09 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS----------------TALEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
..+...|..++..|+|.+|+..|.+++...|... .++.++|.+|..+|++++|+..++++++++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 4567789999999999999999999998765431 367789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 223 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
|.+..+|+.+|.++..+|++++|+..|+++++++|+ +..+...+..+....
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKL 148 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999998888776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.56 E-value=1e-14 Score=111.91 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=97.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL----------GDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+..+.+.+.|++|+..|+++++++|+++.+++.+|.++... +.+++|+..|+++++++|+++.+|+++|.
T Consensus 4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 83 (145)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence 34567889999999999999999999999999999999854 55689999999999999999999999999
Q ss_pred HHHHccC-----------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 235 VKYELKD-----------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 235 ~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
+|..+|+ +++|+++|++++.++|+ +..++..|+.+...
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHHHHH
Confidence 9988764 79999999999999999 99999988887643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.55 E-value=1.3e-13 Score=108.68 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
+..+...|..++..|+|.+|+..|.+++...|.. ..++.++|.||..+|++++|+..++++++++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 3467789999999999999999999999764432 2357789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHHH
Q 015907 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE-AVQFLLASRE 289 (398)
Q Consensus 223 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~ 289 (398)
|.+..+++.+|.++..+|++++|+..|++++.++|+ +..++..++.+....+.+.+ ....|.++.+
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 99999999999877665543 4444444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.55 E-value=3.5e-14 Score=112.23 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSI----------------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
+...|..++..|+|++|+..|.+++.. .|....++.++|.++..+|++++|+..+.++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 456788899999999999999999864 3455668899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~ 279 (398)
++.+|+.+|.++..+|++++|+..|+++++++|+ +..+...++.+........+
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999888766554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.54 E-value=3e-12 Score=108.78 Aligned_cols=228 Identities=11% Similarity=0.110 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
+|.+++.+|..+...+++++|+.+|+++.+. .+..+++.||.+|.. ..++..|..+++.+.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 4678999999999999999999999999875 588999999999998 779999999999987654 67788888
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCC---Cchhh
Q 015907 233 GEVKYE----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKS---DDLSV 301 (398)
Q Consensus 233 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~---~~~~~ 301 (398)
|.++.. ..+.+.|...++++.... ...+...++..+.. ......+...+.+.......... +....
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhc
Confidence 888765 467899999999988765 34555566655554 33344555555443221110000 00000
Q ss_pred hcccccc------ccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----c
Q 015907 302 KDGRSGD------KKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----N 367 (398)
Q Consensus 302 ~~~~~~~------~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 367 (398)
....... ..+..+.......+.+.+|.+|.. ..++++|+.+|+++.+. +++.++++||.+|.. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSS
T ss_pred cCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCc
Confidence 0000000 111222233345677779999887 67899999999999886 578999999999986 4
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 368 GKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.++++|+.+|+++....+......+.
T Consensus 232 ~n~~~A~~~~~kAa~~g~~~A~~~l~ 257 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAKGACDILK 257 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 48999999999999988766554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.6e-14 Score=104.98 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-------DVFR 230 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 230 (398)
+..+..+|..++..|+|++|+.+|.++++++|+++.++.++|.+|..+|+|++|+..++++++++|.+. .++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345778999999999999999999999999999999999999999999999999999999999988664 4677
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.+|.++..++++++|+.+|++++..+|+ ++....+
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l 118 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKC 118 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHH
Confidence 7888888999999999999999998875 4544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2e-13 Score=107.75 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++.++|.+|..+|++++|+.++++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l 136 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 136 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4556999999999999999999999999999999999999999999999999999999999999999887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.51 E-value=3.3e-13 Score=104.49 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.+.++|.+|..+|++++|+..++++++++|.+..+|+.+|.++..+|++++|+..|+++++++|++..++..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4556999999999999999999999999999999999999999999999999999999999999999887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4e-13 Score=100.58 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++.++|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~ 70 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc
Confidence 34556666777777777777777777777766667777777777777777777777777666665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.47 E-value=8.6e-13 Score=103.90 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
..+...|..++..|+|.+|+..|.+++..++........... ........++.++|.+|..+|++++|+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~----------~~~~~~~~~~~Nla~~~~~l~~~~~Ai~ 85 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESK----------ASESFLLAAFLNLAMCYLKLREYTKAVE 85 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH----------HHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhh----------hcchhHHHHHHhHHHHHHHhhhcccchh
Confidence 345566666667777777777776666655443220000000 0000001345569999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+++++.++|++..+++.+|.+|..+|++++|+..|++++.++|+++.++..+.
T Consensus 86 ~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~ 139 (168)
T d1kt1a1 86 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIF 139 (168)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.2e-13 Score=98.56 Aligned_cols=108 Identities=8% Similarity=-0.008 Sum_probs=83.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK---PDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
.++..+...+++++|++.|++++.++|+ ++.+++++|.++...++ +++|+..|++++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l------------------- 63 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL------------------- 63 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------------------
Confidence 4666777888888888888888888888 88888888888876544 446888887763
Q ss_pred cccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 308 DKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 308 ~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
..+|. ++++++|.+|...|++++|+.+|+++++++|++..+...++.+..+
T Consensus 64 --------~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 64 --------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp --------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------hccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 33332 3566688888888888888888888888899888888877776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.42 E-value=9.9e-13 Score=100.57 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=92.4
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHhcCCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK----------NVLQTRLKKYEETLSISPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~~~~ 197 (398)
.+ +++|+..|++++.++ |.++.+++.+|.++... +.+++|+..|+++++++|+++.+|+.
T Consensus 10 ~~~fe~A~~~~e~al~~~---------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~ 80 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSN---------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 80 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC---------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence 45 788999999999999 99999999999888754 55689999999999999999999999
Q ss_pred HHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 198 AAVTLAELGD-----------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 198 la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
+|.+|..+|+ +++|+.+|+++++++|++..++..|+.+....+.+.+
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999988764 7999999999999999999999988887655444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.41 E-value=1e-12 Score=103.59 Aligned_cols=92 Identities=23% Similarity=0.252 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.....+.++|.++...|++++|+..|.++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...++.
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~ 153 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHH
Q 015907 235 VKYELKDYEGSA 246 (398)
Q Consensus 235 ~~~~~g~~~~A~ 246 (398)
+........++.
T Consensus 154 ~~~~l~~~~~~~ 165 (169)
T d1ihga1 154 VKQKIKAQKDKE 165 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2e-11 Score=85.69 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD-------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
..+.+|.+++..|+|.+|+.+|++++++.|.+ ..++..+|.++...|++++|+.+|+++++++|+++.++.++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34555555555555555555555555543322 34455555555555555555555555555555555555555
Q ss_pred HHH
Q 015907 233 GEV 235 (398)
Q Consensus 233 a~~ 235 (398)
+.+
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.6e-11 Score=85.15 Aligned_cols=81 Identities=9% Similarity=0.013 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
++-++.+|.+++..|+|++|+.+|++++++.|.+ ..++..+|.++...|++++|+.+|+++++++|+ ++.++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHH
Confidence 5667899999999999999999999999986543 678999999999999999999999999999999 99999
Q ss_pred HHHHHHHHH
Q 015907 265 RGLTNALLA 273 (398)
Q Consensus 265 ~~la~~~~~ 273 (398)
.+++.+...
T Consensus 84 ~Nl~~~~~~ 92 (95)
T d1tjca_ 84 GNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.21 E-value=3.4e-09 Score=89.38 Aligned_cols=213 Identities=15% Similarity=0.065 Sum_probs=161.0
Q ss_pred HHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh--h--c----HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 92 RRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--I--G----VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 92 ~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~--g----~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
.....++++.+|++.|+++.. .++.++... +|.+ . | ...|..++..+.. +.++.+...
T Consensus 10 ~~~~~~~d~~~A~~~~~kAa~--~g~~~A~~~-Lg~~y~~G~~~~~d~~~a~~~~~~a~~-----------~~~~~a~~~ 75 (265)
T d1ouva_ 10 AKSYKEKDFTQAKKYFEKACD--LKENSGCFN-LGVLYYQGQGVEKNLKKAASFYAKACD-----------LNYSNGCHL 75 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--TTCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHH-----------TTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--CCCHHHHHH-HHHHHHcCCCcchhHHHHHHhhccccc-----------ccccchhhc
Confidence 334456788889999988765 368888766 7777 2 1 7778888888764 445667777
Q ss_pred HHHHHHH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 164 KELSEEE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 164 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
+|..+.. ..+.+.|...++++.... ...+...++..+.. ......|...+.+... +.+...+..+|.+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence 7777664 467888888998888754 45666667766665 4556777777777655 4567888999999
Q ss_pred HHH----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 236 KYE----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 236 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
+.. ..+...+..+++.+.+. . ++.+++.+|.++.. ..++++|+.+|.++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~--g-~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~------------------ 210 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDL--K-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE------------------ 210 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH------------------
T ss_pred hccCCCcccccccchhhhhccccc--c-ccccccchhhhcccCcccccchhhhhhhHhhhhc------------------
Confidence 986 45778888888888764 3 78999999999987 6789999999999844
Q ss_pred cccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCC
Q 015907 308 DKKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 352 (398)
.....+.+.||.+|.. ..++++|+.+|+++....+.
T Consensus 211 ---------~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 211 ---------LENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp ---------TTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ---------ccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 4456788889999986 45899999999999886543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.19 E-value=2.1e-11 Score=94.44 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=61.4
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDS------------TALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------- 224 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 224 (398)
.|..++..|+|++|+..|++++++.|+.+ .+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 15 ~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 15 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence 36677777888888888888887766542 35666777777777777777777776665321
Q ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 015907 225 ----DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 225 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 257 (398)
...+++++|.+|..+|++++|+..|++++++.|
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 122456666666666666666666666666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.15 E-value=1.3e-10 Score=89.80 Aligned_cols=98 Identities=12% Similarity=0.010 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSD------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI----- 259 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 259 (398)
..|..++..|+|++|+..|++++++.|.. ..+|.++|.+|..+|++++|+..+++++.+.|..
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 34778889999999999999999987754 3578899999999999999999999999874320
Q ss_pred -----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 260 -----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 260 -----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
...+++++|.+|..+|++++|+..|++++++.+..
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 23368899999999999999999999999877654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.12 E-value=6.3e-11 Score=99.59 Aligned_cols=130 Identities=16% Similarity=0.083 Sum_probs=111.7
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 245 (398)
.-.+..|++++|+..|+++++.+|+++.++..++.+|...|++++|+..|+++++++|+...++..++.++...+..+++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999998877777766
Q ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC
Q 015907 246 AAAYRVSTMV-SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 246 ~~~~~~al~~-~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 296 (398)
...+...... .|. ....+...+.++...|++++|...+.++.+..+..+.
T Consensus 84 ~~~~~~~~~~~~p~-~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 84 AQGAATAKVLGENE-ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp TTSCCCEECCCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhhhhcccCch-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 5554443333 344 5667778899999999999999999999988877654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.06 E-value=1.6e-10 Score=91.13 Aligned_cols=123 Identities=7% Similarity=-0.069 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....+...|......|++++|+..|.+++.+.+......... +.+ .......+.+....++..++.++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999999987664321111 111 11122233344567889999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
...|++++|+.++++++..+|. +..+|..++.++...|++.+|+..|+++...+.
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~ 132 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 132 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999977654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.06 E-value=2.4e-10 Score=95.91 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=99.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH
Q 015907 200 VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~ 279 (398)
.-.+..|++++|+..++++++.+|++..++..++.++...|++++|+..|+++++++|+ +..++..++.++...+..++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHH
Confidence 34567899999999999999999999999999999999999999999999999999999 89999999888866555444
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchH--HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHH
Q 015907 280 AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV--ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRG 356 (398)
Q Consensus 280 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 356 (398)
+...+... .....|... ....+..+...|++++|...++++.+..|..+..
T Consensus 83 a~~~~~~~--------------------------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATA--------------------------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCE--------------------------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhh--------------------------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33221100 011223322 2336777788888888888888888888776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=1.9e-08 Score=78.96 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
.++..++.++...|++++|+.++++++..+|.+..+|..++.+|...|++.+|+..|+++.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999998873
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=5.7e-07 Score=64.12 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 158 EAGVVNKELSEEEK---NVLQTRLKKYEETLSISPKDS-TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 158 ~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
..+.+..|+++... .+.++++.+|+.++..+|.+. ++++.+|..|+++|+|++|..+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 45666677666643 456677777777777777553 67777777777777777777777777777777776655443
Q ss_pred H
Q 015907 234 E 234 (398)
Q Consensus 234 ~ 234 (398)
.
T Consensus 115 ~ 115 (124)
T d2pqrb1 115 M 115 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.46 E-value=2.6e-06 Score=62.92 Aligned_cols=109 Identities=14% Similarity=0.108 Sum_probs=92.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAA 247 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 247 (398)
.++++|+.+|+++.+.. ++.+.+.++. ....++++|+.+++++.+. .++.+.+.||.+|.. ..++.+|++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 58899999999998874 5667777765 3457899999999999875 578999999999986 567999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRE 289 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~ 289 (398)
+|+++.+.. ++.+.+.||.+|.. ..++.+|+.+|+++.+
T Consensus 81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 999998864 78899999999987 5689999999999855
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=5.5e-06 Score=58.88 Aligned_cols=79 Identities=19% Similarity=0.073 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 191 DSTALEGAAVTLAELG---DYTRAVSLLQDLAKEKPSDP-DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
...+.+.+|.++.... +.++|+.+++.+++.+|.+. ++++.||..|..+|+|++|..+++++++++|+ +..+...
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~-n~qA~~L 112 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQVGAL 112 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC-cHHHHHH
Confidence 3678999999998764 45699999999999998764 79999999999999999999999999999999 8887655
Q ss_pred HHHH
Q 015907 267 LTNA 270 (398)
Q Consensus 267 la~~ 270 (398)
.-.+
T Consensus 113 ~~~I 116 (124)
T d2pqrb1 113 KSMV 116 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=3.9e-06 Score=61.95 Aligned_cols=74 Identities=11% Similarity=-0.046 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQ 282 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~ 282 (398)
|+++|+.+|+++.+.. ++.+.+.++. ....++++|+.+|+++.+.+ ++.+.+.||.+|.. ..++++|+.
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHH
Confidence 4556666666665543 2334444432 22345555555555555432 45555555555543 233344444
Q ss_pred HHHHH
Q 015907 283 FLLAS 287 (398)
Q Consensus 283 ~~~~a 287 (398)
+|+++
T Consensus 81 ~~~~a 85 (133)
T d1klxa_ 81 YYSKA 85 (133)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 44443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.20 E-value=0.048 Score=45.87 Aligned_cols=215 Identities=11% Similarity=-0.008 Sum_probs=126.8
Q ss_pred CCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC
Q 015907 115 PIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD 191 (398)
Q Consensus 115 p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 191 (398)
|++.+...+ ...| .| ++.|..+|...- + +-.+..++...++++.|...+.+. ++
T Consensus 12 ~n~~d~~~i-~~~c~~~~lye~A~~lY~~~~-------------d----~~rl~~~~v~l~~~~~avd~~~k~-----~~ 68 (336)
T d1b89a_ 12 PNNAHIQQV-GDRCYDEKMYDAAKLLYNNVS-------------N----FGRLASTLVHLGEYQAAVDGARKA-----NS 68 (336)
T ss_dssp C-----------------CTTTHHHHHHHTT-------------C----HHHHHHHHHTTTCHHHHHHHHHHH-----TC
T ss_pred CCcCCHHHH-HHHHHHCCCHHHHHHHHHhCC-------------C----HHHHHHHHHhhccHHHHHHHHHHc-----CC
Confidence 455555444 3334 66 788888887542 2 345567778899999999988876 57
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
+..|..+...+....+..-|.-. ... .-.+++-...+...|...|.+++.+.+++.++...+. +...+..++.+|
T Consensus 69 ~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~-~~~~~~~L~~ly 143 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILY 143 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCcc-chHHHHHHHHHH
Confidence 88999999988888777654221 111 1234555566778888999999999999999988777 888888898877
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---------hHHHHHHHHHHhCCChHHHHHH
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI---------QVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~ 342 (398)
.+.+ .++-++.+... .. ..++. ..|--+..+|.+.|++++|+..
T Consensus 144 ak~~-~~kl~e~l~~~----s~----------------------~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~ 196 (336)
T d1b89a_ 144 SKFK-PQKMREHLELF----WS----------------------RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 196 (336)
T ss_dssp HTTC-HHHHHHHHHHH----ST----------------------TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhC-hHHHHHHHHhc----cc----------------------cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence 6643 44444444321 10 11111 1222367777888888888766
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 343 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+-. +|.+..-....-.++.+.++.+.......-.++..|+..
T Consensus 197 ~i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i 238 (336)
T d1b89a_ 197 MMN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLL 238 (336)
T ss_dssp HHH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGH
T ss_pred HHH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHH
Confidence 533 333333333344445555555544444444444455443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.43 Score=41.71 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=44.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++......+++..+...+..+-..........+.+|..+...|+.++|..+|..+.. .++
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~ 350 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRG 350 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCS
T ss_pred HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCC
Confidence 333455668999888888765432233467889999999999999999999998875 343
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.48 Score=41.38 Aligned_cols=209 Identities=10% Similarity=-0.047 Sum_probs=135.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV----TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..+..-....+.+.|...+.......+.....+..... .+...+..+.+...+........+.......++. ...
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~ 297 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALG 297 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHH
Confidence 34444445578888998888877766665554433333 3334567788888887776655544433334444 556
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC--Cchh-hhccccccccccccc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--DDLS-VKDGRSGDKKETEPQ 315 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 315 (398)
.+++..+...+..+-. .|.......+.+|..+...|+.++|..+|..+... +. +.+. ..+|..-.... ...
T Consensus 298 ~~~~~~~~~~~~~l~~-~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~----~~fYG~LAa~~Lg~~~~~~~-~~~ 371 (450)
T d1qsaa1 298 TGDRRGLNTWLARLPM-EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----RGFYPMVAAQRIGEEYELKI-DKA 371 (450)
T ss_dssp HTCHHHHHHHHHHSCT-TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSHHHHHHHHHTTCCCCCCC-CCC
T ss_pred cCChHHHHHHHHhcCc-ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC----CChHHHHHHHHcCCCCCCCc-CCC
Confidence 7899999888876533 33325778899999999999999999999776431 11 1110 01111100000 001
Q ss_pred cCCCc-----hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 316 KVDPI-----QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 316 ~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
...+. ...+..+..+...|+...|...+..++.. .+..-...++.+..+.|.++.||....++
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 11111 22334778889999999999999888753 35677888999999999999999887766
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.12 E-value=0.4 Score=39.96 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.-..|..+...|.|+.|..+|...- -+..+..++...++++.|.+.+.+. +.+..|..+...+....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCc
Confidence 4457888889999999999997531 2345567788999999999998876 56789999998888877
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
+..-+. ++......+++-...+...|...|.+++.+.+++.+.. ......
T Consensus 84 e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~-------------------------~~~~~~ 133 (336)
T d1b89a_ 84 EFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG-------------------------LERAHM 133 (336)
T ss_dssp CHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------------------------STTCCH
T ss_pred HHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-------------------------CCccch
Confidence 765442 22222112566667788889999999999999977632 111112
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH-hCCC-------ChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLIS-SYPN-------DFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
.....++.+|.+.+ .++-++.+...-. .++. ....|-.+..+|.+.|++++|+..+
T Consensus 134 ~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 134 GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence 34445777776653 3444444433211 1110 1224567888888999999887654
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| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.23 E-value=3.4 Score=32.05 Aligned_cols=176 Identities=11% Similarity=-0.024 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--KPS-DPDVFRLLGEVKYE-LKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
|..-+-+..+|.+..+.++|++.+.+.+++++. +|. +.+=...+..+|-. .|....+...+.............-.
T Consensus 1 ~~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~ 80 (236)
T d1o9da_ 1 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEH 80 (236)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHH
Confidence 444556778899999999999999999999987 443 44555556655543 45555666666544432211011111
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHH--HHHHHHh-----CCC-
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELL--LGKAYSD-----GGR- 335 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--la~~~~~-----~g~- 335 (398)
..+..-|... =-++=......++.++... +.. ...++. .+.++ .|..|.- .|+
T Consensus 81 ~~~i~~yk~k-ie~EL~~~C~~ii~lid~~----------------Lip-~~~~~eskvFy~KmkgDyyRYlaE~~~~~e 142 (236)
T d1o9da_ 81 VNSIREYRSK-IENELSKICDGILKLLDAK----------------LIP-SAASGDSKVFYLKMKGDYHRYLAEFKTGAE 142 (236)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHT----------------HHH-HCCSHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHh----------------ccc-cCCCchhHHHHHHhhchHHHHHHHhcCchh
Confidence 2222222110 0111112222222222111 000 011111 23332 5665522 232
Q ss_pred ----hHHHHHHHHHHHH-----hCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 015907 336 ----VSDAVAVYDRLIS-----SYPNDFR---GYLAKGIILK-ENGKVGDAERMFIQARF 382 (398)
Q Consensus 336 ----~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 382 (398)
.+.|...|+.|++ +.|.+|- ...+.+..|+ ..|+.++|+...++++.
T Consensus 143 ~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd 202 (236)
T d1o9da_ 143 RKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888875 4566653 4455565555 45999999988888775
|