Citrus Sinensis ID: 016049

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MQTVKLAAIPAAFSSSCFMFRPVTKTLGLISRRNHSQKPPFRLLARAFSAPALQTIDTTDNKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAEL
ccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHcccEEccccccccccccccccccccccccccEEEccccEEEEcccccccccccccccccccccccHHccccccHHHHHcccccccccHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEccccc
ccEEEEEEEEccccccccccccccHHHHHHHcccccccccccHHHHHHcHHHHcccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcEEEEEEccccccccccccHHHHHHHcccccHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHHcccEEEcccEEEcccHcccccccccccHHHccEEccccEEEccccHHHHHHcccccEEEHHHccEEEEEEEEEEccccccccccccccccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEccc
mqtvklaaipaafssscfmfrpvtktlglisrrnhsqkppfRLLARafsapalqtidttdnkggvavkpqwkAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKmkgklepsERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEaqcipnmthpdvpvggedcsiirktvgnpsvfnfpvkdhfqlgkaldifdfdaaaevsgskfyylKNEAVMLEMGLINWTLSEVIkrgftplttpeiVRSSVVekcgfqprgantqvysiegadqcligtaeipvggihmdSILSESLLPLKYAAFSHCfrteagaagtatrglyrvhqfsklemfvfcqpeesdsyHEELIRIEEDLYSSLGLHFKLLLFLAEL
mqtvklaaipaafssscfmfrPVTKTLGLISRRNHSQKPPFRLLARAFSAPALQTidttdnkggvavkpqWKAAIDFKWIRDNKEAVsanirnrnsnaNLELVLELYEKMLNVQKEVDRLREERNAvankmkgklepserqKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGftplttpeivrssvvekcgfqprgantqvYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAEL
MQTVKLAAIPAAFSSSCFMFRPVTKTLGLISRRNHSQKPPFRLLARAFSAPALQTIDTTDNKGGVAVKPQWKAAIDFKWIRDNKEAVsanirnrnsnanLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFrteagaagtatrgLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDlysslglhfklllflael
*****LAAIPAAFSSSCFMFRPVTKTLGLISRR******PFRLLARAFSAPALQTIDTTDNKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQ**************************************GLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLA**
****K**AIPAAFSSSCFMFRPVTKTLGLISRRNHS*KPP*****************************QWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQ*******************************************EEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAEL
MQTVKLAAIPAAFSSSCFMFRPVTKTLGLISRRNHSQKPPFRLLARAFSAPALQTIDTTDNKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAEL
MQTVKLAAIPAAFSSSCFMFRPVTKTLGLISRRNHSQKPPFRLLARAFSAPALQT***T*NKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAEL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQTVKLAAIPAAFSSSCFMFRPVTKTLGLISRRNHSQKPPFRLLARAFSAPALQTIDTTDNKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELxxxxxxxxxxxxxxxxxxxxxxxxxxxxMKGKLEPSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q73KB2422 Serine--tRNA ligase OS=Tr yes no 0.797 0.748 0.485 1e-80
B2S3N6 426 Serine--tRNA ligase OS=Tr yes no 0.797 0.741 0.429 7e-76
O83653 426 Serine--tRNA ligase OS=Tr yes no 0.797 0.741 0.429 7e-76
Q1AX26424 Serine--tRNA ligase OS=Ru yes no 0.797 0.745 0.435 7e-76
B5RL50 424 Serine--tRNA ligase OS=Bo yes no 0.742 0.693 0.483 4e-75
B5RR43 424 Serine--tRNA ligase OS=Bo yes no 0.742 0.693 0.483 1e-74
Q662D8 425 Serine--tRNA ligase OS=Bo yes no 0.792 0.738 0.437 8e-74
Q0SNT6 425 Serine--tRNA ligase OS=Bo yes no 0.792 0.738 0.437 3e-73
B7J1F4 425 Serine--tRNA ligase OS=Bo yes no 0.795 0.741 0.425 2e-72
O51244 425 Serine--tRNA ligase OS=Bo yes no 0.795 0.741 0.425 2e-72
>sp|Q73KB2|SYS_TREDE Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=serS PE=3 SV=1 Back     alignment and function desciption
 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/317 (48%), Positives = 213/317 (67%), Gaps = 1/317 (0%)

Query: 75  IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
           +D+K+I++N EAV  NI+NR+ NA+ +  +ELY+K   +   +  L+++RN  +  MK K
Sbjct: 2   LDYKFIKENVEAVKQNIKNRHMNADADKAVELYDKRTALVTSLQNLQKDRNDNSQSMKQK 61

Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194
           L P ERQKL+++GK +KE +  +E +L +    L +    IPNM HP+ PVG ED   + 
Sbjct: 62  LSPEERQKLVDQGKAIKEKIAQVEAELAEAEKALHEAVSKIPNMAHPEAPVGKEDSDNLE 121

Query: 195 -KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
            K  G    F+F  KDH QLG+ LD+ DF+A  +VSG KFY+LKNEAV LE  L  + L+
Sbjct: 122 VKRCGTVPKFDFEPKDHVQLGQDLDLIDFEAGTKVSGVKFYFLKNEAVFLEQALTMYGLN 181

Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
            + K GF P  TP+I +  ++   GF PRG  + VYS+EG   CL+ TAEI +GG H D 
Sbjct: 182 ILRKHGFKPFITPDIAKEEILYGIGFNPRGEESNVYSLEGEGTCLVATAEITLGGYHSDE 241

Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
           I+ +  LPLKY   SHCFR EAGAAG  ++GLYRVHQFSKLEMFV+C PEESD+ HEEL 
Sbjct: 242 IIKKESLPLKYCGLSHCFRREAGAAGQFSKGLYRVHQFSKLEMFVYCTPEESDALHEELR 301

Query: 374 RIEEDLYSSLGLHFKLL 390
            IEE++++ LG+ F+++
Sbjct: 302 LIEEEIFNGLGIPFRVV 318
Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) (taxid: 243275)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|B2S3N6|SYS_TREPS Serine--tRNA ligase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|O83653|SYS_TREPA Serine--tRNA ligase OS=Treponema pallidum (strain Nichols) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|Q1AX26|SYS_RUBXD Serine--tRNA ligase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|B5RL50|SYS_BORDL Serine--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|B5RR43|SYS_BORRA Serine--tRNA ligase OS=Borrelia recurrentis (strain A1) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|Q662D8|SYS_BORGA Serine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|Q0SNT6|SYS_BORAP Serine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|B7J1F4|SYS_BORBZ Serine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|O51244|SYS_BORBU Serine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=serS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
118486579 523 unknown [Populus trichocarpa] 0.977 0.739 0.782 1e-180
224063277 523 predicted protein [Populus trichocarpa] 0.977 0.739 0.779 1e-180
449437300 539 PREDICTED: serine--tRNA ligase-like [Cuc 0.979 0.719 0.773 1e-172
356508070 506 PREDICTED: seryl-tRNA synthetase-like [G 0.967 0.756 0.743 1e-170
255545800 517 seryl-tRNA synthetase, putative [Ricinus 0.972 0.744 0.773 1e-169
449497050 563 PREDICTED: serine--tRNA ligase-like [Cuc 0.931 0.655 0.785 1e-168
357465105 546 Seryl-tRNA synthetase [Medicago truncatu 0.962 0.697 0.726 1e-166
42571443402 Seryl-tRNA synthetase [Arabidopsis thali 0.941 0.927 0.743 1e-163
30682484 514 Seryl-tRNA synthetase [Arabidopsis thali 0.949 0.731 0.743 1e-163
297844038 511 hypothetical protein ARALYDRAFT_471334 [ 0.974 0.755 0.735 1e-163
>gi|118486579|gb|ABK95128.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/395 (78%), Positives = 346/395 (87%), Gaps = 8/395 (2%)

Query: 1   MQTVKLAAIPAAFSSSCFMFRPVTKTLGL--ISRRNH---SQKPPFRLLARAFSAPALQT 55
           +QT+KLAAIPA   SS F+ +P++KTL L   SR N+    Q+ PF+LL RA S+ A+QT
Sbjct: 12  IQTLKLAAIPA---SSRFILKPISKTLVLNPFSRHNYVICPQRNPFKLLVRALSSTAVQT 68

Query: 56  IDTTDNKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQK 115
              T++     VKPQWKAAIDFKWIRDNK+AV+ NI+NRNSNANLELVLELYEKML VQK
Sbjct: 69  APITESLDNKVVKPQWKAAIDFKWIRDNKDAVALNIKNRNSNANLELVLELYEKMLAVQK 128

Query: 116 EVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175
           EV+RLR ERNAVANKMKGKLE SERQKLIEEGKNLKEGL TLEEDLVKLTDELQ EAQCI
Sbjct: 129 EVERLRAERNAVANKMKGKLEISERQKLIEEGKNLKEGLATLEEDLVKLTDELQLEAQCI 188

Query: 176 PNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYY 235
           PN+THP VP+GGED S +RK  G P  F FPVKDH QLGK LD+FDFDAAAEVSGSKFYY
Sbjct: 189 PNLTHPLVPIGGEDSSTVRKMAGTPRDFGFPVKDHLQLGKELDLFDFDAAAEVSGSKFYY 248

Query: 236 LKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD 295
           LKNEAVMLEM L+NWTLSEV+K+GFTPLTTPE+VRSSVVEKCGFQPRG NTQVYSIEG+D
Sbjct: 249 LKNEAVMLEMALVNWTLSEVMKKGFTPLTTPELVRSSVVEKCGFQPRGDNTQVYSIEGSD 308

Query: 296 QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLE 355
           QCLIGTAEIPVGGIHMD+IL+E+ LPLKY A+SHCFRTEAGAAGTATRGLYRVHQF+K+E
Sbjct: 309 QCLIGTAEIPVGGIHMDTILAETQLPLKYVAYSHCFRTEAGAAGTATRGLYRVHQFTKVE 368

Query: 356 MFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLL 390
           MFV C+PEESDSYHEELI+IEEDL+S+LGLH+K L
Sbjct: 369 MFVLCRPEESDSYHEELIKIEEDLFSALGLHYKTL 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063277|ref|XP_002301073.1| predicted protein [Populus trichocarpa] gi|222842799|gb|EEE80346.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437300|ref|XP_004136430.1| PREDICTED: serine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356508070|ref|XP_003522784.1| PREDICTED: seryl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|255545800|ref|XP_002513960.1| seryl-tRNA synthetase, putative [Ricinus communis] gi|223547046|gb|EEF48543.1| seryl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449497050|ref|XP_004160298.1| PREDICTED: serine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357465105|ref|XP_003602834.1| Seryl-tRNA synthetase [Medicago truncatula] gi|355491882|gb|AES73085.1| Seryl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|42571443|ref|NP_973812.1| Seryl-tRNA synthetase [Arabidopsis thaliana] gi|332190685|gb|AEE28806.1| Seryl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30682484|ref|NP_849647.1| Seryl-tRNA synthetase [Arabidopsis thaliana] gi|20268723|gb|AAM14065.1| putative seryl-tRNA synthetase [Arabidopsis thaliana] gi|21689901|gb|AAM67511.1| putative seryl-tRNA synthetase [Arabidopsis thaliana] gi|332190684|gb|AEE28805.1| Seryl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844038|ref|XP_002889900.1| hypothetical protein ARALYDRAFT_471334 [Arabidopsis lyrata subsp. lyrata] gi|297335742|gb|EFH66159.1| hypothetical protein ARALYDRAFT_471334 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2008865 514 SRS "Seryl-tRNA synthetase" [A 0.931 0.717 0.694 2.6e-134
DICTYBASE|DDB_G0267604 525 mserS "serine-tRNA ligase, mit 0.767 0.579 0.367 9.2e-52
UNIPROTKB|P67561419 serS "Serine--tRNA ligase" [My 0.744 0.704 0.352 5.2e-42
RGD|1309456 518 Sars2 "seryl-tRNA synthetase 2 0.696 0.532 0.319 5.3e-40
UNIPROTKB|Q9NP81 518 SARS2 "Serine--tRNA ligase, mi 0.696 0.532 0.326 6.8e-40
UNIPROTKB|E7EX87 518 SARS2 "Serine--tRNA ligase, mi 0.686 0.525 0.327 2.3e-39
MGI|MGI:1919234 518 Sars2 "seryl-aminoacyl-tRNA sy 0.696 0.532 0.319 4.8e-39
UNIPROTKB|F1RI32 510 FBXO17 "Uncharacterized protei 0.696 0.541 0.326 7.8e-39
UNIPROTKB|G8JKV4 459 SARS2 "Serine--tRNA ligase, mi 0.684 0.590 0.322 3e-37
UNIPROTKB|Q9N0F3 518 SARS2 "Serine--tRNA ligase, mi 0.684 0.523 0.322 3e-37
TAIR|locus:2008865 SRS "Seryl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 261/376 (69%), Positives = 294/376 (78%)

Query:     7 AAIPAAFSSSCFMFRPVTKTL--GLISRRNHSQKPPFRLLARAFSAPA-LQTIDTTDNK- 62
             AA+P  FSS  F+ +P T TL  GL SR    +  P  LL RAFSA A +Q I  T    
Sbjct:    10 AAVPVTFSSRLFL-KPFTNTLTLGLFSRHLQPRNKP--LLVRAFSASAAVQDIPATQTSD 66

Query:    63 GGVAVKPQWKAAIDFKWIRDNKEAVXXXXXXXXXXXXLELVLELYEKMLNVQKEVDRLRE 122
               VA +P WKAAIDFKWIRDNKEAV            LE VL+LYE M+N+QKEV+RLRE
Sbjct:    67 SSVAARPLWKAAIDFKWIRDNKEAVEINIRNRNSNANLEAVLQLYENMVNLQKEVERLRE 126

Query:   123 ERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182
             ERN VA KMKGKLEPSER++L+EEGKNLKE LVTLEEDLVKL DELQ  AQ IPNMTHPD
Sbjct:   127 ERNNVAKKMKGKLEPSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPD 186

Query:   183 VPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVM 242
             VPVGGED S IR+ VG+P  F+FP+KDH QLGK LD+ DFD+AAEVSGSKF+YLKNEAV+
Sbjct:   187 VPVGGEDSSAIRQEVGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVL 246

Query:   243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTA 302
             LEM L+NWTLS+V+K+G+TPLTTPEIVRSS+VEKCGFQPRG NTQVYSI+G DQCLIGTA
Sbjct:   247 LEMALLNWTLSQVMKKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSIDGTDQCLIGTA 306

Query:   303 EIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP 362
             EIPVGGIHMDSIL ES LPLKY AFSHCF             LYRVHQFSK EMFV CQP
Sbjct:   307 EIPVGGIHMDSILLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQP 366

Query:   363 EESDSYHEELIRIEED 378
             E+S+S+H+ELI+IEED
Sbjct:   367 EDSESFHQELIQIEED 382
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004828 "serine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA;ISS
GO:0043039 "tRNA aminoacylation" evidence=TAS
GO:0005739 "mitochondrion" evidence=IDA
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA;TAS
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009069 "serine family amino acid metabolic process" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
DICTYBASE|DDB_G0267604 mserS "serine-tRNA ligase, mitochondrial" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P67561 serS "Serine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
RGD|1309456 Sars2 "seryl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP81 SARS2 "Serine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EX87 SARS2 "Serine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919234 Sars2 "seryl-aminoacyl-tRNA synthetase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RI32 FBXO17 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKV4 SARS2 "Serine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N0F3 SARS2 "Serine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.110.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_II0918
SubName- Full=Putative uncharacterized protein; (523 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•  •  • 0.812
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•  •  • 0.787
fgenesh4_pm.C_LG_IX000007
hypothetical protein (574 aa)
   •  • 0.754
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
      • 0.708
fgenesh4_pm.C_LG_XVIII000153
cysteine-tRNA ligase (EC-6.1.1.16) (493 aa)
  •   • 0.695
eugene3.114390001
Predicted protein (351 aa)
      • 0.667
estExt_fgenesh4_pm.C_LG_X0474
hypothetical protein (533 aa)
  •   • 0.654
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.645
gw1.X.2264.1
hypothetical protein (594 aa)
   •  • 0.636
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
      • 0.632

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
PLN02320 502 PLN02320, PLN02320, seryl-tRNA synthetase 0.0
PRK05431425 PRK05431, PRK05431, seryl-tRNA synthetase; Provisi 1e-119
COG0172 429 COG0172, SerS, Seryl-tRNA synthetase [Translation, 1e-104
cd00770297 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) 1e-96
TIGR00414418 TIGR00414, serS, seryl-tRNA synthetase 3e-87
PLN02678 448 PLN02678, PLN02678, seryl-tRNA synthetase 9e-59
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 5e-42
pfam02403108 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-t 2e-24
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 5e-15
TIGR00418 563 TIGR00418, thrS, threonyl-tRNA synthetase 2e-12
cd00771 298 cd00771, ThrRS_core, Threonyl-tRNA synthetase (Thr 5e-09
COG0441 589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 8e-09
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 2e-08
PRK12305 575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 4e-04
pfam09789319 pfam09789, DUF2353, Uncharacterized coiled-coil pr 0.002
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase Back     alignment and domain information 
 Score =  695 bits (1794), Expect = 0.0
 Identities = 302/382 (79%), Positives = 330/382 (86%), Gaps = 6/382 (1%)

Query: 15  SSCFMF-RPVTKT--LGLISR--RNHSQKPPFRLLARAFSA-PALQTIDTTDNKGGVAVK 68
           SS F+F +P T T  LG  SR   +  Q+P   LL RAFSA  A+Q I  T        +
Sbjct: 1   SSRFIFLKPFTNTLTLGPFSRLTVSLLQRPHKPLLVRAFSASAAVQDIPATQKSDSSVAR 60

Query: 69  PQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVA 128
           PQWKAAIDFKWIRDNKEAV+ NIRNRNSNANLELVLELYE ML +QKEV+RLR ERNAVA
Sbjct: 61  PQWKAAIDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVA 120

Query: 129 NKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE 188
           NKMKGKLEPSERQ L+EEGKNLKEGLVTLEEDLVKLTDELQ EAQ IPNMTHPDVPVGGE
Sbjct: 121 NKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGE 180

Query: 189 DCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLI 248
           D S +RK VG+P  F+FP+KDH QLGK LD+FDFDAAAEVSGSKFYYLKNEAV+LEM L+
Sbjct: 181 DSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALV 240

Query: 249 NWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGG 308
           NWTLSEV+K+GFTPLTTPEIVRSSVVEKCGFQPRG NTQVYSI+G+DQCLIGTAEIPVGG
Sbjct: 241 NWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVGG 300

Query: 309 IHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSY 368
           IHMDSIL ES LPLKY AFSHCFRTEAGAAG ATRGLYRVHQFSK+EMFV C+PEES+S+
Sbjct: 301 IHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESF 360

Query: 369 HEELIRIEEDLYSSLGLHFKLL 390
           HEELI+IEEDL++SLGLHFK L
Sbjct: 361 HEELIQIEEDLFTSLGLHFKTL 382

Length = 502
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
PLN02320 502 seryl-tRNA synthetase 100.0
COG0172 429 SerS Seryl-tRNA synthetase [Translation, ribosomal 100.0
PLN02678 448 seryl-tRNA synthetase 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
KOG2509 455 consensus Seryl-tRNA synthetase [Translation, ribo 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
TIGR00415 520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
PRK00960 517 seryl-tRNA synthetase; Provisional 100.0
PLN02837 614 threonine-tRNA ligase 100.0
cd00771 298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
PLN02908 686 threonyl-tRNA synthetase 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
PRK03991 613 threonyl-tRNA synthetase; Validated 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 99.98
PRK12444 639 threonyl-tRNA synthetase; Reviewed 99.98
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 99.98
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.97
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.97
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.96
PRK09194 565 prolyl-tRNA synthetase; Provisional 99.95
PRK08661 477 prolyl-tRNA synthetase; Provisional 99.95
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 99.95
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 99.94
PRK12325 439 prolyl-tRNA synthetase; Provisional 99.94
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.93
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.93
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.91
KOG1637 560 consensus Threonyl-tRNA synthetase [Translation, r 99.9
PRK04173 456 glycyl-tRNA synthetase; Provisional 99.89
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.87
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 99.85
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.78
CHL00201 430 syh histidine-tRNA synthetase; Provisional 99.74
KOG2324 457 consensus Prolyl-tRNA synthetase [Translation, rib 99.74
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 99.72
cd00773 261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.66
PLN02530 487 histidine-tRNA ligase 99.63
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 99.61
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 99.59
PRK12420 423 histidyl-tRNA synthetase; Provisional 99.56
TIGR00443 314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 99.52
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 99.5
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 99.48
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.46
PRK12293 281 hisZ ATP phosphoribosyltransferase regulatory subu 99.46
PRK14894 539 glycyl-tRNA synthetase; Provisional 99.45
PLN02972 763 Histidyl-tRNA synthetase 99.42
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.41
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 99.41
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.32
COG0423 558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.32
PF13393 311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 99.31
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 99.29
PLN02734 684 glycyl-tRNA synthetase 99.28
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.28
COG3705 390 HisZ ATP phosphoribosyltransferase involved in his 99.11
PRK07080317 hypothetical protein; Validated 99.05
KOG1936 518 consensus Histidyl-tRNA synthetase [Translation, r 98.78
PRK12294 272 hisZ ATP phosphoribosyltransferase regulatory subu 98.69
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 98.64
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.46
cd00669 269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.27
PRK09350 306 poxB regulator PoxA; Provisional 98.17
cd00776 322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 98.04
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 97.98
KOG2298 599 consensus Glycyl-tRNA synthetase and related class 97.98
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 97.96
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.91
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 97.89
PF00152 335 tRNA-synt_2: tRNA synthetases class II (D, K and N 97.88
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.84
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.84
TIGR00458 428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 97.83
PLN02903 652 aminoacyl-tRNA ligase 97.79
PRK05159 437 aspC aspartyl-tRNA synthetase; Provisional 97.76
PRK06462 335 asparagine synthetase A; Reviewed 97.74
cd00775 329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.73
PRK03932 450 asnC asparaginyl-tRNA synthetase; Validated 97.69
cd00777 280 AspRS_core Asp tRNA synthetase (aspRS) class II co 97.68
PRK00484 491 lysS lysyl-tRNA synthetase; Reviewed 97.66
TIGR00462 304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.64
TIGR00457 453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.62
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 97.61
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 97.61
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.55
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.52
TIGR00499 496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.51
PLN02502 553 lysyl-tRNA synthetase 97.5
PTZ00385 659 lysyl-tRNA synthetase; Provisional 97.49
PRK12445 505 lysyl-tRNA synthetase; Reviewed 97.49
PTZ00417 585 lysine-tRNA ligase; Provisional 97.48
PTZ00425 586 asparagine-tRNA ligase; Provisional 97.41
PLN02850 530 aspartate-tRNA ligase 97.41
PTZ00401 550 aspartyl-tRNA synthetase; Provisional 97.4
PLN02221 572 asparaginyl-tRNA synthetase 97.35
PLN02532 633 asparagine-tRNA synthetase 97.25
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 97.21
COG0017 435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 97.18
PLN02603 565 asparaginyl-tRNA synthetase 97.14
PRK02983 1094 lysS lysyl-tRNA synthetase; Provisional 97.06
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 96.24
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 95.93
KOG0554 446 consensus Asparaginyl-tRNA synthetase (mitochondri 95.8
COG2269 322 Truncated, possibly inactive, lysyl-tRNA synthetas 95.32
COG1190 502 LysU Lysyl-tRNA synthetase (class II) [Translation 95.24
PLN02788 402 phenylalanine-tRNA synthetase 94.36
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 93.75
KOG0555 545 consensus Asparaginyl-tRNA synthetase [Translation 92.64
KOG1885 560 consensus Lysyl-tRNA synthetase (class II) [Transl 92.14
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 91.89
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 91.67
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 91.62
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 91.44
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 90.37
KOG0556 533 consensus Aspartyl-tRNA synthetase [Translation, r 90.17
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 86.59
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.75
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 85.23
PRK10884206 SH3 domain-containing protein; Provisional 84.68
COG4026290 Uncharacterized protein containing TOPRIM domain, 83.8
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 82.79
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 82.11
COG3883265 Uncharacterized protein conserved in bacteria [Fun 81.15
PF13870177 DUF4201: Domain of unknown function (DUF4201) 81.01
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 80.2
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=4.4e-92  Score=725.36  Aligned_cols=378  Identities=78%  Similarity=1.192  Sum_probs=350.7

Q ss_pred             cccccccccc--ccccccc--cCCCCCchhhhhhhccccccccccccC--CCCCccCCCccccccchHHHhcCHHHHHHH
Q 016049           17 CFMFRPVTKT--LGLISRR--NHSQKPPFRLLARAFSAPALQTIDTTD--NKGGVAVKPQWKAAIDFKWIRDNKEAVSAN   90 (396)
Q Consensus        17 ~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~mlD~~~ir~n~e~v~~~   90 (396)
                      ++++++++.+  |..++|.  +++++|..+|+.+++|++++++ +.|.  ..++...+|+||||||+++||+|+|.|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mlD~k~ir~n~~~v~~~   82 (502)
T PLN02320          4 FIFLKPFTNTLTLGPFSRLTVSLLQRPHKPLLVRAFSASAAVQ-DIPATQKSDSSVARPQWKAAIDFKWIRDNKEAVAIN   82 (502)
T ss_pred             eeeechhccccccchhhhccccccccccchHHHHHHhhhhccc-CCCccccccCcccccccccccCHHHHHhCHHHHHHH
Confidence            3355555544  4556655  3466777888888888877543 3332  356667899999999999999999999999


Q ss_pred             HHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049           91 IRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ  170 (396)
Q Consensus        91 l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~  170 (396)
                      +++|+.+.++|+|+++|++||++++++++||++||+++|+|+++..+++.+++++++++||++|+++|+++.++++++.+
T Consensus        83 l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~  162 (502)
T PLN02320         83 IRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL  162 (502)
T ss_pred             HHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999877899999999999999999999999999999999886667788999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHH
Q 016049          171 EAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW  250 (396)
Q Consensus       171 ~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~  250 (396)
                      +++.|||++||+||+|.||+++++++||+++.|+|+++||++||+++|||||++|++++|++||||+|++++|++||++|
T Consensus       163 ~~l~iPN~~h~~VP~G~de~~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f  242 (502)
T PLN02320        163 EAQSIPNMTHPDVPVGGEDSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNW  242 (502)
T ss_pred             HHHhCCCCCCccCCCCCCCCCeEEEecCCCCCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHH
Confidence            99999999999999998887788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccc
Q 016049          251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHC  330 (396)
Q Consensus       251 ~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~c  330 (396)
                      +++.+.++||++|.||+|++.++|++|||+|++.++++|+++++++||+||||+|++++|+++++++++||+||+++|+|
T Consensus       243 ~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~c  322 (502)
T PLN02320        243 TLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHC  322 (502)
T ss_pred             HHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECCCceEEeecccccccccccccccCHhhCCceeEEeccc
Confidence            99999999999999999999999999999999877799999999999999999999999999999999999999999999


Q ss_pred             cccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049          331 FRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE  395 (396)
Q Consensus       331 FR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~  395 (396)
                      ||+|+|++|++++||+|||||+|||+|+||+|++|+++|++|+++++++|+.||||||+|.|||+
T Consensus       323 FR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tg  387 (502)
T PLN02320        323 FRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATA  387 (502)
T ss_pred             cccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1wle_A 501 Crystal Structure Of Mammalian Mitochondrial Seryl- 2e-39
2dq0_A 455 Crystal Structure Of Seryl-Trna Synthetase From Pyr 6e-39
1sry_A421 Refined Crystal Structure Of The Seryl-Trna Synthet 1e-31
2dq3_A425 Crystal Structure Of Aq_298 Length = 425 2e-28
3err_A 536 Microtubule Binding Domain From Mouse Cytoplasmic D 3e-26
3vbb_A 522 Crystal Structure Of Seryl-Trna Synthetase From Hum 4e-24
3lsq_A 484 Trypanosoma Brucei Seryl-Trna Synthetase Length = 4 2e-21
3qne_A 485 Candida Albicans Seryl-Trna Synthetase Length = 485 6e-18
3qo5_A 485 Crystal Structure Of The Seryl-Trna Synthetase From 5e-17
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 153/288 (53%), Gaps = 15/288 (5%)
Query: 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKL---------EPSERQKLIEEGKNLKEG 153
           ++  ++++  +++++  L EE+ AV   ++  +         +  + Q L   G+ +++ 
Sbjct: 72  IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQ 131
Query: 154 LVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQL 213
           L  L     +L ++    A  +PN THPDVPVG E  + +   VG+   F+F  + H ++
Sbjct: 132 LTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKPAFSFQPRGHLEI 191
Query: 214 GKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSV 273
            + LDI      + VSG + YYL+    +L+ GL+N+TL+++I RGFTP+T P+++R  V
Sbjct: 192 AEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVV 251
Query: 274 VEKCGFQPRGANTQVYSIEGA---DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHC 330
            E CG  P    +Q+Y+I+ +   D  L GTAE+ + G  MD  ++   LP++    S C
Sbjct: 252 FEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTC 311
Query: 331 FXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIE 376
           +             LYRVH F+K+EMF    P  E+S    EE + ++
Sbjct: 312 Y-RAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455 Back     alignment and structure
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425 Back     alignment and structure
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536 Back     alignment and structure
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522 Back     alignment and structure
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484 Back     alignment and structure
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485 Back     alignment and structure
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1wle_A 501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 1e-129
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 1e-106
2dq0_A 455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 1e-106
3qne_A 485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 1e-95
3lss_A 484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 2e-93
3vbb_A 522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 2e-92
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 5e-89
3err_A 536 Fusion protein of microtubule binding domain from 1e-88
3mf2_A 346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 2e-33
2cja_A 522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 6e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 2e-08
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 6e-06
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 8e-06
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 2e-04
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 3e-04
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 Back     alignment and structure
 Score =  379 bits (976), Expect = e-129
 Identities = 102/334 (30%), Positives = 178/334 (53%), Gaps = 18/334 (5%)

Query: 75  IDFKWIRDNKEAVSANIRNRNSN---ANLELVLELYEKMLNVQKEVDRLREERNAVANKM 131
           +D + +    E  +  +  R       +L  ++  ++++  +++++  L EE+ AV   +
Sbjct: 41  LDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAV 100

Query: 132 KGKL---------EPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182
           +  +         +  + Q L   G+ +++ L  L     +L ++    A  +PN THPD
Sbjct: 101 RALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPD 160

Query: 183 VPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVM 242
           VPVG E  + +   VG+   F+F  + H ++ + LDI      + VSG + YYL+    +
Sbjct: 161 VPVGDESQARVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGAL 220

Query: 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA---DQCLI 299
           L+ GL+N+TL+++I RGFTP+T P+++R  V E CG  P    +Q+Y+I+ +   D  L 
Sbjct: 221 LQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLA 280

Query: 300 GTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF 359
           GTAE+ + G  MD  ++   LP++    S C+R E    G    GLYRVH F+K+EMF  
Sbjct: 281 GTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGV 339

Query: 360 CQP--EESDSYHEELIRIEEDLYSSLGLHFKLLL 391
             P  E+S    EE + ++ ++ + LGLHF++L 
Sbjct: 340 TGPGLEQSSELLEEFLSLQMEILTELGLHFRVLD 373
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421 Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455 Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485 Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484 Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522 Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425 Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
1wle_A 501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
3qne_A 485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
3lss_A 484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
3vbb_A 522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
2dq0_A 455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3err_A 536 Fusion protein of microtubule binding domain from 100.0
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
3uh0_A 460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
3mf2_A 346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 100.0
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.98
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.97
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 99.97
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 99.97
2cja_A 522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.97
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.96
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 99.96
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.95
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 99.95
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.94
2i4l_A 458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 99.93
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.92
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.87
3ikl_A 459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.86
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 99.82
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.79
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.78
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 99.78
1z7m_A 344 ATP phosphoribosyltransferase regulatory subunit; 99.77
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.77
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 99.76
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 99.73
3rac_A 373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.73
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 99.71
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.71
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.65
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 99.61
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 99.6
1usy_A 275 ATP phosphoribosyltransferase regulatory subunit; 99.41
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.36
1nnh_A 294 Asparaginyl-tRNA synthetase-related peptide; struc 98.61
1wyd_A 429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.47
1x54_A 434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.39
1eov_A 487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.35
3a74_A 493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.33
1n9w_A 422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.3
3a5y_A 345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.26
1e1o_A 504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 98.21
2xgt_A 435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 98.03
3nem_A 438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 97.98
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.89
3m4p_A 456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 97.87
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.81
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.8
4ex5_A 529 Lysine--tRNA ligase; structural genomics, niaid, n 97.76
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 97.73
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 97.69
3i7f_A 548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.67
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.56
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.51
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.23
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.13
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 97.06
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.83
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.81
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.79
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.74
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 96.67
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 96.44
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 96.22
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 96.0
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 95.81
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 95.17
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 83.42
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 83.36
3qh9_A81 Liprin-beta-2; coiled-coil, dimerization, structur 83.21
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 82.08
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=6.2e-79  Score=632.62  Aligned_cols=330  Identities=31%  Similarity=0.604  Sum_probs=308.9

Q ss_pred             CCCCccCCCccccccchHHHhcCHHHHHHHHHccCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-C
Q 016049           61 NKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSN---ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKL-E  136 (396)
Q Consensus        61 ~~~~~~~~~~~k~mlD~~~ir~n~e~v~~~l~~R~~~---~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-~  136 (396)
                      +..+++    .+||||+++||+|+|.|++++++|+.+   .++|+|+++|++||++++++++|+++||++||+|+.++ .
T Consensus        31 ~~~~~~----~~pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~  106 (501)
T 1wle_A           31 AREGYS----ALPLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN  106 (501)
T ss_dssp             HHTTSS----CCCCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCC----CCCccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344555    468999999999999999999999986   35899999999999999999999999999999997522 1


Q ss_pred             c--------hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCC
Q 016049          137 P--------SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVK  208 (396)
Q Consensus       137 ~--------~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~  208 (396)
                      +        ++.++|++++++|+++|+++++++.+++++++.+++.|||++||+||+|+|++|+++++||+++.|+|+++
T Consensus       107 ~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g~e~~n~~v~~~g~~~~~~f~~~  186 (501)
T 1wle_A          107 QDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKPAFSFQPR  186 (501)
T ss_dssp             HCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCSSGGGCEEEEEESCCCCCSSCCC
T ss_pred             CccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCC
Confidence            1        36778999999999999999999999999999999999999999999997778889999999999999999


Q ss_pred             CHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCccc
Q 016049          209 DHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV  288 (396)
Q Consensus       209 dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~  288 (396)
                      ||++||+++|||||+++++++|+||||+.|.+++|+++|++|+++.+.++||++|.||.|++.++|++||++|+|.+++|
T Consensus       187 dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~em  266 (501)
T 1wle_A          187 GHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQI  266 (501)
T ss_dssp             CHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSS
T ss_pred             CHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876579


Q ss_pred             EEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc--c
Q 016049          289 YSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP--E  363 (396)
Q Consensus       289 y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p--e  363 (396)
                      |++++   +++||+||+|+|++++|+++++++++||+||+++|+|||+|++ +|++++||+|+|||+|+|+|+||+|  +
T Consensus       267 f~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~-~G~d~~GL~RvhqF~kvE~~~f~~pe~e  345 (501)
T 1wle_A          267 YNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLE  345 (501)
T ss_dssp             CBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred             EEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCC-CCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence            99974   4899999999999999999999999999999999999999999 9999999999999999999999999  5


Q ss_pred             chHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049          364 ESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE  395 (396)
Q Consensus       364 ~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~  395 (396)
                      +|++++++|++++++||+.||||||++.+||+
T Consensus       346 ~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tg  377 (501)
T 1wle_A          346 QSSELLEEFLSLQMEILTELGLHFRVLDMPTQ  377 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcEEEEEccCc
Confidence            89999999999999999999999999999985
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens} Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1seta2311 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS 4e-40
d1nyra4 291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 7e-26
d1seta1110 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {T 1e-24
d1qf6a4 291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 1e-23
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 1e-08
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 1e-08
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 8e-08
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 2e-07
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score =  142 bits (359), Expect = 4e-40
 Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 4/206 (1%)

Query: 185 VGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLE 244
           VGGE+ +   K VG P  F+FP  DH  L +    ++    ++VSGS+ Y LK +  + E
Sbjct: 1   VGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPR-ISQVSGSRSYALKGDLALYE 59

Query: 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEI 304
           + L+ + +  + +RGF P+T P   R       G  P   +   ++I   D  L GTAE+
Sbjct: 60  LALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQV-WAIAETDLYLTGTAEV 118

Query: 305 PVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-- 362
            +  +H   IL    LPL+YA ++  FR+EAG+ G   RGL RVHQF K+E +V  +   
Sbjct: 119 VLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASL 178

Query: 363 EESDSYHEELIRIEEDLYSSLGLHFK 388
           E SD   +EL+   E++   L L ++
Sbjct: 179 EASDRAFQELLENAEEILRLLELPYR 204
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291 Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 110 Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 100.0
d1nyra4 291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1qf6a4 291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.96
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.95
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.93
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.92
d1b76a2 331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.84
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.79
d1z7ma1 318 ATP phosphoribosyltransferase regulatory subunit H 99.5
d1h4vb2 324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 99.49
d1atia2 394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.47
d1wu7a2 327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 99.46
d1qe0a2 325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 99.45
d1kmma2 322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 99.45
d1usya_ 275 ATP phosphoribosyltransferase regulatory subunit H 98.93
d1eova2 353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 97.88
d1nnha_ 293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.87
d1c0aa3 346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 97.69
d1b8aa2 335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 97.66
d1e1oa2 342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.65
d1n9wa2 304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.56
d1l0wa3 356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.38
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.25
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 93.67
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=100.00  E-value=7.3e-58  Score=447.75  Aligned_cols=209  Identities=36%  Similarity=0.604  Sum_probs=202.0

Q ss_pred             CCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeee
Q 016049          185 VGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLT  264 (396)
Q Consensus       185 ~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~  264 (396)
                      ||+|++|++|++||++++|+|+++||++||+++||+|+ +++|++|+|||||+|++|+|++||++|+++.+.++||++|.
T Consensus         1 vG~e~~n~~i~~~G~~~~~~f~~k~H~el~~~l~l~d~-~~~k~sG~rfy~l~g~~a~Le~AL~~~~ld~~~~~gy~~v~   79 (311)
T d1seta2           1 VGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMT   79 (311)
T ss_dssp             SSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBCT-THHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCccCCEEEEEECCCCCCCCCCCCHHHHHHHcCCcch-hhceeecCceEEEECHHHHHHHHHHHHHHHhhhcccceEEe
Confidence            68888899999999999999999999999999999995 78899999999999999999999999999999999999999


Q ss_pred             cCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCC
Q 016049          265 TPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRG  344 (396)
Q Consensus       265 tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~G  344 (396)
                      +|+|++.+++++||++|++.+ ++|+++++++||+||||+|++++|+++++++++||+||+++|+|||+|+|++|++++|
T Consensus        80 ~P~lv~~~~~~~~G~~p~f~~-~~y~~~~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trG  158 (311)
T d1seta2          80 LPSYAREKAFLGTGHFPAYRD-QVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRG  158 (311)
T ss_dssp             CCSEEEHHHHHHHTCTTTTGG-GSCBBTTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCST
T ss_pred             echhhccchhhhccccccccc-ccccccccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchh
Confidence            999999999999999999875 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeEEEeeEEEeCC--ccchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049          345 LYRVHQFSKLEMFVFCQ--PEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE  395 (396)
Q Consensus       345 L~RvhQF~kvE~f~f~~--pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~  395 (396)
                      |+|||||+|||+|++|.  |++|.+++++++.++++++++||||||++.+|++
T Consensus       159 L~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~  211 (311)
T d1seta2         159 LMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATG  211 (311)
T ss_dssp             TSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             hhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhccccCC
Confidence            99999999999999994  5789999999999999999999999999999985
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure