Citrus Sinensis ID: 016310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MIMDSPKNPKRPKVYCEFPSFPKGCADSEVLDSRFGYSGVVDSRLNNTPRTYPARRNLKGFPVNRDFPAGCGGNQRILKVFPIKRDFPVGCGGNQKGFPRKGDCPVRCKIQSLDNSFHFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEMREEQSKSMIKNKPLMWERENIIPCNNMLVG
Secondary Structure (PSIPRED)
ccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccEEcHHHHHHHHHcccccccccEEcccccEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHcccccEEEEccccccccccccccEEEEEccEEEEEEEEEEccccccEEEEEEEEEccccccccHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccccccccEEEEccccccEEEcccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccHHccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccEEccccccccccccccccEEEEEEEEEEEccccccccccccccccccEEEEEEEEccccccccccccEEEEEEccccccccccccccHHcHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEccEEEEEEccHcccccccEEEEEEEEccccccccccEccccccccccccccccccccccccccccEcc
Coil and Loop (DISEMBL)
mimdspknpkrpkvycefpsfpkgcadsevldsrfgysgvvdsrlnntprtyparrnlkgfpvnrdfpagcggnqrilkvfpikrdfpvgcggnqkgfprkgdcpvrckiqsldnsfhfndqnkpiievvkplevynglgnsdrEKVKKTLNLFREVVSVLMQEQehehagksgTHKILFKAAKLLKDEkrwintpkrlgsipgvevgdKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVEsgrytndggycdhlliysghggnpkvskdavpedqKLIQGNLAlknsmeaktpVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYwqargpfgnLVFKFLLRSlgqkdyrlDEMREEQSKSmiknkplmwereniipcnnmlvg
Flexible Loop (DISEMBL)
mimdspknpkrpkvycEFPSFPKGCADSEVLDSRFGYsgvvdsrlnntprtyparrnlkgfpvNRDFPAGCGGNQRILKVFPIKRDFPVGCGGnqkgfprkgdCPVRCKIQSLdnsfhfndqnkpiiEVVKPLEVYNglgnsdrekVKKTLNLFREVVSVLMQEQEhehagksgthkILFKAAKLLKDEKrwintpkrlgsipgveVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGnlalknsmeaktpvrVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKdyrldemreeqsksmiknkplmwereniipcnnmlvg
Low Complexity Region (SEG)
MIMDSPKNPKRPKVYCEFPSFPKGCADSEVLDSRFGYSGVVDSRLNNTPRTYPARRNLKGFPVNRDFPAGCGGNQRILKVFPIKRDFPVGCGGNQKGFPRKGDCPVRCKIQSLDNSFHFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEMREEQSKSMIKNKPLMWERENIIPCNNMLVG
Disordered region (IsUnstruct)
*************VYCEFPSFPKGCADSEVLDSRFGYSGVVDSRLNNTPRTYPARRNLKGFPVNRDFPAGCGGNQRILKVFPIKRDFPVGCGGNQKGFPRKGDCPVRCKIQSLDNSFHFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQ***********THKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHG*******************NLAL****EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDY*******************MWERENIIPC******
Disordered Region (DISOPRED)
*******************S**K**A***********************************************************************************************************************KVKKTLNLFREVVS***********************AKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGH*****************IQGNLALKNSMEAKTPVRVIRGIKNL****MKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQK************************RENIIPCNNMLVG
Disordered Region (DISEMBL)
***********PKVYCEFPSFPKGCADSEVLDSRFGYSGVVDSRLNNTPRTYPARRNLKGFPVNRDFPAGCGGNQRILKVFPIKRDFPVGCGGNQKGFPRKGDCPVRCKIQSLDNSFHFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQ**********GTHKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEMREEQSKSMIKNKPLMWERENIIPCNNMLVG
Disordered Region (DISPRO)
****SPKNPKRPKVYCEFPSFPKGCADSEVLDSRFGYSGVVDSRLNNTPRTYPARRNLKGFPVNRDFPAGCGGNQRILKVFPIKRDFPVGC*************PVRC*I*SLDNSFHF**QNKPIIEVVKP******LGNSDREKVKKTLNLFREVVSVLMQEQEH******GTHKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVS*DAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEM*****KSMIKNKPLMWERENIIPCNNMLVG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIMDSPKNPKRPKVYCEFPSFPKGCADSEVLDSRFGYSGVVDSRLNNTPRTYPARRNLKGFPVNRDFPAGCGGNQRILKVFPIKRDFPVGCGGNQKGFPRKGDCPVRCKIQSLDNSFHFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEMREEQSKSMIKNKPLMWERENIIPCNNMLVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
O82175	794	Histone-lysine N-methyltr	yes	no	0.531	0.261	0.5	3e-47
Q8VZ17	790	Histone-lysine N-methyltr	no	no	0.552	0.273	0.456	2e-41
Q9LVU3	415	YDG domain-containing pro	no	no	0.580	0.546	0.393	2e-39
Q9FHI0	328	YDG domain-containing pro	no	no	0.682	0.814	0.361	4e-37
Q9FF80	670	Histone-lysine N-methyltr	no	no	0.524	0.305	0.399	1e-30
O22781	651	Histone-lysine N-methyltr	no	no	0.565	0.339	0.384	1e-28
Q9C5P4	669	Histone-lysine N-methyltr	no	no	0.649	0.379	0.360	5e-28
Q9T0G7	650	Probable histone-lysine N	no	no	0.503	0.303	0.375	6e-27
Q8GZB6	624	Histone-lysine N-methyltr	no	no	0.514	0.322	0.376	2e-24
Q93YF5	704	Histone-lysine N-methyltr	N/A	no	0.531	0.295	0.389	2e-24

>sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/218 (50%), Positives = 150/218 (68%), Gaps = 10/218 (4%)

Query: 140 GNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTH-KILFKAAKLLKDE-KRWINTPK 197
           G+S R KVK+T+ LF E    +MQE+E     + G + K++ +A+K+LK + K   +  +
Sbjct: 303 GDSARYKVKETMRLFHETCKKIMQEEEARPRKRDGGNFKVVCEASKILKSKGKNLYSGTQ 362

Query: 198 RLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM-EEGGKLLATSIVESGRYTNDGGY 256
            +G++PGVEVGD+FQ+R E+ ++G+H+   +GIDYM ++GG+L+ATSIV SG Y ND   
Sbjct: 363 IIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGY-NDVLD 421

Query: 257 CDHLLIYSGHGGN-PKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKN--LVASV 313
              +LIY+G GGN  K   +  P+DQ+L+ GNLALKNS+  K PVRVIRGIKN  L +SV
Sbjct: 422 NSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSV 481

Query: 314 MKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL 351
           + KN   YVYDGLY VE YW+  G  G LVFKF LR +
Sbjct: 482 VAKN---YVYDGLYLVEEYWEETGSHGKLVFKFKLRRI 516

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 141/239 (58%), Gaps = 23/239 (9%)

Query: 144 REKVKKTLNLFREVVSVLMQEQE---HEHAGKSGTHKILFKAAKLLKDEKRWINTPKR-L 199
           R KVK+TL LF  V   ++QE E    +   K    +I F+A+ +LK   +++N+    L
Sbjct: 270 RNKVKETLRLFHGVCRKILQEDEAKPEDQRRKGKGLRIDFEASTILKRNGKFLNSGVHIL 329

Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G +PGVEVGD+FQ+R E+ I+G+H+    GIDYM+ G   +ATSIV S      GGY DH
Sbjct: 330 GEVPGVEVGDEFQYRMELNILGIHKPSQAGIDYMKYGKAKVATSIVAS------GGYDDH 383

Query: 260 L-----LIYSGHGGN-----PKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNL 309
           L     L Y+G GGN      K  +   PEDQKLI GNLAL  S+E +TPVRVIRG    
Sbjct: 384 LDNSDVLTYTGQGGNVMQVKKKGEELKEPEDQKLITGNLALATSIEKQTPVRVIRGKHKS 443

Query: 310 VASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEMREEQSK 367
                K  N  YVYDGLY VE+YWQ  G  G  VFKF LR + GQ +    E+++ +SK
Sbjct: 444 THDKSKGGN--YVYDGLYLVEKYWQQVGSHGMNVFKFQLRRIPGQPELSWVEVKKSKSK 500

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Seems to act preferentially on dsMRNA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9LVU3|YDG2_ARATH YDG domain-containing protein At5g47160 OS=Arabidopsis thaliana GN=At5g47160 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 145/239 (60%), Gaps = 12/239 (5%)

Query: 118 HFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQEQEHEHAG-KSGTH 176
           H +++   ++ V++   +   L  + R+KV++ L +F  V   L + +     G ++   
Sbjct: 181 HKDERRSGVLSVIQRNRLSKDL--TPRQKVQEVLRIFTLVFDELDRNKAARRGGSETAKS 238

Query: 177 KILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEG 236
           +I ++   +L++    +N+ KR+GS+PG++VGDK Q++  +++IGLH    +GIDYM +G
Sbjct: 239 RIDYQTWTILREMGMQVNSQKRIGSVPGIKVGDKIQFKAALSVIGLHFGIMSGIDYMYKG 298

Query: 237 GKLLATSIVESGRYTNDGG--YCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSM 294
            K +ATSIV S    ND G  + + ++IY G GGN +       +DQKL+ GNLAL NS+
Sbjct: 299 NKEVATSIVSS--EGNDYGDRFINDVMIYCGQGGNMRSKDHKAIKDQKLVGGNLALANSI 356

Query: 295 EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQ 353
           + KTPVRVIRG + L           YVYDGLY VE+YW+ RGP GN++FKF LR   Q
Sbjct: 357 KEKTPVRVIRGERRL-----DNRGKDYVYDGLYRVEKYWEERGPQGNILFKFKLRRTCQ 410

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHI0|YDG1_ARATH YDG domain-containing protein At5g47150 OS=Arabidopsis thaliana GN=At5g47150 PE=2 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 164/324 (50%), Gaps = 57/324 (17%)

Query: 80  VFPIKRDFPVGCGGN-----------QKGF--PRKGDCP-------------VRCKIQSL 113
           VF I RDFP GCG +           +K F  PR GD                  K +S 
Sbjct: 8   VFAI-RDFPPGCGTHIDVSSSLNHPAEKAFKHPRTGDVSGENLSFAEAKPEGTCLKRESA 66

Query: 114 DNSFHF-----NDQNKPIIE--VVKPLEVYNG---------LGNSD-----REKVKKTLN 152
           D    F     N + +P  +  VV    V            +GNSD     REKV + L+
Sbjct: 67  DQDHIFAAPEHNAKREPAGQDHVVAATTVAYATSSHRQKVEIGNSDCDPTPREKVLEVLS 126

Query: 153 LFREVVSVLMQEQEHEHAGK--SGTHKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDK 210
           LF++V + L ++++    G     T +I  K   +L+   + +NT KR+GS+PG+ +GD 
Sbjct: 127 LFKQVYNQLDRDKKARRGGDFLDATSRIDLKTLTVLEKMGKQVNTEKRIGSVPGINIGDV 186

Query: 211 FQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNP 270
           FQ++ E+ ++GLH +   GIDY++ G   + TSIV S  Y  +  Y   +++Y+G GGN 
Sbjct: 187 FQYKTELRVVGLHSKPMCGIDYIKLGDDRITTSIVASEGYGYNDTYNSGVMVYTGEGGNV 246

Query: 271 KVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVE 330
            ++K    EDQKL++GNLAL  SM  K+ VRVIRG + L      +    YVYDGLY VE
Sbjct: 247 -INKQKKTEDQKLVKGNLALATSMRQKSQVRVIRGEERL-----DRKGKRYVYDGLYMVE 300

Query: 331 RYWQARGPFGNLVFKF-LLRSLGQ 353
            YW  R   G  V+KF L R  GQ
Sbjct: 301 EYWVERDVRGKSVYKFKLCRIPGQ 324

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 118/218 (54%), Gaps = 13/218 (5%)

Query: 141 NSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLG 200
           N +RE V   L  F  +     Q ++ + A      +   K+           NT KR G
Sbjct: 152 NGNRELVLSVLMRFDALRRRFAQLEDAKEAVSGIIKRPDLKSGSTCMGRGVRTNTKKRPG 211

Query: 201 SIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKL----LATSIVESGRYTNDGGY 256
            +PGVE+GD F +RFEM ++GLH     GIDY+   G+     +ATSIV SG Y ND G 
Sbjct: 212 IVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVVKGETEEEPIATSIVSSGYYDNDEGN 271

Query: 257 CDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKK 316
            D +LIY+G GGN    KD    DQKL +GNLAL+ S+   + VRVIRG+K         
Sbjct: 272 PD-VLIYTGQGGN--ADKDKQSSDQKLERGNLALEKSLRRDSAVRVIRGLKE-----ASH 323

Query: 317 NNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
           N  +Y+YDGLY ++  W  +G  G+  FK+ L+R+ GQ
Sbjct: 324 NAKIYIYDGLYEIKESWVEKGKSGHNTFKYKLVRAPGQ 361

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O22781|SUVH2_ARATH Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 131/242 (54%), Gaps = 21/242 (8%)

Query: 144 REKVKKTLNLFREVVSVLMQEQEHEHA-GKSGTHKILFKAAKLLKDEKRWINTPKRL-GS 201
           R+ +K+T   +  +   LM E    H  G+    +    AA +++D   W+N  K + G 
Sbjct: 149 RQVMKRTRMTYESLRIHLMAESMKNHVLGQGRRRRSDMAAAYIMRDRGLWLNYDKHIVGP 208

Query: 202 IPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM----EEGGKLLATSIVESGRYTNDGGYC 257
           + GVEVGD F +R E+ ++GLH Q   GID +       G+ +ATSIV SG Y +D    
Sbjct: 209 VTGVEVGDIFFYRMELCVLGLHGQTQAGIDCLTAERSATGEPIATSIVVSGGYEDDEDTG 268

Query: 258 DHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIK--NLVASVMK 315
           D +L+Y+GHGG     K    ++Q+L+ GNL ++ SM     VRVIRGIK  N ++S   
Sbjct: 269 D-VLVYTGHGGQDHQHKQC--DNQRLVGGNLGMERSMHYGIEVRVIRGIKYENSISS--- 322

Query: 316 KNNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQKDYRLDEMREEQSKSMIKNKP 374
               VYVYDGLY +  +W A G  G  VFKF L+R  GQ       MR  Q+   ++NKP
Sbjct: 323 ---KVYVYDGLYKIVDWWFAVGKSGFGVFKFRLVRIEGQPMMGSAVMRFAQT---LRNKP 376

Query: 375 LM 376
            M
Sbjct: 377 SM 378

Histone methyltransferase. Methylates 'Lys-9' and 'Lys-27' of histone H3, 'Lys-20' of H4, and cytosine. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Plays a central role in gene silencing.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 146/283 (51%), Gaps = 29/283 (10%)

Query: 82  PIKRDFPVGCGGNQKGFPR-KGDCPVRCK-IQSLDNSFHFNDQNKPIIEVVKPL--EVYN 137
           P K + P    G ++G  R KG   V+ K  +++ N  + +      ++VVK    +  +
Sbjct: 95  PTKTNGPSSSSGTKRGVGRPKGTTSVKKKEKKTVANEPNLD------VQVVKKFSSDFDS 148

Query: 138 GLGNSDREKVKKTLNLFREVVSVLMQ--EQEHEHAGKSGTHKILFKAAKLLKDEKRWINT 195
           G+  ++RE     L     V SVLM+        +    T     KAA  L       N 
Sbjct: 149 GISAAEREDGNAYL-----VSSVLMRFDAVRRRLSQVEFTKSATSKAAGTLMSNGVRTNM 203

Query: 196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDY-MEEGG---KLLATSIVESGRYT 251
            KR+G++PG+EVGD F  R EM ++GLH Q   GIDY + + G   + LATSIV SGRY 
Sbjct: 204 KKRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYIISKAGSDEESLATSIVSSGRYE 263

Query: 252 NDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVA 311
            +    +  LIYSG GGN   ++ A   DQKL +GNLAL+NS+     VRV+RG ++  +
Sbjct: 264 GEAQDPES-LIYSGQGGNADKNRQA--SDQKLERGNLALENSLRKGNGVRVVRGEEDAAS 320

Query: 312 SVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
              K    +Y+YDGLY +   W  +G  G   FK+ L+R  GQ
Sbjct: 321 KTGK----IYIYDGLYSISESWVEKGKSGCNTFKYKLVRQPGQ 359

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9T0G7|SUVH9_ARATH Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 32/229 (13%)

Query: 144 REKVKKTLNLFREVVSVLMQEQEHEHA---------GKSGTHKILFKAAKLLKDEKRWIN 194
           RE V+KT  ++  +   LM E+   +          GK+G      KA  +++D   W+N
Sbjct: 145 REHVRKTRMIYDSLRMFLMMEEAKRNGVGGRRARADGKAG------KAGSMMRDCMLWMN 198

Query: 195 TPKRL-GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDY----MEEGGKLLATSIVESGR 249
             KR+ GSIPGV+VGD F +RFE+ ++GLH    +GID+    +   G+ +ATS++ SG 
Sbjct: 199 RDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGG 258

Query: 250 YTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIK-- 307
           Y +D    D +++Y+G GG  ++ + A  E Q+L  GNLA++ SM     VRVIRG+K  
Sbjct: 259 YEDDDDQGD-VIMYTGQGGQDRLGRQA--EHQRLEGGNLAMERSMYYGIEVRVIRGLKYE 315

Query: 308 NLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKD 355
           N V+S       VYVYDGL+ +   W   G  G  VFK+ L  + GQ +
Sbjct: 316 NEVSS------RVYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAE 358

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 117/226 (51%), Gaps = 25/226 (11%)

Query: 146 KVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRL-GSIPG 204
           KV K L LF +   + +Q +      K  T  I  KA          I  P+++ G +PG
Sbjct: 104 KVTKCLRLFNKQYLLCVQAKLSRPDLKGVTEMIKAKA----------ILYPRKIIGDLPG 153

Query: 205 VEVGDKFQWRFEMTIIGLHQQFNNGIDYME-------EGGKL-LATSIVESGRYTNDGGY 256
           ++VG +F  R EM  +G H  + NGIDYM           KL LA SIV SG+Y +D   
Sbjct: 154 IDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYEKEYSNYKLPLAVSIVMSGQYEDDLDN 213

Query: 257 CDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKK 316
            D  + Y+G GG+         +DQ L +GNLALK+  E   PVRV RG  N  +S  K+
Sbjct: 214 AD-TVTYTGQGGHNLTGNKRQIKDQLLERGNLALKHCCEYNVPVRVTRG-HNCKSSYTKR 271

Query: 317 NNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEM 361
              VY YDGLY VE++W  +G  G  V+K+ L+ L GQ +   D++
Sbjct: 272 ---VYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRLEGQPELTTDQV 314

Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. The silencing mechanism via DNA CpNpG methylation requires the targeting of chromomethylase CMT3 to methylated histones, probably through an interaction with an HP1-like adapter. By its function, KYP is directly required for the maintenance of the DNA CpNpG and asymmetric methylation. Involved in the silencing of transposable elements.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 119/221 (53%), Gaps = 13/221 (5%)

Query: 140 GNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRL 199
            + D+E   + L +F      + Q  E      SG    L KA+ +L  +    N  KR+
Sbjct: 206 ADGDKELAGRVLLVFDLFRRRMTQIDESRDGPGSGRRPDL-KASNMLMTKGVRTNQTKRI 264

Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKL----LATSIVESGRYTNDGG 255
           G+ PG+EVGD F +R E+ ++GLH     GIDYM     +    LA SIV SG Y +DGG
Sbjct: 265 GNAPGIEVGDIFFFRMELCLVGLHAPTMAGIDYMSVKLTMDEEPLAVSIVSSGGYDDDGG 324

Query: 256 YCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMK 315
               +LIY+G GG  +  KD    DQKL +GNLAL+ S+     VRVIRG+K++     K
Sbjct: 325 D-GDVLIYTGQGGVQR--KDGQVFDQKLERGNLALEKSVHRANEVRVIRGVKDVAYPTGK 381

Query: 316 KNNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQKD 355
               +Y+YDGLY ++  W  +   G  VFK+ LLR  GQ +
Sbjct: 382 ----IYIYDGLYKIQESWAEKNKVGCNVFKYKLLRVPGQPE 418

Histone methyltransferase. Methylates in vitro both 'Lys-9' and 'Lys-27' of histone H3. Required for in vivo dimethylation of 'Lys-9'. H3 'Lys-9' methylation represents a specific tag for epigenetic control for plant development and transcriptional repression.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
225454965	862	PREDICTED: histone-lysine N-methyltransf	0.598	0.271	0.486	7e-54
297744987	556	unnamed protein product [Vitis vinifera]	0.542	0.381	0.515	2e-51
147845927	959	hypothetical protein VITISV_029999 [Viti	0.560	0.228	0.510	2e-51
359490110	882	PREDICTED: histone-lysine N-methyltransf	0.565	0.250	0.504	2e-51
224136396	404	hypothetical protein POPTRDRAFT_575518 [	0.846	0.819	0.392	6e-50
297744968	443	unnamed protein product [Vitis vinifera]	0.409	0.361	0.596	7e-49
356497095	561	PREDICTED: histone-lysine N-methyltransf	0.539	0.376	0.504	2e-47
357482201	1091	Histone-lysine N-methyltransferase, H3 l	0.583	0.208	0.473	5e-47
356495570	487	PREDICTED: uncharacterized protein LOC10	0.572	0.459	0.469	7e-47
224126633	513	SET domain protein [Populus trichocarpa]	0.529	0.403	0.511	9e-47

>gi|225454965|ref|XP_002277774.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 [Vitis vinifera]

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/257 (48%), Positives = 166/257 (64%), Gaps = 23/257 (8%)

Query: 120 NDQNKPIIE-VVKPLEV----YNGLGNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSG 174
           +D+ K ++   VK +E+    +  +GN+ R  V+  LNLF+E++  L +E     A  +G
Sbjct: 335 DDRGKNVLRNTVKEIEICSKDHQAIGNNSR--VQGALNLFQELLEKLRRE-----AILTG 387

Query: 175 THKILFK----AAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGI 230
              +L K    AA  LK +++W+NT KRLG + G+EVGD F +R E+ IIGLH  F NGI
Sbjct: 388 KKNVLRKLPVTAAMTLKRQQKWVNTTKRLGHVSGIEVGDTFHYRVELAIIGLHSHFQNGI 447

Query: 231 DYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLAL 290
           DYME+ GK+LA S+V+SGRY ND    D +LIY G GGNP V  +  PEDQKL +GNLAL
Sbjct: 448 DYMEKDGKVLAISVVDSGRYANDKESSD-VLIYLGQGGNPMVGYNKQPEDQKLERGNLAL 506

Query: 291 KNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRS 350
           KNSM+AKTPVRV RG +      MK  +  Y YDGLYFV++YWQ RG FG LVFKF L+ 
Sbjct: 507 KNSMDAKTPVRVTRGFQ-----AMKVTSNGYTYDGLYFVDKYWQERGQFGKLVFKFQLKR 561

Query: 351 LGQKDYRLDEMREEQSK 367
           +   + + D+    QSK
Sbjct: 562 I-TGEPKFDQRELNQSK 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744987|emb|CBI38579.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 9/221 (4%)

Query: 146 KVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGV 205
           +V+  LNLF+E++  L  E       K    K+  +AA  LK +++W+NT KRLG +PG+
Sbjct: 57  RVQGALNLFQELLEKLTHEASLTMK-KVIISKLHVEAAMTLKRQQKWVNTTKRLGHVPGI 115

Query: 206 EVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSG 265
           EVGD F++R E+ IIGLH  F NGIDYME+ GK+LA SIV+SGRY ND    D +LIYSG
Sbjct: 116 EVGDTFRYRVELCIIGLHSHFQNGIDYMEKDGKILAISIVDSGRYANDKESSD-ILIYSG 174

Query: 266 HGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDG 325
            GGNP V      EDQKL +GNLALKNSM+AKTPVRV RG +       K  +  Y YDG
Sbjct: 175 QGGNPMVGHKQA-EDQKLERGNLALKNSMDAKTPVRVTRGFQ-----ATKVTSQGYTYDG 228

Query: 326 LYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEMREEQ 365
           LYFV++YWQ  G FG L+FK+ L+ + GQ    L E  E +
Sbjct: 229 LYFVDKYWQEIGQFGTLIFKYQLKRIRGQPKCNLREFNESK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845927|emb|CAN80078.1| hypothetical protein VITISV_029999 [Vitis vinifera]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/229 (51%), Positives = 150/229 (65%), Gaps = 10/229 (4%)

Query: 146 KVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGV 205
           +V+  LNLF+E++  L  E       K    K+  +AA  LK +++W+NT KRLG +PG+
Sbjct: 370 RVQGALNLFQELLEKLTHEASLTMK-KVIISKLHVEAAMTLKRQQKWVNTTKRLGHVPGI 428

Query: 206 EVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSG 265
           EVGD F++R E+ IIGLH  F NGIDYME+ GK+LA SIV+SGRY ND    D +LIYSG
Sbjct: 429 EVGDTFRYRVELCIIGLHSHFQNGIDYMEKDGKILAISIVDSGRYANDKESSD-ILIYSG 487

Query: 266 HGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDG 325
            GGNP V      EDQKL +GNLALKNSM+AKTPVRV RG +       K  +  Y YDG
Sbjct: 488 QGGNPMVGHKQA-EDQKLERGNLALKNSMDAKTPVRVTRGFQ-----ATKVTSQGYTYDG 541

Query: 326 LYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEMREEQSKSMIKNK 373
           LYFV++YWQ  G FG L+FK+ L+ + GQ    L E  E + KS ++ K
Sbjct: 542 LYFVDKYWQEIGQFGTLIFKYQLKRIRGQPKCNLREFNESK-KSKVRWK 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490110|ref|XP_002278447.2| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Vitis vinifera]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/230 (50%), Positives = 148/230 (64%), Gaps = 9/230 (3%)

Query: 146 KVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGV 205
           +V+  LNLF+E++  L  E       K    K+  +AA  LK +++W+NT KRLG +PG+
Sbjct: 370 RVQGALNLFQELLEKLTHEASLTMK-KVIISKLHVEAAMTLKRQQKWVNTTKRLGHVPGI 428

Query: 206 EVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSG 265
           EVGD F++R E+ IIGLH  F NGIDYME+ GK+LA SIV+SGRY ND    D +LIYSG
Sbjct: 429 EVGDTFRYRVELCIIGLHSHFQNGIDYMEKDGKILAISIVDSGRYANDKESSD-ILIYSG 487

Query: 266 HGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDG 325
            GGNP V      EDQKL +GNLALKNSM+AKTPVRV RG +       K  +  Y YDG
Sbjct: 488 QGGNPMVGHKQA-EDQKLERGNLALKNSMDAKTPVRVTRGFQ-----ATKVTSQGYTYDG 541

Query: 326 LYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEMREEQSKSMIKNKP 374
           LYFV++YWQ  G FG L+FK+ L+ + GQ   R      + S+    NKP
Sbjct: 542 LYFVDKYWQEIGQFGTLIFKYQLKRIRGQPKLRWKITFNDISRGRELNKP 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136396|ref|XP_002322319.1| hypothetical protein POPTRDRAFT_575518 [Populus trichocarpa] gi|224136400|ref|XP_002322320.1| hypothetical protein POPTRDRAFT_575519 [Populus trichocarpa] gi|222869315|gb|EEF06446.1| hypothetical protein POPTRDRAFT_575518 [Populus trichocarpa] gi|222869316|gb|EEF06447.1| hypothetical protein POPTRDRAFT_575519 [Populus trichocarpa]

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 144/367 (39%), Positives = 195/367 (53%), Gaps = 36/367 (9%)

Query: 21  FPKGCAD-SEVLDSRFGYSGVVDSR-------LNNTPRTYPARRNLKGFPVNRDFPAGCG 72
           FPK C     V+DSR G   +VD              R YP  R LKG  V RDFP+G G
Sbjct: 25  FPKVCGIFPVVMDSRDGEDYIVDHVQPPQNPVTQAARRKYPPPRILKGSSVQRDFPSGFG 84

Query: 73  GNQRILK--VFPIKRDFPVGCGGNQKGFPRKGDCPVRC-----KIQSLDNSFHFNDQNKP 125
             +  +K  +F +  D      G Q  F  + +             S+       ++ K 
Sbjct: 85  QVRSAVKQNLFSVSHDISSHGCGKQNSFVSQENASENSYAGNQNFSSVSKKIFAQNKKKF 144

Query: 126 IIEVVKPLEVYNGLGNSDR----------EKVKKTLNLFREVVSVLMQEQEHEHAGKSGT 175
           I+   + +     LGN +           +KVK+ L LF   ++ L +E   +   +   
Sbjct: 145 IVADYRSMRSDGTLGNKETGGHRGSSASCDKVKEVLRLFHLTLAKLSKENLAKPKMER-E 203

Query: 176 HKILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEE 235
             +  KAA L+KD ++WI+T KR+G + GV +GDKF+++ E+ +IGLH  F NGIDYM++
Sbjct: 204 FNVPRKAAILIKDHQKWIDTSKRVGPVLGVNIGDKFRFQAELNVIGLHCHFYNGIDYMKK 263

Query: 236 GGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSME 295
            G  LATSIV S RY N+    D +LIYSGHGGNP V      +DQKL  GNLALK+SM+
Sbjct: 264 KGISLATSIVVSERYPNNMESYD-VLIYSGHGGNPTVRGRQAVKDQKLQLGNLALKHSMD 322

Query: 296 AKTPVRVIRGIK-------NLVASVMKKN-NVVYVYDGLYFVERYWQARGPFGNLVFKF- 346
            KTPVRVI  +K       +L  +   KN N ++VYDGLY VE +W+ RG FG LVFKF 
Sbjct: 323 RKTPVRVIYKVKLKSSKTFSLKGTGWSKNLNPIFVYDGLYIVEEFWEERGEFGKLVFKFK 382

Query: 347 LLRSLGQ 353
           L R+L Q
Sbjct: 383 LKRNLDQ 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744968|emb|CBI38560.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 121/166 (72%), Gaps = 6/166 (3%)

Query: 186 LKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIV 245
           LK +++W+NT KRLG + G+EVGD F +R E+ IIGLH  F NGIDYME+ GK+LA S+V
Sbjct: 3   LKRQQKWVNTTKRLGHVSGIEVGDTFHYRVELAIIGLHSHFQNGIDYMEKDGKVLAISVV 62

Query: 246 ESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRG 305
           +SGRY ND    D +LIY G GGNP V  +  PEDQKL +GNLALKNSM+AKTPVRV RG
Sbjct: 63  DSGRYANDKESSD-VLIYLGQGGNPMVGYNKQPEDQKLERGNLALKNSMDAKTPVRVTRG 121

Query: 306 IKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL 351
            +      MK  +  Y YDGLYFV++YWQ RG FG LVFKF L+ +
Sbjct: 122 FQ-----AMKVTSNGYTYDGLYFVDKYWQERGQFGKLVFKFQLKRI 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497095|ref|XP_003517399.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Glycine max]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/220 (50%), Positives = 148/220 (67%), Gaps = 9/220 (4%)

Query: 141 NSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKR-L 199
           N  R+KV+KTL LF+ V   L+QE E + + ++ + ++   AAK+LK+   ++N+ K+ L
Sbjct: 50  NVTRKKVRKTLRLFQVVFRKLLQEVESKLSERANSKRVDLIAAKILKENGHYVNSGKQIL 109

Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G +PGVEVGD+FQ+R E+ I+GLH+Q   GIDY+++ GK+LATSIV SG Y +D    D 
Sbjct: 110 GDVPGVEVGDEFQYRVELNIVGLHRQIQGGIDYVKQNGKILATSIVASGAYADDLDNSDG 169

Query: 260 LLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNV 319
            LIY+G GGN  ++ D  PEDQKL +GNLALKNS+E K  VRVIRG     +  M     
Sbjct: 170 -LIYTGQGGNV-MNTDKEPEDQKLERGNLALKNSIEEKNSVRVIRG-----SESMDGKCR 222

Query: 320 VYVYDGLYFVERYWQARGPFGNLVFKFLLRS-LGQKDYRL 358
           +YVYDGLY VE  WQ  GP G LV+KF LR  LGQ +  L
Sbjct: 223 IYVYDGLYVVESCWQDVGPHGKLVYKFRLRRILGQPELAL 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482201|ref|XP_003611386.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Medicago truncatula] gi|355512721|gb|AES94344.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Medicago truncatula]

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/249 (47%), Positives = 155/249 (62%), Gaps = 21/249 (8%)

Query: 115 NSFHFNDQNKPIIEVVKPLEVYN--GLGNSD----------REKVKKTLNLFREVVSVLM 162
           NS   N+ NK    V KP    N   LG S+          R KV+KTL LF+ V   L+
Sbjct: 540 NSLDPNENNKHFKSVPKPRGYVNVFPLGRSNLSGHESDSVARNKVRKTLRLFQAVCRKLL 599

Query: 163 QEQEHE-HAGKSGTHKILFKAAKLLKDEKRWINTPKR-LGSIPGVEVGDKFQWRFEMTII 220
           QE E +  +    + ++  +A+K+LK++  ++N  ++ +GS+PGVEVGD+FQ+R E+ II
Sbjct: 600 QEAEAKPKSNVKESKRVDLQASKILKEKGSYVNEGEKIMGSVPGVEVGDEFQYRIELNII 659

Query: 221 GLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPED 280
           GLH+Q   GIDYM++  K+LATSIV SG Y +D    D +LIY+G GGN  +S D  PED
Sbjct: 660 GLHRQIQGGIDYMKQKNKVLATSIVASGGYADDLDNAD-VLIYTGQGGN-VMSSDKEPED 717

Query: 281 QKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFG 340
           QKL +GNLALKNS E K  VRVIRG     +      + +YVYDGLY VE YWQ  GP G
Sbjct: 718 QKLERGNLALKNSSEVKNSVRVIRG-----SESADGKSRIYVYDGLYEVESYWQDMGPHG 772

Query: 341 NLVFKFLLR 349
            LV+KF LR
Sbjct: 773 KLVYKFRLR 781

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495570|ref|XP_003516648.1| PREDICTED: uncharacterized protein LOC100783959 [Glycine max]

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 153/243 (62%), Gaps = 19/243 (7%)

Query: 130 VKPLEVYNGLGN-SDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKD 188
           V P    N +GN +DR+KV++TL LF+ V   L++E E +        ++   AA++LKD
Sbjct: 243 VTPSSHSNFIGNENDRKKVRETLQLFQVVSRKLLEEGESKSNELGKRKRVDLIAARILKD 302

Query: 189 EKRWINTPKR-LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVES 247
               +N+ K+ LG +PGVEVGD+FQ+R E+ IIGLH+Q   GIDY++  GK+LATSIV S
Sbjct: 303 NGNHVNSGKKILGPVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYVKHNGKILATSIVAS 362

Query: 248 GRYTNDGGYCDHL-----LIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRV 302
                 GGY D+L     L+Y+G GGN  +S D  PEDQKL +GNLALKNS E K PVRV
Sbjct: 363 ------GGYADYLVNSDILVYTGQGGNV-MSNDRKPEDQKLERGNLALKNSSEEKNPVRV 415

Query: 303 IRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEMR 362
           IRG     +  M      YVYDGLY VE YWQ RG  G LV++F L+ +  +   L E++
Sbjct: 416 IRG-----SEAMDDKYKTYVYDGLYVVETYWQDRGSHGKLVYRFRLQRIPGQKLALKEVK 470

Query: 363 EEQ 365
           + +
Sbjct: 471 KSK 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126633|ref|XP_002329603.1| SET domain protein [Populus trichocarpa] gi|222870312|gb|EEF07443.1| SET domain protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 146/213 (68%), Gaps = 6/213 (2%)

Query: 144 REKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHK-ILFKAAKLLKDEKRWINTPKRL-GS 201
           R KV++TL LF+ +   L+ E+E     +  T + +  +A+K+LK++ +++N  +R+ GS
Sbjct: 2   RNKVRETLRLFQAICRKLLHEEEANFKERGNTRRRVDLQASKILKEKGKYVNIGERIIGS 61

Query: 202 IPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLL 261
           +PGVEVGD+F +R E+ I+GLH+Q   GIDYM++ GKLLATSIV SG Y +D    D +L
Sbjct: 62  VPGVEVGDEFIYRVELNIVGLHRQIQGGIDYMKQDGKLLATSIVSSGAYDDDTDNSD-VL 120

Query: 262 IYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVY 321
           IY+G GGN  +S D  PEDQKL +GNLALKNSM+AK PVRVIRG      SV  +    Y
Sbjct: 121 IYTGSGGN-MMSGDKEPEDQKLERGNLALKNSMDAKNPVRVIRGDSKGADSVDARGR-TY 178

Query: 322 VYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
           +YDGLY VE+ WQ  G  G LVFKF L+R  GQ
Sbjct: 179 IYDGLYLVEKCWQEIGSHGKLVFKFKLVRIQGQ 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2063384	794	SUVH5 "SU(VAR)3-9 homolog 5" [	0.583	0.287	0.475	5.7e-48
TAIR|locus:2065988	790	SUVH6 "SU(VAR)3-9 homolog 6" [	0.575	0.284	0.462	1.3e-44
TAIR|locus:2171574	415	AT5G47160 [Arabidopsis thalian	0.565	0.532	0.409	1.5e-41
TAIR|locus:2151997	328	AT5G47150 [Arabidopsis thalian	0.534	0.637	0.412	2.2e-40
TAIR|locus:2175289	670	SUVH1 "SU(VAR)3-9 homolog 1" [	0.524	0.305	0.408	2.6e-30
TAIR|locus:2032592	669	SUVH3 "SU(VAR)3-9 homolog 3" [	0.652	0.381	0.372	1.2e-29
TAIR|locus:2051083	651	SUVH2 "SU(VAR)3-9 homolog 2" [	0.570	0.342	0.391	1.8e-29
TAIR|locus:2140827	650	SUVH9 "SU(VAR)3-9 homolog 9" [	0.519	0.312	0.372	5.6e-27
TAIR|locus:2159133	624	SUVH4 "SU(VAR)3-9 homolog 4" [	0.516	0.323	0.377	1.2e-24
TAIR|locus:2047266	755	SDG21 "SET domain group 21" [A	0.368	0.190	0.430	1.7e-20

TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 5.7e-48, P = 5.7e-48
 Identities = 114/240 (47%), Positives = 161/240 (67%)

Query:   140 GNSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTH-KILFKAAKLLKDE-KRWINTPK 197
             G+S R KVK+T+ LF E    +MQE+E     + G + K++ +A+K+LK + K   +  +
Sbjct:   303 GDSARYKVKETMRLFHETCKKIMQEEEARPRKRDGGNFKVVCEASKILKSKGKNLYSGTQ 362

Query:   198 RLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM-EEGGKLLATSIVESGRYTNDGGY 256
              +G++PGVEVGD+FQ+R E+ ++G+H+   +GIDYM ++GG+L+ATSIV SG Y ND   
Sbjct:   363 IIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGY-NDVLD 421

Query:   257 CDHLLIYSGHGGNP-KVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKN--LVASV 313
                +LIY+G GGN  K   +  P+DQ+L+ GNLALKNS+  K PVRVIRGIKN  L +SV
Sbjct:   422 NSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSV 481

Query:   314 MKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEMREEQSKSMIKN 372
             + KN   YVYDGLY VE YW+  G  G LVFKF LR + GQ +    E+ + + KS  ++
Sbjct:   482 VAKN---YVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEVAKSK-KSEFRD 537

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS;IDA

GO:0010216 "maintenance of DNA methylation" evidence=IGI

GO:0016571 "histone methylation" evidence=RCA;IDA

GO:0031048 "chromatin silencing by small RNA" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 110/238 (46%), Positives = 145/238 (60%)

Query:   140 GNSDREKVKKTLNLFREVVSVLMQEQEH--EHAGKSGTH-KILFKAAKLLKDEKRWINTP 196
             G+S R KVK+TL LF  V   ++QE E   E   + G   +I F+A+ +LK   +++N+ 
Sbjct:   266 GDSSRNKVKETLRLFHGVCRKILQEDEAKPEDQRRKGKGLRIDFEASTILKRNGKFLNSG 325

Query:   197 KR-LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGG 255
                LG +PGVEVGD+FQ+R E+ I+G+H+    GIDYM+ G   +ATSIV SG Y +   
Sbjct:   326 VHILGEVPGVEVGDEFQYRMELNILGIHKPSQAGIDYMKYGKAKVATSIVASGGYDDHLD 385

Query:   256 YCDHLLIYSGHGGNP-KVSKDAV----PEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLV 310
               D +L Y+G GGN  +V K       PEDQKLI GNLAL  S+E +TPVRVIRG     
Sbjct:   386 NSD-VLTYTGQGGNVMQVKKKGEELKEPEDQKLITGNLALATSIEKQTPVRVIRGKHKST 444

Query:   311 ASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEMREEQSK 367
                 K  N  YVYDGLY VE+YWQ  G  G  VFKF LR + GQ +    E+++ +SK
Sbjct:   445 HDKSKGGN--YVYDGLYLVEKYWQQVGSHGMNVFKFQLRRIPGQPELSWVEVKKSKSK 500

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0008327 "methyl-CpG binding" evidence=IDA

GO:0010428 "methyl-CpNpG binding" evidence=IDA

GO:0010429 "methyl-CpNpN binding" evidence=IDA

TAIR|locus:2171574 AT5G47160 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 97/237 (40%), Positives = 149/237 (62%)

Query:   118 HFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQEQEHEHAG-KSGTH 176
             H +++   ++ V++   +   L  + R+KV++ L +F  V   L + +     G ++   
Sbjct:   181 HKDERRSGVLSVIQRNRLSKDL--TPRQKVQEVLRIFTLVFDELDRNKAARRGGSETAKS 238

Query:   177 KILFKAAKLLKDEKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEG 236
             +I ++   +L++    +N+ KR+GS+PG++VGDK Q++  +++IGLH    +GIDYM +G
Sbjct:   239 RIDYQTWTILREMGMQVNSQKRIGSVPGIKVGDKIQFKAALSVIGLHFGIMSGIDYMYKG 298

Query:   237 GKLLATSIVESGRYTNDGG--YCDHLLIYSGHGGNPKVSKD--AVPEDQKLIQGNLALKN 292
              K +ATSIV S    ND G  + + ++IY G GGN + SKD  A+ +DQKL+ GNLAL N
Sbjct:   299 NKEVATSIVSSEG--NDYGDRFINDVMIYCGQGGNMR-SKDHKAI-KDQKLVGGNLALAN 354

Query:   293 SMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
             S++ KTPVRVIRG + L           YVYDGLY VE+YW+ RGP GN++FKF LR
Sbjct:   355 SIKEKTPVRVIRGERRL-----DNRGKDYVYDGLYRVEKYWEERGPQGNILFKFKLR 406

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042393 "histone binding" evidence=IEA

TAIR|locus:2151997 AT5G47150 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 92/223 (41%), Positives = 133/223 (59%)

Query:   139 LGNSD-----REKVKKTLNLFREVVSVLMQEQEHEHAGK--SGTHKILFKAAKLLKDEKR 191
             +GNSD     REKV + L+LF++V + L ++++    G     T +I  K   +L+   +
Sbjct:   108 IGNSDCDPTPREKVLEVLSLFKQVYNQLDRDKKARRGGDFLDATSRIDLKTLTVLEKMGK 167

Query:   192 WINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYT 251
              +NT KR+GS+PG+ +GD FQ++ E+ ++GLH +   GIDY++ G   + TSIV S  Y 
Sbjct:   168 QVNTEKRIGSVPGINIGDVFQYKTELRVVGLHSKPMCGIDYIKLGDDRITTSIVASEGYG 227

Query:   252 NDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVA 311
              +  Y   +++Y+G GGN  ++K    EDQKL++GNLAL  SM  K+ VRVIRG + L  
Sbjct:   228 YNDTYNSGVMVYTGEGGNV-INKQKKTEDQKLVKGNLALATSMRQKSQVRVIRGEERL-- 284

Query:   312 SVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
                 +    YVYDGLY VE YW  R   G  V+KF L R  GQ
Sbjct:   285 ---DRKGKRYVYDGLYMVEEYWVERDVRGKSVYKFKLCRIPGQ 324

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042393 "histone binding" evidence=IEA

TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 89/218 (40%), Positives = 120/218 (55%)

Query:   141 NSDREKVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLG 200
             N +RE V   L  F  +     Q ++ + A      +   K+           NT KR G
Sbjct:   152 NGNRELVLSVLMRFDALRRRFAQLEDAKEAVSGIIKRPDLKSGSTCMGRGVRTNTKKRPG 211

Query:   201 SIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKL----LATSIVESGRYTNDGGY 256
              +PGVE+GD F +RFEM ++GLH     GIDY+   G+     +ATSIV SG Y ND G 
Sbjct:   212 IVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVVKGETEEEPIATSIVSSGYYDNDEGN 271

Query:   257 CDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKK 316
              D +LIY+G GGN    KD    DQKL +GNLAL+ S+   + VRVIRG+K   AS    
Sbjct:   272 PD-VLIYTGQGGN--ADKDKQSSDQKLERGNLALEKSLRRDSAVRVIRGLKE--AS---H 323

Query:   317 NNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
             N  +Y+YDGLY ++  W  +G  G+  FK+ L+R+ GQ
Sbjct:   324 NAKIYIYDGLYEIKESWVEKGKSGHNTFKYKLVRAPGQ 361

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 105/282 (37%), Positives = 146/282 (51%)

Query:    82 PIKRDFPVGCGGNQKGFPR-KGDCPVRCKIQSLDNSFHFNDQNKPIIEVVKPL--EVYNG 138
             P K + P    G ++G  R KG   V+ K    +     N+ N  + +VVK    +  +G
Sbjct:    95 PTKTNGPSSSSGTKRGVGRPKGTTSVKKK----EKKTVANEPNLDV-QVVKKFSSDFDSG 149

Query:   139 LGNSDREKVKKTLNLFREVVSVLMQ-EQEHEHAGK-SGTHKILFKAAKLLKDEKRWINTP 196
             +  ++RE     L     V SVLM+ +       +   T     KAA  L       N  
Sbjct:   150 ISAAEREDGNAYL-----VSSVLMRFDAVRRRLSQVEFTKSATSKAAGTLMSNGVRTNMK 204

Query:   197 KRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM-EEGG---KLLATSIVESGRYTN 252
             KR+G++PG+EVGD F  R EM ++GLH Q   GIDY+  + G   + LATSIV SGRY  
Sbjct:   205 KRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYIISKAGSDEESLATSIVSSGRYEG 264

Query:   253 DGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVAS 312
             +    + L IYSG GGN   ++ A   DQKL +GNLAL+NS+     VRV+RG ++  AS
Sbjct:   265 EAQDPESL-IYSGQGGNADKNRQA--SDQKLERGNLALENSLRKGNGVRVVRGEED-AAS 320

Query:   313 VMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
                K   +Y+YDGLY +   W  +G  G   FK+ L+R  GQ
Sbjct:   321 ---KTGKIYIYDGLYSISESWVEKGKSGCNTFKYKLVRQPGQ 359

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0005694 "chromosome" evidence=IDA

TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 94/240 (39%), Positives = 131/240 (54%)

Query:   144 REKVKKTLNLFREVVSVLMQEQEHEHA-GKSGTHKILFKAAKLLKDEKRWINTPKRL-GS 201
             R+ +K+T   +  +   LM E    H  G+    +    AA +++D   W+N  K + G 
Sbjct:   149 RQVMKRTRMTYESLRIHLMAESMKNHVLGQGRRRRSDMAAAYIMRDRGLWLNYDKHIVGP 208

Query:   202 IPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM--EEG--GKLLATSIVESGRYTNDGGYC 257
             + GVEVGD F +R E+ ++GLH Q   GID +  E    G+ +ATSIV SG Y +D    
Sbjct:   209 VTGVEVGDIFFYRMELCVLGLHGQTQAGIDCLTAERSATGEPIATSIVVSGGYEDDEDTG 268

Query:   258 DHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKN 317
             D +L+Y+GHGG     K    ++Q+L+ GNL ++ SM     VRVIRGIK    S+  K 
Sbjct:   269 D-VLVYTGHGGQDHQHKQC--DNQRLVGGNLGMERSMHYGIEVRVIRGIK-YENSISSK- 323

Query:   318 NVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQKDYRLDEMREEQSKSMIKNKPLM 376
               VYVYDGLY +  +W A G  G  VFKF L+R  GQ       MR  Q+   ++NKP M
Sbjct:   324 --VYVYDGLYKIVDWWFAVGKSGFGVFKFRLVRIEGQPMMGSAVMRFAQT---LRNKPSM 378

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=IMP;TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0016571 "histone methylation" evidence=RCA;IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2140827 SUVH9 "SU(VAR)3-9 homolog 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 5.6e-27, P = 5.6e-27
 Identities = 83/223 (37%), Positives = 129/223 (57%)

Query:   144 REKVKKTLNLFREV-VSVLMQEQEHEHAG--KSGTHKILFKAAKLLKDEKRWINTPKRL- 199
             RE V+KT  ++  + + ++M+E +    G  ++       KA  +++D   W+N  KR+ 
Sbjct:   145 REHVRKTRMIYDSLRMFLMMEEAKRNGVGGRRARADGKAGKAGSMMRDCMLWMNRDKRIV 204

Query:   200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM----EEGGKLLATSIVESGRYTNDGG 255
             GSIPGV+VGD F +RFE+ ++GLH    +GID++       G+ +ATS++ SG Y +D  
Sbjct:   205 GSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGGYEDDDD 264

Query:   256 YCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIK--NLVASV 313
               D +++Y+G GG  ++ + A  E Q+L  GNLA++ SM     VRVIRG+K  N V+S 
Sbjct:   265 QGD-VIMYTGQGGQDRLGRQA--EHQRLEGGNLAMERSMYYGIEVRVIRGLKYENEVSSR 321

Query:   314 MKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKD 355
                   VYVYDGL+ +   W   G  G  VFK+ L  + GQ +
Sbjct:   322 ------VYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAE 358

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0009294 "DNA mediated transformation" evidence=IMP

TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 85/225 (37%), Positives = 116/225 (51%)

Query:   146 KVKKTLNLFREVVSVLMQEQEHEHAGKSGTHKILFKAAKLLKDEKRWINTPKRLGSIPGV 205
             KV K L LF +   + +Q +      K  T  I  KA  +L   K        +G +PG+
Sbjct:   104 KVTKCLRLFNKQYLLCVQAKLSRPDLKGVTEMI--KAKAILYPRKI-------IGDLPGI 154

Query:   206 EVGDKFQWRFEMTIIGLHQQFNNGIDYME-------EGGKL-LATSIVESGRYTNDGGYC 257
             +VG +F  R EM  +G H  + NGIDYM           KL LA SIV SG+Y +D    
Sbjct:   155 DVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYEKEYSNYKLPLAVSIVMSGQYEDDLDNA 214

Query:   258 DHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKN 317
             D  + Y+G GG+         +DQ L +GNLALK+  E   PVRV RG  N  +S  K+ 
Sbjct:   215 D-TVTYTGQGGHNLTGNKRQIKDQLLERGNLALKHCCEYNVPVRVTRG-HNCKSSYTKR- 271

Query:   318 NVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEM 361
               VY YDGLY VE++W  +G  G  V+K+ L+ L GQ +   D++
Sbjct:   272 --VYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRLEGQPELTTDQV 314

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0010216 "maintenance of DNA methylation" evidence=IDA

GO:0016571 "histone methylation" evidence=RCA;IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

GO:0046974 "histone methyltransferase activity (H3-K9 specific)" evidence=IDA

GO:0008327 "methyl-CpG binding" evidence=IDA

GO:0010385 "double-stranded methylated DNA binding" evidence=IDA

GO:0010428 "methyl-CpNpG binding" evidence=IDA

GO:0010429 "methyl-CpNpN binding" evidence=IDA

GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2047266 SDG21 "SET domain group 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 71/165 (43%), Positives = 92/165 (55%)

Query:   194 NTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM--EEGGK--LLATSIVESGR 249
             N  +R+G IPGV+VGD F +  EM ++GLH+    GID +  +E G     ATS+V SG+
Sbjct:   304 NMTRRIGPIPGVQVGDIFYYWCEMCLVGLHRNTAGGIDSLLAKESGVDGPAATSVVTSGK 363

Query:   250 YTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNL 309
             Y N+    +  LIYSGHGG P         DQ L +GN AL+ S+  +  VRVIRG    
Sbjct:   364 YDNETEDLE-TLIYSGHGGKPC--------DQVLQRGNRALEASVRRRNEVRVIRG---- 410

Query:   310 VASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKF-LLRSLGQ 353
                 +  N  VY+YDGLY V   WQ  G  G   ++F LLR  GQ
Sbjct:   411 ---ELYNNEKVYIYDGLYLVSDCWQVTGKSGFKEYRFKLLRKPGQ 452

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS

GO:0042054 "histone methyltransferase activity" evidence=ISS

GO:0008361 "regulation of cell size" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014173001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (862 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam02182	154	pfam02182, YDG_SRA, YDG/SRA domain	4e-57
smart00466	155	smart00466, SRA, SET and RING finger associated do	2e-51

>gnl|CDD|216920 pfam02182, YDG_SRA, YDG/SRA domain

 Score =  183 bits (467), Expect = 4e-57
 Identities = 79/158 (50%), Positives = 99/158 (62%), Gaps = 5/158 (3%)

Query: 197 KRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGY 256
           KR+G +PGVEVGD F +R E+ ++GLH+    GID M+  G  +ATSIV SG Y +D   
Sbjct: 1   KRIGHVPGVEVGDIFFYRVELCVVGLHRPHQAGIDGMKSEGGTIATSIVSSGGYEDDEDN 60

Query: 257 CDHLLIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKK 316
            D +L+Y+G GGN  +S +   EDQKL +GNLAL NS     PVRVIRG K    S    
Sbjct: 61  GD-VLVYTGQGGND-LSGNKQSEDQKLERGNLALANSCRKGNPVRVIRGEKG--PSSHAP 116

Query: 317 NNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQ 353
              +Y YDGLY VE+YW+ +G  G  VFKF L R  GQ
Sbjct: 117 KGGIYRYDGLYRVEKYWREKGKSGFKVFKFKLVRIPGQ 154

The function of this domain is unknown, it contains a conserved motif YDG after which it has been named. Length = 154

>gnl|CDD|197742 smart00466, SRA, SET and RING finger associated domain

 Score =  169 bits (429), Expect = 2e-51
 Identities = 70/157 (44%), Positives = 89/157 (56%), Gaps = 11/157 (7%)

Query: 196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEG-GKLLATSIVESGRYTNDG 254
            +  G +PGVEVGD F +R E+ ++GLH+    GID +E   G+  ATS+V SG Y +D 
Sbjct: 2   KRIFGPVPGVEVGDIFFYRVELCLVGLHRPTQAGIDGLESDEGEPGATSVVSSGGYEDD- 60

Query: 255 GYCDHL--LIYSGHGGNPKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVAS 312
              D    LIY+G GG         PEDQKL +GNLAL+ S     PVRV+RG+K     
Sbjct: 61  --TDDGDVLIYTGQGGR--DMTHGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKY 116

Query: 313 VMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
              K    Y+YDGLY +  YW+  G  G LVFKF L 
Sbjct: 117 APGK---GYIYDGLYRIVDYWREVGKSGFLVFKFKLV 150

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
smart00466	155	SRA SET and RING finger associated domain. Domain	100.0
PF02182	155	SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This	100.0
COG3440	301	Predicted restriction endonuclease [Defense mechan	92.82

>smart00466 SRA SET and RING finger associated domain

Probab=100.00  E-value=4.1e-62  Score=437.56  Aligned_cols=152  Identities=47%  Similarity=0.769  Sum_probs=144.7

Q ss_pred             CCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeecc-CCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCC
Q 016310          196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEE-GGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSK  274 (391)
Q Consensus       196 ~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~-~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~  274 (391)
                      .|+||+||||+|||+|++|+||+++|||+++|+||||++. +|+++|+|||+||+|+||+|+|| +|+|||+||++.  +
T Consensus         2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd-~liYtG~gg~~~--~   78 (155)
T smart00466        2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGD-VLIYTGQGGRDM--T   78 (155)
T ss_pred             CceEeCCCCccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCC-EEEEEccCCccC--C
Confidence            5889999999999999999999999999999999999984 57788999999999999999999 999999999987  3


Q ss_pred             CCCccccccccccHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCC
Q 016310          275 DAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQ  353 (391)
Q Consensus       275 ~kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQ  353 (391)
                      ++|+.||+|++||+||++||++++|||||||+++.   +.++|.++|||||||+|++||.|+|++|+.||||+| |+|||
T Consensus        79 ~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~---~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ  155 (155)
T smart00466       79 HGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGY---SKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ  155 (155)
T ss_pred             CCCccccEecchhHHHHHHHhcCCceEEEcccccc---CCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence            58999999999999999999999999999999963   358999999999999999999999999999999999 99999

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.

>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain

Probab=100.00  E-value=1e-59  Score=421.11  Aligned_cols=153  Identities=52%  Similarity=0.797  Sum_probs=127.3

Q ss_pred             CCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCCC
Q 016310          196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKD  275 (391)
Q Consensus       196 ~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~~  275 (391)
                      +|+|||||||+|||||++|+||+++|||+++|+||||++.+|.++|+|||+||+|+||+|+|| +|||||+||++..+ .
T Consensus         1 ~k~~G~ipGv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g~~~A~SIV~Sg~y~dd~D~gd-~l~YtG~gg~~~~~-~   78 (155)
T PF02182_consen    1 EKRFGHIPGVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEGGPVAYSIVLSGGYEDDEDNGD-VLIYTGQGGNDLSG-N   78 (155)
T ss_dssp             -TSSS--TT--TT-EESSHHHHHHTTSS--SS-SEEEETTTESEEEEEEEESSSSTTCEECSS-EEEEE-SSSB--TT-T
T ss_pred             CCcEeCCCCccCccEEhHHHHHhHhccCCCccCCeecccCCCceeeEEEEECCCcccccCCCC-EEEEEcCCCccccc-c
Confidence            478999999999999999999999999999999999999999999999999999999999999 99999999999876 4


Q ss_pred             CCccccccccccHHHHhhhhcCCceEEEeccccCccccCcCCceE-EEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCC
Q 016310          276 AVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVV-YVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQ  353 (391)
Q Consensus       276 kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kg-YrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQ  353 (391)
                      +|.+||+|++||+||++|+++++|||||||++..+   .++|..+ |||||||+|++||.+++++|+.||||+| |+|||
T Consensus        79 ~~~~dQ~l~~gN~AL~~S~~~~~PVRViR~~~~~~---~~ap~~g~yrYDGLY~V~~~w~~~g~~G~~v~kF~L~R~~gQ  155 (155)
T PF02182_consen   79 KQPKDQKLERGNLALANSMKTGNPVRVIRGYKLKS---SYAPKGGIYRYDGLYKVVKYWREKGKSGFKVFKFKLVRLPGQ  155 (155)
T ss_dssp             -B-S---SSHHHHHHHHHSGGS-EEEEEEEGGGGG---TTS-SSS-EEEEEEEEEEEEEEEE-TTSSEEEEEEEEE-TSS
T ss_pred             cccccccccchhHHHHHHHhcCCCeEEEeecCCCC---ccCCcCCCEEeCcEEEEEEEEEEeCCCCcEEEEEEEEECCCC
Confidence            69999999999999999999999999999999865   3788888 9999999999999999999999999999 99999

Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=92.82  E-value=0.0011  Score=66.09  Aligned_cols=137  Identities=9%  Similarity=-0.158  Sum_probs=109.2

Q ss_pred             CCCCceech-HhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCCCCCcccccc
Q 016310          205 VEVGDKFQW-RFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAVPEDQKL  283 (391)
Q Consensus       205 V~VGD~F~~-R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~~kq~~DQkL  283 (391)
                      +..+..+-. +.+..-.+.|-|++.++.+....+   +.+++.+|.|+++.+.+. +..||+-|+....+  .+..=+.+
T Consensus        11 f~~~~a~~~i~~~~~~~a~~kp~l~l~v~~~~~~---~~~~~n~~~~~~e~~~~f-~~l~~~~g~~~~~~--~~~~p~~~   84 (301)
T COG3440          11 FSQRNASLKIFGGNREAAPHKPILLLDVGRKIST---FFITENQGIYETELIEPF-IQLWSFFGPKLQKY--GVDAPFEL   84 (301)
T ss_pred             hhhhhhhhhhcccccccCCcCceeehhhHhhhhc---ccccccccccchhccchH-HHHHhhcCcccccC--CCCCchHH
Confidence            333333433 555666788999999999987766   789999999999999999 99999999863221  23333456


Q ss_pred             ccccHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ec
Q 016310          284 IQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RS  350 (391)
Q Consensus       284 erGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-Rl  350 (391)
                      ..|+.++..+++.+-+-++||+....+   ...+-..+-|-|+|.+..-|.++.-.+.+++.|.. ++
T Consensus        85 l~~d~~~h~~~k~~~~~l~~~~~~~~~---e~v~~~~~d~el~~~~~~~~~~~~l~~~L~~~~~~~~~  149 (301)
T COG3440          85 LQGDGKWHLDIKEGFDGLSIRTLPTEK---EFVEYHYIDDELEQSLQYHQGEKRLIDDLISIWRKEVL  149 (301)
T ss_pred             hhccchhhhcccccCCccccCCCccHh---hhhhhhhccHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            789999999999999999999986543   34566788899999999999999999999999988 75

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	391
3q0c_X	167	Crystal Structure Of Suvh5 Sra-Fully Methylated Cg		1e-39
3q0b_X	167	Crystal Structure Of Suvh5 Sra- Fully Methylated Cg		1e-38
2pb7_A	239	Crystal Structure Of The Sra Domain Of The Human Uh		7e-11
3bi7_A	212	Crystal Structure Of The Sra Domain Of E3 Ubiquitin		8e-11
3clz_A	212	The Set And Ring Associated (Sra) Domain Of Uhrf1 B		1e-10
3dwh_A	208	Structural And Functional Analysis Of Sra Domain Le		1e-10
2zkd_A	210	Crystal Structure Of The Sra Domain Of Mouse Np95 I		1e-09
2zo0_B	212	Mouse Np95 Sra Domain Dna Specific Complex 1 Length		1e-09
3f8j_B	212	Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C		2e-09
3oln_A	231	Crystal Structure Of The Sra Domain Of E3 Ubiquitin		4e-07

>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna Complex In Space Group P6122 Length = 167

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 114/157 (72%), Gaps = 8/157 (5%)
Query: 199 LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM-EEGGKLLATSIVESGRYTNDGGYC 257
           +G++PGVEVGD+FQ+R E+ ++G+H+   +GIDYM ++GG+L+ATSIV SG Y ND    
Sbjct: 3   IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGY-NDVLDN 61
Query: 258 DHLLIYSGHGGN-PKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKN--LVASVM 314
             +LIY+G GGN  K   +  P+DQ+L+ GNLALKNS+  K PVRVIRGIKN  L +SV+
Sbjct: 62  SDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVV 121
Query: 315 KKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL 351
            KN   YVYDGLY VE YW+  G  G LVFKF LR +
Sbjct: 122 AKN---YVYDGLYLVEEYWEETGSHGKLVFKFKLRRI 155

>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna Complex In Space Group P42212 Length = 167

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/157 (55%), Positives = 113/157 (71%), Gaps = 8/157 (5%)
Query: 199 LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM-EEGGKLLATSIVESGRYTNDGGYC 257
           +G++PGVEVGD+FQ+R E+ ++G+H+   +GIDY  ++GG+L+ATSIV SG Y ND    
Sbjct: 3   IGTVPGVEVGDEFQYRXELNLLGIHRPSQSGIDYXKDDGGELVATSIVSSGGY-NDVLDN 61
Query: 258 DHLLIYSGHGGN-PKVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKN--LVASVM 314
             +LIY+G GGN  K   +  P+DQ+L+ GNLALKNS+  K PVRVIRGIKN  L +SV+
Sbjct: 62  SDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVV 121
Query: 315 KKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL 351
            KN   YVYDGLY VE YW+  G  G LVFKF LR +
Sbjct: 122 AKN---YVYDGLYLVEEYWEETGSHGKLVFKFKLRRI 155

>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1 Protein Length = 239

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G IPG+ VG  +++R +++  G+H+    GI      G   A S+V +G Y +D    DH
Sbjct: 15  GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDD---VDH 68
Query: 260 --LLIYSGHGGNPKVSKDAVPE---DQKLIQGNLAL----------KNSMEAKT-----P 299
                Y+G GG          E   DQKL   N AL          +   EAK      P
Sbjct: 69  GNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKP 128
Query: 300 VRVIR---GIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
           VRV+R   G KN   +  + N     YDG+Y V +YW  +G  G LV+++LLR
Sbjct: 129 VRVVRNVKGGKNSKYAPAEGNR----YDGIYKVVKYWPEKGKSGFLVWRYLLR 177

>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf1 Length = 212

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G IPG+ VG  +++R +++  G+H+    GI      G   A S+V +G Y +D    DH
Sbjct: 7   GPIPGIPVGTXWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDD---VDH 60
Query: 260 --LLIYSGHGGNPKVSKDAVPE---DQKLIQGNLAL----------KNSMEAKT-----P 299
                Y+G GG          E   DQKL   N AL          +   EAK      P
Sbjct: 61  GNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKP 120
Query: 300 VRVIR---GIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
           VRV+R   G KN   +  + N     YDG+Y V +YW  +G  G LV+++LLR
Sbjct: 121 VRVVRNVKGGKNSKYAPAEGNR----YDGIYKVVKYWPEKGKSGFLVWRYLLR 169

>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To Methylated Dna Length = 212

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G IPG+ VG  +++R +++  G+H+    GI      G   A S+V +G Y +D    DH
Sbjct: 7   GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDD---VDH 60
Query: 260 --LLIYSGHGGNPKVSKDAVPE---DQKLIQGNLAL----------KNSMEAKT-----P 299
                Y+G GG          E   DQKL   N AL          +   EAK      P
Sbjct: 61  GNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKP 120
Query: 300 VRVIR---GIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
           VRV+R   G KN   +  + N     YDG+Y V +YW  +G  G LV+++LLR
Sbjct: 121 VRVVRNVKGGKNSKYAPAEGNR----YDGIYKVVKYWPEKGKSGFLVWRYLLR 169

>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain Length = 208

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 33/173 (19%)
Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G IPG+ VG  +++R +++  G+H+    GI      G   A S+V +G Y +D    DH
Sbjct: 10  GPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDD---VDH 63
Query: 260 --LLIYSGHGGNPKVSKDAVPE---DQKLIQGNLAL----------KNSMEAKT-----P 299
                Y+G GG          E   DQKL   N AL          +   EAK      P
Sbjct: 64  GNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKP 123
Query: 300 VRVIR---GIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
           VRV+R   G KN   +  + N     YDG+Y V +YW  +G  G LV+++LLR
Sbjct: 124 VRVVRNVKGGKNSKYAPAEGNR----YDGIYKVVKYWPEKGKSGFLVWRYLLR 172

>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In Complex With Hemi-Methylated Cpg Dna Length = 210

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 36/175 (20%)
Query: 199 LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTND---GG 255
            G IPGV VG  +++R +++  G+H+    GI      G   A S+V +G Y +D   G 
Sbjct: 20  FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN 76
Query: 256 YCDHLLIYSGHGG-----NPKVSKDAVPEDQKLIQGNLAL---------KNSMEAKT--- 298
           Y      Y+G GG     N + +  +   DQKL   N AL         +   EA+    
Sbjct: 77  Y----FTYTGSGGRDLSGNKRTAGQS--SDQKLTNNNRALALNCHSPINEKGAEAEDWRQ 130
Query: 299 --PVRVIRGIKNLVAS--VMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
             PVRV+R +K    S     + N    YDG+Y V +YW  RG  G LV+++LLR
Sbjct: 131 GKPVRVVRNMKGGKHSKYAPAEGNR---YDGIYKVVKYWPERGKSGFLVWRYLLR 182

>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1 Length = 212

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 36/175 (20%)
Query: 199 LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTND---GG 255
            G IPGV VG  +++R +++  G+H+    GI      G   A S+V +G Y +D   G 
Sbjct: 7   FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN 63
Query: 256 YCDHLLIYSGHGG-----NPKVSKDAVPEDQKLIQGNLAL---------KNSMEAK---- 297
           Y      Y+G GG     N + +  +   DQKL   N AL         +   EA+    
Sbjct: 64  Y----FTYTGSGGRDLSGNKRTAGQS--SDQKLTNNNRALALNCHSPINEKGAEAEDWRQ 117
Query: 298 -TPVRVIRGIKNLVAS--VMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
             PVRV+R +K    S     + N    YDG+Y V +YW  RG  G LV+++LLR
Sbjct: 118 GKPVRVVRNMKGGKHSKYAPAEGNR---YDGIYKVVKYWPERGKSGFLVWRYLLR 169

>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg, Crystal Structure In Space Group C222(1) Length = 212

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 36/175 (20%)
Query: 199 LGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTND---GG 255
            G IPGV VG  +++R +++  G+H+    GI      G   A S+V +G Y +D   G 
Sbjct: 7   FGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN 63
Query: 256 YCDHLLIYSGHGG-----NPKVSKDAVPEDQKLIQGNLAL---------KNSMEAK---- 297
           Y      Y+G GG     N + +  +   DQKL   N AL         +   EA+    
Sbjct: 64  Y----FTYTGSGGRDLSGNKRTAGQS--SDQKLTNNNRALALNCHSPINEKGAEAEDWRQ 117
Query: 298 -TPVRVIRGIKNLVAS--VMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
             PVRV+R +K    S     + N    YDG+Y V +YW  RG  G LV+++LLR
Sbjct: 118 GKPVRVVRNMKGGKHSKYAPAEGNR---YDGIYKVVKYWPERGKSGFLVWRYLLR 169

>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 32/173 (18%)
Query: 200 GSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDH 259
           G IPG+ VG  +++R +++  G+H+    GI      G   A S+V +G + ++    D 
Sbjct: 31  GPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDG---AYSLVLAGGFADEVDRGDE 87
Query: 260 LLIYSGHG-----GNPKVSKDAVPEDQKLIQGNLAL---------------KNSMEAKTP 299
              Y+G G     GN ++   A   DQ L   N AL                 +  A  P
Sbjct: 88  -FTYTGSGGKNLAGNKRIG--APSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKP 144
Query: 300 VRVIRGIKNLVAS--VMKKNNVVYVYDGLYFVERYW-QARGPFGNLVFKFLLR 349
           VRVIR  K    S    ++ N    YDG+Y V +YW +     G LV+++LLR
Sbjct: 145 VRVIRSFKGRKISKYAPEEGN---RYDGIYKVVKYWPEISSSHGFLVWRYLLR 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
3q0b_X	167	Histone-lysine N-methyltransferase, H3 lysine-9 S	5e-42
3oln_A	231	E3 ubiquitin-protein ligase UHRF2; DNA-binding, me	2e-38
2pb7_A	239	E3 ubiquitin-protein ligase UHRF1; beta barrel, NE	2e-37
3fde_A	212	E3 ubiquitin-protein ligase UHRF1; SRA domain, bas	2e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Length = 167

 Score =  144 bits (364), Expect = 5e-42
 Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 5/168 (2%)

Query: 197 KRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYM-EEGGKLLATSIVESGRYTNDGG 255
           + +G++PGVEVGD+FQ+R E+ ++G+H+   +GIDYM ++GG+L+ATSIV SG Y +   
Sbjct: 1   QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLD 60

Query: 256 YCDHLLIYSGHGGNP-KVSKDAVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVM 314
             D +LIY+G GGN  K   +  P+DQ+L+ GNLALKNS+  K PVRVIRGIKN      
Sbjct: 61  NSD-VLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119

Query: 315 KKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYRLDEM 361
                 YVYDGLY VE YW+  G  G LVFKF LR + GQ +    E+
Sbjct: 120 VVAK-NYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQPELPWKEV 166

>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} Length = 231

 Score =  137 bits (345), Expect = 2e-38
 Identities = 50/194 (25%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 181 KAAKLLKDEKR-WINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKL 239
           +    +   +   I      G IPG+ VG  +++R +++  G+H+    GI      G  
Sbjct: 11  RGMACVGRTRECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDG-- 68

Query: 240 LATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSKDAV---PEDQKLIQGNLALK----- 291
            A S+V +G + ++    D    Y+G GG        +     DQ L   N AL      
Sbjct: 69  -AYSLVLAGGFADEVDRGD-EFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDA 126

Query: 292 ----------NSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQ-ARGPFG 340
                      +  A  PVRVIR  K    S          YDG+Y V +YW       G
Sbjct: 127 PLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEE-GNRYDGIYKVVKYWPEISSSHG 185

Query: 341 NLVFKFLLRSL-GQ 353
            LV+++LLR    +
Sbjct: 186 FLVWRYLLRRDDVE 199

>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Length = 239

 Score =  134 bits (339), Expect = 2e-37
 Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 24/200 (12%)

Query: 193 INTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTN 252
           I      G IPG+ VG  +++R +++  G+H+    GI      G   A S+V +G Y +
Sbjct: 8   IVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYED 64

Query: 253 DGGYCDHLLIYSGHGGNPKVSKDAVPE---DQKLIQGNLALK---------------NSM 294
           D  + +    Y+G GG          E   DQKL   N AL                   
Sbjct: 65  DVDHGN-FFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDW 123

Query: 295 EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQ 353
            +  PVRV+R +K    S          YDG+Y V +YW  +G  G LV+++LLR    +
Sbjct: 124 RSGKPVRVVRNVKGGKNSKYAPAE-GNRYDGIYKVVKYWPEKGKSGFLVWRYLLRRDDDE 182

Query: 354 KDYRLDEMREEQSKSMIKNK 373
                 E ++   K  +  +
Sbjct: 183 PGPWTKEGKDRIKKLGLTMQ 202

>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Length = 212

 Score =  125 bits (315), Expect = 2e-34
 Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 23/196 (11%)

Query: 196 PKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGG 255
               G IPGV VG  +++R +++  G+H+    GI      G   A S+V +G Y +D  
Sbjct: 4   ANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVD 60

Query: 256 YCDHLLIYSGHGGNPKVSKDAVPE---DQKLIQGNLALK--------------NSMEAKT 298
             +    Y+G GG              DQKL   N AL                      
Sbjct: 61  NGN-YFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGK 119

Query: 299 PVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLRSL-GQKDYR 357
           PVRV+R +K    S          YDG+Y V +YW  RG  G LV+++LLR    + +  
Sbjct: 120 PVRVVRNMKGGKHSKYAPAE-GNRYDGIYKVVKYWPERGKSGFLVWRYLLRRDDTEPEPW 178

Query: 358 LDEMREEQSKSMIKNK 373
             E ++   +  +  +
Sbjct: 179 TREGKDRTRQLGLTMQ 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 41/303 (13%), Positives = 84/303 (27%), Gaps = 85/303 (28%)

Query: 106 VRCKIQSLDNSFHFNDQNKPIIEVVKPLEVYNGLGNSDREKVKKTLNLFREVVSVLMQEQ 165
              +  S+     + +Q   +    +    YN      R +    L   R+    L++ +
Sbjct: 100 TEQRQPSMMTR-MYIEQRDRLYNDNQVFAKYN----VSRLQPYLKL---RQA---LLELR 148

Query: 166 EHE----H----AGKSGTHKILFKAAKLLKDEKR---------WINTPKRLGSIPGVEVG 208
             +         +GK+     +  A  +    K          W+N    L +    E  
Sbjct: 149 PAKNVLIDGVLGSGKT----WV--ALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETV 198

Query: 209 DKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGG 268
            +   +    I      + +  D+       + +   E  R      Y + LL+      
Sbjct: 199 LEMLQKLLYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----- 250

Query: 269 NPKVSKDAVPEDQKLIQGNLALKNSMEAKTPV--RVIRGIKNLVASVMKKNNVVYVYDGL 326
                   V ++ K      A   S   K  +  R  +    L A+     ++ +    L
Sbjct: 251 ------LNV-QNAKAWN---AFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 327 YFVERYWQARGPFGNLVFKFLLRSLGQKDYRLDEMREEQSK------SMI----KNKPLM 376
              E            V   LL+ L  +     ++  E         S+I    ++    
Sbjct: 299 TPDE------------VKSLLLKYLDCR---PQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 377 WER 379
           W+ 
Sbjct: 344 WDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	391
3q0b_X	167	Histone-lysine N-methyltransferase, H3 lysine-9 S	100.0
3oln_A	231	E3 ubiquitin-protein ligase UHRF2; DNA-binding, me	100.0
3fde_A	212	E3 ubiquitin-protein ligase UHRF1; SRA domain, bas	100.0
2pb7_A	239	E3 ubiquitin-protein ligase UHRF1; beta barrel, NE	100.0

>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*

Probab=100.00  E-value=7.3e-65  Score=458.51  Aligned_cols=162  Identities=51%  Similarity=0.897  Sum_probs=142.2

Q ss_pred             cccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccC-CceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCC-CCC
Q 016310          198 RLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEG-GKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKV-SKD  275 (391)
Q Consensus       198 riG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~-G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~-~~~  275 (391)
                      +|||||||+|||||++|+||+++|||+++|+||||++.+ |+++|+|||+||+|+||+|+|| +|+|||+||++.. +++
T Consensus         2 ~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~~~~gA~SIV~SggY~Dd~D~gd-~l~YTG~GG~~~~~~~~   80 (167)
T 3q0b_X            2 IIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSD-VLIYTGQGGNVGKKKNN   80 (167)
T ss_dssp             CCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSSSCEEEEEEEESSSTTCEECSSS-EEEEECSCTTCC-----
T ss_pred             cccCCCCCcCccEecchHHHhHhCcCCCccCCeecccccCCCcceEEEEeCCCcccccCCCC-EEEEECCCCCccccccc
Confidence            689999999999999999999999999999999999875 7889999999999999999999 9999999999886 567


Q ss_pred             CCccccccccccHHHHhhhhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeCCCCcEEEEEee-ecCCCC
Q 016310          276 AVPEDQKLIQGNLALKNSMEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLL-RSLGQK  354 (391)
Q Consensus       276 kq~~DQkLerGNlAL~~S~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekGk~G~~V~KFkL-RlpGQp  354 (391)
                      +|+.||+|++||+||++|+++++|||||||+++.. .+.++|.++|||||||+|++||.|+|++|+.||||+| |+||||
T Consensus        81 ~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~-~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~gQp  159 (167)
T 3q0b_X           81 EPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTT-LQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP  159 (167)
T ss_dssp             CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC-----------CCEEEEEEEEEEEEEEEECTTSCEEEEEEEEECTTSC
T ss_pred             cccccCccchhHHHHHHHHHcCCcEEEEEeecccc-cCCCCCCccEEECeEEEEeeeEEeeCCCCcEEEEEEEEEcCCCC
Confidence            89999999999999999999999999999998742 1357899999999999999999999999999999999 999999


Q ss_pred             CCchhhH
Q 016310          355 DYRLDEM  361 (391)
Q Consensus       355 ~l~~~~~  361 (391)
                      +|++++|
T Consensus       160 ~l~~~~~  166 (167)
T 3q0b_X          160 ELPWKEV  166 (167)
T ss_dssp             CCCC---
T ss_pred             CCChhhc
Confidence            9999986

>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12

Probab=100.00  E-value=1.2e-61  Score=455.44  Aligned_cols=168  Identities=31%  Similarity=0.454  Sum_probs=147.9

Q ss_pred             cccCCCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCC
Q 016310          191 RWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNP  270 (391)
Q Consensus       191 ~~~n~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d  270 (391)
                      +++++.++|||||||+|||||+||+||+++|||+++|+||||++.+|   |+|||+||||+||+|+|| +|+|||+||++
T Consensus        22 ~~~~p~~~~G~IPGV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~~G---A~SIVlSGgYeDD~D~Gd-~liYTGsGG~d   97 (231)
T 3oln_A           22 CTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDG---AYSLVLAGGFADEVDRGD-EFTYTGSGGKN   97 (231)
T ss_dssp             --CCCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTE---EEEEEESSCSSTTCBCSS-EEEEECCCC--
T ss_pred             EeecCCccCcCCCCCcCcCEEccHHHHhhhCCCCcccCCcccCCCCC---eEEEEecCCccccCCCCC-EEEEEcCCCcc
Confidence            46899999999999999999999999999999999999999999888   999999999999999999 99999999999


Q ss_pred             CCCCC---CCccccccccccHHHHhhh---------------hcCCceEEEeccccCccccCcCCceEEEEcceeeEEEE
Q 016310          271 KVSKD---AVPEDQKLIQGNLALKNSM---------------EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERY  332 (391)
Q Consensus       271 ~~~~~---kq~~DQkLerGNlAL~~S~---------------~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~  332 (391)
                      ..+++   .|++||+|++||+||++||               +.++|||||||+++.. .+.++|.++|||||||+|++|
T Consensus        98 ~~gnkrt~~q~~DQkl~~gNlAL~~Sc~~~~~~k~~~~~~~~~~g~PVRVIRg~k~~k-~s~yaP~~gyrYDGLY~V~~~  176 (231)
T 3oln_A           98 LAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRK-ISKYAPEEGNRYDGIYKVVKY  176 (231)
T ss_dssp             ---------CCSCCCSCHHHHHHHHHSSSCCCTTTCEECSSGGGSCCEEEEEEGGGTT-TCTTSCSSSEEEEEEEEEEEE
T ss_pred             CcCcccccccccccccccchHHHHhhhhccccccccchhhhhccCCceEEEeccccCc-CCCccCCCCeEeCeEEEEEEE
Confidence            87654   4899999999999999985               4579999999999753 357899999999999999999


Q ss_pred             EEeeCCC-CcEEEEEee-ecCCCCCCchhhHHH
Q 016310          333 WQARGPF-GNLVFKFLL-RSLGQKDYRLDEMRE  363 (391)
Q Consensus       333 W~ekGk~-G~~V~KFkL-RlpGQp~l~~~~~~~  363 (391)
                      |.|+|++ ||.||||+| |+||||++.+.+-++
T Consensus       177 W~e~g~s~G~~V~Kf~L~R~~gQP~~w~~~~~~  209 (231)
T 3oln_A          177 WPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIE  209 (231)
T ss_dssp             EEEECTTTCCEEEEEEEEECCSSCCTTSHHHHH
T ss_pred             EeccCCcCCeEEEEEEEEECCCCCCCcchhhhh
Confidence            9999999 999999999 999999777666443

>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*

Probab=100.00  E-value=1.4e-60  Score=444.16  Aligned_cols=161  Identities=32%  Similarity=0.528  Sum_probs=149.2

Q ss_pred             CCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCCCCCCC
Q 016310          195 TPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGNPKVSK  274 (391)
Q Consensus       195 ~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~d~~~~  274 (391)
                      +.++||+||||+|||||++|+||+++|+|+++|+||||++..|   |+|||+||||+||+|+|| +|+|||+||++..++
T Consensus         3 p~~~~G~iPGv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~~G---A~SIVlSGGY~DD~D~Gd-~l~YTGsGG~d~~gn   78 (212)
T 3fde_A            3 PANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN-YFTYTGSGGRDLSGN   78 (212)
T ss_dssp             CTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTE---EEEEEECSCSTTCEECSS-EEEEECSCCBCCTTT
T ss_pred             CcccccCCCCCcCccEecCHHHHhHhccCCCCcCCcccCCCcc---eEEEEeCCCcccCCCCCC-EEEEeccCCccCcCc
Confidence            5789999999999999999999999999999999999998888   999999999999999999 999999999998776


Q ss_pred             C---CCccccccccccHHHHhhh--------------hcCCceEEEeccccCccccCcCCceEEEEcceeeEEEEEEeeC
Q 016310          275 D---AVPEDQKLIQGNLALKNSM--------------EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARG  337 (391)
Q Consensus       275 ~---kq~~DQkLerGNlAL~~S~--------------~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~W~ekG  337 (391)
                      +   .|++||+|++||+||++||              ++++|||||||++... .+.++|.++|||||||+|++||.|+|
T Consensus        79 kr~~~q~~DQ~l~~gNlAL~~s~~~~~~~~~~~~~s~~~g~PVRVIRg~k~~k-~s~yaP~~gyrYDGLY~V~~~W~e~g  157 (212)
T 3fde_A           79 KRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGK-HSKYAPAEGNRYDGIYKVVKYWPERG  157 (212)
T ss_dssp             CSCCCBCSCCCSCHHHHHHHHTSSSCCCTTCEECSSGGGSCCEEEEEESCSST-TCSSSCSSSEEEEEEEEEEEEEEEEC
T ss_pred             cccCcccccccccccchHHHhhccccccccchhhhhhhcCCcEEEEcccCcCC-CCccCCCCCeEeCeEEEEEEEEEccC
Confidence            4   4899999999999999986              4799999999998753 35799999999999999999999999


Q ss_pred             CCCcEEEEEee-ecCCCCCCchhh
Q 016310          338 PFGNLVFKFLL-RSLGQKDYRLDE  360 (391)
Q Consensus       338 k~G~~V~KFkL-RlpGQp~l~~~~  360 (391)
                      ++|+.||||+| |+||||+..+.+
T Consensus       158 ~~G~~V~kf~L~R~~gqp~~w~~~  181 (212)
T 3fde_A          158 KSGFLVWRYLLRRDDTEPEPWTRE  181 (212)
T ss_dssp             TTSSEEEEEEEEECCSSCCTTSHH
T ss_pred             CCCcEEEEEEEEECCCCCCCcchh
Confidence            99999999999 999999755444

>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12

Probab=100.00  E-value=2.8e-60  Score=448.21  Aligned_cols=170  Identities=30%  Similarity=0.490  Sum_probs=149.8

Q ss_pred             cCcccCCCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCC
Q 016310          189 EKRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGG  268 (391)
Q Consensus       189 ~~~~~n~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG  268 (391)
                      +-+.+++.++|||||||+|||||+||+||+++|||+++|+||||++..|   |+|||+||||+||+|+|| +|+|||+||
T Consensus         4 ~~~~~~~~~~~G~iPGV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~~G---A~SIVlSGgYeDD~D~GD-~liYTGsGG   79 (239)
T 2pb7_A            4 KECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDHGN-FFTYTGSGG   79 (239)
T ss_dssp             -CCCSSCTTCCSCCTTCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTE---EEEEEESSCSTTCCBCSS-EEEEECCCC
T ss_pred             eEEEecCCCcccCCCCCcCCCEECCHHHHHHhCCccccccCcccCCCCC---EEEEEECCCccccccCCc-EEEEEccCC
Confidence            3467899999999999999999999999999999999999999998777   999999999999999999 999999999


Q ss_pred             CCCCCCC---CCccccccccccHHHHhhh---------------hcCCceEEEeccccCccccCcCCceEEEEcceeeEE
Q 016310          269 NPKVSKD---AVPEDQKLIQGNLALKNSM---------------EAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVE  330 (391)
Q Consensus       269 ~d~~~~~---kq~~DQkLerGNlAL~~S~---------------~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv  330 (391)
                      ++..+++   .|.+||+|++||+||++||               ++++|||||||+++.. .+.++|.++|||||||+|+
T Consensus        80 ~d~~gnkr~~~q~~DQ~L~~gNlAL~~sc~~~~~~k~~~~~~s~~~g~PVRVIRg~k~~k-~s~yaP~~GyrYDGLY~V~  158 (239)
T 2pb7_A           80 RDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGK-NSKYAPAEGNRYDGIYKVV  158 (239)
T ss_dssp             ----------CCCSCCCSCHHHHHHHHTSSSCCCTTTCEECTTGGGSCCEEEEEEGGGGG-TCTTSCSSSEEEEEEEEEE
T ss_pred             ccCcccccccccccccccccccHHHHhhhhcccccccchhhhhhccCCceEEEcccccCc-CCcccCCceEEeCCeEEEE
Confidence            9987654   4899999999999999974               5899999999998743 3578999999999999999


Q ss_pred             EEEEeeCCCCcEEEEEee-ecCCCCCCchhhHHH
Q 016310          331 RYWQARGPFGNLVFKFLL-RSLGQKDYRLDEMRE  363 (391)
Q Consensus       331 ~~W~ekGk~G~~V~KFkL-RlpGQp~l~~~~~~~  363 (391)
                      +||.++|++|+.||||+| |+||||++.+.+.+.
T Consensus       159 ~~w~e~gk~G~~V~kf~L~R~~gQP~~w~~~~~~  192 (239)
T 2pb7_A          159 KYWPEKGKSGFLVWRYLLRRDDDEPGPWTKEGKD  192 (239)
T ss_dssp             EEEEEECTTSSEEEEEEEEECCSSCCTTSHHHHH
T ss_pred             EEEEeecCCCcEEEEEEEEECCCCCCCccccccc
Confidence            999999999999999999 999999766655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	391
d2zkda1	209	b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase	6e-46

>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  154 bits (391), Expect = 6e-46
 Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 193 INTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTN 252
           I      G IPGV VG  +++R +++  G+H+    GI      G   A S+V +G Y +
Sbjct: 13  IVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYED 69

Query: 253 DGGYCDHLLIYSGHGGNPKVSKDAV---PEDQKLIQGNLALKNS--------------ME 295
           D    +    Y+G GG              DQKL   N AL  +                
Sbjct: 70  DVDNGN-YFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWR 128

Query: 296 AKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERYWQARGPFGNLVFKFLLR 349
              PVRV+R +K    S          YDG+Y V +YW  RG  G LV+++LLR
Sbjct: 129 QGKPVRVVRNMKGGKHSKYAPAE-GNRYDGIYKVVKYWPERGKSGFLVWRYLLR 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	391
d2zkda1	209	E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc	100.0

>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-62  Score=451.73  Aligned_cols=166  Identities=32%  Similarity=0.507  Sum_probs=153.8

Q ss_pred             CcccCCCCcccCCCCCCCCceechHhHHhhhhccCCCcCCeeeeccCCceeEEEEEecCCccCCCCCCccEEEEEcCCCC
Q 016310          190 KRWINTPKRLGSIPGVEVGDKFQWRFEMTIIGLHQQFNNGIDYMEEGGKLLATSIVESGRYTNDGGYCDHLLIYSGHGGN  269 (391)
Q Consensus       190 ~~~~n~~kriG~VPGV~VGD~F~~R~El~~vGLH~~~qaGIdg~~~~G~~~A~SIVlSGgYeDD~D~GD~~LiYTG~GG~  269 (391)
                      ..-+++.++|||||||+|||||+||+||+++|||+++|+||+|++.+|   |+|||+||||+||+|+|| +|||||+||+
T Consensus        10 ~~~~~p~~~~G~vpGv~VGd~F~~R~el~~~GlH~~~~aGI~g~~~~G---A~SIV~SGgYeDD~D~gd-~liYTG~GG~   85 (209)
T d2zkda1          10 ECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDG---AYSLVLAGGYEDDVDNGN-YFTYTGSGGR   85 (209)
T ss_dssp             CCCSSCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTE---EEEEEECSCSTTCEECSS-EEEEECSCCB
T ss_pred             eEEeCCCCcccCCCCCCCCCEECCHHHHHHcCCCCCccCcEeecCCCc---eEEEEECCCccccccCCc-EEEEECCCCc
Confidence            355789999999999999999999999999999999999999999888   999999999999999999 9999999999


Q ss_pred             CCCCCC---CCccccccccccHHHHhh--------------hhcCCceEEEeccccCccccCcCCceEEEEcceeeEEEE
Q 016310          270 PKVSKD---AVPEDQKLIQGNLALKNS--------------MEAKTPVRVIRGIKNLVASVMKKNNVVYVYDGLYFVERY  332 (391)
Q Consensus       270 d~~~~~---kq~~DQkLerGNlAL~~S--------------~~~~~PVRVIRG~k~~s~~~~~~p~kgYrYDGLY~Vv~~  332 (391)
                      +..+++   .|++||+|++||+||++|              |++++|||||||+++.. .+.++|.++|||||||+|++|
T Consensus        86 d~~~~k~~~~q~~DQkl~~gNlAL~~Sc~~~~n~~~~~~~~~~~g~PVRVIRg~k~~~-~~~~~p~~gYrYDGLY~V~~~  164 (209)
T d2zkda1          86 DLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGK-HSKYAPAEGNRYDGIYKVVKY  164 (209)
T ss_dssp             CCTTTCSCCCBCSCCCSSHHHHHHHHTSSSCCCTTCEECTTGGGSCCEEEEEEGGGGG-TCTTSCSSSEEEEEEEEEEEE
T ss_pred             cccCCccccccccceeeccchHHHhhccccccccccchhhhhhcCCceEEEEeecccc-CCCcCCCceEEeCcEEEEEEE
Confidence            987654   389999999999999999              67999999999998643 357899999999999999999


Q ss_pred             EEeeCCCCcEEEEEee-ecCCCCCCchhh
Q 016310          333 WQARGPFGNLVFKFLL-RSLGQKDYRLDE  360 (391)
Q Consensus       333 W~ekGk~G~~V~KFkL-RlpGQp~l~~~~  360 (391)
                      |.|+|++||.||||+| |+||||+..+.+
T Consensus       165 w~e~gk~G~~V~rF~L~R~~gQp~p~~~~  193 (209)
T d2zkda1         165 WPERGKSGFLVWRYLLRRDDTEPEPWTRE  193 (209)
T ss_dssp             EEEECTTSSEEEEEEEEECCSSCCTTSHH
T ss_pred             EEccCCCCcEEEEEEEEECCCCCCCcccC
Confidence            9999999999999999 999999965554