Citrus Sinensis ID: 016486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSAGPNASTDTN
Secondary Structure (PSIPRED)
cHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEcccccccccccEEEcccccEEEEEEccccccEEEEEccccccccccccEEEEEcccHHHHHHcccccccccccHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHcccEEEEcccHHHHHHHHHHHccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccccccccccccccccccEcccccccccccHHcccccccccccccccccccccccccccccccEEEEccccEEEEEEEcccccccccccEEEEccccEEEEEEEccccEEEHEcccHHHHHcccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHcEEEEEcccccccEEEccHHHHHHcccEEEEEcccHHHcHHHHHHHHHHHHHHcccHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAAAAATYHhlslssisqnpisksetqhfssprhsvsifkpifissslhkstnvvpikthdrrrftcsnslssipantsqyefsdgsAEIELRLQLGsleiqsskdifvdadgtcltvrvnrsgSFITLIETnqlfdkikptetiwyidedQLVINLkkqdpelkwpdiVESWESLTAGSMQLLKGTSIflvgdsteVNEKVALELAVglgytplsTKELLETFAKQTIDSwmlaegsdsvvngECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHvkdgklgysnADVVVKLQGWDADHAKSVAQASLSALKQLIQSdkklpgkksLYIRlgcrgdwpnikppgwdpsagpnastdtn
Flexible Loop (DISEMBL)
MAAAAatyhhlslssisqnpISKSETQHFSSPRHSVSIFKPIfissslhkstnvvpikthdrrrftcsnslssipantsQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRsgsfitlietnqlfdkiKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARrhvkdgklgysNADVVVKLQGWDADHAKSVAQASLSALKQLiqsdkklpgkKSLYIRLGCRgdwpnikppgwdpsagpnastdtn
Low Complexity Region (SEG)
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSAGPNASTDTN
Disordered region (IsUnstruct)
************************************SIFKPIFISSSLHKSTNVVPIKTHDRRRFTC*********************EIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS**********************LGYSNADVVVKLQGWDADHAKSVAQA*LSALKQLI********KKSLYIRLGCRGDWPNI******************
Disordered Region (DISOPRED)
********HHLSLSSISQN*****************SIFKPIF*********************F****************EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWE******MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSA********KDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS*****G**SLYIRLGCRGDWPNIKP****************
Disordered Region (DISEMBL)
************LSSISQN**************HSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTE**************VKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPS**********
Disordered Region (DISPRO)
M***AATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWD************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSAGPNASTDTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
O82290	387	Probable inactive shikima	yes	no	0.966	0.968	0.656	1e-133
Q5N4D3	190	Shikimate kinase OS=Synec	yes	no	0.260	0.531	0.336	5e-07
Q31PU5	190	Shikimate kinase OS=Synec	yes	no	0.260	0.531	0.336	5e-07
P72796	189	Shikimate kinase OS=Synec	N/A	no	0.260	0.534	0.317	1e-06
Q2JKT7	187	Shikimate kinase OS=Synec	yes	no	0.260	0.540	0.326	2e-06
Q2JRJ6	189	Shikimate kinase OS=Synec	yes	no	0.260	0.534	0.326	5e-06
Q3MFQ9	181	Shikimate kinase OS=Anaba	yes	no	0.262	0.563	0.323	5e-06
B7JZT6	187	Shikimate kinase OS=Cyano	yes	no	0.394	0.818	0.234	9e-06
Q8YXG9	181	Shikimate kinase OS=Nosto	yes	no	0.407	0.872	0.282	1e-05
Q5NTH3	307	Shikimate kinase 2, chlor	no	no	0.260	0.328	0.352	5e-05

>sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/387 (65%), Positives = 301/387 (77%), Gaps = 12/387 (3%)

Query: 3   AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
           AA A+   +  +S S NP++   T     +  SSPR   S F  +        S NV+P 
Sbjct: 2   AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIPD 60

Query: 58  KTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLT 117
           + +    F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L 
Sbjct: 61  RFNS---FSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLA 116

Query: 118 VRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLT 177
           V+  R+G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLT
Sbjct: 117 VKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLT 176

Query: 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG 237
           AG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG
Sbjct: 177 AGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEG 236

Query: 238 SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENS 297
            DSV   E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA DE S
Sbjct: 237 PDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEES 296

Query: 298 AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSL 357
           AKEEARR  ++ ++GYSNADVVVKLQGWD  HAKSVAQASLSALKQLI SDK LPGKKSL
Sbjct: 297 AKEEARRSKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSL 356

Query: 358 YIRLGCRGDWPNIKPPGWDPSA--GPN 382
           YIRLGCRGDWPNIKPPGWDPS+  GP+
Sbjct: 357 YIRLGCRGDWPNIKPPGWDPSSDTGPH 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G  +FLVG        +   LA  LGYT + T  L+E    ++I     ++G      
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VLE ++S+ R VVAT G   G   R + W +L  G  +WL
Sbjct: 67  IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=aroK PE=3 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G  +FLVG        +   LA  LGYT + T  L+E    ++I     ++G      
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VLE ++S+ R VVAT G   G   R + W +L  G  +WL
Sbjct: 67  IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aroK PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L+G ++FL+G        V   LA  LGY       L+E  A + I      +G D+  +
Sbjct: 10  LQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIERVAGKAIADIFAEDGEDTFRD 69

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E +VL  L++  R+V+AT G   G   R   W +L+ G  +WL
Sbjct: 70  LETEVLGHLAAQTRSVIATGG---GVVLRRQNWSYLHHGLVIWL 110

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=aroK PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L+G +++L+G        V  ELA  L +    T  L+E     +I       G     +
Sbjct: 10  LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQVGGSSIAQIFAEHGEAYFRD 69

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VL  LSS+ R V+AT G   G   R   W +L+ G TVWL
Sbjct: 70  LETQVLAQLSSYTRLVIATGG---GIVLRPKNWSYLHHGLTVWL 110

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK PE=3 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L+G +++L+G        +  ELA  L      T  L+E  A  +I      +G      
Sbjct: 10  LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGCSIAQIFAEQGEAHFRE 69

Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
            E  VL  LS + R VVAT G   G   R   W +L+ G TVWL
Sbjct: 70  LETQVLAQLSGYTRLVVATGG---GIVLRPKNWSYLHHGLTVWL 110

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroK PE=3 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           LL+G +++L+G        V   LA  LGY  L T  ++   AK++I+      G     
Sbjct: 4   LLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAKKSINEIFAEAGEAGFR 63

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             E DVL  + S+ +  VAT G   G   R + W +L+ G  VWL
Sbjct: 64  QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLIVWL 105

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD 239
           + +LL+G +I+L+G        +   LA  L Y    T  L+E   +Q+I+   + +G  
Sbjct: 3   TQKLLQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILIERVTQQSINDIFVTQGET 62

Query: 240 SVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAK 299
              + E  VL  +++  R+V+AT GG  G    +  W +L+ G  +WL  +  + +    
Sbjct: 63  VFRDIETQVLSEVAACTRSVIAT-GG--GIVLNSQNWSYLHHGLIIWLDVSIKLLKTRLI 119

Query: 300 EEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSAL 341
            +  R +         +D+ +KL+  D        +A L+ +
Sbjct: 120 NDTTRPL------LKESDLTLKLKTLDEQRRNLYNKADLTIV 155

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=aroK PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 19/177 (10%)

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           LL+G +++L+G        V   LA  LGY  L T  ++    K++I+      G     
Sbjct: 4   LLQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQATKKSINEIFAEAGEAGFR 63

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEAMDENSAKEE 301
             E DVL  + S+ +  VAT G   G   R + W +L+ G  +WL    + +    A + 
Sbjct: 64  QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLILWLDVPVDILYARLAADT 120

Query: 302 ARRHVKD----GKLG---------YSNADVVVKLQGWDADH--AKSVAQASLSALKQ 343
            R  ++D    GKL          YS AD+ + +   +     A  V QA  S LKQ
Sbjct: 121 TRPLLQDDDPKGKLRSLLEQRTPLYSQADLRICVNAEETPEQIANKVMQAIPSVLKQ 177

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SK2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
           L G  I+LVG        VA  LA  LGY+   + +L+E        + +  E S++   
Sbjct: 92  LNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFR 151

Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
           + E  VL  LSS  R VVAT G   GA  R   W+++  G +VWL
Sbjct: 152 DNESSVLRDLSSMRRLVVATGG---GAVIRPVNWKYMKKGLSVWL 193

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
224071393	384	shikimate kinase-like protein [Populus t	0.907	0.916	0.736	1e-148
225427143	371	PREDICTED: uncharacterized protein LOC10	0.932	0.975	0.685	1e-147
255555887	382	ATP binding protein, putative [Ricinus c	0.884	0.897	0.728	1e-146
449465896	384	PREDICTED: uncharacterized protein LOC10	0.865	0.875	0.732	1e-142
356497645	369	PREDICTED: uncharacterized protein LOC10	0.927	0.975	0.661	1e-137
357485087	377	Shikimate kinase-like protein [Medicago	0.922	0.949	0.659	1e-135
388504258	377	unknown [Medicago truncatula]	0.922	0.949	0.653	1e-134
388490874	376	unknown [Lotus japonicus]	0.804	0.829	0.731	1e-134
18403860	387	shikimate kinase like 2 [Arabidopsis tha	0.966	0.968	0.656	1e-131
297823343	388	hypothetical protein ARALYDRAFT_482510 [	0.958	0.958	0.634	1e-131

>gi|224071393|ref|XP_002303438.1| shikimate kinase-like protein [Populus trichocarpa] gi|222840870|gb|EEE78417.1| shikimate kinase-like protein [Populus trichocarpa]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/365 (73%), Positives = 304/365 (83%), Gaps = 13/365 (3%)

Query: 15  SISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVV-PIKTHDRRRFTCSNSLSS 73
           S+S  P S S+T   S    S+SI           KS N   P+  +   RF+C N +S+
Sbjct: 25  SLSNIPFSISKTNFTSVANFSLSI--------PASKSNNASSPLNRY--SRFSC-NCIST 73

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
              NT+ YEFSD S+E+ELRL L  L+IQSS+DIFVDADGT L V+V  SGS ITLIETN
Sbjct: 74  ATPNTN-YEFSDSSSEVELRLSLVGLDIQSSRDIFVDADGTSLVVQVQHSGSHITLIETN 132

Query: 134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVG 193
           ++F+KIKP ETIW+ID+DQLVIN+KKQDP+LKWPDIVESWESLTAGSMQLLKG SIFLVG
Sbjct: 133 KMFEKIKPAETIWFIDDDQLVINMKKQDPDLKWPDIVESWESLTAGSMQLLKGASIFLVG 192

Query: 194 DSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLS 253
           DSTE+N+KVA ELAVGLGYT L T+ELLETFAKQTIDSW+LAEGSDSV   EC +LESLS
Sbjct: 193 DSTEINQKVARELAVGLGYTLLDTQELLETFAKQTIDSWVLAEGSDSVAEAECAILESLS 252

Query: 254 SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGY 313
           SHVRAVV+TLGG+QGAA +A KWQHLYAGFTVWLSQTEA+DE+SAKEEAR++VKD  + Y
Sbjct: 253 SHVRAVVSTLGGKQGAAGKAYKWQHLYAGFTVWLSQTEALDEDSAKEEARKNVKDRSVAY 312

Query: 314 SNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPP 373
           SNADVVVKLQGWD+DHAKSVAQASLSALKQLI SDKKLPGKKSLYIRLGCRGDWPNIKPP
Sbjct: 313 SNADVVVKLQGWDSDHAKSVAQASLSALKQLILSDKKLPGKKSLYIRLGCRGDWPNIKPP 372

Query: 374 GWDPS 378
           GWDPS
Sbjct: 373 GWDPS 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427143|ref|XP_002277265.1| PREDICTED: uncharacterized protein LOC100266016 [Vitis vinifera] gi|297742063|emb|CBI33850.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/381 (68%), Positives = 308/381 (80%), Gaps = 19/381 (4%)

Query: 12  SLSSISQNPISKSETQH----FSSPRHSVSIFKPI-FISSSLHKSTNVVPIKTHDRRRFT 66
           SL   SQNP +  +  H     SSP+ ++++F P  FIS+             +  RR +
Sbjct: 4   SLFFFSQNPFTSPQISHPKISLSSPKPTLTLFTPPPFISN-------------NATRRLS 50

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  +LS+I  N S YEFSD S+E+ELRLQLG     SS+DIFVDA+ + L + V +SGSF
Sbjct: 51  C-KALSTISVNPSNYEFSDASSEMELRLQLGGGGTLSSRDIFVDAEDSSLKIGVKQSGSF 109

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           ITL+E N+L++KIK +ETIWYIDEDQLV+NLKKQDP+LKWPDIVESWESLTAG+MQLLKG
Sbjct: 110 ITLVEINKLYEKIKSSETIWYIDEDQLVVNLKKQDPDLKWPDIVESWESLTAGAMQLLKG 169

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI++VGDSTE+N+KVA ELAVGLGYTPL+TKELLETFAKQ+IDSW+ A+GS+SV   E 
Sbjct: 170 TSIYIVGDSTEINDKVARELAVGLGYTPLNTKELLETFAKQSIDSWVTADGSESVAEAES 229

Query: 247 DVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHV 306
            VLE+LSSHVRAV+ATLGG  GAA RADKW+HLYAGFTVWLSQ+E++DE SAKEEARRH+
Sbjct: 230 AVLENLSSHVRAVIATLGGLHGAARRADKWRHLYAGFTVWLSQSESIDEESAKEEARRHI 289

Query: 307 KDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGD 366
           ++G LGYSNADVVVKL GWDADHAK+VAQASLSALKQLI SDKKLPGKKSLYIRLGCRGD
Sbjct: 290 QEGSLGYSNADVVVKLHGWDADHAKTVAQASLSALKQLIMSDKKLPGKKSLYIRLGCRGD 349

Query: 367 WPNIKPPGWDPSAGPNASTDT 387
           WP+IKPPGWDPS G      T
Sbjct: 350 WPDIKPPGWDPSTGAEVPAGT 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555887|ref|XP_002518979.1| ATP binding protein, putative [Ricinus communis] gi|223541966|gb|EEF43512.1| ATP binding protein, putative [Ricinus communis]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/354 (72%), Positives = 296/354 (83%), Gaps = 11/354 (3%)

Query: 38  IFKPIFISSSLH-------KSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEI 90
           I KP+F S S         KS NV   K ++R   +C ++ ++    ++ YEFSDGS+E+
Sbjct: 32  ISKPVFTSISKFCLPISSFKSYNVSASKEYNRLSCSCFSTATT----STNYEFSDGSSEV 87

Query: 91  ELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE 150
           ELRL LGS + +S KDIFVDADGT L VRV RSGSF TLI+TN LFDKIKP ETIWYID+
Sbjct: 88  ELRLPLGSQDYESGKDIFVDADGTSLIVRVKRSGSFTTLIQTNYLFDKIKPAETIWYIDD 147

Query: 151 DQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210
           DQLVINLKKQDPELKWPDIVESWESLTAG+MQLLKGTSI++VGDSTE+N+KVA ELA GL
Sbjct: 148 DQLVINLKKQDPELKWPDIVESWESLTAGAMQLLKGTSIYIVGDSTEINQKVARELAGGL 207

Query: 211 GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAA 270
           GYTPL T+ELLET+ KQTIDSW+LAEGSDSV   E  +LESLSSHVRAV++TLG ++GAA
Sbjct: 208 GYTPLDTQELLETYTKQTIDSWVLAEGSDSVAEAESAILESLSSHVRAVISTLGRKKGAA 267

Query: 271 ARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHA 330
            R+D+W+HLYAGFTVWLSQTEA DE SAKEEARRHV+DG L YS ADVVVK+QGW+ DHA
Sbjct: 268 GRSDRWRHLYAGFTVWLSQTEATDEGSAKEEARRHVQDGSLAYSKADVVVKVQGWNDDHA 327

Query: 331 KSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSAGPNAS 384
           KSVAQASLSALKQLI  DKKLPGKKSLYIRLGCRGDWPNIKPPGW+PSA  +A+
Sbjct: 328 KSVAQASLSALKQLILPDKKLPGKKSLYIRLGCRGDWPNIKPPGWNPSAEGDAT 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465896|ref|XP_004150663.1| PREDICTED: uncharacterized protein LOC101203272 [Cucumis sativus] gi|449517683|ref|XP_004165874.1| PREDICTED: uncharacterized LOC101203272 [Cucumis sativus]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/336 (73%), Positives = 285/336 (84%)

Query: 44  ISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQS 103
           IS++L    ++ P  T    RFT + S S+ P  T  YEF+D S+E+ELRLQLG+ +I+S
Sbjct: 40  ISTALTSCFSLSPSNTRFSSRFTRNCSSSTAPVRTLDYEFTDSSSEVELRLQLGTQDIRS 99

Query: 104 SKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPE 163
           SKD++VDA+ T LT+RV R GS ITL+ET QLF+KIKP ETIWYIDEDQLVINLKK DP+
Sbjct: 100 SKDVYVDANDTSLTIRVQRPGSIITLLETKQLFEKIKPAETIWYIDEDQLVINLKKHDPD 159

Query: 164 LKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223
           LKWPDIVESWESLTAG  QLLKGTSIFL+GDST++N+KVA ELAVGLGYTPLSTKELLET
Sbjct: 160 LKWPDIVESWESLTAGFAQLLKGTSIFLIGDSTDINQKVAHELAVGLGYTPLSTKELLET 219

Query: 224 FAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGF 283
            +KQTIDSWMLAEGSD+V   E  V+ESLSSHVRAVVATLGG+ GAA R D W+HLYAGF
Sbjct: 220 LSKQTIDSWMLAEGSDAVAQVENTVIESLSSHVRAVVATLGGRLGAAGRTDTWRHLYAGF 279

Query: 284 TVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQ 343
           TVWLSQTEA DE++AKEEA+RH++D +L YSNA+VVVKLQGWD  H+K VAQA+LSALKQ
Sbjct: 280 TVWLSQTEATDESAAKEEAKRHMQDSQLAYSNAEVVVKLQGWDDAHSKVVAQAALSALKQ 339

Query: 344 LIQSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSA 379
           LI SDK LP KKSLYIRLGCRGDWPNIKPPGWDP++
Sbjct: 340 LILSDKSLPDKKSLYIRLGCRGDWPNIKPPGWDPAS 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497645|ref|XP_003517670.1| PREDICTED: uncharacterized protein LOC100816906 [Glycine max]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/375 (66%), Positives = 296/375 (78%), Gaps = 15/375 (4%)

Query: 13  LSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLS 72
           L  +S NP +++          + S+ KP  +S      +  +P K + R R  C  S S
Sbjct: 8   LCYLSTNPTTRN---------LNFSVLKPNVLS----LRSFSLPQKHYLRLR-PCKCS-S 52

Query: 73  SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIET 132
           + P +T+ YEFSDGS+E+ELRL +G L+++SS+DI VD + T L +RV R GS ITLIET
Sbjct: 53  TAPVSTTTYEFSDGSSEVELRLNIGGLDVRSSRDILVDTNDTSLAIRVLRPGSPITLIET 112

Query: 133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLV 192
           N LFD++K +ETIWYID+DQLV+N KKQDP+LKWPDI+ESWESLTAGS QLL+GTSI+LV
Sbjct: 113 NPLFDRVKSSETIWYIDDDQLVVNFKKQDPDLKWPDIMESWESLTAGSPQLLQGTSIYLV 172

Query: 193 GDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL 252
           GDSTE+N+KVA ELA GLGYTPLSTKELLE + KQT+DSW+LAEGSDSV   E  VLES+
Sbjct: 173 GDSTEINQKVAQELATGLGYTPLSTKELLELYTKQTVDSWLLAEGSDSVAEAESAVLESI 232

Query: 253 SSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLG 312
           SSH RAVVATLGGQ  AA RA KWQHLYAGFTVWLS+TEA+DE+SA+ E  ++VKDG + 
Sbjct: 233 SSHARAVVATLGGQHSAAGRAGKWQHLYAGFTVWLSKTEALDEDSARLETHKNVKDGIIS 292

Query: 313 YSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKP 372
           Y+NADVVVKLQGWD  +AKSVAQA LSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKP
Sbjct: 293 YTNADVVVKLQGWDPAYAKSVAQACLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKP 352

Query: 373 PGWDPSAGPNASTDT 387
           PGWDPS+  N +  T
Sbjct: 353 PGWDPSSEGNTTLGT 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485087|ref|XP_003612831.1| Shikimate kinase-like protein [Medicago truncatula] gi|355514166|gb|AES95789.1| Shikimate kinase-like protein [Medicago truncatula]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/367 (65%), Positives = 288/367 (78%), Gaps = 9/367 (2%)

Query: 13  LSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLS 72
           L  +  NP ++     FS       I KP F  +SL   ++        +   +      
Sbjct: 11  LRFLPPNPTTRKTFNFFS-------ILKPNF--NSLRSFSHSSLFSLSHKYPLSPCKCSF 61

Query: 73  SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIET 132
           + P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS ITLI+T
Sbjct: 62  TAPVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDT 121

Query: 133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLV 192
           N LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKGTSI+LV
Sbjct: 122 NPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLV 181

Query: 193 GDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL 252
           GDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAEGSDSV  GE  VLES+
Sbjct: 182 GDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEGTVLESI 241

Query: 253 SSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLG 312
           SSHVRA VATLGG+ GAA R+DKW+HLYAGFTVWLSQTEA DE+SA+EE  R+VKD    
Sbjct: 242 SSHVRAAVATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEASDEDSAREETHRNVKDRITA 301

Query: 313 YSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKP 372
           Y+NADVVVKLQGWD  +AKSVAQ  LSALKQLI SDKKLPGKKSLYIRLGCRGDWPNIKP
Sbjct: 302 YTNADVVVKLQGWDPAYAKSVAQGCLSALKQLILSDKKLPGKKSLYIRLGCRGDWPNIKP 361

Query: 373 PGWDPSA 379
           PGWDPS+
Sbjct: 362 PGWDPSS 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504258|gb|AFK40195.1| unknown [Medicago truncatula]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/367 (65%), Positives = 286/367 (77%), Gaps = 9/367 (2%)

Query: 13  LSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLS 72
           L  +  NP ++     FS       I KP F  +SL   ++        +   +      
Sbjct: 11  LRFLPPNPTTRKTFNFFS-------ILKPNF--NSLRSFSHSSLFSLSHKYPLSPCKCSF 61

Query: 73  SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIET 132
           + P +T+ YEFSD ++E+ELRL +GS++++S+KDI VDA+ T LT+RV +SGS ITLI+T
Sbjct: 62  TAPVSTTTYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDT 121

Query: 133 NQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLV 192
           N LFD+IKP+ETIWYID+D LV+N KK DPELKWPDI+ESWESL AGS QLLKGTSI+L 
Sbjct: 122 NPLFDRIKPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLA 181

Query: 193 GDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESL 252
           GDSTE+N+KVA ELA GLGYTPLSTKELLET++ QT+DSW+LAEGSDSV  GE  VLES+
Sbjct: 182 GDSTEINQKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEGTVLESI 241

Query: 253 SSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLG 312
           SSHVRA VATLGG+ GAA R+DKW+HLYAGFTVWLSQTEA DE+SA+EE  R+VKD    
Sbjct: 242 SSHVRAAVATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEASDEDSAREETHRNVKDRITA 301

Query: 313 YSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGDWPNIKP 372
           Y+NADVVVKLQGWD  +AKSVAQ  LS LKQLI SDKKLPGKKSLYIRLGCRGDWPNIKP
Sbjct: 302 YTNADVVVKLQGWDPAYAKSVAQGCLSTLKQLILSDKKLPGKKSLYIRLGCRGDWPNIKP 361

Query: 373 PGWDPSA 379
           PGWDPS+
Sbjct: 362 PGWDPSS 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490874|gb|AFK33503.1| unknown [Lotus japonicus]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/313 (73%), Positives = 270/313 (86%), Gaps = 1/313 (0%)

Query: 67  CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF 126
           C  S ++ P  T+ YEFSDGS+E+ELRL +G L+IQS++DI VDAD + L ++V RSGS 
Sbjct: 56  CKCSYTA-PVPTTTYEFSDGSSEMELRLNIGGLDIQSTRDISVDADDSSLAIKVLRSGSP 114

Query: 127 ITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKG 186
           +TLIETN LFD+IKP+ETIWYIDEDQLV+N KKQDP+LKWPDI+ESWESL AGS QLL+G
Sbjct: 115 LTLIETNPLFDRIKPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQLLQG 174

Query: 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC 246
           TSI+LVGDSTE+N+KVA ELA+GLGYTPL+TKELLE + KQT+DSW+LAEG DSV   E 
Sbjct: 175 TSIYLVGDSTEINQKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPDSVAEAES 234

Query: 247 DVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHV 306
            VLES+SS+ RAVVATLGG+QGA+ R+DKWQHL+AGFTVWLSQTEA DE+SA+EEA + V
Sbjct: 235 SVLESMSSYARAVVATLGGKQGASRRSDKWQHLHAGFTVWLSQTEATDEDSAREEAHKSV 294

Query: 307 KDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCRGD 366
           KD  + Y+NADVVVK QGWD  + KSVAQA L ALKQLI SDKKLPGKKSLYIRLGCRGD
Sbjct: 295 KDSTIAYTNADVVVKFQGWDPAYVKSVAQACLRALKQLILSDKKLPGKKSLYIRLGCRGD 354

Query: 367 WPNIKPPGWDPSA 379
           WPNI+PPGWDPS+
Sbjct: 355 WPNIEPPGWDPSS 367

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403860|ref|NP_565805.1| shikimate kinase like 2 [Arabidopsis thaliana] gi|75100603|sp|O82290.2|SKL2_ARATH RecName: Full=Probable inactive shikimate kinase like 2, chloroplastic; Short=AtSKL2; Flags: Precursor gi|15724242|gb|AAL06514.1|AF412061_1 At2g35500/T32F12.12 [Arabidopsis thaliana] gi|18377827|gb|AAL67100.1| At2g35500/T32F12.12 [Arabidopsis thaliana] gi|20197350|gb|AAC36171.2| expressed protein [Arabidopsis thaliana] gi|330254020|gb|AEC09114.1| shikimate kinase like 2 [Arabidopsis thaliana]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/387 (65%), Positives = 301/387 (77%), Gaps = 12/387 (3%)

Query: 3   AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
           AA A+   +  +S S NP++   T     +  SSPR   S F  +        S NV+P 
Sbjct: 2   AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIPD 60

Query: 58  KTHDRRRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLT 117
           + +    F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L 
Sbjct: 61  RFNS---FSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLA 116

Query: 118 VRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLT 177
           V+  R+G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLT
Sbjct: 117 VKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLT 176

Query: 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEG 237
           AG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG
Sbjct: 177 AGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEG 236

Query: 238 SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENS 297
            DSV   E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA DE S
Sbjct: 237 PDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEES 296

Query: 298 AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSL 357
           AKEEARR  ++ ++GYSNADVVVKLQGWD  HAKSVAQASLSALKQLI SDK LPGKKSL
Sbjct: 297 AKEEARRSKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSL 356

Query: 358 YIRLGCRGDWPNIKPPGWDPSA--GPN 382
           YIRLGCRGDWPNIKPPGWDPS+  GP+
Sbjct: 357 YIRLGCRGDWPNIKPPGWDPSSDTGPH 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823343|ref|XP_002879554.1| hypothetical protein ARALYDRAFT_482510 [Arabidopsis lyrata subsp. lyrata] gi|297325393|gb|EFH55813.1| hypothetical protein ARALYDRAFT_482510 [Arabidopsis lyrata subsp. lyrata]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/394 (63%), Positives = 295/394 (74%), Gaps = 22/394 (5%)

Query: 1   MAAAAATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTH 60
           MAA A+        S S NP++   T           +F PI I SS      +  ++  
Sbjct: 1   MAAFASGLASTIFYSPSLNPLTCQAT-----------LFSPIRIRSSPRVFRGLHSLRRR 49

Query: 61  DRRRFT-----------CSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFV 109
             RRF+             N LS++  +T  YEF+DG  E+ELRL+L + E  S KDI V
Sbjct: 50  GFRRFSQNVTTDRFKSFSCNCLSAVSTSTIDYEFTDGGKEVELRLRLKTGETLSPKDISV 109

Query: 110 DADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDI 169
           DADGT L V+  R+G  ITL+ETNQLF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDI
Sbjct: 110 DADGTSLAVKEKRNGLLITLLETNQLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDI 169

Query: 170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI 229
           VESWESLTAG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTI
Sbjct: 170 VESWESLTAGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTI 229

Query: 230 DSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQ 289
           DSW++AEG DSV   E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQ
Sbjct: 230 DSWIVAEGPDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQ 289

Query: 290 TEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDK 349
           TEA DE SAKEEARR+ ++ ++GYSNADVVVKLQGWD  HAKSVAQASLSALKQLI SDK
Sbjct: 290 TEATDEESAKEEARRNKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDK 349

Query: 350 KLPGKKSLYIRLGCRGDWPNIKPPGWDPSAGPNA 383
            LPGKKSLYIRLGCRGDWPNIKPPGWDPS+   A
Sbjct: 350 GLPGKKSLYIRLGCRGDWPNIKPPGWDPSSDTGA 383

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
TAIR|locus:2062486	387	SKL2 "shikimate kinase-like 2"	0.958	0.961	0.661	1.4e-126
UNIPROTKB|Q5NTH3	307	SK2 "Shikimate kinase 2, chlor	0.260	0.328	0.361	0.00018
TAIR|locus:2052586	304	SK1 "shikimate kinase 1" [Arab	0.260	0.332	0.314	0.00029

TAIR|locus:2062486 SKL2 "shikimate kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 252/381 (66%), Positives = 297/381 (77%)

Query:     5 AATYHHLSLSSISQNPISKSETQHFSSPRHSVSIFKPIFISSSLHKSTNVVPIKTHDR-R 63
             A  ++  SL+ ++      S  +  SSPR   S F  +        S NV+P    DR  
Sbjct:     9 AIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIP----DRFN 63

Query:    64 RFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS 123
              F+C N LS++  +T  YEF+DG  E+ELRL+L + EI S KDI VDADGT L V+  R+
Sbjct:    64 SFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRN 122

Query:   124 GSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQL 183
             G  ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESLTAG MQL
Sbjct:   123 GLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQL 182

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
             LKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAEG DSV  
Sbjct:   183 LKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAE 242

Query:   244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEAR 303
              E  VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA DE SAKEEAR
Sbjct:   243 AESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAKEEAR 302

Query:   304 RHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGC 363
             R  ++ ++GYSNADVVVKLQGWD  HAKSVAQASLSALKQLI SDK LPGKKSLYIRLGC
Sbjct:   303 RSKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSLYIRLGC 362

Query:   364 RGDWPNIKPPGWDPSA--GPN 382
             RGDWPNIKPPGWDPS+  GP+
Sbjct:   363 RGDWPNIKPPGWDPSSDTGPH 383

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA;TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q5NTH3 SK2 "Shikimate kinase 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 38/105 (36%), Positives = 52/105 (49%)

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
             L G  I+LVG        VA  LA  LGY+   + +L+E        + +  E S++   
Sbjct:    92 LNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFR 151

Query:   243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             + E  VL  LSS  R VVAT GG  GA  R   W+++  G +VWL
Sbjct:   152 DNESSVLRDLSSMRRLVVAT-GG--GAVIRPVNWKYMKKGLSVWL 193

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

TAIR|locus:2052586 SK1 "shikimate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 33/105 (31%), Positives = 51/105 (48%)

Query:   184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
             L G S++LVG        V   ++  LGYT      L+E     T  + +     ++   
Sbjct:   101 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFR 160

Query:   244 G-ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             G E D L+ LSS  + VV+T GG  GA  R   W++++ G ++WL
Sbjct:   161 GKETDALKKLSSRYQVVVST-GG--GAVIRPINWKYMHKGISIWL 202


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      388       388   0.00093  117 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  258 KB (2137 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.57u 0.14s 33.71t   Elapsed:  00:00:02
  Total cpu time:  33.57u 0.14s 33.71t   Elapsed:  00:00:02
  Start:  Sat May 11 10:21:10 2013   End:  Sat May 11 10:21:12 2013

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;TAS

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82290	SKL2_ARATH	No assigned EC number	0.6563	0.9664	0.9689	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
cd06467	85	cd06467, p23_NUDC_like, p23_like domain of NUD (nu	3e-10
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	5e-09
PLN02199	303	PLN02199, PLN02199, shikimate kinase	1e-05
PRK00131	175	PRK00131, aroK, shikimate kinase; Reviewed	0.001
cd00464	154	cd00464, SK, Shikimate kinase (SK) is the fifth en	0.004

>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear distribution) C and similar proteins

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 81  YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIK 140
           Y ++    E+ + + L   E   SKD+ V+     L V V        L++  +L+ K+K
Sbjct: 1   YSWTQTLDEVTVTIPLP--EGTKSKDVKVEITPKHLKVGVKGG---EPLLDG-ELYAKVK 54

Query: 141 PTETIWYI-DEDQLVINLKKQDPELKWPDIV 170
             E+ W + D   L I L+K++    WP +V
Sbjct: 55  VDESTWTLEDGKLLEITLEKRNEGEWWPSLV 85

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart. Length = 85

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 104 SKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPE 163
            KD+ V+     LTV V   G    L+E   LF  I P E+ W +++ ++ I LKK++P 
Sbjct: 19  KKDVKVEFTPKSLTVSVKGGGGKEYLLEGE-LFGPIDPEESKWTVEDRKIEITLKKKEPG 77

Query: 164 LKWPDIV 170
             WP + 
Sbjct: 78  EWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%)

Query: 142 TETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEK 201
           T +++  DED L    K++  E+K                  L G S++LVG        
Sbjct: 78  TGSVYPFDEDIL----KRKAEEVK----------------PYLNGRSMYLVGMMGSGKTT 117

Query: 202 VALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG-ECDVLESLSSHVRAVV 260
           V   ++  LGYT      L+E     T  + +     ++   G E D L+ LSS  + VV
Sbjct: 118 VGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVV 177

Query: 261 ATLGGQQGAAARADKWQHLYAGFTVWL 287
           +T GG   A  R   W++++ G ++WL
Sbjct: 178 STGGG---AVIRPINWKYMHKGISIWL 201

Length = 303

>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 184 LKGTSIFLV-----GDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLA-EG 237
           LKG +I L+     G ST     +   LA  LGY  + T  L+E  A ++I   +   EG
Sbjct: 2   LKGPNIVLIGFMGAGKST-----IGRLLAKRLGYDFIDTDHLIEARAGKSI-PEIFEEEG 55

Query: 238 SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWL 287
             +    E +VL  L +    V++T GG  GA  R +    L   G  V+L
Sbjct: 56  EAAFRELEEEVLAELLARHNLVIST-GG--GAVLREENRALLRERGTVVYL 103

Length = 175

>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 188 SIFLVG-----DSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAE-GSDSV 241
           +I L+G      +T     V   LA  LG   +   EL+E  A  +I   + AE G +  
Sbjct: 1   NIVLIGMMGAGKTT-----VGRLLAKALGLPFVDLDELIEQRAGMSI-PEIFAEEGEEGF 54

Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARAD-KWQHLYAGFTVWL 287
              E +VL  L +   AV+AT GG  GA  R + +   L  G  VWL
Sbjct: 55  RELEREVLLLLLTKENAVIAT-GG--GAVLREENRRLLLENGIVVWL 98

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	100.0
PLN02199	303	shikimate kinase	100.0
PRK13948	182	shikimate kinase; Provisional	100.0
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.97
PRK13949	169	shikimate kinase; Provisional	99.96
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.96
PRK05057	172	aroK shikimate kinase I; Reviewed	99.96
PRK13946	184	shikimate kinase; Provisional	99.96
PRK00625	173	shikimate kinase; Provisional	99.96
PRK13947	171	shikimate kinase; Provisional	99.94
PRK00131	175	aroK shikimate kinase; Reviewed	99.93
PRK03731	171	aroL shikimate kinase II; Reviewed	99.92
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.91
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.91
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.89
PRK09169	2316	hypothetical protein; Validated	99.88
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.65
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.64
PRK03839	180	putative kinase; Provisional	99.64
PRK05541	176	adenylylsulfate kinase; Provisional	99.63
PRK04182	180	cytidylate kinase; Provisional	99.62
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.62
PRK14532	188	adenylate kinase; Provisional	99.56
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.53
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.52
PRK13975	196	thymidylate kinase; Provisional	99.49
PRK14530	215	adenylate kinase; Provisional	99.45
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.42
PRK03846	198	adenylylsulfate kinase; Provisional	99.4
PRK00889	175	adenylylsulfate kinase; Provisional	99.38
PRK06762	166	hypothetical protein; Provisional	99.33
PRK06217	183	hypothetical protein; Validated	99.32
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.32
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.3
PRK01184	184	hypothetical protein; Provisional	99.29
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.25
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.23
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.22
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.21
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.21
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.21
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.18
PRK13808	333	adenylate kinase; Provisional	99.17
PRK02496	184	adk adenylate kinase; Provisional	99.17
PLN02674	244	adenylate kinase	99.16
PRK14531	183	adenylate kinase; Provisional	99.13
PRK06547	172	hypothetical protein; Provisional	99.13
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.12
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.1
PRK00279	215	adk adenylate kinase; Reviewed	99.08
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.08
PRK08233	182	hypothetical protein; Provisional	99.08
PRK09825	176	idnK D-gluconate kinase; Provisional	99.02
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.01
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.01
PRK11545	163	gntK gluconate kinase 1; Provisional	99.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.99
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.97
PRK08356	195	hypothetical protein; Provisional	98.97
PRK14527	191	adenylate kinase; Provisional	98.96
PLN02200	234	adenylate kinase family protein	98.96
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.95
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.93
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.93
PHA02530	300	pseT polynucleotide kinase; Provisional	98.92
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.92
PRK08118	167	topology modulation protein; Reviewed	98.92
PRK00023	225	cmk cytidylate kinase; Provisional	98.92
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.9
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.9
PRK14528	186	adenylate kinase; Provisional	98.89
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.89
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.89
PRK14526	211	adenylate kinase; Provisional	98.89
PTZ00088	229	adenylate kinase 1; Provisional	98.89
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.87
PRK04040	188	adenylate kinase; Provisional	98.83
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.81
PLN02422	232	dephospho-CoA kinase	98.8
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.78
PLN02165	334	adenylate isopentenyltransferase	98.78
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.78
PLN02459	261	probable adenylate kinase	98.77
PRK13973	213	thymidylate kinase; Provisional	98.75
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.74
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.73
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.72
PRK05480	209	uridine/cytidine kinase; Provisional	98.7
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.67
PRK14529	223	adenylate kinase; Provisional	98.64
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.64
PRK07261	171	topology modulation protein; Provisional	98.62
PTZ00451	244	dephospho-CoA kinase; Provisional	98.61
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.59
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.57
PLN02842	505	nucleotide kinase	98.55
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.55
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.53
PRK00698	205	tmk thymidylate kinase; Validated	98.53
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.48
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.48
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.48
PRK13974	212	thymidylate kinase; Provisional	98.46
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.45
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.42
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.42
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.4
PRK00300	205	gmk guanylate kinase; Provisional	98.4
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.39
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.37
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.36
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.33
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.33
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	98.31
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.3
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.29
PRK13976	209	thymidylate kinase; Provisional	98.28
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.26
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.24
PRK14737	186	gmk guanylate kinase; Provisional	98.24
PRK14738	206	gmk guanylate kinase; Provisional	98.23
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.19
PLN02924	220	thymidylate kinase	98.18
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.18
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.16
PRK06696	223	uridine kinase; Validated	98.15
PRK12338	319	hypothetical protein; Provisional	98.15
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	98.13
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	98.11
PRK07667	193	uridine kinase; Provisional	98.09
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.07
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.07
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	98.05
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.0
PRK06761	282	hypothetical protein; Provisional	97.99
COG0645	170	Predicted kinase [General function prediction only	97.99
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.97
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.92
PTZ00301	210	uridine kinase; Provisional	97.92
PLN02840	421	tRNA dimethylallyltransferase	97.87
PLN02348	395	phosphoribulokinase	97.86
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.86
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.84
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.83
PRK07429	327	phosphoribulokinase; Provisional	97.82
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.8
PRK07933	213	thymidylate kinase; Validated	97.8
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.79
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.78
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.77
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.77
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.77
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	97.76
PLN02748	468	tRNA dimethylallyltransferase	97.75
PF00004	132	AAA: ATPase family associated with various cellula	97.75
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.74
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.71
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.69
PRK09087	226	hypothetical protein; Validated	97.66
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	97.66
cd06463	84	p23_like Proteins containing this p23_like domain	97.66
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.65
PRK15453	290	phosphoribulokinase; Provisional	97.65
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	97.64
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	97.59
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.54
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.54
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.53
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.53
PLN02772	398	guanylate kinase	97.53
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.49
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.48
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	97.47
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.41
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.41
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	97.37
COG4639	168	Predicted kinase [General function prediction only	97.34
smart00382	148	AAA ATPases associated with a variety of cellular	97.32
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.29
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.28
PRK05439	311	pantothenate kinase; Provisional	97.28
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.27
COG1660	286	Predicted P-loop-containing kinase [General functi	97.27
PRK06620	214	hypothetical protein; Validated	97.24
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.24
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.21
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.15
PRK06893	229	DNA replication initiation factor; Validated	97.1
PHA00729	226	NTP-binding motif containing protein	97.08
PRK08084	235	DNA replication initiation factor; Provisional	97.07
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.04
PF13173	128	AAA_14: AAA domain	97.03
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.02
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.01
PLN02318	656	phosphoribulokinase/uridine kinase	97.0
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.99
COG3709	192	Uncharacterized component of phosphonate metabolis	96.98
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.94
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.92
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.91
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	96.9
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.88
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	96.88
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.85
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.83
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.82
PHA02244	383	ATPase-like protein	96.8
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.79
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.79
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.77
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.72
CHL00181	287	cbbX CbbX; Provisional	96.67
PRK10416	318	signal recognition particle-docking protein FtsY;	96.66
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.65
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.64
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.6
PRK10646	153	ADP-binding protein; Provisional	96.58
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.58
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.53
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.52
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.51
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.51
CHL00195	489	ycf46 Ycf46; Provisional	96.51
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.49
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.47
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.44
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.43
cd02034	116	CooC The accessory protein CooC, which contains a	96.41
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.4
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.39
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.37
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.35
PRK04195	482	replication factor C large subunit; Provisional	96.33
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.32
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.32
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.31
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.3
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.28
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.28
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.28
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.27
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	96.26
CHL00176	638	ftsH cell division protein; Validated	96.25
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	96.24
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.23
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.23
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.23
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.23
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.21
PF07726	131	AAA_3: ATPase family associated with various cellu	96.19
COG0714	329	MoxR-like ATPases [General function prediction onl	96.18
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	96.14
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.12
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.12
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	96.12
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.09
PRK13342	413	recombination factor protein RarA; Reviewed	96.06
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	96.06
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.04
CHL00095	821	clpC Clp protease ATP binding subunit	96.04
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	96.01
COG0802	149	Predicted ATPase or kinase [General function predi	96.01
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.0
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.0
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.96
PRK06526	254	transposase; Provisional	95.96
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	95.96
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.95
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.94
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.93
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.93
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.91
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.9
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	95.88
PF05729	166	NACHT: NACHT domain	95.87
PRK09183	259	transposase/IS protein; Provisional	95.86
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	95.82
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	95.79
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.78
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.78
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.76
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.74
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	95.73
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.7
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.69
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	95.68
PRK00771	437	signal recognition particle protein Srp54; Provisi	95.65
KOG0736	953	consensus Peroxisome assembly factor 2 containing	95.59
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.58
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	95.56
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.56
PRK05642	234	DNA replication initiation factor; Validated	95.53
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.52
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.51
TIGR00959	428	ffh signal recognition particle protein. This mode	95.5
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.5
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.5
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.5
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.49
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.48
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.46
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.46
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.45
CHL00206	2281	ycf2 Ycf2; Provisional	95.44
PRK13695	174	putative NTPase; Provisional	95.44
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.44
PRK08727	233	hypothetical protein; Validated	95.42
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.41
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.41
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.41
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	95.41
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.4
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.39
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.39
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.39
PRK14086	617	dnaA chromosomal replication initiation protein; P	95.38
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.37
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	95.35
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.34
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.34
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.34
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.33
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.33
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.33
PRK14974	336	cell division protein FtsY; Provisional	95.33
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.32
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	95.31
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	95.31
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.3
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.3
PHA02544	316	44 clamp loader, small subunit; Provisional	95.29
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.29
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.28
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	95.27
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.26
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	95.26
PRK08181	269	transposase; Validated	95.26
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.26
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.26
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.25
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	95.24
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.23
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.22
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.21
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.2
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.19
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	95.19
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.19
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.18
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.17
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.17
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	95.17
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.16
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	95.16
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.14
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.14
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	95.14
cd03112	158	CobW_like The function of this protein family is u	95.14
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.14
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.12
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.12
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.11
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	95.09
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	95.09
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	95.07
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.07
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	95.07
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.06
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.06
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.04
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.03
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	95.02
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	95.01
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	95.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	95.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	94.99
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	94.97
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	94.96
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	94.95
PRK10867	433	signal recognition particle protein; Provisional	94.95
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	94.95
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	94.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.94
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.94
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	94.94
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	94.92
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	94.92
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	94.91
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	94.91
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	94.91
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	94.91
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	94.91
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	94.9
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	94.9
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	94.89
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.89
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	94.88
PRK10908	222	cell division protein FtsE; Provisional	94.88
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.88
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	94.87
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	94.87
cd03234	226	ABCG_White The White subfamily represents ABC tran	94.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	94.87
cd03215	182	ABC_Carb_Monos_II This family represents domain II	94.86
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.86
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	94.84
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	94.83
cd03246	173	ABCC_Protease_Secretion This family represents the	94.83
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	94.82
KOG1969	877	consensus DNA replication checkpoint protein CHL12	94.82
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	94.81
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.81
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	94.81
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	94.8
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.8
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	94.8
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	94.79
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	94.78
PRK12377	248	putative replication protein; Provisional	94.77
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	94.77
KOG2028	554	consensus ATPase related to the helicase subunit o	94.76
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.76
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.76
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	94.75
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	94.74
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	94.74
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	94.74
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.74
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.74
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	94.74
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.74
PRK04296	190	thymidine kinase; Provisional	94.72
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.72
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	94.72
PRK12402	337	replication factor C small subunit 2; Reviewed	94.72
COG1341	398	Predicted GTPase or GTP-binding protein [General f	94.71
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.7
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	94.7
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.69
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	94.69
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.69
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	94.69
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	94.69
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.68
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	94.68
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	94.67
PRK13341	725	recombination factor protein RarA/unknown domain f	94.66
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	94.65
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	94.65
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	94.65
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.65
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	94.65
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	94.64
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.64
PRK10865	857	protein disaggregation chaperone; Provisional	94.63
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	94.63
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	94.62
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	94.62
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	94.61
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.6
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	94.59
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	94.59
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.59
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	94.59
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	94.57
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	94.57
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	94.56
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	94.55
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	94.55
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	94.55
PRK15455	644	PrkA family serine protein kinase; Provisional	94.54
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	94.54
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	94.54
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.53
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	94.53
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	94.52
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	94.52
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	94.51
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	94.51
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.51
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	94.5
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	94.5
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	94.49
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	94.49
PLN03025	319	replication factor C subunit; Provisional	94.49
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.49
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	94.48
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	94.47
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.47
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	94.45
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	94.45
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	94.44
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	94.44
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	94.44
PLN02796	347	D-glycerate 3-kinase	94.44
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	94.43
COG1484	254	DnaC DNA replication protein [DNA replication, rec	94.43
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	94.43

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=277.64  Aligned_cols=153  Identities=24%  Similarity=0.309  Sum_probs=141.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      .++|||||||||||||||+.||+.|+++|+|+|.+||+.+||+|++||+++||+.||++|.++++++...++.|||||||
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG   81 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG   81 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999877899999999


Q ss_pred             cccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCccc
Q 016486          266 QQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADH  329 (388)
Q Consensus       266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~  329 (388)
                         ++++++||.+|+. |++|||+++++.       |       ..++.+.++++|++|.+.|++ ||++++++..+ + 
T Consensus        82 ---~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~-~-  156 (172)
T COG0703          82 ---AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTDDRS-E-  156 (172)
T ss_pred             ---cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCCCCc-H-
Confidence               6999999999996 899999999988       1       245568899999999999999 89999888876 3 


Q ss_pred             HHHHHHHHHHHHHHhh
Q 016486          330 AKSVAQASLSALKQLI  345 (388)
Q Consensus       330 ~eeVa~eIl~~L~~~~  345 (388)
                        +++.+|+..|....
T Consensus       157 --~v~~~i~~~l~~~~  170 (172)
T COG0703         157 --EVVEEILEALEGSL  170 (172)
T ss_pred             --HHHHHHHHHHHHhc
Confidence              89999999988654

>PLN02199 shikimate kinase

Probab=100.00  E-value=6e-35  Score=286.00  Aligned_cols=202  Identities=23%  Similarity=0.378  Sum_probs=175.8

Q ss_pred             CCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEE
Q 016486          113 GTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLV  192 (388)
Q Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLI  192 (388)
                      ..|++|.-. ++++..+||++.||    |      +|++.  ++.+....                  .+++++++|+|+
T Consensus        60 ~~~~~~~~~-~~~~~~~le~~~~~----~------~de~~--Lk~~a~~i------------------~~~l~~~~I~LI  108 (303)
T PLN02199         60 AVSPAVSCS-DNNSSALLETGSVY----P------FDEDI--LKRKAEEV------------------KPYLNGRSMYLV  108 (303)
T ss_pred             ccccccccC-CCCchhhcccCCCC----C------CCHHH--HHHHHHHH------------------HHHcCCCEEEEE
Confidence            345666544 88889999999998    6      67764  66665533                  678889999999


Q ss_pred             ecCCCchHHHHHHHHHhcCCcceechhHHHHH-hcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcccccc
Q 016486          193 GDSTEVNEKVALELAVGLGYTPLSTKELLETF-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAA  271 (388)
Q Consensus       193 G~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~-~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~  271 (388)
                      |+|||||||||+.||+.||++|||+|.+|++. .|+++.+||+..||+.||++|.++|+++....++|||||||   +++
T Consensus       109 G~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG---~V~  185 (303)
T PLN02199        109 GMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGG---AVI  185 (303)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCc---ccC
Confidence            99999999999999999999999999999997 68999999999999999999999999998777899999999   699


Q ss_pred             cHHHHHhhcCCcEEEEEcCccc------c-c---------cC------HHHHHHHHHHHhHhccccCcEEEE--------
Q 016486          272 RADKWQHLYAGFTVWLSQTEAM------D-E---------NS------AKEEARRHVKDGKLGYSNADVVVK--------  321 (388)
Q Consensus       272 r~enr~~L~~g~VVyLd~~~e~------D-~---------~d------~~e~l~~l~~eR~~~Y~~AD~vV~--------  321 (388)
                      +++||++|++|++|||++++++      + .         .+      +.+.+.++|++|.++|++||++|+        
T Consensus       186 ~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~  265 (303)
T PLN02199        186 RPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKR  265 (303)
T ss_pred             CHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccc
Confidence            9999999999999999999987      1 0         11      146899999999999999999999        


Q ss_pred             ----cCCCCcccHHHHHHHHHHHHHHhhhcCCCC
Q 016486          322 ----LQGWDADHAKSVAQASLSALKQLIQSDKKL  351 (388)
Q Consensus       322 ----~d~~s~e~~eeVa~eIl~~L~~~~~~~~~l  351 (388)
                          +++.++   ++++.+|++.++.++.+++.|
T Consensus       266 ~~~~td~~s~---~ei~~eIl~~l~~~l~~~~~~  296 (303)
T PLN02199        266 GYKNVSDLTP---TEIAIEAFEQVLSFLEKEETM  296 (303)
T ss_pred             cccccCCCCH---HHHHHHHHHHHHHHHhhcccc
Confidence                666665   599999999999999877765

>PRK13948 shikimate kinase; Provisional

Probab=100.00  E-value=4.4e-32  Score=249.15  Aligned_cols=157  Identities=18%  Similarity=0.177  Sum_probs=142.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt  262 (388)
                      ...+.+|+|+|+|||||||+|+.||+.||++|||+|.++++.+|++++++|++.||+.||++|.++++++....+.||||
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~   86 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL   86 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999998777899999


Q ss_pred             cCCcccccccHHHHHhhcC-CcEEEEEcCccc-------c------ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCcc
Q 016486          263 LGGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------D------ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDAD  328 (388)
Q Consensus       263 GGG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e  328 (388)
                      |||   ++.+++|++.|++ |++|||++++++       +      ..+..+++.++|++|.++|+.||++|++++.+++
T Consensus        87 GgG---~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~~  163 (182)
T PRK13948         87 GGG---TFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRSE  163 (182)
T ss_pred             CCc---EEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHH
Confidence            999   6999999999886 899999999987       1      1234678999999999999889999999988765


Q ss_pred             cHHHHHHHHHHHHHHhh
Q 016486          329 HAKSVAQASLSALKQLI  345 (388)
Q Consensus       329 ~~eeVa~eIl~~L~~~~  345 (388)
                         +++++|++.|+.++
T Consensus       164 ---ei~~~i~~~l~~~~  177 (182)
T PRK13948        164 ---EVVEEIVEKLWAWA  177 (182)
T ss_pred             ---HHHHHHHHHHHHHh
Confidence               99999999998754

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.97  E-value=2.8e-30  Score=271.28  Aligned_cols=181  Identities=15%  Similarity=0.171  Sum_probs=154.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG  264 (388)
                      +...|+|+|||||||||||+.||++||++|+|+|++||+.+|++++++|+++||+.||++|.++|++++...+.||||||
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG   84 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG   84 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            45689999999999999999999999999999999999999999999999999999999999999998866679999999


Q ss_pred             CcccccccHHHHHhh----cC-CcEEEEEcCccc-------cc------cCHHHHHHHHHHHhHhcccc-CcEEEEcCCC
Q 016486          265 GQQGAAARADKWQHL----YA-GFTVWLSQTEAM-------DE------NSAKEEARRHVKDGKLGYSN-ADVVVKLQGW  325 (388)
Q Consensus       265 G~~gav~r~enr~~L----~~-g~VVyLd~~~e~-------D~------~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~  325 (388)
                      |   ++++++||++|    ++ |++|||++++++       +.      .+..+++.++|++|.+.|++ ||++|++++.
T Consensus        85 G---~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~~~~~  161 (542)
T PRK14021         85 G---APMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVHTRGL  161 (542)
T ss_pred             c---hhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEECCCC
Confidence            9   69999999976    44 899999999987       11      23467899999999999999 9999999998


Q ss_pred             CcccHHHHHHHHHHHHHHhhhcCCCC-CCCccceeeccccCCCCCCC
Q 016486          326 DADHAKSVAQASLSALKQLIQSDKKL-PGKKSLYIRLGCRGDWPNIK  371 (388)
Q Consensus       326 s~e~~eeVa~eIl~~L~~~~~~~~~l-~g~k~lyi~~g~~g~~~~~~  371 (388)
                      +++   +++++|++.++.....-..+ .+.+.++++.|+..+.+++.
T Consensus       162 ~~~---~~~~~i~~~~~~~~~~v~~~~~~p~~v~iG~g~l~~l~~~l  205 (542)
T PRK14021        162 TPQ---AAAKKLIDMVAERTVHVTGAGIEPYDVRIGEGAMNHLPQVL  205 (542)
T ss_pred             CHH---HHHHHHHHHHHhcceEeecCCCCCceEEEcCChHHHHHHHH
Confidence            765   99999999997632211111 34577899999877665544

>PRK13949 shikimate kinase; Provisional

Probab=99.96  E-value=3e-29  Score=226.70  Aligned_cols=149  Identities=20%  Similarity=0.246  Sum_probs=133.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|+|||||||+|+.||+.||++|+|+|.++++..++++.++|++.|++.||++|.++++++....+.||||||| 
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg-   80 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG-   80 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc-
Confidence            4799999999999999999999999999999999999999999999999999999999999999987667899999999 


Q ss_pred             ccccccHHHHHhhcC-CcEEEEEcCccc-------cc--------cC---HHHHHHHHHHHhHhccccCcEEEEcCCCCc
Q 016486          267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------DE--------NS---AKEEARRHVKDGKLGYSNADVVVKLQGWDA  327 (388)
Q Consensus       267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D~--------~d---~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~  327 (388)
                        ++..++++++|++ |++|||++|++.       +.        .+   ..+.+.++|++|.++|++||++|++++.++
T Consensus        81 --~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~~~  158 (169)
T PRK13949         81 --APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKLED  158 (169)
T ss_pred             --ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence              5999999999986 999999999986       10        11   124678899999999999999999999875


Q ss_pred             ccHHHHHHHHHHHH
Q 016486          328 DHAKSVAQASLSAL  341 (388)
Q Consensus       328 e~~eeVa~eIl~~L  341 (388)
                         ++++++|++.+
T Consensus       159 ---~e~~~~I~~~~  169 (169)
T PRK13949        159 ---ESQIEQLVQRL  169 (169)
T ss_pred             ---HHHHHHHHHhC
Confidence               49999988753

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.96  E-value=2.7e-29  Score=223.26  Aligned_cols=142  Identities=23%  Similarity=0.283  Sum_probs=123.1

Q ss_pred             CCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcccccccHH
Q 016486          195 STEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARAD  274 (388)
Q Consensus       195 ~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~e  274 (388)
                      |||||||||++||+.||++|+|+|++|++.+|++++++|.++|++.||+.|.++|+++....++|||||||   +++.++
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG---~~~~~~   77 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGG---IVLKEE   77 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TT---GGGSHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCC---CcCcHH
Confidence            79999999999999999999999999999999999999999999999999999999999877999999999   699999


Q ss_pred             HHHhhcC-CcEEEEEcCccc--------cc------cCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHHHHHHHHH
Q 016486          275 KWQHLYA-GFTVWLSQTEAM--------DE------NSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAKSVAQASL  338 (388)
Q Consensus       275 nr~~L~~-g~VVyLd~~~e~--------D~------~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl  338 (388)
                      ++++|++ +.+|||+++++.        +.      ....+.+.+++.+|.+.|++ ++++|++++.++   ++++++|+
T Consensus        78 ~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~~~~~~---~~i~~~i~  154 (158)
T PF01202_consen   78 NRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAADIVVDTDGSPP---EEIAEEIL  154 (158)
T ss_dssp             HHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEETSSCHH---HHHHHHHH
T ss_pred             HHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeCCCCCH---HHHHHHHH
Confidence            9999995 999999999987        11      11223456666699999999 889999998764   49999999


Q ss_pred             HHHH
Q 016486          339 SALK  342 (388)
Q Consensus       339 ~~L~  342 (388)
                      +.|+
T Consensus       155 ~~l~  158 (158)
T PF01202_consen  155 EFLK  158 (158)
T ss_dssp             HHH-
T ss_pred             HHhC
Confidence            9875

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.96  E-value=5.8e-28  Score=218.45  Aligned_cols=153  Identities=24%  Similarity=0.295  Sum_probs=138.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG  264 (388)
                      +.++|+|+|++||||||+|+.||+.+|++|+|+|..+++..|+++.++|+..|+..||+.|.++++.+.....+||+|||
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg   82 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG   82 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999998877789999999


Q ss_pred             CcccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486          265 GQQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDAD  328 (388)
Q Consensus       265 G~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e  328 (388)
                      |   ++.+++++++|++ +++|||++|++.       +       .....+.+.+++++|.++|++ ||++|++++.+++
T Consensus        83 g---~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt~~~s~~  159 (172)
T PRK05057         83 G---SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIRTDDQSAK  159 (172)
T ss_pred             c---hhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEECCCCCHH
Confidence            9   6999999999985 999999999987       1       123456799999999999999 9999999998865


Q ss_pred             cHHHHHHHHHHHHHH
Q 016486          329 HAKSVAQASLSALKQ  343 (388)
Q Consensus       329 ~~eeVa~eIl~~L~~  343 (388)
                         +++++|++.+++
T Consensus       160 ---ei~~~i~~~l~~  171 (172)
T PRK05057        160 ---VVANQIIHMLES  171 (172)
T ss_pred             ---HHHHHHHHHHhh
Confidence               999999888753

>PRK13946 shikimate kinase; Provisional

Probab=99.96  E-value=7.5e-28  Score=218.96  Aligned_cols=163  Identities=25%  Similarity=0.286  Sum_probs=146.1

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      .+.+.+++|+|+|++||||||+|+.||++||++|+|+|.++++..|+++.++|...|+..|++.|.+++..+.....+||
T Consensus         5 ~~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi   84 (184)
T PRK13946          5 RAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL   84 (184)
T ss_pred             hhccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999987778999


Q ss_pred             EecCCcccccccHHHHHhhcC-CcEEEEEcCccc--------c------ccCHHHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486          261 ATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM--------D------ENSAKEEARRHVKDGKLGYSNADVVVKLQGW  325 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~--------D------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~  325 (388)
                      +||||   .++.+++|++|+. +++|||++|++.        .      ..++.+.+++++++|.++|..+|++|++++.
T Consensus        85 ~~ggg---~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~  161 (184)
T PRK13946         85 ATGGG---AFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVASRDV  161 (184)
T ss_pred             ECCCC---CcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCC
Confidence            99999   5899999999975 899999999987        1      1345678899999999999999999999988


Q ss_pred             CcccHHHHHHHHHHHHHHhhhcCC
Q 016486          326 DADHAKSVAQASLSALKQLIQSDK  349 (388)
Q Consensus       326 s~e~~eeVa~eIl~~L~~~~~~~~  349 (388)
                      +++   ++++.|+..|+.+..++.
T Consensus       162 ~~~---~~~~~i~~~i~~~~~~~~  182 (184)
T PRK13946        162 PKE---VMADEVIEALAAYLEKEE  182 (184)
T ss_pred             CHH---HHHHHHHHHHHHhhcccc
Confidence            764   999999999998877553

>PRK00625 shikimate kinase; Provisional

Probab=99.96  E-value=7.1e-28  Score=219.45  Aligned_cols=151  Identities=21%  Similarity=0.177  Sum_probs=128.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC----chhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~----sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt  262 (388)
                      ++|+|+|||||||||+|+.||++||++|+|+|++|++.+|+    +++++|+.+|++.||+.|.++++.+.. .+.||+|
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~   79 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence            47999999999999999999999999999999999999998    999999999999999999999998875 5789999


Q ss_pred             cCCcccccccHHHHHhhcC-CcEEEEEcCccc-------cc----cCHHHHHHHHHHHhHhcccc-CcEEEEcCCC--Cc
Q 016486          263 LGGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------DE----NSAKEEARRHVKDGKLGYSN-ADVVVKLQGW--DA  327 (388)
Q Consensus       263 GGG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D~----~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~--s~  327 (388)
                      |||   ++..+++++.|+. +++|||++|+++       .+    ....+.+.++|++|.+.|++ ||++|+++..  ++
T Consensus        80 GGg---~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~~~  156 (173)
T PRK00625         80 GGG---TLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLDHVAETS  156 (173)
T ss_pred             CCC---ccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCCCcccCC
Confidence            999   6999999999975 899999999877       11    11257899999999999998 9999887732  21


Q ss_pred             -ccHHHHHHHHHHHH
Q 016486          328 -DHAKSVAQASLSAL  341 (388)
Q Consensus       328 -e~~eeVa~eIl~~L  341 (388)
                       ..+.++++.++..|
T Consensus       157 ~~~~~~~~~~~~~~~  171 (173)
T PRK00625        157 SESLMRACQSFCTLL  171 (173)
T ss_pred             CCCHHHHHHHHHHHh
Confidence             22346666665544

>PRK13947 shikimate kinase; Provisional

Probab=99.94  E-value=1.4e-26  Score=205.43  Aligned_cols=146  Identities=19%  Similarity=0.242  Sum_probs=132.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ  267 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~  267 (388)
                      +|+|+|+|||||||+|+.||++||++|+|.|.+++++.|+++.++|.+.|+..|++.|.++++.+....++||+||||  
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g--   80 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG--   80 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC--
Confidence            799999999999999999999999999999999999999999999999999999999999999998777899999999  


Q ss_pred             cccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHH
Q 016486          268 GAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKS  332 (388)
Q Consensus       268 gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~ee  332 (388)
                       .+++++++..|++ +++|||+++++.       .       ..+..+.+.+++.+|.++|..||++|++++.+++   +
T Consensus        81 -~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~---~  156 (171)
T PRK13947         81 -VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTID---E  156 (171)
T ss_pred             -CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHH---H
Confidence             5899999998886 899999999886       1       1335678889999999999889999999988764   8


Q ss_pred             HHHHHHH
Q 016486          333 VAQASLS  339 (388)
Q Consensus       333 Va~eIl~  339 (388)
                      ++++|..
T Consensus       157 i~~~I~~  163 (171)
T PRK13947        157 VAEEIIK  163 (171)
T ss_pred             HHHHHHH
Confidence            9988888

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.93  E-value=1.2e-24  Score=191.27  Aligned_cols=156  Identities=29%  Similarity=0.365  Sum_probs=138.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG  263 (388)
                      .++++|+|+|++||||||+|+.||+.||++|+|+|.++++..|.++.+++.+.|+..|++.|.++++.+....++||++|
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g   81 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTG   81 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999987667899999


Q ss_pred             CCcccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          264 GGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       264 GG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                      ||   .++.+.+|+.|+. +++|||++|.+.       +       ..+..+.+.+++.+|.+.|.. +|++|++++.++
T Consensus        82 ~~---~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~  158 (175)
T PRK00131         82 GG---AVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSP  158 (175)
T ss_pred             CC---EeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCH
Confidence            88   5889999999954 899999999986       1       123456788999999999988 999999999886


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q 016486          328 DHAKSVAQASLSALKQLI  345 (388)
Q Consensus       328 e~~eeVa~eIl~~L~~~~  345 (388)
                      +   ++++.|++.|+.+.
T Consensus       159 ~---e~~~~I~~~v~~~~  173 (175)
T PRK00131        159 E---EVVNEILEKLEAAW  173 (175)
T ss_pred             H---HHHHHHHHHHHhhc
Confidence            5   99999999998653

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.92  E-value=1.1e-24  Score=193.77  Aligned_cols=149  Identities=23%  Similarity=0.337  Sum_probs=130.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|++||||||+|+.||++||++|+|+|.+++...|+++.+++.+.|++.|++.|.++++.+. ..+.||+|||| 
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg-   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG-   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC-
Confidence            5799999999999999999999999999999999999999999999999999999999999997664 46789999999 


Q ss_pred             ccccccHHHHHhhcC-CcEEEEEcCccc-------c----------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------D----------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D----------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                        .+++++++++|++ +++|||+++++.       .          +.+..+.+.+.+++|.+.|.. ++++|+.+ .+ 
T Consensus        81 --~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~-~~-  156 (171)
T PRK03731         81 --IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDAT-QP-  156 (171)
T ss_pred             --ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCC-CC-
Confidence              5999999999985 899999999886       1          123357788999999999998 88888876 33 


Q ss_pred             ccHHHHHHHHHHHHHH
Q 016486          328 DHAKSVAQASLSALKQ  343 (388)
Q Consensus       328 e~~eeVa~eIl~~L~~  343 (388)
                        +++|+++|+..|++
T Consensus       157 --~e~v~~~i~~~l~~  170 (171)
T PRK03731        157 --PSQVVSEILSALAQ  170 (171)
T ss_pred             --HHHHHHHHHHHHhc
Confidence              45999999988764

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.91  E-value=8.6e-24  Score=207.82  Aligned_cols=155  Identities=23%  Similarity=0.277  Sum_probs=137.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhc-CCCeEEEec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS-HVRAVVATL  263 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~-~~~~VVStG  263 (388)
                      ++.+|+|+|++||||||+|+.||+.||++|||+|..+++..|+++.+++...|++.|+++|.+++.++.. ...+||+||
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~G  211 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATG  211 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence            5689999999999999999999999999999999999999999999999999999999999999998764 456899999


Q ss_pred             CCcccccccHHHHHhhcC-CcEEEEEcCccc--------c-------ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCc
Q 016486          264 GGQQGAAARADKWQHLYA-GFTVWLSQTEAM--------D-------ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDA  327 (388)
Q Consensus       264 GG~~gav~r~enr~~L~~-g~VVyLd~~~e~--------D-------~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~  327 (388)
                      ||   ++..+.++.++.. +++|||++|++.        +       .....+.+.+++++|.++|..||++|++++.++
T Consensus       212 gg---~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~~s~  288 (309)
T PRK08154        212 GG---IVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTSGLTV  288 (309)
T ss_pred             Cc---hhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence            99   5888889887764 889999999986        1       123457899999999999999999999999876


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q 016486          328 DHAKSVAQASLSALKQLI  345 (388)
Q Consensus       328 e~~eeVa~eIl~~L~~~~  345 (388)
                      +   +++++|...++.++
T Consensus       289 e---e~~~~I~~~l~~~~  303 (309)
T PRK08154        289 A---QSLARLRELVRPAL  303 (309)
T ss_pred             H---HHHHHHHHHHHHHh
Confidence            5   99999999987654

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.91  E-value=1.1e-23  Score=219.25  Aligned_cols=172  Identities=19%  Similarity=0.176  Sum_probs=142.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|+|||||||+|+.||+.||++|+|+|+++++..|+++.++|+++|+++||++|.++++++....+.||+|||| 
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg-   79 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG-   79 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc-
Confidence            4799999999999999999999999999999999999999999999999999999999999999998767899999999 


Q ss_pred             ccccccHHHHHhhcCCcEEEEEcCccc-------cc----cCHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHH
Q 016486          267 QGAAARADKWQHLYAGFTVWLSQTEAM-------DE----NSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQ  335 (388)
Q Consensus       267 ~gav~r~enr~~L~~g~VVyLd~~~e~-------D~----~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~  335 (388)
                        +++++++|+.|+++.+|||++++++       +.    ....+++.++|++|++.|+++ ++|++++.+++   +++.
T Consensus        80 --vv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~-~~IDt~~~s~~---e~~~  153 (488)
T PRK13951         80 --VVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEF-RGIDTSKLNEW---ETTA  153 (488)
T ss_pred             --cccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcc-cEEECCCCCHH---HHHH
Confidence              6999999999998779999999987       11    112467899999999999986 47999988763   5555


Q ss_pred             HH-HHHHHHhhhcCCCCCCCccceeeccccCCC
Q 016486          336 AS-LSALKQLIQSDKKLPGKKSLYIRLGCRGDW  367 (388)
Q Consensus       336 eI-l~~L~~~~~~~~~l~g~k~lyi~~g~~g~~  367 (388)
                      +| ++.+.. .... --.++|.++|..|...+.
T Consensus       154 ~iv~~~~~~-~~~~-~~~~~~~v~~~~~~~~~~  184 (488)
T PRK13951        154 LVVLEALDE-KEIS-TIEKPHLVKIILGGFKRV  184 (488)
T ss_pred             HHHHHhhhc-ceee-ecCCceeEEEeccccccC
Confidence            55 333311 1101 136788899988887655

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.89  E-value=1.5e-22  Score=175.40  Aligned_cols=138  Identities=27%  Similarity=0.359  Sum_probs=121.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ  267 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~  267 (388)
                      +|+|+|++||||||+|+.||+.||++++|.|.++++..++++.+++...|++.|+..|.+++..+....+.||++|+|  
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~--   78 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGG--   78 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCC--
Confidence            589999999999999999999999999999999999999999999999999999999999998888777899999988  


Q ss_pred             cccccHHHHHhhc-CCcEEEEEcCccc------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486          268 GAAARADKWQHLY-AGFTVWLSQTEAM------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDAD  328 (388)
Q Consensus       268 gav~r~enr~~L~-~g~VVyLd~~~e~------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e  328 (388)
                       .+....+++.+. .+++|||++|.+.      .       .....+.+.+++++|.++|++ ||++|++++.+++
T Consensus        79 -~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~ad~~i~~~~~~~~  153 (154)
T cd00464          79 -AVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREVADLTIDTDELSPE  153 (154)
T ss_pred             -ccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCCC
Confidence             488887766655 4899999999886      1       011225799999999999999 9999999998764

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK09169 hypothetical protein; Validated

Probab=99.88  E-value=2.7e-23  Score=238.55  Aligned_cols=278  Identities=14%  Similarity=0.063  Sum_probs=207.1

Q ss_pred             cccCCCCcceeccccccccc---cc--cccCC-CCcccccccc-cccccccccccc-CCCCceeecCCCceEEEEEccCC
Q 016486           27 QHFSSPRHSVSIFKPIFISS---SL--HKSTN-VVPIKTHDRR-RFTCSNSLSSIP-ANTSQYEFSDGSAEIELRLQLGS   98 (388)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~---~~--~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   98 (388)
                      .....+||++.+|+..|...   ++  +++.| .....+|+|. .-+-|+++.+.. .++.+|.|     ||+|      
T Consensus      1947 ~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~~~Vkv~N~F~~~~~~YkGVNv~l~~s~~g~~f-----EIQF------ 2015 (2316)
T PRK09169       1947 LVNDALRYSVVLPPQTFVAGYRRILGALDEQGHTRTRVTNHFKKRGPAFKGINVTLDATGEGVRL-----EIQF------ 2015 (2316)
T ss_pred             hccceeeEEEecCCccHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCccceEEeeecCCCCceE-----EEEe------
Confidence            46788999999999999887   22  56666 4555677675 457889999998 89999999     9999      


Q ss_pred             cccccccceeeccCCCeEEEEEcc-CCCcc----hh-hhhhhhhhccCCCCceeecchhH---HHHHhhc---cCCCCCC
Q 016486           99 LEIQSSKDIFVDADGTCLTVRVNR-SGSFI----TL-IETNQLFDKIKPTETIWYIDEDQ---LVINLKK---QDPELKW  166 (388)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l-~~~~~l~~~i~~~e~iw~~d~~~---~v~~~~~---~~~~~~w  166 (388)
                       |++.|.+++...|+.|..++-++ .|.+.    .| -+..+.|..|.=..+++.|+|=+   .-.....   ......=
T Consensus      2016 -HT~qSF~lK~r~H~lYkq~q~l~l~gas~e~~~~ll~~Ar~af~aV~vP~G~E~I~dw~~~~~~~~~~~~~~~~~~~~~ 2094 (2316)
T PRK09169       2016 -HTPQTFDLKERFHDLYKQAQALQLQGASSEQQRALLAPARDAFRAVPTPPGCEEIDDWEAEPPSTARPRAPAAAAPAAG 2094 (2316)
T ss_pred             -cCHHHHHHHHHhHHHHHHHHhhcccCCCHHHHHHHHHHHHHhcccCCCCcchhhccchhhcCccccccccccccccccc
Confidence             99999999999999999886554 33221    22 22445554444323344433211   0010000   0000000


Q ss_pred             -chhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHH
Q 016486          167 -PDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGE  245 (388)
Q Consensus       167 -p~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E  245 (388)
                       |.     ..-.+.....+.+.+|+|+|+||+||||||+.||+.|++.|+|+|..|++..|++|.+||..+|  .||+.|
T Consensus      2095 ~~~-----~~~~~~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~E 2167 (2316)
T PRK09169       2095 APR-----SPALAELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQA 2167 (2316)
T ss_pred             ccc-----chhhHHHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHH
Confidence             00     0001122355678899999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCccc--c------------ccCH-------HHHHH
Q 016486          246 CDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM--D------------ENSA-------KEEAR  303 (388)
Q Consensus       246 ~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~--D------------~~d~-------~e~l~  303 (388)
                      .+.++.+.. ..+||++|||   ++..+++|..|.. |++|||+.+.+.  +            ..+.       .+...
T Consensus      2168 aa~V~Dllr-~~vVLSTGGG---av~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl 2243 (2316)
T PRK09169       2168 AARVRDALR-WEVVLPAEGF---GAAVEQARQALGAKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSL 2243 (2316)
T ss_pred             HHHHHHHhc-CCeEEeCCCC---cccCHHHHHHHHHCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHH
Confidence            999999886 6799999999   6999999999985 999999999877  1            1222       15566


Q ss_pred             HHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          304 RHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       304 ~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                      +++++|.+.|++ +|+.|+++..++
T Consensus      2244 ~Lk~eRhpLYEqvADl~V~~~~~~~ 2268 (2316)
T PRK09169       2244 RTKNKTHKLYEKLQDLEVAPARERD 2268 (2316)
T ss_pred             HHHHHhHHHHHHhcCcccccCCCCc
Confidence            788999999988 999999887655

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4.7e-16  Score=139.45  Aligned_cols=134  Identities=22%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             EecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhccCcHHHHHHH--HHHHHHHhc-CCCeEEEecCCc
Q 016486          192 VGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAEGSDSVVNGE--CDVLESLSS-HVRAVVATLGGQ  266 (388)
Q Consensus       192 IG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~Ge~~FRe~E--~~vL~~L~~-~~~~VVStGGG~  266 (388)
                      ||.+||||||||+.||++||++|||+|+++-..  .+|+-...+.  ++++..++|  .+.+.++.+ ....||+|+   
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~--DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS---   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN--DDDRWPWLEALGDAAASLAQKNKHVVIACS---   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC--cchhhHHHHHHHHHHHHhhcCCCceEEecH---
Confidence            699999999999999999999999999995322  2222222233  334444443  344445443 335899999   


Q ss_pred             ccccccHHHHHhhcC---C-cEEEEEcCccccccCHHHHHHHHHHHhHhccccCcE----------------EEEcCCCC
Q 016486          267 QGAAARADKWQHLYA---G-FTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADV----------------VVKLQGWD  326 (388)
Q Consensus       267 ~gav~r~enr~~L~~---g-~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD~----------------vV~~d~~s  326 (388)
                         .++..+|+.|+.   + .+|||+.+.        +.+.+++..|+.||+.+++                +|.++-..
T Consensus        76 ---ALKr~YRD~LR~~~~~~~Fv~L~g~~--------~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi~~  144 (161)
T COG3265          76 ---ALKRSYRDLLREANPGLRFVYLDGDF--------DLILERMKARKGHFMPASLLDSQFATLEEPGADEDVLTIDIDQ  144 (161)
T ss_pred             ---HHHHHHHHHHhccCCCeEEEEecCCH--------HHHHHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeCCC
Confidence               678899999995   3 377777775        5688999999999976531                34444333


Q ss_pred             cccHHHHHHHHHHHHHH
Q 016486          327 ADHAKSVAQASLSALKQ  343 (388)
Q Consensus       327 ~e~~eeVa~eIl~~L~~  343 (388)
                      +  +++|+++++.+|+.
T Consensus       145 ~--~e~vv~~~~~~l~~  159 (161)
T COG3265         145 P--PEEVVAQALAWLKE  159 (161)
T ss_pred             C--HHHHHHHHHHHHhc
Confidence            3  67999999998875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.64  E-value=5.2e-16  Score=141.15  Aligned_cols=154  Identities=11%  Similarity=0.059  Sum_probs=110.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHH---------------
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLE---------------  250 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~---------------  250 (388)
                      |..|+|+|++|||||||+++|+..++..|++.|..+.+...+...+++...+++.|+.+|...+.               
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            56899999999999999999999999999999998887666666677777788888887655442               


Q ss_pred             --HHhcCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCccc-------cccCHHHHHHHHHHHhHhccccCcEEE
Q 016486          251 --SLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM-------DENSAKEEARRHVKDGKLGYSNADVVV  320 (388)
Q Consensus       251 --~L~~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D~~d~~e~l~~l~~eR~~~Y~~AD~vV  320 (388)
                        ...+.+..||+.|++    .....+++.+.. ..+|||++|.++       ......+.+.+++ +|.+.|..+|++|
T Consensus        82 ~~~~l~~g~~VI~~G~~----~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl-~r~~~~~~ad~~v  156 (186)
T PRK10078         82 IDLWLHAGFDVLVNGSR----AHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARL-ARAARYQPQDCHT  156 (186)
T ss_pred             HHHHHhCCCEEEEeChH----HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHH-HHhhhhccCCEEE
Confidence              122234567777665    444566666654 679999999887       1122234566666 4677888888444


Q ss_pred             EcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          321 KLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       321 ~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      ..++.++   ++++++|...|..-.+.
T Consensus       157 i~~~~s~---ee~~~~i~~~l~~~~~~  180 (186)
T PRK10078        157 LNNDGSL---RQSVDTLLTLLHLSQKE  180 (186)
T ss_pred             EeCCCCH---HHHHHHHHHHHhhcCcc
Confidence            3354444   59999998888655443

>PRK03839 putative kinase; Provisional

Probab=99.64  E-value=1.2e-15  Score=137.32  Aligned_cols=140  Identities=17%  Similarity=0.061  Sum_probs=94.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      +.|+|+|+|||||||+|+.||+++|++|+|+|+++++.   .+.+++...++..|+.+|..+++.+. . ..||.+|.- 
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~vIidG~~-   74 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK---GIGEEKDDEMEIDFDKLAYFIEEEFK-E-KNVVLDGHL-   74 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc---CCcccCChhhhcCHHHHHHHHHHhcc-C-CCEEEEecc-
Confidence            36999999999999999999999999999999998763   46677777888899999998876442 2 335666621 


Q ss_pred             ccccccHHHHHhhcCCcEEEEEcCccc-------cccC---HHHHHHHHHHHh--Hhcccc--CcEEEEcCCCCcccHHH
Q 016486          267 QGAAARADKWQHLYAGFTVWLSQTEAM-------DENS---AKEEARRHVKDG--KLGYSN--ADVVVKLQGWDADHAKS  332 (388)
Q Consensus       267 ~gav~r~enr~~L~~g~VVyLd~~~e~-------D~~d---~~e~l~~l~~eR--~~~Y~~--AD~vV~~d~~s~e~~ee  332 (388)
                               ...+..+++|||++++++       ....   ..+.....+.+.  ...|..  .-++|++++.++   ++
T Consensus        75 ---------~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~---ee  142 (180)
T PRK03839         75 ---------SHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTP---EE  142 (180)
T ss_pred             ---------ccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCH---HH
Confidence                     112335899999999987       1111   011111111110  012322  335677766655   49


Q ss_pred             HHHHHHHHHHHh
Q 016486          333 VAQASLSALKQL  344 (388)
Q Consensus       333 Va~eIl~~L~~~  344 (388)
                      |+++|...|+..
T Consensus       143 v~~~I~~~l~~~  154 (180)
T PRK03839        143 VVEEILELIKSG  154 (180)
T ss_pred             HHHHHHHHHhcC
Confidence            999999888754

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.63  E-value=8.2e-16  Score=137.93  Aligned_cols=147  Identities=22%  Similarity=0.119  Sum_probs=101.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHH-----HHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD-----VLESLS  253 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~-----vL~~L~  253 (388)
                      .++..|+|+|++||||||+++.|++.|+     ..++|+|.+.+.         +...|.+.+.+.|..     +.+.+.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~   75 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI---------LGHYGYDKQSRIEMALKRAKLAKFLA   75 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh---------cCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999996     788998886432         222233333333321     222343


Q ss_pred             cCCCeEEEecCCccccc--ccHHHHHhhcCCcEEEEEcCccc----cc-----cCHHHHHHHHHHHhHhcccc-CcEEEE
Q 016486          254 SHVRAVVATLGGQQGAA--ARADKWQHLYAGFTVWLSQTEAM----DE-----NSAKEEARRHVKDGKLGYSN-ADVVVK  321 (388)
Q Consensus       254 ~~~~~VVStGGG~~gav--~r~enr~~L~~g~VVyLd~~~e~----D~-----~d~~e~l~~l~~eR~~~Y~~-AD~vV~  321 (388)
                      ..+..||++|++   ..  .+..++..+...++|||++++++    +.     ....+.+.+++..|.+.|.. ||++|+
T Consensus        76 ~~g~~VI~~~~~---~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~  152 (176)
T PRK05541         76 DQGMIVIVTTIS---MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVID  152 (176)
T ss_pred             hCCCEEEEEeCC---cHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEe
Confidence            455688888876   23  44455555555789999999987    11     11224566778888999977 999999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHHh
Q 016486          322 LQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      +++..  ++++++++|+..++..
T Consensus       153 ~~~~~--~~~~~v~~i~~~l~~~  173 (176)
T PRK05541        153 NSCRT--SLDEKVDLILNKLKLR  173 (176)
T ss_pred             CCCCC--CHHHHHHHHHHHHHHh
Confidence            98632  2568999998888654

>PRK04182 cytidylate kinase; Provisional

Probab=99.62  E-value=5.1e-15  Score=131.13  Aligned_cols=148  Identities=21%  Similarity=0.249  Sum_probs=95.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH---HhcCchhhhhhccCcHHH---HHHHHHHHHHHh-cCCCeE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET---FAKQTIDSWMLAEGSDSV---VNGECDVLESLS-SHVRAV  259 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~---~~g~sI~eif~~~Ge~~F---Re~E~~vL~~L~-~~~~~V  259 (388)
                      +.|+|+|++||||||+|+.||+.||++++|+|+++.+   ..|+++.+++. .++..+   +.++..+. .+. ..+.+|
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~V   78 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDRRQL-EIAEKEDNVV   78 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHHHHH-HHHhcCCCEE
Confidence            4699999999999999999999999999998876655   44667776653 344333   34443333 444 444555


Q ss_pred             EEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccC---HHHHHH-----------HHHHHhHhccccCc
Q 016486          260 VATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENS---AKEEAR-----------RHVKDGKLGYSNAD  317 (388)
Q Consensus       260 VStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d---~~e~l~-----------~l~~eR~~~Y~~AD  317 (388)
                      |. |.+. +...++      ..+++|||++|++.        +..+   ....+.           .++..|.+.|..||
T Consensus        79 i~-g~~~-~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d  150 (180)
T PRK04182         79 LE-GRLA-GWMAKD------YADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYD  150 (180)
T ss_pred             EE-Eeec-ceEecC------CCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence            53 3210 022221      14789999999887        1111   112222           22222233356699


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          318 VVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       318 ~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      ++|+++..+++   ++++.|...++.+..+
T Consensus       151 ~~idt~~~~~~---~~~~~I~~~~~~~~~~  177 (180)
T PRK04182        151 LVINTSRWDPE---GVFDIILTAIDKLLKA  177 (180)
T ss_pred             EEEECCCCCHH---HHHHHHHHHHHHHhcc
Confidence            99999998765   9999999999876543

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.1e-15  Score=135.45  Aligned_cols=137  Identities=16%  Similarity=0.182  Sum_probs=102.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHH-----HHHhcC-chhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL-----ETFAKQ-TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI-----E~~~g~-sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      -.|+++|.+||||||+|++|+++||++|+|+|+++     |++... ++.   +++.+.|...+-..+.+.+.+.+.+|+
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vVl   89 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVVL   89 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEEE
Confidence            47999999999999999999999999999999995     343322 222   345566666666667777777778999


Q ss_pred             EecCCcccccccHHHHHhhcC------------C--cEEEEEcCccccccCHHHHHHHHHHHhHhccccCc---------
Q 016486          261 ATLGGQQGAAARADKWQHLYA------------G--FTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNAD---------  317 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~~------------g--~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD---------  317 (388)
                      ||+      .++..+|+.|++            .  .+|||.++.        +.+.+++..|..+|+.+|         
T Consensus        90 ACS------aLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~--------evi~~Rl~~R~gHFMp~~lleSQf~~L  155 (191)
T KOG3354|consen   90 ACS------ALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASF--------EVILKRLKKRKGHFMPADLLESQFATL  155 (191)
T ss_pred             EhH------HHHHHHHHHHHhhcccCCccCCccceEEEeeeeccH--------HHHHHHHhhcccccCCHHHHHHHHHhc
Confidence            999      677888888864            1  367777654        678899999999987653         


Q ss_pred             ----------EEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          318 ----------VVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       318 ----------~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                                +.|++...+   ++++++.|++.+..
T Consensus       156 E~p~~~e~div~isv~~~~---~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  156 EAPDADEEDIVTISVKTYS---VEEIVDTIVKMVAL  188 (191)
T ss_pred             cCCCCCccceEEEeeccCC---HHHHHHHHHHHHHh
Confidence                      235555544   45888888887653

>PRK14532 adenylate kinase; Provisional

Probab=99.56  E-value=1.8e-14  Score=130.37  Aligned_cols=146  Identities=16%  Similarity=0.156  Sum_probs=98.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      ++|+|+|+|||||||+|+.||+++|+.+|++|+++++..      |+.+.++++ .|+..+.++-..++......    +
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~----~   75 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPE----A   75 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhC----c
Confidence            469999999999999999999999999999999998753      345667776 47777776666665544321    1


Q ss_pred             EecCCcccccc-----cHH---HH-HhhcC-----CcEEEEEcCccc--c-----------c----cCHHHHHHHHHHHh
Q 016486          261 ATLGGQQGAAA-----RAD---KW-QHLYA-----GFTVWLSQTEAM--D-----------E----NSAKEEARRHVKDG  309 (388)
Q Consensus       261 StGGG~~gav~-----r~e---nr-~~L~~-----g~VVyLd~~~e~--D-----------~----~d~~e~l~~l~~eR  309 (388)
                      .+++|   +++     +..   .+ +.+..     ..+|||++|.++  +           .    .....++...++++
T Consensus        76 ~~~~g---~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~  152 (188)
T PRK14532         76 EAAGG---AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQT  152 (188)
T ss_pred             CccCc---EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHH
Confidence            23333   122     222   22 23321     369999999887  0           0    11345666666766


Q ss_pred             H---hccccCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          310 K---LGYSNADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       310 ~---~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                      .   ++|...+.++.+++..+  +++|+++|...|.
T Consensus       153 ~~i~~~y~~~~~~~~id~~~~--~eev~~~I~~~l~  186 (188)
T PRK14532        153 APLLPYYAGQGKLTEVDGMGS--IEAVAASIDAALE  186 (188)
T ss_pred             HHHHHHHHhcCCEEEEECCCC--HHHHHHHHHHHHh
Confidence            4   56877667777876432  5699999988875

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.53  E-value=8.4e-15  Score=155.48  Aligned_cols=165  Identities=16%  Similarity=0.171  Sum_probs=110.1

Q ss_pred             CCCCchhh---hhhHHhhhhhhh-ccCCCeEEEEecCCCchHHHHHHHHHhcCC------cceechhHHHHHhcCchhhh
Q 016486          163 ELKWPDIV---ESWESLTAGSMQ-LLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSW  232 (388)
Q Consensus       163 ~~~wp~~~---~~W~sl~~~~~~-~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~------~fID~D~lIE~~~g~sI~ei  232 (388)
                      ++..|.|.   |.|..|+....+ ..++..|+|+|+|||||||||+.||++|+.      .++|+|.+...+.       
T Consensus       365 G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~-------  437 (568)
T PRK05537        365 GLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS-------  437 (568)
T ss_pred             CCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc-------
Confidence            34445443   357666654433 335678999999999999999999999996      9999998744332       


Q ss_pred             hhccCcHHHHHHHHHHH--------HHHhcCCCeEE-EecCCcccccccHHHHHhhcC-C--cEEEEEcCccc----cc-
Q 016486          233 MLAEGSDSVVNGECDVL--------ESLSSHVRAVV-ATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAM----DE-  295 (388)
Q Consensus       233 f~~~Ge~~FRe~E~~vL--------~~L~~~~~~VV-StGGG~~gav~r~enr~~L~~-g--~VVyLd~~~e~----D~-  295 (388)
                          |+..|++.|++..        ..+.+.+..|| +.....  ...++.+++.+++ +  ++|||+++.++    +. 
T Consensus       438 ----ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~--~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr  511 (568)
T PRK05537        438 ----SELGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPY--RATRREVREMIEAYGGFIEVHVATPLEVCEQRDRK  511 (568)
T ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCch--HHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccc
Confidence                2334444443321        12222233333 222111  1234678888875 5  58999999887    11 


Q ss_pred             ----cCHHHHHHHHHHHhHhccc-c-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          296 ----NSAKEEARRHVKDGKLGYS-N-ADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       296 ----~d~~e~l~~l~~eR~~~Y~-~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                          ....+.+..++.+|.++|. . ||++|++++.+++   +++++|+..|+.
T Consensus       512 ~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~~~s~~---eiv~~Il~~L~~  562 (568)
T PRK05537        512 GLYAKAREGKIKGFTGISDPYEPPANPELVIDTTNVTPD---ECAHKILLYLEE  562 (568)
T ss_pred             cccccchhchhhccccccccccCCCCCcEEEECCCCCHH---HHHHHHHHHHHH
Confidence                1224567888999999996 4 9999999987654   999999988864

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.52  E-value=1.6e-13  Score=124.94  Aligned_cols=146  Identities=23%  Similarity=0.304  Sum_probs=103.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhh--hhccCcHHHHHHHHHHHHHHhcCCCeEEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW--MLAEGSDSVVNGECDVLESLSSHVRAVVA  261 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~ei--f~~~Ge~~FRe~E~~vL~~L~~~~~~VVS  261 (388)
                      +.|.|.|++|||||||++.||+.||+++|.+..++.+++   ||++.++  +++...+.-.++.+...+-. .++++||-
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a-~~~nvVle   79 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELA-KEGNVVLE   79 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHH-HcCCeEEh
Confidence            468999999999999999999999999999988877664   7898887  35666666666666555433 35677773


Q ss_pred             -ecCCcccccccHHHHHhh-cCCcEEEEEcCccc--------cccCHHHHHHHHHHHhH--------hcc-------ccC
Q 016486          262 -TLGGQQGAAARADKWQHL-YAGFTVWLSQTEAM--------DENSAKEEARRHVKDGK--------LGY-------SNA  316 (388)
Q Consensus       262 -tGGG~~gav~r~enr~~L-~~g~VVyLd~~~e~--------D~~d~~e~l~~l~~eR~--------~~Y-------~~A  316 (388)
                       -.+|          |-.. ...+.|||.+|.++        ++.+ .+...+...+|+        .+|       .-.
T Consensus        80 grLA~----------Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~-~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiy  148 (179)
T COG1102          80 GRLAG----------WIVREYADLKIWLKAPLEVRAERIAKREGID-VDEALAETVEREESEKKRYKKIYGIDIDDLSIY  148 (179)
T ss_pred             hhhHH----------HHhccccceEEEEeCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCccceee
Confidence             2332          3322 24889999999988        2333 223333333343        233       346


Q ss_pred             cEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          317 DVVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       317 D~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      |++|+++.++++   +|+..+..++.....+
T Consensus       149 DLVinTs~~~~~---~v~~il~~aid~~~~~  176 (179)
T COG1102         149 DLVINTSKWDPE---EVFLILLDAIDALSIK  176 (179)
T ss_pred             EEEEecccCCHH---HHHHHHHHHHHhhccc
Confidence            899999999975   8888888888776544

>PRK13975 thymidylate kinase; Provisional

Probab=99.49  E-value=5.7e-14  Score=127.24  Aligned_cols=148  Identities=16%  Similarity=0.095  Sum_probs=96.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC--CcceechhHHHHH----h------cCchhhhhhccCcHHHHHHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETF----A------KQTIDSWMLAEGSDSVVNGECDVLESLS  253 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~lIE~~----~------g~sI~eif~~~Ge~~FRe~E~~vL~~L~  253 (388)
                      ++.|+|.|++||||||+++.||++|+  +.+.++|..+.+.    .      ..++..+|...+++.|+++|..+..   
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~---   78 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK---   78 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence            47899999999999999999999999  6667776555432    1      1245567888888888876654432   


Q ss_pred             cCCCeEEE-----------ecCCcccccc---cHHHHHhhcCCcEEEEEcCccc-------cc------cCHHHHHHHHH
Q 016486          254 SHVRAVVA-----------TLGGQQGAAA---RADKWQHLYAGFTVWLSQTEAM-------DE------NSAKEEARRHV  306 (388)
Q Consensus       254 ~~~~~VVS-----------tGGG~~gav~---r~enr~~L~~g~VVyLd~~~e~-------D~------~d~~e~l~~l~  306 (388)
                         ..||+           +++|.   ..   ...++..++.+++|||++++++       ..      .+..+++.+.|
T Consensus        79 ---~~vi~DRy~~S~~a~~~~~g~---~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y  152 (196)
T PRK13975         79 ---RDVVCDRYVYSSIAYQSVQGI---DEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKY  152 (196)
T ss_pred             ---CEEEEECchhHHHHHhcccCC---CHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence               23443           34441   21   1122223345899999999987       11      11223455555


Q ss_pred             HHhHh---cccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          307 KDGKL---GYSN-ADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       307 ~eR~~---~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      .++..   +|.. +.++|++++.++   ++|+++|.+.|...+
T Consensus       153 ~~~~~~~~~~~~~~~~~Id~~~~~~---eev~~~I~~~i~~~~  192 (196)
T PRK13975        153 LELANNEKFMPKYGFIVIDTTNKSI---EEVFNEILNKIKDKI  192 (196)
T ss_pred             HHHHhhcccCCcCCEEEEECCCCCH---HHHHHHHHHHHHHhC
Confidence            55543   2333 467788876665   499999999887654

>PRK14530 adenylate kinase; Provisional

Probab=99.45  E-value=1.3e-12  Score=121.47  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=73.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcH---------HHHHHHHHHHHHHh-c
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD---------SVVNGECDVLESLS-S  254 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~---------~FRe~E~~vL~~L~-~  254 (388)
                      .+.+|+|+|+|||||||+|+.||+.+|+++|++|+++++..++++.++....|..         ...+.+..+++... .
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999998876665554333321         22234555555543 3


Q ss_pred             CCCeEEEecCCcccccccHHHHHhhc----CCcEEEEEcCccc
Q 016486          255 HVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAM  293 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~~L~----~g~VVyLd~~~e~  293 (388)
                      ....||. | .    ....+..+.|.    .+++|||++|.+.
T Consensus        82 ~~~~Ild-G-~----pr~~~q~~~l~~~~~~d~vI~Ld~~~~~  118 (215)
T PRK14530         82 ADGFVLD-G-Y----PRNLEQAEYLESITDLDVVLYLDVSEEE  118 (215)
T ss_pred             CCCEEEc-C-C----CCCHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence            3456665 3 2    45555555553    3789999999866

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.42  E-value=1.7e-12  Score=114.66  Aligned_cols=140  Identities=12%  Similarity=0.083  Sum_probs=92.2

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHH-----H-hcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-----F-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~-----~-~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt  262 (388)
                      |+|+|++||||||+++.|++.+|+.++|+|++...     . .|..+   ....++.+++.++..+...+.....+||++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~   77 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPL---NDDDRWPWLQNLNDASTAAAAKNKVGIITC   77 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCC---ChhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            68999999999999999999999999999998432     2 12222   133456777777776666665555568887


Q ss_pred             cCCcccccccHHHHHhhcC-C---cEEEEEcCccc----c---c--cCHHHHHHHHHHH-hHhccccCc-EEEEcCCCCc
Q 016486          263 LGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM----D---E--NSAKEEARRHVKD-GKLGYSNAD-VVVKLQGWDA  327 (388)
Q Consensus       263 GGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~----D---~--~d~~e~l~~l~~e-R~~~Y~~AD-~vV~~d~~s~  327 (388)
                      +      ..++.+++.++. +   .+|||++|.++    .   +  ....+.+...+.+ +.+.+.+++ ++|++++.  
T Consensus        78 t------~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~~~--  149 (163)
T TIGR01313        78 S------ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVDIDQP--  149 (163)
T ss_pred             c------ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECCCC--
Confidence            6      356677776663 2   47999999877    0   1  1123455555543 233344444 44555543  


Q ss_pred             ccHHHHHHHHHHHH
Q 016486          328 DHAKSVAQASLSAL  341 (388)
Q Consensus       328 e~~eeVa~eIl~~L  341 (388)
                        +++++++|...|
T Consensus       150 --~~~~~~~~~~~~  161 (163)
T TIGR01313       150 --LEGVEEDCIAVV  161 (163)
T ss_pred             --HHHHHHHHHHHH
Confidence              458888887765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.40  E-value=8.4e-13  Score=121.39  Aligned_cols=151  Identities=17%  Similarity=0.189  Sum_probs=95.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeE
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV  259 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~V  259 (388)
                      ++..|+|+|++||||||+++.|+..|     +..++|+|.+.....+. +. +..++..+.++.+. ++...+...+..|
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~-~~-~~~~~~~~~~~~l~-~~a~~~~~~G~~V   99 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD-LG-FSDADRKENIRRVG-EVAKLMVDAGLVV   99 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc-CC-cCcccHHHHHHHHH-HHHHHHhhCCCEE
Confidence            57889999999999999999999987     46889999887554431 11 11122223333332 2333444445566


Q ss_pred             EEecCCcccccccHHHHHhhcC-Cc-EEEEEcCccc----cccCH-----HHHHHHHHHHhHhccc--c-CcEEEEcCCC
Q 016486          260 VATLGGQQGAAARADKWQHLYA-GF-TVWLSQTEAM----DENSA-----KEEARRHVKDGKLGYS--N-ADVVVKLQGW  325 (388)
Q Consensus       260 VStGGG~~gav~r~enr~~L~~-g~-VVyLd~~~e~----D~~d~-----~e~l~~l~~eR~~~Y~--~-AD~vV~~d~~  325 (388)
                      |++.... ....+...++++.+ ++ +|||++|.+.    +....     .+.+..++.+|.+ |+  . ||++|++++.
T Consensus       100 I~~~~~~-~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y~~p~~ad~~Idt~~~  177 (198)
T PRK03846        100 LTAFISP-HRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-YEAPESPEIHLDTGEQ  177 (198)
T ss_pred             EEEeCCC-CHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-CCCCCCCCEEEECCCC
Confidence            6433220 01234445556654 66 7999999876    11000     1223345567777 87  6 8999999887


Q ss_pred             CcccHHHHHHHHHHHHHH
Q 016486          326 DADHAKSVAQASLSALKQ  343 (388)
Q Consensus       326 s~e~~eeVa~eIl~~L~~  343 (388)
                      +++   +++++|++.|+.
T Consensus       178 ~~~---~vv~~Il~~l~~  192 (198)
T PRK03846        178 LVT---NLVEQLLDYLRQ  192 (198)
T ss_pred             CHH---HHHHHHHHHHHH
Confidence            754   999999998864

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.38  E-value=4.2e-12  Score=113.85  Aligned_cols=147  Identities=14%  Similarity=0.109  Sum_probs=94.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCCe
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRA  258 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~~  258 (388)
                      ++..|+|+|++||||||+++.|+..|.     +.++|+|.+.+..... +  .+. +..+..++.+. .+.+.+...+ .
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~-~--~~~~~~r~~~~~~~~-~~a~~~~~~g-~   77 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKG-L--GFSKEDRDTNIRRIG-FVANLLTRHG-V   77 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcC-C--CCChhhHHHHHHHHH-HHHHHHHhCC-C
Confidence            577899999999999999999999983     6789999886554321 1  121 22333444433 2222333333 3


Q ss_pred             EEEecCCcccccccHHHHHhhcC----CcEEEEEcCccc----cccCH-----HHHHHHHHHHhHhccc-c-CcEEEEcC
Q 016486          259 VVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM----DENSA-----KEEARRHVKDGKLGYS-N-ADVVVKLQ  323 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~----D~~d~-----~e~l~~l~~eR~~~Y~-~-AD~vV~~d  323 (388)
                      +|.+++.    ......|+.++.    ..+|||++|.++    +....     .+.+..++.+|.++|. . ||++|+++
T Consensus        78 ~vi~~~~----~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~  153 (175)
T PRK00889         78 IVLVSAI----SPYRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTD  153 (175)
T ss_pred             EEEEecC----CCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECC
Confidence            4444433    223455555542    569999999876    11110     1123346678899997 4 89999999


Q ss_pred             CCCcccHHHHHHHHHHHHHH
Q 016486          324 GWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       324 ~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +.++   ++++++|++.|..
T Consensus       154 ~~~~---~~~~~~i~~~l~~  170 (175)
T PRK00889        154 LESL---EESVDKVLQKLEE  170 (175)
T ss_pred             CCCH---HHHHHHHHHHHHH
Confidence            7765   5999999999864

>PRK06762 hypothetical protein; Provisional

Probab=99.33  E-value=1.3e-11  Score=109.32  Aligned_cols=142  Identities=15%  Similarity=0.094  Sum_probs=92.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc--CCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG  263 (388)
                      ++.|+|+|++||||||+++.|++.+  ++.+++.|.+.....+..     ...+......++ .+.+.....+..||..+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~-----~~~~~~~~~~~~-~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVK-----DGPGNLSIDLIE-QLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcccc-----CCCCCcCHHHHH-HHHHHHHhCCCEEEEch
Confidence            4679999999999999999999999  577889998876544221     111111121122 23333334455666655


Q ss_pred             CCcccccccHH---HHHhhcC-----CcEEEEEcCccc--------cc--cCHHHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486          264 GGQQGAAARAD---KWQHLYA-----GFTVWLSQTEAM--------DE--NSAKEEARRHVKDGKLGYSNADVVVKLQGW  325 (388)
Q Consensus       264 GG~~gav~r~e---nr~~L~~-----g~VVyLd~~~e~--------D~--~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~  325 (388)
                      .     .....   .++.|..     ..+|||++|.++        +.  ....+.++.+|++|...|. ++.++++++.
T Consensus        76 ~-----~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~  149 (166)
T PRK06762         76 I-----LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGV-IGETIFTDNL  149 (166)
T ss_pred             h-----hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCC-CCeEEecCCC
Confidence            2     12222   2333321     269999999887        11  2346889999999998763 7788888887


Q ss_pred             CcccHHHHHHHHHHHHH
Q 016486          326 DADHAKSVAQASLSALK  342 (388)
Q Consensus       326 s~e~~eeVa~eIl~~L~  342 (388)
                      ++   ++|+++|+..+.
T Consensus       150 ~~---~~v~~~i~~~~~  163 (166)
T PRK06762        150 SL---KDIFDAILTDIG  163 (166)
T ss_pred             CH---HHHHHHHHHHhc
Confidence            65   499999998764

>PRK06217 hypothetical protein; Validated

Probab=99.32  E-value=1.9e-11  Score=111.04  Aligned_cols=94  Identities=15%  Similarity=0.044  Sum_probs=64.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|++||||||+|+.||+.||++++|+|+++++..+.+    +...+...++  +..+++.+......||. |+. 
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~vi~-G~~-   73 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP----FTTKRPPEER--LRLLLEDLRPREGWVLS-GSA-   73 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC----ccccCCHHHH--HHHHHHHHhcCCCEEEE-ccH-
Confidence            569999999999999999999999999999999998654432    1112333332  34555555555567777 322 


Q ss_pred             ccccccHHHHHhhc-CCcEEEEEcCccc
Q 016486          267 QGAAARADKWQHLY-AGFTVWLSQTEAM  293 (388)
Q Consensus       267 ~gav~r~enr~~L~-~g~VVyLd~~~e~  293 (388)
                          .. .....+. .+.+|||++|.++
T Consensus        74 ----~~-~~~~~~~~~d~~i~Ld~~~~~   96 (183)
T PRK06217         74 ----LG-WGDPLEPLFDLVVFLTIPPEL   96 (183)
T ss_pred             ----HH-HHHHHHhhCCEEEEEECCHHH
Confidence                21 1112222 3889999999887

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.32  E-value=3.1e-11  Score=106.27  Aligned_cols=142  Identities=21%  Similarity=0.295  Sum_probs=84.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhh--ccCcHHHHHHHHHHHHHHh-cCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWML--AEGSDSVVNGECDVLESLS-SHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~--~~Ge~~FRe~E~~vL~~L~-~~~~~VV  260 (388)
                      +.|+|.|++||||||+|+.||+.||++++|.|+++.+.+   |.++..+..  .......+.+...+ ..+. ..+.+||
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~Vi   79 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRI-HEIALKEKNVVL   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHH-HHHHhcCCCEEE
Confidence            369999999999999999999999999999988876654   344443321  11222222222223 3333 4445565


Q ss_pred             EecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccC---HHHHHHHHHHHhHhcc-----------ccCcE
Q 016486          261 ATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENS---AKEEARRHVKDGKLGY-----------SNADV  318 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d---~~e~l~~l~~eR~~~Y-----------~~AD~  318 (388)
                       .|.+. +...+      -...++|||++|.+.        ++.+   ..+.+.+.-..|...|           ...|+
T Consensus        80 -~g~~~-~~~~~------~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl  151 (171)
T TIGR02173        80 -ESRLA-GWIVR------EYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDL  151 (171)
T ss_pred             -Eeccc-ceeec------CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccE
Confidence             34220 01110      013589999999887        1222   2223333333343333           22589


Q ss_pred             EEEcCCCCcccHHHHHHHHHHHH
Q 016486          319 VVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       319 vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      +|+++..+++   + ++.|...+
T Consensus       152 ~i~t~~~~~~---~-~~~i~~~~  170 (171)
T TIGR02173       152 VINTSNWDPN---N-VDIILDAL  170 (171)
T ss_pred             EEECCCCCHH---H-HHHHHHHh
Confidence            9999999875   7 77776654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.30  E-value=1.9e-11  Score=109.60  Aligned_cols=144  Identities=16%  Similarity=0.118  Sum_probs=83.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc----cee------------------chhHHHHHhcCchhhhhhccCcH-HHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT----PLS------------------TKELLETFAKQTIDSWMLAEGSD-SVV  242 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~----fID------------------~D~lIE~~~g~sI~eif~~~Ge~-~FR  242 (388)
                      +..|+|+|++||||||+++.|+..++..    |+.                  .+++........+..++...+.. ...
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            3568999999999999999999988632    221                  11111111111122111111100 011


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-------c-ccCHHHHHHHHHHHhHhccc
Q 016486          243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------D-ENSAKEEARRHVKDGKLGYS  314 (388)
Q Consensus       243 e~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D-~~d~~e~l~~l~~eR~~~Y~  314 (388)
                          ..+......+..||++|++    ......++.+....+|||+++.+.       . ..+ .+.+.+++ .|...|.
T Consensus        81 ----~~i~~~~~~g~~vv~~g~~----~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~-~~~~~~rl-~~~~~~~  150 (179)
T TIGR02322        81 ----AEIDQWLEAGDVVVVNGSR----AVLPEARQRYPNLLVVNITASPDVLAQRLAARGRES-REEIEERL-ARSARFA  150 (179)
T ss_pred             ----HHHHHHHhcCCEEEEECCH----HHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCC-HHHHHHHH-HHHhhcc
Confidence                1122333345678888876    344556665556789999999877       1 223 35566666 4667775


Q ss_pred             --cCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          315 --NADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       315 --~AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                        .+|+++..+..+   +++++.+|.+.+.
T Consensus       151 ~~~~~~~vi~~~~~---~ee~~~~i~~~l~  177 (179)
T TIGR02322       151 AAPADVTTIDNSGS---LEVAGETLLRLLR  177 (179)
T ss_pred             cccCCEEEEeCCCC---HHHHHHHHHHHHc
Confidence              488775544444   4588888887765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK01184 hypothetical protein; Provisional

Probab=99.29  E-value=8.7e-11  Score=105.95  Aligned_cols=148  Identities=9%  Similarity=0.036  Sum_probs=85.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhccCcHHHHHHHH--------HHHHHHhc-CC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGEC--------DVLESLSS-HV  256 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~~Ge~~FRe~E~--------~vL~~L~~-~~  256 (388)
                      +.|+|+|+|||||||+++ +++.+|++++++|+++.+.. +..+..+....|+..++..+.        .+...+.. ..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD   80 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence            468999999999999998 78999999999988877664 222332333333333322221        11222222 23


Q ss_pred             CeEEEecCCcccccccHHHHHh----hc-CCcEEEEEcCccc--------cc-cC--HHHHHHHHHHHh-----Hhcccc
Q 016486          257 RAVVATLGGQQGAAARADKWQH----LY-AGFTVWLSQTEAM--------DE-NS--AKEEARRHVKDG-----KLGYSN  315 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~----L~-~g~VVyLd~~~e~--------D~-~d--~~e~l~~l~~eR-----~~~Y~~  315 (388)
                      ..||..|      .......+.    +. ...+|||++|.+.        +. .+  ..+.+.++.+..     ...+..
T Consensus        81 ~~vvidg------~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~  154 (184)
T PRK01184         81 EVVVIDG------VRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIAL  154 (184)
T ss_pred             CcEEEeC------CCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHh
Confidence            4566555      122222333    32 2479999999987        11 11  134444444332     124566


Q ss_pred             CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          316 ADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       316 AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      ||++|++++ +   .+++..++...++.+.
T Consensus       155 ad~vI~N~~-~---~~~l~~~v~~~~~~~~  180 (184)
T PRK01184        155 ADYMIVNDS-T---LEEFRARVRKLLERIL  180 (184)
T ss_pred             cCEEEeCCC-C---HHHHHHHHHHHHHHHh
Confidence            999998665 3   3477777777666543

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.25  E-value=3.5e-12  Score=128.09  Aligned_cols=91  Identities=19%  Similarity=0.174  Sum_probs=73.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCc------ceechhHH-----HHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCC
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYT------PLSTKELL-----ETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~------fID~D~lI-----E~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~  257 (388)
                      ++|+|+|||||||+|+.|++.|+..      ++|.|++|     +...|++++++|     ..||+.    +.++..  +
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-----k~~R~~----i~~~le--~   70 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-----KQFRQE----LLKYLE--H   70 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-----HHHHHH----HHHHHH--H
Confidence            6899999999999999999998744      99999999     888999999988     578843    333332  5


Q ss_pred             eEEEecCCcccccc----------cHHHHHhhcC-CcEEEEEcCccc
Q 016486          258 AVVATLGGQQGAAA----------RADKWQHLYA-GFTVWLSQTEAM  293 (388)
Q Consensus       258 ~VVStGGG~~gav~----------r~enr~~L~~-g~VVyLd~~~e~  293 (388)
                      .|+|+|||   +.+          .++|+..|+. |++|||+++.+.
T Consensus        71 ~v~a~~~g---~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~  114 (340)
T TIGR03575        71 FLVAVING---SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQ  114 (340)
T ss_pred             HHHHhcCc---ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHH
Confidence            68899998   566          4455588875 999999999865

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.23  E-value=3.1e-11  Score=130.23  Aligned_cols=185  Identities=14%  Similarity=0.126  Sum_probs=116.0

Q ss_pred             eeecchhHHHHHhh---------------ccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          145 IWYIDEDQLVINLK---------------KQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       145 iw~~d~~~~v~~~~---------------~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ||.+||++++|.+-               ...+.+.||+..+.+.+|..  .+.-+...|.|.|++||||||+|+.||++
T Consensus       388 v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~ksyP~F~~~l~~Lg~--~~~~~~~~i~i~g~~~~gks~~~~~l~~~  465 (661)
T PRK11860        388 IHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPDYFEALFSVAQ--ADADRVPVICIDGPTASGKGTVAARVAEA  465 (661)
T ss_pred             ccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeecCCCChHHHHHHhcC--CcccCcceEEeeCCCCCCHHHHHHHHHHH
Confidence            89999999998882               24478999999676667662  22223568999999999999999999999


Q ss_pred             cCCcceechhHHHHHh------cCchhh---hhh---c------------c---------------------CcHHHHHH
Q 016486          210 LGYTPLSTKELLETFA------KQTIDS---WML---A------------E---------------------GSDSVVNG  244 (388)
Q Consensus       210 LG~~fID~D~lIE~~~------g~sI~e---if~---~------------~---------------------Ge~~FRe~  244 (388)
                      ||++|+|+|.+....+      |.++.+   +.+   .            +                     --..+|+.
T Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~  545 (661)
T PRK11860        466 LGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAA  545 (661)
T ss_pred             hCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHH
Confidence            9999999999977652      222211   100   0            0                     01122322


Q ss_pred             HHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCcccc-----------c-cCHHHHHHHHHHHhHh
Q 016486          245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMD-----------E-NSAKEEARRHVKDGKL  311 (388)
Q Consensus       245 E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~D-----------~-~d~~e~l~~l~~eR~~  311 (388)
                      -....+++....+ ||.-|=-        -.+-.+. ..+-|||++++++.           + ....+++.+-+.+|..
T Consensus       546 l~~~qr~~~~~~~-~v~eGRd--------igtvv~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~  616 (661)
T PRK11860        546 LLALQRSFRRLPG-LVADGRD--------MGTVIFPDAALKVFLTASAEARAERRYKQLISKGISANIADLLADLEARDA  616 (661)
T ss_pred             HHHHHHHHhhCCC-EEEECCC--------CccEECCCCCeEEEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhH
Confidence            2222333333233 4544422        1122222 47899999999881           1 1124445555555542


Q ss_pred             c----c----cc--CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          312 G----Y----SN--ADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       312 ~----Y----~~--AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      .    +    ..  -+++|+++.++.+   +|+++|++.+++
T Consensus       617 ~d~~R~~~pl~~~~da~~idts~~~~~---~v~~~i~~~i~~  655 (661)
T PRK11860        617 RDTQRSVAPLKPAQDALLLDNSDLTIE---QAVAQVLDWWQE  655 (661)
T ss_pred             HhhcCCCCCCccCCCEEEEECCCCCHH---HHHHHHHHHHHh
Confidence            1    1    12  2378999999865   999999998864

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.22  E-value=2.2e-10  Score=102.42  Aligned_cols=148  Identities=14%  Similarity=0.174  Sum_probs=84.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cC-----chhhhhhccCc-----HHHHHHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQ-----TIDSWMLAEGS-----DSVVNGECDVLESLSS  254 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~-----sI~eif~~~Ge-----~~FRe~E~~vL~~L~~  254 (388)
                      ...|+|+|++||||||+++.||+.+|+.++++|+++.+.. +.     .+..++.. |.     ..+..++..+...+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcccCc
Confidence            4579999999999999999999999999999998876652 21     23333332 21     1222222233322322


Q ss_pred             CCCeEEEecCCcccccccHHHHHhh----c-CCcEEEEEcCccc--c-----c------cC----HHHHHHHHHHHhHh-
Q 016486          255 HVRAVVATLGGQQGAAARADKWQHL----Y-AGFTVWLSQTEAM--D-----E------NS----AKEEARRHVKDGKL-  311 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~~L----~-~g~VVyLd~~~e~--D-----~------~d----~~e~l~~l~~eR~~-  311 (388)
                       +..||..|-     .........+    . ..++|||++|.+.  .     .      .+    ..+++...++++.+ 
T Consensus        82 -~~~~i~dg~-----~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~  155 (188)
T TIGR01360        82 -SKGFLIDGY-----PREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPV  155 (188)
T ss_pred             -CCeEEEeCC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHH
Confidence             344555552     2222212222    2 3679999999877  0     0      11    22344444555553 


Q ss_pred             --cccc-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          312 --GYSN-ADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       312 --~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                        +|.. ..+ +.+++..+  +++|.++|...|+.
T Consensus       156 ~~~y~~~~~~-~~id~~~~--~~~v~~~i~~~l~~  187 (188)
T TIGR01360       156 IAYYETKGKL-RKINAEGT--VDDVFLQVCTAIDK  187 (188)
T ss_pred             HHHHHhCCCE-EEEECCCC--HHHHHHHHHHHHhc
Confidence              3554 444 23333222  56899988888764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.21  E-value=2.4e-10  Score=102.48  Aligned_cols=145  Identities=14%  Similarity=0.204  Sum_probs=86.1

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCcHHHHHHHHHHHHHHhcC--CCeEE
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGSDSVVNGECDVLESLSSH--VRAVV  260 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge~~FRe~E~~vL~~L~~~--~~~VV  260 (388)
                      |+|+|+|||||||+|+.||+++|+.++++++++.+....      .+.+++ ..|+..-.++...++++....  .+.||
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            899999999999999999999999999998888766432      133333 345555555555565554321  23455


Q ss_pred             EecCCcccccccHHHHH----hhc----CCcEEEEEcCccc--------cc-----cCHHHHHHHHHHHh-------Hhc
Q 016486          261 ATLGGQQGAAARADKWQ----HLY----AGFTVWLSQTEAM--------DE-----NSAKEEARRHVKDG-------KLG  312 (388)
Q Consensus       261 StGGG~~gav~r~enr~----~L~----~g~VVyLd~~~e~--------D~-----~d~~e~l~~l~~eR-------~~~  312 (388)
                      -.|-     ..+.+.+.    .+.    ..++|||++|.++        ..     .+..+.++++++..       ..+
T Consensus        81 lDg~-----p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~  155 (183)
T TIGR01359        81 IDGF-----PRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEH  155 (183)
T ss_pred             EeCC-----CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4451     33333332    222    2579999999987        11     12234444444322       123


Q ss_pred             cccCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          313 YSNADVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       313 Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      |...+.++.+++..+  +++|.++|.+.+
T Consensus       156 ~~~~~~~~~Id~~~~--~~~v~~~i~~~l  182 (183)
T TIGR01359       156 YENKGKVKEINAEGS--VEEVFEDVEKIF  182 (183)
T ss_pred             HHhCCCEEEEECCCC--HHHHHHHHHHHh
Confidence            455554444444332  457777776654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.21  E-value=4.2e-12  Score=136.98  Aligned_cols=133  Identities=11%  Similarity=0.106  Sum_probs=102.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchh-hhhhccCcHHHHHHHHHHHHHHhc-CCCeEE
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSVVNGECDVLESLSS-HVRAVV  260 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~-eif~~~Ge~~FRe~E~~vL~~L~~-~~~~VV  260 (388)
                      .+....|+++|+||+||||||+.|++.|+|.++|+|.++...+++.+. +.+...|+..|+.+|.+++..+.. ..+.|+
T Consensus       212 ~~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~  291 (664)
T PTZ00322        212 MMGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFIC  291 (664)
T ss_pred             cccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            344568999999999999999999999999999999999988888776 677778888999999888877764 345777


Q ss_pred             EecCCcccccccHHHHHhhc---------C-C-----cEEEEEcCcccc--------------ccC----HHHHHHHHHH
Q 016486          261 ATLGGQQGAAARADKWQHLY---------A-G-----FTVWLSQTEAMD--------------ENS----AKEEARRHVK  307 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~---------~-g-----~VVyLd~~~e~D--------------~~d----~~e~l~~l~~  307 (388)
                      ++||+   +++...|+..++         . +     .||||++ ...|              .++    ..+++.++++
T Consensus       292 ~~Ggv---aI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~-vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~  367 (664)
T PTZ00322        292 KTDGV---AVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV-VNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIE  367 (664)
T ss_pred             cCCCE---EEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE-eCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            77776   677665443332         1 2     5999998 4331              122    4577889999


Q ss_pred             HhHhccccCcEE
Q 016486          308 DGKLGYSNADVV  319 (388)
Q Consensus       308 eR~~~Y~~AD~v  319 (388)
                      +|++.|+.++..
T Consensus       368 ~~~~~Ye~~~~~  379 (664)
T PTZ00322        368 QLEAVYKSLNPV  379 (664)
T ss_pred             HHHhhcccCCcc
Confidence            999999987643

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.21  E-value=1.1e-10  Score=110.72  Aligned_cols=146  Identities=14%  Similarity=0.099  Sum_probs=91.6

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG  263 (388)
                      |+|+|+|||||||+|+.||+.|+     +.+++.|.+.+...      .+...++..+++.+..+++.....+..||..+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~   75 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP------VWKEKYEEFIRDSTLYLIKTALKNKYSVIVDD   75 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence            89999999999999999999883     34666776654331      12234667788877777777776666788777


Q ss_pred             CCcccccccHHHHHhhcC-C---cEEEEEcCccc--------cccCHHHHHHHHHHH---hHhcc--ccCcEEEEcCCCC
Q 016486          264 GGQQGAAARADKWQHLYA-G---FTVWLSQTEAM--------DENSAKEEARRHVKD---GKLGY--SNADVVVKLQGWD  326 (388)
Q Consensus       264 GG~~gav~r~enr~~L~~-g---~VVyLd~~~e~--------D~~d~~e~l~~l~~e---R~~~Y--~~AD~vV~~d~~s  326 (388)
                      +... .-.+.+.+...+. +   .+|||++|.+.        +...+.+.+.+++..   ....|  ..++++|+.+...
T Consensus        76 ~~~~-~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~  154 (249)
T TIGR03574        76 TNYY-NSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKI  154 (249)
T ss_pred             cchH-HHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCC
Confidence            6510 0112233333332 3   68999999877        111223344444443   33344  3477888776432


Q ss_pred             cccHHHHHHHHHHHHHH
Q 016486          327 ADHAKSVAQASLSALKQ  343 (388)
Q Consensus       327 ~e~~eeVa~eIl~~L~~  343 (388)
                      +  ++++++.|+..+..
T Consensus       155 ~--~~ei~~~i~~~~~~  169 (249)
T TIGR03574       155 D--YNEILEEILEISEN  169 (249)
T ss_pred             C--HHHHHHHHHHHhhc
Confidence            2  45899888887654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.18  E-value=2.9e-11  Score=127.16  Aligned_cols=147  Identities=12%  Similarity=0.091  Sum_probs=96.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhh------hh-------h---ccC-----
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDS------WM-------L---AEG-----  237 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~e------if-------~---~~G-----  237 (388)
                      ++..|.|.|++||||||+++.||+.||+.++|+|.+....+      |.+..+      .+       .   ..|     
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~  362 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI  362 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence            56889999999999999999999999999999999876642      211111      00       0   000     


Q ss_pred             -----------------------cHHHHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc
Q 016486          238 -----------------------SDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM  293 (388)
Q Consensus       238 -----------------------e~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~  293 (388)
                                             -..+|+.-.+..+++.+.++ ||.-|=-        ..+-.+. ..+.|||++++++
T Consensus       363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRD--------igtvV~P~AdlKIfL~As~ev  433 (512)
T PRK13477        363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRD--------IGTHVFPDAELKIFLTASVEE  433 (512)
T ss_pred             CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEccc--------ceeEEcCCCCEEEEEECCHHH
Confidence                                   01222222222233333223 3333321        1111222 3789999999988


Q ss_pred             -------c----c--cCHHHHHHHHHHHhH---------hcccc-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          294 -------D----E--NSAKEEARRHVKDGK---------LGYSN-ADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       294 -------D----~--~d~~e~l~~l~~eR~---------~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                             +    +  ....+.+.+.+.+|.         |+|.. ++++|++++++++   +|+++|++.++.
T Consensus       434 Ra~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsie---eVv~~Il~~i~~  503 (512)
T PRK13477        434 RARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIE---EVVDKIIDLYRD  503 (512)
T ss_pred             HHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHH---HHHHHHHHHHHH
Confidence                   1    1  122678999999999         99998 6799999999865   999999999875

>PRK13808 adenylate kinase; Provisional

Probab=99.17  E-value=5.5e-10  Score=112.07  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHH-HHHhc---CC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS---HV  256 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL-~~L~~---~~  256 (388)
                      ++|+|+|+|||||||+++.||+.+|+.+|++|+++.+..      |..+.+++.. |.-.-.++-..++ +.|..   ..
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~   79 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAAN   79 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccC
Confidence            469999999999999999999999999999999997653      3334445433 2211111212222 22222   22


Q ss_pred             CeEEEecCCcccccccHHHHH----hh-----cCCcEEEEEcCccc-------c------------ccCHHHHHHHHHHH
Q 016486          257 RAVVATLGGQQGAAARADKWQ----HL-----YAGFTVWLSQTEAM-------D------------ENSAKEEARRHVKD  308 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~----~L-----~~g~VVyLd~~~e~-------D------------~~d~~e~l~~l~~e  308 (388)
                      ++||. |  +   ..+.+..+    .|     ...++|||++|.++       .            .++..+.+.+++..
T Consensus        80 G~ILD-G--F---PRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~  153 (333)
T PRK13808         80 GFILD-G--F---PRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLAS  153 (333)
T ss_pred             CEEEe-C--C---CCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHH
Confidence            34443 3  2   33322222    12     23789999999876       0            01223344444432


Q ss_pred             ---h----HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhcCCC
Q 016486          309 ---G----KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKK  350 (388)
Q Consensus       309 ---R----~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~  350 (388)
                         .    ..+|.+.+.++.+|+..+  +++|.++|...|..+...+.+
T Consensus       154 Y~~~t~PLl~~Y~e~~~lv~IDa~~s--iEEV~eeI~~~L~~~~~~~~~  200 (333)
T PRK13808        154 YRAQTEPLVHYYSEKRKLLTVDGMMT--IDEVTREIGRVLAAVGAANAK  200 (333)
T ss_pred             HHHHhHHHHHHhhccCcEEEEECCCC--HHHHHHHHHHHHHHHhCCCcc
Confidence               2    245776666777887654  679999999999988876543

>PRK02496 adk adenylate kinase; Provisional

Probab=99.17  E-value=4.6e-10  Score=101.39  Aligned_cols=150  Identities=17%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--c----hhhhhhccCcHHHHHHHHHHHHH-Hhc--CCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--T----IDSWMLAEGSDSVVNGECDVLES-LSS--HVR  257 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--s----I~eif~~~Ge~~FRe~E~~vL~~-L~~--~~~  257 (388)
                      ++|+|+|+|||||||+++.||+.+|++++++|+++.+....  .    +..++ ..|+....++...++.. +..  ..+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence            56999999999999999999999999999999998775421  1    22222 23544444444444443 322  123


Q ss_pred             eEEEecCCcccccccHHHHH-hh---c--CCcEEEEEcCccc---------cccCHHHHHHHHHHHhHh-------cccc
Q 016486          258 AVVATLGGQQGAAARADKWQ-HL---Y--AGFTVWLSQTEAM---------DENSAKEEARRHVKDGKL-------GYSN  315 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~-~L---~--~g~VVyLd~~~e~---------D~~d~~e~l~~l~~eR~~-------~Y~~  315 (388)
                      .+|-.|-..  .......+. .+   .  ...+|||+++.+.         ...+..+.+.++++.-+.       +|+.
T Consensus        81 g~vldGfPr--~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~  158 (184)
T PRK02496         81 GWILDGFPR--KVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD  158 (184)
T ss_pred             CEEEeCCCC--CHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455556431  111112222 12   1  2679999999877         012233444444433222       5544


Q ss_pred             CcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          316 ADVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       316 AD~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      -...+.+++..+  +++|.++|...|
T Consensus       159 ~~~~~~Ida~~~--~~~V~~~i~~~l  182 (184)
T PRK02496        159 RQKLLTIDGNQS--VEAVTTELKAAL  182 (184)
T ss_pred             cCCEEEEECCCC--HHHHHHHHHHHh
Confidence            333455555433  568888887765

>PLN02674 adenylate kinase

Probab=99.16  E-value=7.1e-10  Score=106.93  Aligned_cols=104  Identities=10%  Similarity=0.023  Sum_probs=74.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcCC-
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHV-  256 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~-  256 (388)
                      ...++|+|+|+|||||+|+|+.||+.+|+.+|++++++++.      .|+.+.+++. .|+....++...++.+..... 
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~  107 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPS  107 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcC
Confidence            34578999999999999999999999999999999999876      3455677776 699999888888776654321 


Q ss_pred             --CeEEEecCCcccccccHHHHH----hhc-----CCcEEEEEcCccc
Q 016486          257 --RAVVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAM  293 (388)
Q Consensus       257 --~~VVStGGG~~gav~r~enr~----~L~-----~g~VVyLd~~~e~  293 (388)
                        ..+|-.|  +   ......-+    .|.     -..||+|++|.++
T Consensus       108 ~~~g~ilDG--f---PRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~  150 (244)
T PLN02674        108 CQKGFILDG--F---PRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAI  150 (244)
T ss_pred             cCCcEEEeC--C---CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence              2333333  1   32222222    222     1569999998765

>PRK14531 adenylate kinase; Provisional

Probab=99.13  E-value=1.1e-09  Score=99.68  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      +++|+|+|+|||||||+++.||+.+|+.+|++++++.+.
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~   40 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE   40 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence            357999999999999999999999999999998888765

>PRK06547 hypothetical protein; Provisional

Probab=99.13  E-value=9.5e-11  Score=106.92  Aligned_cols=105  Identities=19%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc-----hhhhhhccCcHHHHHHH--HHHHHH--HhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-----IDSWMLAEGSDSVVNGE--CDVLES--LSSH  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s-----I~eif~~~Ge~~FRe~E--~~vL~~--L~~~  255 (388)
                      ....|.|.|++||||||+++.||+.++++++++|+++....+.+     +.+.+.+.|+..++...  ......  ....
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~   93 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP   93 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence            34567778999999999999999999999999999886543332     33444434544332100  000000  1122


Q ss_pred             CCeEEEecCCcccccccHHHHHhhcC-C--cEEEEEcCccc
Q 016486          256 VRAVVATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAM  293 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~L~~-g--~VVyLd~~~e~  293 (388)
                      ...||..|+|    ...+++++.+.+ +  ++|||++|.++
T Consensus        94 ~~vVIvEG~~----al~~~~r~~~d~~g~v~~I~ld~~~~v  130 (172)
T PRK06547         94 GRRLIIEGVG----SLTAANVALASLLGEVLTVWLDGPEAL  130 (172)
T ss_pred             CCeEEEEehh----hccHHHHHHhccCCCEEEEEEECCHHH
Confidence            3578888887    347788888754 4  69999999876

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.12  E-value=4.9e-10  Score=97.54  Aligned_cols=108  Identities=17%  Similarity=0.028  Sum_probs=71.0

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc--Cchhhhh-hccCcHHHHHHHHHHHHHHh-cCCCeEEEecC
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK--QTIDSWM-LAEGSDSVVNGECDVLESLS-SHVRAVVATLG  264 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g--~sI~eif-~~~Ge~~FRe~E~~vL~~L~-~~~~~VVStGG  264 (388)
                      |+|+|++||||||+|+.|++.++..++|.|.++.....  +.....+ ...++.+++.+...+...+. ....+|+.++.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~~   81 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACSA   81 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEecc
Confidence            78999999999999999999999999999999864211  0011111 22356677777655555553 44456666553


Q ss_pred             CcccccccHHHHHhhcC------CcEEEEEcCccccccCHHHHHHHHHHHhH
Q 016486          265 GQQGAAARADKWQHLYA------GFTVWLSQTEAMDENSAKEEARRHVKDGK  310 (388)
Q Consensus       265 G~~gav~r~enr~~L~~------g~VVyLd~~~e~D~~d~~e~l~~l~~eR~  310 (388)
                            .....++.++.      -.+|||+++.+        .+.++...|.
T Consensus        82 ------~~~~~r~~~~~~~~~~~~~~v~l~~~~~--------~~~~R~~~R~  119 (150)
T cd02021          82 ------LKRIYRDILRGGAANPRVRFVHLDGPRE--------VLAERLAARK  119 (150)
T ss_pred             ------ccHHHHHHHHhcCCCCCEEEEEEECCHH--------HHHHHHHhcc
Confidence                  33455554442      24999998863        4566666664

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.10  E-value=1.3e-09  Score=98.24  Aligned_cols=142  Identities=15%  Similarity=0.046  Sum_probs=79.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcce--echhHHHHHhcCchh---hh-hhc----cCcHHH---HHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLETFAKQTID---SW-MLA----EGSDSV---VNGECDVLES  251 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI--D~D~lIE~~~g~sI~---ei-f~~----~Ge~~F---Re~E~~vL~~  251 (388)
                      +++.|+|+|++||||||+++.|++.++.+++  +.|.++...-+....   .+ +..    .-++.+   ...-...+..
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~   80 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA   80 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999987765  789887653221100   00 111    011121   1122233444


Q ss_pred             HhcCCCeEEEecCCcccccccHHHHH---hhcC--CcEEEEEcCccccccCHHHHHHHHHHHhH-----------hc-c-
Q 016486          252 LSSHVRAVVATLGGQQGAAARADKWQ---HLYA--GFTVWLSQTEAMDENSAKEEARRHVKDGK-----------LG-Y-  313 (388)
Q Consensus       252 L~~~~~~VVStGGG~~gav~r~enr~---~L~~--g~VVyLd~~~e~D~~d~~e~l~~l~~eR~-----------~~-Y-  313 (388)
                      +...+..||....-    ..++..++   .+..  -..|||++|.++        +.++..+|.           .. + 
T Consensus        81 ~l~~G~~VIvD~~~----~~~~~~r~~~~~~~~~~~~~v~l~~~~~~--------l~~R~~~R~~~~~~~~~~~~~~~~~  148 (175)
T cd00227          81 MARAGANVIADDVF----LGRAALQDCWRSFVGLDVLWVGVRCPGEV--------AEGRETARGDRVPGQARKQARVVHA  148 (175)
T ss_pred             HHhCCCcEEEeeec----cCCHHHHHHHHHhcCCCEEEEEEECCHHH--------HHHHHHhcCCccchHHHHHHHHhcC
Confidence            55545444443311    11233333   2322  358888888754        112222121           11 1 


Q ss_pred             -ccCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          314 -SNADVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       314 -~~AD~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                       ...|++|++++.+++   +++++|++.|
T Consensus       149 ~~~~dl~iDts~~s~~---e~a~~i~~~l  174 (175)
T cd00227         149 GVEYDLEVDTTHKTPI---ECARAIAARV  174 (175)
T ss_pred             CCcceEEEECCCCCHH---HHHHHHHHhc
Confidence             225899999987754   8999988876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.08  E-value=1.9e-09  Score=100.28  Aligned_cols=100  Identities=15%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHH-HHhc---CC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLE-SLSS---HV  256 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~-~L~~---~~  256 (388)
                      ++|+|+|+|||||||+++.||+.+|+.++++++++.+...      ..+.+++.. |.....++...++. .+..   ..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~-g~~~p~~~~~~~i~~~l~~~~~~~   79 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDA-GELVPDEIVIGLVKERLAQPDCKN   79 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhccCccC
Confidence            4699999999999999999999999999999999876532      234444442 44333333333333 3332   12


Q ss_pred             CeEEEecCCcccccccHHHHHhh----c-----CCcEEEEEcCccc
Q 016486          257 RAVVATLGGQQGAAARADKWQHL----Y-----AGFTVWLSQTEAM  293 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~L----~-----~g~VVyLd~~~e~  293 (388)
                      ++||. | .    .......+.|    .     ...+|+|+++.+.
T Consensus        80 g~VlD-G-f----Pr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~  119 (215)
T PRK00279         80 GFLLD-G-F----PRTIPQAEALDEMLKELGIKLDAVIEIDVPDEE  119 (215)
T ss_pred             CEEEe-c-C----CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHH
Confidence            34554 4 1    3333333333    2     1479999999865

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.08  E-value=6.8e-10  Score=100.47  Aligned_cols=147  Identities=14%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~  258 (388)
                      .++..|+|+|.+||||||+++.|+..+   |  ..++|+|.+...+.+. +. +-.+.....++.+ ..+...+...+..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~-~~-~~~~~~~~~~~~~-~~~~~~~~~~G~~   92 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD-LG-FSEEDRKENIRRI-GEVAKLFVRNGII   92 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccc-cC-CCHHHHHHHHHHH-HHHHHHHHcCCCE
Confidence            357899999999999999999999998   3  5688999876544321 11 0011122333333 2233444455555


Q ss_pred             EEEecCCcccccccHHHHHhhc----C--CcEEEEEcCccc----cccCH-----HHHHHHHHHHhHhccc-c-CcEEEE
Q 016486          259 VVATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAM----DENSA-----KEEARRHVKDGKLGYS-N-ADVVVK  321 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L~----~--g~VVyLd~~~e~----D~~d~-----~e~l~~l~~eR~~~Y~-~-AD~vV~  321 (388)
                      ||....     ......++.++    .  -++|||++|.+.    +....     .+.+..+...|.++|. . ||++|+
T Consensus        93 VI~d~~-----~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Id  167 (184)
T TIGR00455        93 VITSFI-----SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD  167 (184)
T ss_pred             EEEecC-----CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEE
Confidence            554331     23344444443    2  258999999876    11000     1122234445666664 4 999999


Q ss_pred             cCCCCcccHHHHHHHHHHHH
Q 016486          322 LQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~L  341 (388)
                      ++..+++   +++++|+..|
T Consensus       168 t~~~~~~---~~~~~i~~~l  184 (184)
T TIGR00455       168 TDQNDRE---ECVGQIIEKL  184 (184)
T ss_pred             CCCCCHH---HHHHHHHHhC
Confidence            9987654   8888887653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK08233 hypothetical protein; Provisional

Probab=99.08  E-value=1.1e-09  Score=97.28  Aligned_cols=148  Identities=14%  Similarity=0.131  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-CcceechhHHHHHhcCchhhhhhccCcH----HHHHHHHHHHHHHhcCC--C
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLAEGSD----SVVNGECDVLESLSSHV--R  257 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-~~fID~D~lIE~~~g~sI~eif~~~Ge~----~FRe~E~~vL~~L~~~~--~  257 (388)
                      ++..|+|.|.+||||||+++.||+.|+ ...+-.|.+........+.+|... |..    ....+ .+.++.+....  .
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~~~~~~   79 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDK-GANYSEWVLTPL-IKDIQELIAKSNVD   79 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhc-cCChhhhhhHHH-HHHHHHHHcCCCce
Confidence            457899999999999999999999996 444444444221111122233221 111    11111 12233333333  4


Q ss_pred             eEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------c-----ccCHHHHHHHHHHHhHhcccc--------C
Q 016486          258 AVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------D-----ENSAKEEARRHVKDGKLGYSN--------A  316 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D-----~~d~~e~l~~l~~eR~~~Y~~--------A  316 (388)
                      +||..|..   ....++.+..  ...+|||++|.++        +     .++..+.+...+..+++.|..        +
T Consensus        80 ~vivd~~~---~~~~~~~~~~--~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  154 (182)
T PRK08233         80 YIIVDYPF---AYLNSEMRQF--IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNA  154 (182)
T ss_pred             EEEEeeeh---hhccHHHHHH--cCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCC
Confidence            56654422   1222222221  2799999999987        1     112334566666666776643        5


Q ss_pred             cEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          317 DVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       317 D~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +++|+.+ .+   +++++++|...|..
T Consensus       155 ~~vId~~-~~---~e~i~~~i~~~l~~  177 (182)
T PRK08233        155 DIVLDGA-LS---VEEIINQIEEELYR  177 (182)
T ss_pred             eEEEcCC-CC---HHHHHHHHHHHHHh
Confidence            6666533 22   56888888888764

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.02  E-value=1.2e-08  Score=93.05  Aligned_cols=153  Identities=10%  Similarity=0.064  Sum_probs=85.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh--cCchhhhhhccCc-HHHHHHHHHHHHHHhcCCCeEE
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQTIDSWMLAEGS-DSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~--g~sI~eif~~~Ge-~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      +.|..|+|+|++||||||+++.|+..++..++|+|.+.....  .+...-.+..... .+...+...+...+......+|
T Consensus         1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i   80 (176)
T PRK09825          1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFI   80 (176)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEE
Confidence            357889999999999999999999999999999998643211  0001111222111 2233333322222222233445


Q ss_pred             EecCCcccccccHHHHHhhcC-C---cEEEEEcCccc--c------c-cCHHHHHHHHHHHhHhcccc-Cc-EEEEcCCC
Q 016486          261 ATLGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM--D------E-NSAKEEARRHVKDGKLGYSN-AD-VVVKLQGW  325 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~--D------~-~d~~e~l~~l~~eR~~~Y~~-AD-~vV~~d~~  325 (388)
                      +|+      .++...|+.++. +   .+|||+++.+.  .      . ....+.+...+..-++.... .+ ++|+++..
T Consensus        81 v~s------~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~~  154 (176)
T PRK09825         81 VCS------SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIARIDVNHD  154 (176)
T ss_pred             EEE------ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeEEEECCCC
Confidence            565      356667777764 2   58999998865  0      0 11122222222222222222 34 34555542


Q ss_pred             CcccHHHHHHHHHHHHHHhhh
Q 016486          326 DADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       326 s~e~~eeVa~eIl~~L~~~~~  346 (388)
                          +++++.++...++.+..
T Consensus       155 ----~~~~~~~~~~~~~~~~~  171 (176)
T PRK09825        155 ----IENVTEQCRQAVQAFRQ  171 (176)
T ss_pred             ----HHHHHHHHHHHHHHHHh
Confidence                45888888888876654

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.01  E-value=4.4e-09  Score=98.86  Aligned_cols=148  Identities=11%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--chhhhhhccCcHHH---------------------H
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TIDSWMLAEGSDSV---------------------V  242 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--sI~eif~~~Ge~~F---------------------R  242 (388)
                      +..|.|+|..||||||+++.|++.+|++++|+|.+..+.+..  .+.++++..|++.+                     +
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~   85 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKK   85 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHH
Confidence            457999999999999999999999999999999998888754  24556666666554                     1


Q ss_pred             HHHH--------HHHHHHhcCC-CeEEEecCCcccccccHHHHHhh-cCCcEEEEEcCccc--------cccCHHHHHHH
Q 016486          243 NGEC--------DVLESLSSHV-RAVVATLGGQQGAAARADKWQHL-YAGFTVWLSQTEAM--------DENSAKEEARR  304 (388)
Q Consensus       243 e~E~--------~vL~~L~~~~-~~VVStGGG~~gav~r~enr~~L-~~g~VVyLd~~~e~--------D~~d~~e~l~~  304 (388)
                      ++|.        ++.+.+.... ..||.-..     .+-+..+..- .-+.+|++++|.+.        |+-+ .+.+.+
T Consensus        86 ~Le~i~HP~V~~~~~~~~~~~~~~~vv~eip-----LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s-~~~a~~  159 (204)
T PRK14733         86 WLEDYLHPVINKEIKKQVKESDTVMTIVDIP-----LLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKN-RQQAVA  159 (204)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCCeEEEEec-----hhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCC-HHHHHH
Confidence            2221        1112222222 34443331     2222222111 12679999999876        2222 344444


Q ss_pred             HHHHhHh--ccc-cCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          305 HVKDGKL--GYS-NADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       305 l~~eR~~--~Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                      ++....+  ... .||++|++++.+.+   +.-.++...++
T Consensus       160 ri~~Q~~~eek~~~aD~VI~N~g~~~~---~l~~~~~~~~~  197 (204)
T PRK14733        160 FINLQISDKEREKIADFVIDNTELTDQ---ELESKLITTIN  197 (204)
T ss_pred             HHHhCCCHHHHHHhCCEEEECcCCCHH---HHHHHHHHHHH
Confidence            4433322  223 39999999985443   44444444443

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.01  E-value=1.5e-09  Score=92.84  Aligned_cols=92  Identities=18%  Similarity=0.122  Sum_probs=58.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE-EecCCcc
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV-ATLGGQQ  267 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV-StGGG~~  267 (388)
                      |+|+|++||||||+|+.||+.+|++++|.|.+..+..+.-. +...  ....+++...+.+.++...+.+|| +..++  
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~-~~~~--~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~--   76 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLA-SEVA--AIPEVRKALDERQRELAKKPGIVLEGRDIG--   76 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHH-HHhc--ccHhHHHHHHHHHHHHhhCCCEEEEeeeee--
Confidence            89999999999999999999999999999955333221101 1111  112344444455555655555666 33322  


Q ss_pred             cccccHHHHHhhc-CCcEEEEEcCccc
Q 016486          268 GAAARADKWQHLY-AGFTVWLSQTEAM  293 (388)
Q Consensus       268 gav~r~enr~~L~-~g~VVyLd~~~e~  293 (388)
                       ..       .+. ..++|||++|++.
T Consensus        77 -~~-------~~~~~~~~i~l~~~~~~   95 (147)
T cd02020          77 -TV-------VFPDADLKIFLTASPEV   95 (147)
T ss_pred             -eE-------EcCCCCEEEEEECCHHH
Confidence             11       122 3689999999986

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.00  E-value=4.9e-09  Score=94.30  Aligned_cols=96  Identities=13%  Similarity=0.001  Sum_probs=58.9

Q ss_pred             EecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhccC-cHHHHHHHHHHHHHHhcCCCeEEEecCCccc
Q 016486          192 VGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAEG-SDSVVNGECDVLESLSSHVRAVVATLGGQQG  268 (388)
Q Consensus       192 IG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~G-e~~FRe~E~~vL~~L~~~~~~VVStGGG~~g  268 (388)
                      +|++||||||+++.|+..+|..++|+|.+....  .++.....+.+.+ ..+...++..+...+......||.|+.    
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~----   76 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSA----   76 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEec----
Confidence            699999999999999999999999999863211  1111111222222 234444444444333333445555552    


Q ss_pred             ccccHHHHHhhcC-C---cEEEEEcCccc
Q 016486          269 AAARADKWQHLYA-G---FTVWLSQTEAM  293 (388)
Q Consensus       269 av~r~enr~~L~~-g---~VVyLd~~~e~  293 (388)
                        .+...++.+++ +   .+|||+++.++
T Consensus        77 --~~~~~r~~~~~~~~~~~~v~l~a~~~~  103 (163)
T PRK11545         77 --LKKHYRDLLREGNPNLSFIYLKGDFDV  103 (163)
T ss_pred             --chHHHHHHHHccCCCEEEEEEECCHHH
Confidence              45666776664 2   48999988864

>TIGR01351 adk adenylate kinases

Probab=98.99  E-value=9e-09  Score=95.43  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +|+|+|++||||||+|+.||+.+|+++|++++++.+..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~   38 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEI   38 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhh
Confidence            48999999999999999999999999999999987654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.97  E-value=1.1e-09  Score=117.72  Aligned_cols=150  Identities=11%  Similarity=0.100  Sum_probs=92.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCC-
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVR-  257 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~-  257 (388)
                      ++..|+++|++||||||+|+.|+++|     ++.++|.|.+.....+.   ..+. +..+..++.+ .++...+...+. 
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~---~~~~~~~r~~~~~~l-~~~a~~~~~~G~~  534 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD---LGFSDADRVENIRRV-AEVARLMADAGLI  534 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC---CCCCHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence            47889999999999999999999997     46889999987544321   1121 1122334433 222233333343 


Q ss_pred             eEEEecCCcccccccHHHHHhhcC-C-cEEEEEcCccc----cc-----cCHHHHHHHHHHHhHhccc-c-CcEEEEcCC
Q 016486          258 AVVATLGGQQGAAARADKWQHLYA-G-FTVWLSQTEAM----DE-----NSAKEEARRHVKDGKLGYS-N-ADVVVKLQG  324 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~~-g-~VVyLd~~~e~----D~-----~d~~e~l~~l~~eR~~~Y~-~-AD~vV~~d~  324 (388)
                      +|+++....  ...|..+++++.+ + .+|||+++.+.    +.     ....+.+..++..|.++|. . ||++|++++
T Consensus       535 Vivda~~~~--~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id~~~  612 (632)
T PRK05506        535 VLVSFISPF--REERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDTTG  612 (632)
T ss_pred             EEEECCCCC--HHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEeCCC
Confidence            344443221  1223333333333 3 69999999877    21     0112345556677777653 3 899999988


Q ss_pred             CCcccHHHHHHHHHHHHHH
Q 016486          325 WDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       325 ~s~e~~eeVa~eIl~~L~~  343 (388)
                      .++   ++++++|+++|..
T Consensus       613 ~s~---~e~v~~Ii~~l~~  628 (632)
T PRK05506        613 RSP---EELAEQVLELLRR  628 (632)
T ss_pred             CCH---HHHHHHHHHHHHH
Confidence            765   4999999999864

>PRK08356 hypothetical protein; Provisional

Probab=98.97  E-value=1.2e-08  Score=93.77  Aligned_cols=143  Identities=13%  Similarity=0.157  Sum_probs=84.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-----------------chhhhhh-------ccCcHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-----------------TIDSWML-------AEGSDSVV  242 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-----------------sI~eif~-------~~Ge~~FR  242 (388)
                      +.|+|+|++||||||+++.|++ +|++.|.+.+.+.+....                 +..++++       .+|.+..-
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~   84 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI   84 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence            5799999999999999999965 899999987643211100                 0111110       01111111


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccc--------ccc-----CHHHHHHHHHH
Q 016486          243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM--------DEN-----SAKEEARRHVK  307 (388)
Q Consensus       243 e~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~--------D~~-----d~~e~l~~l~~  307 (388)
                         ..+++.+.... .||-.|      +...++++.|..  +.+|||+++.+.        +..     ...+.+.+++.
T Consensus        85 ---~~~~~~~~~~~-~ividG------~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~  154 (195)
T PRK08356         85 ---RLAVDKKRNCK-NIAIDG------VRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE  154 (195)
T ss_pred             ---HHHHHHhccCC-eEEEcC------cCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence               12334442223 344444      355666666653  689999999876        111     13556666766


Q ss_pred             HhHhccc-----c-CcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          308 DGKLGYS-----N-ADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       308 eR~~~Y~-----~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      .+..+|.     . ||++|.+++ +   .++++.+|...+..+
T Consensus       155 ~~~~l~~~~~~~~~aD~vI~N~~-~---~e~~~~~i~~~~~~~  193 (195)
T PRK08356        155 WEEKLYHTTKLKDKADFVIVNEG-T---LEELRKKVEEILREL  193 (195)
T ss_pred             HHHHhhhhhhHHHhCcEEEECCC-C---HHHHHHHHHHHHHHh
Confidence            5555443     4 999996643 3   458887777777654

>PRK14527 adenylate kinase; Provisional

Probab=98.96  E-value=1.7e-08  Score=92.09  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=37.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +++.|+|+|++||||||+++.||+++|+..+++|+++.+..
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~   45 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHV   45 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            56889999999999999999999999999999999987654

>PLN02200 adenylate kinase family protein

Probab=98.96  E-value=1.2e-08  Score=97.29  Aligned_cols=153  Identities=10%  Similarity=0.094  Sum_probs=85.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCcHHHHHHHHHHH-HHHhcC-CC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGSDSVVNGECDVL-ESLSSH-VR  257 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge~~FRe~E~~vL-~~L~~~-~~  257 (388)
                      +..|+|+|+|||||||+|+.||+.+|+.+|++++++.+....      .+.+.+. .|...-.++...++ +.+... .+
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~~  121 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDNN  121 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCCC
Confidence            467999999999999999999999999999999988765421      1222221 23211112222222 223221 23


Q ss_pred             eEEEecCCcccccccHHHHHhhc------CCcEEEEEcCccc--------c---ccCHHHHHHHHHHH----h---Hhcc
Q 016486          258 AVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAM--------D---ENSAKEEARRHVKD----G---KLGY  313 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~------~g~VVyLd~~~e~--------D---~~d~~e~l~~l~~e----R---~~~Y  313 (388)
                      .+|-.| .    ....+.+..+.      ...+|||+++.++        .   .++..+.++++++.    .   ..+|
T Consensus       122 ~~ILDG-~----Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y  196 (234)
T PLN02200        122 KFLIDG-F----PRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYY  196 (234)
T ss_pred             eEEecC-C----cccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 2    33344333331      3679999999987        0   11212333333322    1   1245


Q ss_pred             ccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          314 SNADVVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       314 ~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      ...+.++.+++..+  +++|.+.+...+.....
T Consensus       197 ~~~~~~~~IDa~~~--~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        197 SKKGKLYTINAVGT--VDEIFEQVRPIFAACEA  227 (234)
T ss_pred             HhcCCEEEEECCCC--HHHHHHHHHHHHHHcCC
Confidence            54333444454432  56999999888876654

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.95  E-value=1.1e-08  Score=94.22  Aligned_cols=145  Identities=19%  Similarity=0.152  Sum_probs=83.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc--C-chhhhhhccCcHHH----------------------
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK--Q-TIDSWMLAEGSDSV----------------------  241 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g--~-sI~eif~~~Ge~~F----------------------  241 (388)
                      ..|.|+|.+||||||+++.|++ +|++++|+|.+..+.+.  . .+.++++..|++.|                      
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            4699999999999999999999 99999999999887753  1 23344444443332                      


Q ss_pred             HHHHH--------HHHHHHhcC--CCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHH
Q 016486          242 VNGEC--------DVLESLSSH--VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEAR  303 (388)
Q Consensus       242 Re~E~--------~vL~~L~~~--~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~  303 (388)
                      .++|.        ++.+.+...  ...||.-+.     .+....+..+ -+.+|++++|.++        ++.+ .+.+.
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-----ll~e~~~~~~-~D~vi~V~a~~e~~~~Rl~~R~~~s-~e~~~  154 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIP-----LLFENGLEKL-VDRVLVVDAPPETQLERLMARDGLS-EEEAE  154 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-----HhhcCCchhh-CCeEEEEECCHHHHHHHHHHcCCCC-HHHHH
Confidence            11221        111122211  245554442     2222222211 1689999999877        1222 23344


Q ss_pred             HHHHHhHhc--cc-cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          304 RHVKDGKLG--YS-NADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       304 ~l~~eR~~~--Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +++....+.  +. .||++|++++.    .+++..++...++.
T Consensus       155 ~ri~~Q~~~~~~~~~ad~vI~N~g~----~e~l~~qv~~i~~~  193 (194)
T PRK00081        155 AIIASQMPREEKLARADDVIDNNGD----LEELRKQVERLLQE  193 (194)
T ss_pred             HHHHHhCCHHHHHHhCCEEEECCCC----HHHHHHHHHHHHHh
Confidence            443322222  22 38999988763    34777777666543

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.93  E-value=2.3e-09  Score=97.14  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=61.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHhcCchhhhhhcc-CcHHHHHHHHHHHHHHhcCCCe
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAE-GSDSVVNGECDVLESLSSHVRA  258 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~g~sI~eif~~~-Ge~~FRe~E~~vL~~L~~~~~~  258 (388)
                      +|..|+|+|.+||||||||+.|.++|     ...++|+|.+..... ..+  -|..+ .++..|++ .++.+.|...+..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~-~dl--~fs~~dR~e~~rr~-~~~A~ll~~~G~i   76 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN-ADL--GFSKEDREENIRRI-AEVAKLLADQGII   76 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT-TT----SSHHHHHHHHHHH-HHHHHHHHHTTSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC-CCC--CCCHHHHHHHHHHH-HHHHHHHHhCCCe
Confidence            46789999999999999999999999     367889998764322 222  13322 22333332 4555566666665


Q ss_pred             EEEec-CCcccccccHHHHHhhcC--CcEEEEEcCccc
Q 016486          259 VVATL-GGQQGAAARADKWQHLYA--GFTVWLSQTEAM  293 (388)
Q Consensus       259 VVStG-GG~~gav~r~enr~~L~~--g~VVyLd~~~e~  293 (388)
                      ||++- +-.  ...|..+|+.+..  -+.|||++|.++
T Consensus        77 vIva~isp~--~~~R~~~R~~~~~~~f~eVyv~~~~e~  112 (156)
T PF01583_consen   77 VIVAFISPY--REDREWARELIPNERFIEVYVDCPLEV  112 (156)
T ss_dssp             EEEE----S--HHHHHHHHHHHHTTEEEEEEEES-HHH
T ss_pred             EEEeeccCc--hHHHHHHHHhCCcCceEEEEeCCCHHH
Confidence            55443 211  1223334444443  469999999876

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.93  E-value=1.5e-09  Score=90.73  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=32.2

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      .|+|+|++||||||+|+.||+.+|++++++|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            4899999999999999999999999999999954

...

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.92  E-value=1.1e-08  Score=98.99  Aligned_cols=104  Identities=14%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHHHHHhcCch-hh-hhhccCcHHHHHHHHHHHHHHhcC-CCeEEEe
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTI-DS-WMLAEGSDSVVNGECDVLESLSSH-VRAVVAT  262 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~~~g~sI-~e-if~~~Ge~~FRe~E~~vL~~L~~~-~~~VVSt  262 (388)
                      +.|+|+|+|||||||+|+.|++++ ++.++|.|.+.+...+... .. .+...++..+++.....+...... ..+||.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~   82 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD   82 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence            568999999999999999999999 9999999998777654321 11 122234444555555555554433 3456654


Q ss_pred             cCCcccccccHHHHHh-hcC-C--c-EEEEEcCccc
Q 016486          263 LGGQQGAAARADKWQH-LYA-G--F-TVWLSQTEAM  293 (388)
Q Consensus       263 GGG~~gav~r~enr~~-L~~-g--~-VVyLd~~~e~  293 (388)
                      ...   .......+.. ++. +  + +|||+++.++
T Consensus        83 ~~~---~~~~~~~~~~la~~~~~~~~~v~l~~~~e~  115 (300)
T PHA02530         83 TNL---NPERRRKWKELAKELGAEFEEKVFDVPVEE  115 (300)
T ss_pred             CCC---CHHHHHHHHHHHHHcCCeEEEEEeCCCHHH
Confidence            433   1222223332 232 2  2 7999988776

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.92  E-value=7.5e-09  Score=95.96  Aligned_cols=148  Identities=16%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHHhcCchhhhhhccC-cHHHHHHHHHHHHHHhcCCC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEG-SDSVVNGECDVLESLSSHVR  257 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~~g~sI~eif~~~G-e~~FRe~E~~vL~~L~~~~~  257 (388)
                      .++..|+|+|.+||||||||.+|+++|   |  ..++|+|.+..-.. ..+  -|..++ .+..|++ .++.+.+...+-
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-~dL--gFs~edR~eniRRv-aevAkll~daG~   96 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-RDL--GFSREDRIENIRRV-AEVAKLLADAGL   96 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-CCC--CCChHHHHHHHHHH-HHHHHHHHHCCe
Confidence            356789999999999999999999998   3  57889999765433 112  243322 2333332 445555555444


Q ss_pred             eEE-EecCCcccccccHHHHHhhcC--CcEEEEEcCccc-cccCHHHHHHHHHHH-hH----------hcccc---CcEE
Q 016486          258 AVV-ATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM-DENSAKEEARRHVKD-GK----------LGYSN---ADVV  319 (388)
Q Consensus       258 ~VV-StGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~-D~~d~~e~l~~l~~e-R~----------~~Y~~---AD~v  319 (388)
                      +|| |.-.-+  ...|...|+.+..  .+-||+++|.++ ...|++    -+|.+ |.          .-|+.   .|++
T Consensus        97 iviva~ISP~--r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpK----GLYkKAr~GeI~~fTGid~pYE~P~~Pel~  170 (197)
T COG0529          97 IVIVAFISPY--REDRQMARELLGEGEFIEVYVDTPLEVCERRDPK----GLYKKARAGEIKNFTGIDSPYEAPENPELH  170 (197)
T ss_pred             EEEEEeeCcc--HHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCch----HHHHHHHcCCCCCCcCCCCCCCCCCCCeeE
Confidence            444 333211  1223344455554  469999999976 122221    12322 21          23543   5789


Q ss_pred             EEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          320 VKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       320 V~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      ++++..+++   +.+++|+..|...
T Consensus       171 l~t~~~~ve---e~v~~i~~~l~~~  192 (197)
T COG0529         171 LDTDRNSVE---ECVEQILDLLKER  192 (197)
T ss_pred             eccccCCHH---HHHHHHHHHHHhc
Confidence            998887754   8999998888643

>PRK08118 topology modulation protein; Reviewed

Probab=98.92  E-value=3e-09  Score=96.25  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      +.|+|+|++||||||+|+.|++.+|+++++.|.++++.-      +... ..+.+    .++++.+...++.|| .|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~------w~~~-~~~~~----~~~~~~~~~~~~wVi-dG~~~   69 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN------WEGV-PKEEQ----ITVQNELVKEDEWII-DGNYG   69 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC------CcCC-CHHHH----HHHHHHHhcCCCEEE-eCCcc
Confidence            479999999999999999999999999999999986421      1111 11112    234445555455555 44331


Q ss_pred             ccccccHHHHHhhc-CCcEEEEEcCcc
Q 016486          267 QGAAARADKWQHLY-AGFTVWLSQTEA  292 (388)
Q Consensus       267 ~gav~r~enr~~L~-~g~VVyLd~~~e  292 (388)
                         -.. +  ..+. .+.+|||++|.+
T Consensus        70 ---~~~-~--~~l~~~d~vi~Ld~p~~   90 (167)
T PRK08118         70 ---GTM-D--IRLNAADTIIFLDIPRT   90 (167)
T ss_pred             ---hHH-H--HHHHhCCEEEEEeCCHH
Confidence               111 1  1223 489999999985

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.92  E-value=1.9e-08  Score=95.29  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=35.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~  223 (388)
                      +...|.|.|++||||||+|+.||+.||++++|+|.++..
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            457899999999999999999999999999999998544

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.90  E-value=3.7e-09  Score=90.43  Aligned_cols=111  Identities=19%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhc-CCCeEEEecCC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSS-HVRAVVATLGG  265 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~-~~~~VVStGGG  265 (388)
                      .|+|+|++||||||+++.|++.+++.+|+.|.+..+..+....... ...-...+.+.-...++.... ...+||..+. 
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~-   79 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN-   79 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc-
Confidence            3899999999999999999999999999999999887764222111 111112222233334444333 3345664332 


Q ss_pred             cccccccHHHHH----hhcC-C---cEEEEEcCccccccCHHHHHHHHHHHhHhc
Q 016486          266 QQGAAARADKWQ----HLYA-G---FTVWLSQTEAMDENSAKEEARRHVKDGKLG  312 (388)
Q Consensus       266 ~~gav~r~enr~----~L~~-g---~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~  312 (388)
                           .....|+    .+++ |   .+|||+++.        +.+.++...|...
T Consensus        80 -----~~~~~r~~~~~~~~~~~~~~~~v~l~~~~--------~~~~~R~~~R~~~  121 (143)
T PF13671_consen   80 -----LSREERARLRELARKHGYPVRVVYLDAPE--------ETLRERLAQRNRE  121 (143)
T ss_dssp             ------SHHHHHHHHHHHHHCTEEEEEEEECHHH--------HHHHHHHHTTHCC
T ss_pred             -----CCHHHHHHHHHHHHHcCCeEEEEEEECCH--------HHHHHHHHhcCCc
Confidence                 2233443    3332 4   478887766        3455666666544

...

>TIGR00152 dephospho-CoA kinase

Probab=98.90  E-value=1.8e-08  Score=91.82  Aligned_cols=137  Identities=13%  Similarity=0.084  Sum_probs=80.6

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc---hhhhhhccCcHH----------------HHH------
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT---IDSWMLAEGSDS----------------VVN------  243 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s---I~eif~~~Ge~~----------------FRe------  243 (388)
                      |.|+|.+||||||+++.|++..|++++|+|.+..+.+...   ..++.+..|++.                |..      
T Consensus         2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~~   81 (188)
T TIGR00152         2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELKW   81 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHHH
Confidence            8899999999999999999998899999999987765321   222333333222                111      


Q ss_pred             HH--------HHHHHHHh---cCCCeEEEecCCcccccccHHHHHhhc--CCcEEEEEcCccc-------cccCHHHHHH
Q 016486          244 GE--------CDVLESLS---SHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAM-------DENSAKEEAR  303 (388)
Q Consensus       244 ~E--------~~vL~~L~---~~~~~VVStGGG~~gav~r~enr~~L~--~g~VVyLd~~~e~-------D~~d~~e~l~  303 (388)
                      +|        .++.+.+.   ..+..||...      .+-.++  .+.  -+.+||++++.++       ......+.+.
T Consensus        82 le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~------pll~e~--~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~  153 (188)
T TIGR00152        82 LNNLLHPLIREWMKKLLAQFQSKLAYVLLDV------PLLFEN--KLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQ  153 (188)
T ss_pred             HHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc------hHhhhC--CcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence            11        12222222   1123455333      111111  122  2679999999887       1122245666


Q ss_pred             HHHHHhHhcccc---CcEEEEcCCCCcccHHHHHHHH
Q 016486          304 RHVKDGKLGYSN---ADVVVKLQGWDADHAKSVAQAS  337 (388)
Q Consensus       304 ~l~~eR~~~Y~~---AD~vV~~d~~s~e~~eeVa~eI  337 (388)
                      +++....+.+..   ||++|++++.    .++...++
T Consensus       154 ~r~~~q~~~~~~~~~ad~vI~N~~~----~e~l~~~~  186 (188)
T TIGR00152       154 KRLASQMDIEERLARADDVIDNSAT----LADLVKQL  186 (188)
T ss_pred             HHHHhcCCHHHHHHhCCEEEECCCC----HHHHHHHH
Confidence            777666555543   9999988763    33555544

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK14528 adenylate kinase; Provisional

Probab=98.89  E-value=3.8e-08  Score=90.20  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=36.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      ++|+|+|+|||||||+++.||+.+|++++++|+++.+..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~   40 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV   40 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence            569999999999999999999999999999999987754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.89  E-value=1.3e-08  Score=91.52  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +|+|+|++||||||+++.||+.+|+.++++|+++.+..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~   38 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI   38 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH
Confidence            48999999999999999999999999999999987764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.89  E-value=3.1e-09  Score=108.64  Aligned_cols=148  Identities=19%  Similarity=0.164  Sum_probs=86.7

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhhhhccCcH----------------HHHHHHH-H
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSD----------------SVVNGEC-D  247 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~eif~~~Ge~----------------~FRe~E~-~  247 (388)
                      .|.|+|++||||||+++.|++ +|+++||+|.+..+.+..   .+.++++..|++                .|+..|. .
T Consensus         3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~   81 (395)
T PRK03333          3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA   81 (395)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            599999999999999999998 899999999999887643   345666666666                3433221 1


Q ss_pred             HHHHH-------------hc-CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHH
Q 016486          248 VLESL-------------SS-HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRH  305 (388)
Q Consensus       248 vL~~L-------------~~-~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l  305 (388)
                      .|+.+             .. ....||..+.-    .+....+..+ -+.+|||++|.+.        ++.+ .+.....
T Consensus        82 ~le~i~hP~I~~~i~~~i~~~~~~~vvv~eip----LL~E~~~~~~-~D~iI~V~ap~e~ri~Rl~~rRg~s-~~~a~~r  155 (395)
T PRK03333         82 VLNGIVHPLVGARRAELIAAAPEDAVVVEDIP----LLVESGMAPL-FHLVVVVDADVEVRVRRLVEQRGMA-EADARAR  155 (395)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCCEEEEEee----eeecCCchhh-CCEEEEEECCHHHHHHHHHhcCCCC-HHHHHHH
Confidence            11111             11 11223322211    1222111110 1689999999987        1112 2233333


Q ss_pred             HHHhHh--ccc-cCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          306 VKDGKL--GYS-NADVVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       306 ~~eR~~--~Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      +....+  ... .||++|++++ +   .+++..++...++.++.
T Consensus       156 i~~Q~~~e~k~~~AD~vIdN~~-s---~e~l~~~v~~~l~~~~~  195 (395)
T PRK03333        156 IAAQASDEQRRAVADVWLDNSG-T---PDELVEAVRALWADRLL  195 (395)
T ss_pred             HHhcCChHHHHHhCCEEEECCC-C---HHHHHHHHHHHHHHHHh
Confidence            332111  123 3899998665 3   34788888877776654

>PRK14526 adenylate kinase; Provisional

Probab=98.89  E-value=3.3e-08  Score=93.09  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------Cchhhhhh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWML  234 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~  234 (388)
                      ++|+|+|++||||||+++.||+.+|+.++++++++.+...      ..+.+++.
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~   54 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE   54 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH
Confidence            3699999999999999999999999999999999876532      34555554

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.89  E-value=1.2e-08  Score=97.26  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--c----hhhhhhccCc----HHHHHHHHHHHHHHh-
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--T----IDSWMLAEGS----DSVVNGECDVLESLS-  253 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--s----I~eif~~~Ge----~~FRe~E~~vL~~L~-  253 (388)
                      .+++|+|+|+|||||||+|+.||+.+|+++|++|+++++..+.  +    +.+++.. |.    +.+..+-.+.+.++. 
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhcc
Confidence            4577999999999999999999999999999999999876543  2    3333332 42    333333333444432 


Q ss_pred             cCCCeEEEecCCcccccccHHHHHhhc----CCcEEEEEcCcc
Q 016486          254 SHVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEA  292 (388)
Q Consensus       254 ~~~~~VVStGGG~~gav~r~enr~~L~----~g~VVyLd~~~e  292 (388)
                      .....+|-.| .    .-.......|.    ...+|+|+++.+
T Consensus        84 ~~~~g~iLDG-f----PRt~~Qa~~l~~~~~~~~vi~l~~~~~  121 (229)
T PTZ00088         84 DCFKGFILDG-F----PRNLKQCKELGKITNIDLFVNIYLPRN  121 (229)
T ss_pred             ccCceEEEec-C----CCCHHHHHHHHhcCCCCEEEEEeCCHH
Confidence            2223445445 1    33333333332    267999999874

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.87  E-value=2e-08  Score=99.03  Aligned_cols=132  Identities=11%  Similarity=0.077  Sum_probs=79.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhc---CCCeEEEe
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS---HVRAVVAT  262 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~---~~~~VVSt  262 (388)
                      ...|+|+|++||||||+++.|+ .+|+.++|.-..         ..         +.    .+++.+..   ...+.|+.
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~---------~L---------~~----~l~~~~~~~~~~~~~av~i   62 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPP---------SL---------LP----KLVELLAQSGGIRKVAVVI   62 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCH---------HH---------HH----HHHHHHHhcCCCCCeEEEE
Confidence            3579999999999999999997 569888865321         10         11    11111111   12333332


Q ss_pred             cCCcccc-cccHHHHHhhcC-C---cEEEEEcCccc------cc----c--CHHHHHHHHHHHh---HhccccCcEEEEc
Q 016486          263 LGGQQGA-AARADKWQHLYA-G---FTVWLSQTEAM------DE----N--SAKEEARRHVKDG---KLGYSNADVVVKL  322 (388)
Q Consensus       263 GGG~~ga-v~r~enr~~L~~-g---~VVyLd~~~e~------D~----~--d~~e~l~~l~~eR---~~~Y~~AD~vV~~  322 (388)
                      ..=.++. -...++++.|+. |   .+|||+++.++      ..    +  ...+..+.++++|   .++|+.||++|++
T Consensus        63 D~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDT  142 (288)
T PRK05416         63 DVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDT  142 (288)
T ss_pred             ccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEEC
Confidence            2100000 113355666664 4   47999999988      10    0  0012334455555   5667779999999


Q ss_pred             CCCCcccHHHHHHHHHHHHHH
Q 016486          323 QGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      ++.+++   +++++|...+..
T Consensus       143 s~ls~~---el~e~I~~~l~~  160 (288)
T PRK05416        143 SELSVH---QLRERIRERFGG  160 (288)
T ss_pred             CCCCHH---HHHHHHHHHHhc
Confidence            998764   999999998865

>PRK04040 adenylate kinase; Provisional

Probab=98.83  E-value=9.2e-08  Score=88.38  Aligned_cols=40  Identities=13%  Similarity=0.085  Sum_probs=35.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc--CCcceechhHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA  225 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID~D~lIE~~~  225 (388)
                      ++.|+|+|++||||||+++.|++.|  ++.+++.++++.+.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a   43 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA   43 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence            3679999999999999999999999  899999999875544

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.81  E-value=9.9e-08  Score=88.48  Aligned_cols=40  Identities=20%  Similarity=0.064  Sum_probs=36.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g  226 (388)
                      +.|.|+|++||||||+++.|++.+|++++|+|++..+...
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~   41 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA   41 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence            4699999999999999999999999999999999877653

>PLN02422 dephospho-CoA kinase

Probab=98.80  E-value=1.1e-07  Score=91.19  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=86.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhhhhccCcHHH----------------------H
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSDSV----------------------V  242 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~eif~~~Ge~~F----------------------R  242 (388)
                      .|.|+|..||||||+++.|+ .+|++++|+|++..+.+..   ...++.+..|++.+                      +
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~   81 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ   81 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            59999999999999999999 5899999999997766532   13444444444433                      2


Q ss_pred             HHHH--------HHHHHHh----cCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHH
Q 016486          243 NGEC--------DVLESLS----SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEA  302 (388)
Q Consensus       243 e~E~--------~vL~~L~----~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l  302 (388)
                      ++|.        ++.+.+.    ....+||.-..     .+-+..+..+ -+.+|++++|.++        ++-+ .+.+
T Consensus        82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eip-----LL~E~~~~~~-~D~vI~V~a~~e~ri~RL~~R~g~s-~eea  154 (232)
T PLN02422         82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIP-----LLFETKMDKW-TKPVVVVWVDPETQLERLMARDGLS-EEQA  154 (232)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeh-----hhhhcchhhh-CCEEEEEECCHHHHHHHHHHcCCCC-HHHH
Confidence            2221        1111111    11234544332     2222222221 2689999999987        2222 4555


Q ss_pred             HHHHHHhHhc--ccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          303 RRHVKDGKLG--YSN-ADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       303 ~~l~~eR~~~--Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      .+++....+.  ... ||++|++++.    .++...++...++.+.
T Consensus       155 ~~Ri~~Q~~~eek~~~AD~VI~N~gs----~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        155 RNRINAQMPLDWKRSKADIVIDNSGS----LEDLKQQFQKVLEKIR  196 (232)
T ss_pred             HHHHHHcCChhHHHhhCCEEEECCCC----HHHHHHHHHHHHHHHh
Confidence            5555444333  233 9999998873    3467667666665553

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.78  E-value=1.3e-07  Score=88.00  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=33.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      .|.|+|.+||||||+++.|+. +|++++|+|++..+..
T Consensus         3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~   39 (200)
T PRK14734          3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV   39 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence            589999999999999999998 7999999998765544

>PLN02165 adenylate isopentenyltransferase

Probab=98.78  E-value=1.7e-08  Score=101.38  Aligned_cols=83  Identities=8%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcCc---hhhhhhccCc---HHHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT---IDSWMLAEGS---DSVV  242 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~s---I~eif~~~Ge---~~FR  242 (388)
                      ..++..|+|+|++||||||++..||+.+++.+|+.|.+              .++..|..   +..+....++   ..|+
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~  119 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR  119 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence            34577899999999999999999999999999999998              56666665   4444444444   6888


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCC
Q 016486          243 NGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       243 e~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      +.+.+++.++.+.+..+|.|||+
T Consensus       120 ~~a~~~I~~i~~~~~~PI~vGGT  142 (334)
T PLN02165        120 SLASLSISEITSRQKLPIVAGGS  142 (334)
T ss_pred             HHHHHHHHHHHHCCCcEEEECCh
Confidence            88888888888778888888887

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.78  E-value=5.3e-08  Score=88.42  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g  226 (388)
                      |.|+|.+||||||+++.|++ +|++++|+|++.++.+.
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~   38 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE   38 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence            78999999999999999999 99999999999887654

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PLN02459 probable adenylate kinase

Probab=98.77  E-value=1.2e-07  Score=92.50  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=36.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +++|+|+|+|||||||+++.||+.+|+.+|++++++.+..
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei   68 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEI   68 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHH
Confidence            3789999999999999999999999999999999987653

>PRK13973 thymidylate kinase; Provisional

Probab=98.75  E-value=2.1e-07  Score=86.89  Aligned_cols=157  Identities=17%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---CCcceec--------hhHHHHHhcC----c-----hhhhhhccCcHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST--------KELLETFAKQ----T-----IDSWMLAEGSDSVVN  243 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~--------D~lIE~~~g~----s-----I~eif~~~Ge~~FRe  243 (388)
                      |+|+-|+|.|++||||||+++.|++.|   |++++-+        .+++.+....    .     ..-+|..   +.+..
T Consensus         1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a---~r~~~   77 (213)
T PRK13973          1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA---ARDDH   77 (213)
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH---HHHHH
Confidence            357899999999999999999999999   8888866        4444443211    0     0112222   12222


Q ss_pred             HHHHHHHHHhcCCCeEEEecCC-----ccccc--ccHHHHHh--------hcCCcEEEEEcCccc--------ccc---C
Q 016486          244 GECDVLESLSSHVRAVVATLGG-----QQGAA--ARADKWQH--------LYAGFTVWLSQTEAM--------DEN---S  297 (388)
Q Consensus       244 ~E~~vL~~L~~~~~~VVStGGG-----~~gav--~r~enr~~--------L~~g~VVyLd~~~e~--------D~~---d  297 (388)
                      ++..+...+.. +.+||+..=-     .||+.  ...+....        +....+|||++|+++        ...   +
T Consensus        78 ~~~~i~~~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~  156 (213)
T PRK13973         78 VEEVIRPALAR-GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPD  156 (213)
T ss_pred             HHHHHHHHHHC-CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccC
Confidence            23334444433 4466653210     01111  11111111        124789999999987        011   1


Q ss_pred             HHH-HHHHHHHHhHhcccc-Cc----EEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          298 AKE-EARRHVKDGKLGYSN-AD----VVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       298 ~~e-~l~~l~~eR~~~Y~~-AD----~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      ..+ .-.+.++++...|.+ ++    .++.+++..+  +++|.++|...+..++.
T Consensus       157 ~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~--~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        157 RFEKEDLAFHEKRREAFLQIAAQEPERCVVIDATAS--PEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             chhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCC--HHHHHHHHHHHHHHHHh
Confidence            111 112334445555654 43    2333444333  67999999999887654

>TIGR00017 cmk cytidylate kinase

Probab=98.74  E-value=1.1e-07  Score=89.78  Aligned_cols=38  Identities=26%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      +.|.|.|++||||||+++.||++||+.++|+|.+....
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            57999999999999999999999999999999876433

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.73  E-value=1e-07  Score=85.11  Aligned_cols=31  Identities=26%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~  217 (388)
                      +.|+|.|++||||||+++.|++.|   |+.++..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~   34 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT   34 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            358999999999999999999999   7766655

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.72  E-value=2.4e-07  Score=88.10  Aligned_cols=38  Identities=26%  Similarity=0.261  Sum_probs=34.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      ..|.|=||.|||||||++.||++||+.|+|+..+....
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            67999999999999999999999999999998886543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.70  E-value=3.1e-07  Score=84.78  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=33.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE  222 (388)
                      ++..|.|+|.+||||||+++.|++.++   ..+++.|.++.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            567899999999999999999999993   56789998764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.67  E-value=2.9e-07  Score=84.10  Aligned_cols=35  Identities=23%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             EEEEecCCCchHHHHHHHHHhc---CCcceechhHHHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLET  223 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~  223 (388)
                      |.|+|++||||||+++.|+..+   +..++.+|+++..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~   39 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD   39 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence            7899999999999999999998   4778889987643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14529 adenylate kinase; Provisional

Probab=98.64  E-value=5.5e-07  Score=85.89  Aligned_cols=101  Identities=5%  Similarity=0.045  Sum_probs=63.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHH-HhcC-CCe
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLES-LSSH-VRA  258 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~-~~~  258 (388)
                      ++|+|+|++||||||+++.||+.++++++++.+++.+...      +.+.+++ +.|.-.--++-..++.+ |.+. .+.
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g   79 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG   79 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence            4699999999999999999999999999999888876542      2344444 33554444444444433 3222 233


Q ss_pred             EEEecCCcccccccHHHHHh----hc-----CCcEEEEEcCccc
Q 016486          259 VVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAM  293 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~----L~-----~g~VVyLd~~~e~  293 (388)
                      +|-.|  +   +-..+.-+.    |.     ...+|+|++|.++
T Consensus        80 ~iLDG--f---PRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~  118 (223)
T PRK14529         80 WLLDG--F---PRNKVQAEKLWEALQKEGMKLDYVIEILLPREV  118 (223)
T ss_pred             EEEeC--C---CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            34334  1   333322222    21     2579999998753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.64  E-value=1.3e-07  Score=103.12  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      .|.|.|++||||||+++.||++|||.|+|++.+....
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            6999999999999999999999999999998886553

>PRK07261 topology modulation protein; Provisional

Probab=98.62  E-value=1.2e-07  Score=85.85  Aligned_cols=89  Identities=12%  Similarity=0.093  Sum_probs=55.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|++||||||+++.|++.+|+++++.|.+.....      +. +...+.|..    .+..+...+. +|--|.. 
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~------~~-~~~~~~~~~----~~~~~~~~~~-wIidg~~-   67 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN------WQ-ERDDDDMIA----DISNFLLKHD-WIIDGNY-   67 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc------cc-cCCHHHHHH----HHHHHHhCCC-EEEcCcc-
Confidence            469999999999999999999999999999998754211      11 112222322    1223333345 4444533 


Q ss_pred             ccccccHHHHHhhc-CCcEEEEEcCcc
Q 016486          267 QGAAARADKWQHLY-AGFTVWLSQTEA  292 (388)
Q Consensus       267 ~gav~r~enr~~L~-~g~VVyLd~~~e  292 (388)
                          ........+. ...+|||+.|..
T Consensus        68 ----~~~~~~~~l~~ad~vI~Ld~p~~   90 (171)
T PRK07261         68 ----SWCLYEERMQEADQIIFLNFSRF   90 (171)
T ss_pred             ----hhhhHHHHHHHCCEEEEEcCCHH
Confidence                1111112233 488999999974

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.61  E-value=8.9e-07  Score=85.53  Aligned_cols=39  Identities=13%  Similarity=0.022  Sum_probs=35.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g  226 (388)
                      .|.|+|..|||||||++.|++.+|+++||.|.+..+...
T Consensus         3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~   41 (244)
T PTZ00451          3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA   41 (244)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence            589999999999999999999999999999999776653

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.59  E-value=8.3e-07  Score=82.64  Aligned_cols=146  Identities=14%  Similarity=0.081  Sum_probs=81.1

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhhhhccCcHHH----------------------HH
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSDSV----------------------VN  243 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~eif~~~Ge~~F----------------------Re  243 (388)
                      |.|+|.+||||||+++.|++ +|..++|.|.+..+....   -+..+.+..|.+.+                      +.
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~   80 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA   80 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence            78999999999999999976 699999999997665532   12223333333222                      22


Q ss_pred             HHHH--------HHHHHh--cCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHH
Q 016486          244 GECD--------VLESLS--SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRH  305 (388)
Q Consensus       244 ~E~~--------vL~~L~--~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l  305 (388)
                      +|.-        +.+.+.  ....+||.-..     .+.+..+..+ -+.+||+++|.++        ++-+ .+.+..+
T Consensus        81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~p-----LL~E~~~~~~-~D~vi~V~a~~e~r~~RL~~R~g~s-~e~a~~r  153 (196)
T PRK14732         81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVP-----LLFETDAYTL-CDATVTVDSDPEESILRTISRDGMK-KEDVLAR  153 (196)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCcEEEEee-----eeeEcCchhh-CCEEEEEECCHHHHHHHHHHcCCCC-HHHHHHH
Confidence            2211        111111  12234443221     2222222211 2789999999987        2223 3445554


Q ss_pred             HHHhHh--ccc-cCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          306 VKDGKL--GYS-NADVVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       306 ~~eR~~--~Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      +..-.+  -+. .||++|++++.    .+++..++...++.+++
T Consensus       154 i~~Q~~~~~k~~~aD~vI~N~~~----~~~l~~~v~~l~~~~~~  193 (196)
T PRK14732        154 IASQLPITEKLKRADYIVRNDGN----REGLKEECKILYSTLLK  193 (196)
T ss_pred             HHHcCCHHHHHHhCCEEEECCCC----HHHHHHHHHHHHHHHHH
Confidence            443222  123 39999988763    34666666665555443

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.57  E-value=1.7e-06  Score=80.74  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=33.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      ..|.|+|.+||||||+++.|++ +|++.+|.|.+..+..
T Consensus         6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~   43 (208)
T PRK14731          6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQ   43 (208)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHc
Confidence            5688999999999999999997 8999999997755543

>PLN02842 nucleotide kinase

Probab=98.55  E-value=7.3e-07  Score=94.02  Aligned_cols=153  Identities=16%  Similarity=0.175  Sum_probs=89.6

Q ss_pred             EEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHH-HHh----cCCCe
Q 016486          190 FLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLE-SLS----SHVRA  258 (388)
Q Consensus       190 vLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~-~L~----~~~~~  258 (388)
                      .|+|++||||||+++.||+.+|+.++++++++....      |..+.+++.. |+..-.+.-..++. .+.    .....
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~-G~lvPdeiv~~ll~drl~~~~~~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNS-GRLVPDEIVIAMVTGRLSREDAKEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhCccccCCcE
Confidence            389999999999999999999999999999886542      2334555532 32111111112222 221    12345


Q ss_pred             EEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc----------c--------------------------ccC
Q 016486          259 VVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM----------D--------------------------ENS  297 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~----------D--------------------------~~d  297 (388)
                      |+ .|-     .......+.|.     ..++|||+++.++          +                          .+|
T Consensus        80 IL-DGf-----PRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD  153 (505)
T PLN02842         80 LL-DGY-----PRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDD  153 (505)
T ss_pred             EE-eCC-----CCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCC
Confidence            55 552     33333333332     3689999999877          1                          012


Q ss_pred             HHHHHHHHHHH---h-Hhcccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhhhcCCCC
Q 016486          298 AKEEARRHVKD---G-KLGYSN-ADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKL  351 (388)
Q Consensus       298 ~~e~l~~l~~e---R-~~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~l  351 (388)
                      ..+.++++++.   . .+.... .+.++.+++..+  +++|.++|...|...+..++++
T Consensus       154 ~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs--~EeVfeeI~~iL~~~L~~~~~~  210 (505)
T PLN02842        154 TEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRP--KEVVFEEISSLLSQIQKDATKM  210 (505)
T ss_pred             CHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCC--HHHHHHHHHHHHHHHHhhhhhh
Confidence            23444444322   1 121111 134455665443  6799999999999988877765

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.55  E-value=5.5e-07  Score=81.51  Aligned_cols=27  Identities=22%  Similarity=0.079  Sum_probs=25.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +|+.|+|.|++||||||+++.|++.|+
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999999994

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.53  E-value=1e-06  Score=81.16  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      ++|+|+|+|||||||+|+.||++++++.+|+|++.....
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~   39 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI   39 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence            479999999999999999999999999999999876654

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.53  E-value=1.3e-06  Score=79.32  Aligned_cols=26  Identities=19%  Similarity=0.028  Sum_probs=24.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +++.|+|.|++||||||+++.|++.|
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999987

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.48  E-value=4.8e-07  Score=80.17  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=54.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486          189 IFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL  263 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStG  263 (388)
                      |+|+|.+||||||+++.|++.+   |  +.+++.|.+.....+. .. +-.+...+.++.+.. ..+.+...+..||...
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~-~~-~~~~~~~~~~~~~~~-~a~~l~~~G~~VIid~   78 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKD-LG-FSREDREENIRRIAE-VAKLLADAGLIVIAAF   78 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhc-cC-CCcchHHHHHHHHHH-HHHHHHhCCCEEEEcc
Confidence            7899999999999999999999   5  4567888876544321 10 111122233433322 3334444444444333


Q ss_pred             CCcccccccHHHHHhhc----C--CcEEEEEcCcc
Q 016486          264 GGQQGAAARADKWQHLY----A--GFTVWLSQTEA  292 (388)
Q Consensus       264 GG~~gav~r~enr~~L~----~--g~VVyLd~~~e  292 (388)
                      .     ....+.|..++    .  -.+|||++|.+
T Consensus        79 ~-----~~~~~~R~~~~~l~~~~~~~~i~l~~~~e  108 (149)
T cd02027          79 I-----SPYREDREAARKIIGGGDFLEVFVDTPLE  108 (149)
T ss_pred             C-----CCCHHHHHHHHHhcCCCCEEEEEEeCCHH
Confidence            2     12333333322    1  34899999874

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.48  E-value=1.1e-06  Score=81.31  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=80.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhc--cCcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLA--EGSDSVVNGECDVLESLSSHVRAVVATL  263 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~--~Ge~~FRe~E~~vL~~L~~~~~~VVStG  263 (388)
                      +.|.|+|-||+||||+++.|+ .||+.++++-+++.+.- ..-.++....  -+.+..|    ..++.+......||.+-
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~----~~le~~~~~~~~Ivd~H   75 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLR----KRLEELLREGSGIVDSH   75 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHH----HHHHHHhccCCeEeech
Confidence            579999999999999999999 99999999998876542 1111111000  0112222    22222222334555421


Q ss_pred             CCcccccccHHHHHhh-c-CCcEEEEEcCccc------c-ccC-------H-HHHHHHHHHHhHhccccCcEEEEcCCCC
Q 016486          264 GGQQGAAARADKWQHL-Y-AGFTVWLSQTEAM------D-ENS-------A-KEEARRHVKDGKLGYSNADVVVKLQGWD  326 (388)
Q Consensus       264 GG~~gav~r~enr~~L-~-~g~VVyLd~~~e~------D-~~d-------~-~e~l~~l~~eR~~~Y~~AD~vV~~d~~s  326 (388)
                                  +.+| . ..+||-|.++++.      + +-+       . -+.+.-.+.+-...+ .+-+.|++++.+
T Consensus        76 ------------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~-~~v~evdtt~~s  142 (180)
T COG1936          76 ------------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF-EAVIEVDTTNRS  142 (180)
T ss_pred             ------------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CceEEEECCCCC
Confidence                        2333 3 3889999999976      1 101       0 111222222222233 345779999988


Q ss_pred             cccHHHHHHHHHHHHHH
Q 016486          327 ADHAKSVAQASLSALKQ  343 (388)
Q Consensus       327 ~e~~eeVa~eIl~~L~~  343 (388)
                      ++   +++++|.+.+..
T Consensus       143 ~e---e~~~~i~~ii~~  156 (180)
T COG1936         143 PE---EVAEEIIDIIGG  156 (180)
T ss_pred             HH---HHHHHHHHHHcc
Confidence            65   999999998886

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.48  E-value=9.2e-07  Score=83.16  Aligned_cols=38  Identities=24%  Similarity=0.258  Sum_probs=34.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +.|-|+|+.||||||+++.+++ +|++.+|+|+.+.+..
T Consensus         3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~   40 (201)
T COG0237           3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV   40 (201)
T ss_pred             eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence            5689999999999999999999 9999999999987554

>PRK13974 thymidylate kinase; Provisional

Probab=98.46  E-value=2.2e-06  Score=80.09  Aligned_cols=27  Identities=26%  Similarity=0.075  Sum_probs=25.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +|..|+|.|++||||||+++.|++.|.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999884

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.45  E-value=3.6e-06  Score=77.54  Aligned_cols=142  Identities=15%  Similarity=0.088  Sum_probs=74.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcCch--hhhh--h---ccCcHHHHHHHHHHHH---HHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQTI--DSWM--L---AEGSDSVVNGECDVLE---SLS  253 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~sI--~eif--~---~~Ge~~FRe~E~~vL~---~L~  253 (388)
                      |+.|+|-|.|-||||||++.|.+.+.-+|+-  .|.+++.+.....  ..-+  .   .++...|+.+......   .++
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a   80 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA   80 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999877554  6888874321111  0111  1   1123556666654443   334


Q ss_pred             cCCCeEEEec---CCcccccccHHHH-HhhcCC--cEEEEEcCccccccCHHHHHHHHHHHhH------------hccc-
Q 016486          254 SHVRAVVATL---GGQQGAAARADKW-QHLYAG--FTVWLSQTEAMDENSAKEEARRHVKDGK------------LGYS-  314 (388)
Q Consensus       254 ~~~~~VVStG---GG~~gav~r~enr-~~L~~g--~VVyLd~~~e~D~~d~~e~l~~l~~eR~------------~~Y~-  314 (388)
                      ..+.-||...   ++   .. -.+.| +.|..-  +.|-+.+|+++        ++++-..|.            ..|. 
T Consensus        81 ~aG~~VIvD~v~~~~---~~-l~d~l~~~L~~~~vl~VgV~Cplei--------l~~RE~~RgDR~~G~a~~q~~~Vh~~  148 (174)
T PF07931_consen   81 RAGNNVIVDDVFLGP---RW-LQDCLRRLLAGLPVLFVGVRCPLEI--------LERRERARGDRPIGLAAWQAEHVHEG  148 (174)
T ss_dssp             HTT-EEEEEE--TTT---HH-HHHHHHHHHTTS-EEEEEEE--HHH--------HHHHHHHHTSSSTTHHHHHTTGGGTT
T ss_pred             hCCCCEEEecCccCc---HH-HHHHHHHHhCCCceEEEEEECCHHH--------HHHHHHhcCCcchHHHHHHHhhcccC
Confidence            4454444332   11   01 12334 445442  35666666654        333333332            1233 


Q ss_pred             -cCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          315 -NADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       315 -~AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                       ..|+.|+++..+|+   ++|++|++.++
T Consensus       149 ~~YDleVDTs~~sp~---ecA~~I~~~~~  174 (174)
T PF07931_consen  149 GRYDLEVDTSATSPE---ECAREILARLE  174 (174)
T ss_dssp             ---SEEEETTSS-HH---HHHHHHHTT--
T ss_pred             CCCCEEEECCCCCHH---HHHHHHHHHhC
Confidence             37999999988764   99999987664

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.42  E-value=4.1e-06  Score=78.59  Aligned_cols=27  Identities=33%  Similarity=0.333  Sum_probs=24.9

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      |+|.|+.||||||+++.|++.|++.++
T Consensus         2 I~iEG~~GsGKSTl~~~L~~~l~~~~~   28 (219)
T cd02030           2 ITVDGNIASGKGKLAKELAEKLGMKYF   28 (219)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            899999999999999999999987655

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.42  E-value=3.6e-06  Score=78.66  Aligned_cols=41  Identities=15%  Similarity=-0.004  Sum_probs=33.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCccee-chhHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS-TKELLETFA  225 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID-~D~lIE~~~  225 (388)
                      +++.|++.|.+|+||||+++.||+++|+.++- +|.+.+.+.
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r   43 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLR   43 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHH
Confidence            46789999999999999999999999998655 554444433

>TIGR00235 udk uridine kinase

Probab=98.40  E-value=6.6e-06  Score=76.16  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=31.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lI  221 (388)
                      ++..|.|+|++||||||+++.|+..++   ..++..|.++
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            467799999999999999999999886   5678888764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.40  E-value=2.8e-06  Score=77.61  Aligned_cols=27  Identities=22%  Similarity=0.149  Sum_probs=25.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +|..|+|+|++||||||+++.|++.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            578999999999999999999999875

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.39  E-value=1.6e-06  Score=80.04  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=33.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g  226 (388)
                      .|.|+|..||||||+++.|++ +|++.+|+|.+..+.+.
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~   39 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYE   39 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTS
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhh
Confidence            588999999999999999999 99999999999766653

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.37  E-value=3e-06  Score=79.87  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=74.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc-----c-eechhHHH-----HHhcCchh-hhhhccCcHHHHHHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-----P-LSTKELLE-----TFAKQTID-SWMLAEGSDSVVNGECDVLESL  252 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-----f-ID~D~lIE-----~~~g~sI~-eif~~~Ge~~FRe~E~~vL~~L  252 (388)
                      ++..|.|+|++||||||+++.|+..+...     . +..|++..     ...|.-.. ........+.+.+    ++..+
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~----~l~~l  107 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAA----LLRRL  107 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHH----HHHHH
Confidence            45689999999999999999999988531     2 55555431     11111000 0011111122221    22111


Q ss_pred             h--------------------------cCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccc--------c--
Q 016486          253 S--------------------------SHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM--------D--  294 (388)
Q Consensus       253 ~--------------------------~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~--------D--  294 (388)
                      .                          ...++||..|.+   +......|..+..  +.+|||++|.+.        +  
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~---~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~  184 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNY---LLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLA  184 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcc---eeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHh
Confidence            1                          023578889987   4555567777765  689999999876        0  


Q ss_pred             ccCHHHHHHHHHHHhH-hc------ccc-CcEEEEcCCC
Q 016486          295 ENSAKEEARRHVKDGK-LG------YSN-ADVVVKLQGW  325 (388)
Q Consensus       295 ~~d~~e~l~~l~~eR~-~~------Y~~-AD~vV~~d~~  325 (388)
                      ..-..+.+.+++..|. +.      ... ||++|.+++.
T Consensus       185 ~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~~  223 (229)
T PRK09270        185 GGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTAT  223 (229)
T ss_pred             cCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecCC
Confidence            1112344555555432 21      222 7777776653

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.36  E-value=1.4e-06  Score=79.48  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-chhh-hhhc--------------------------cCcH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-TIDS-WMLA--------------------------EGSD  239 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-sI~e-if~~--------------------------~Ge~  239 (388)
                      .|.|.+..|||+++||+.||++||++|+|- +++++.++. .+++ .+..                          .-.+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            378999999999999999999999999999 666655432 1111 1111                          1123


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc
Q 016486          240 SVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM  293 (388)
Q Consensus       240 ~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~  293 (388)
                      .+...+.+++.+++..+++||.-=||.  .+++.     ....+-|||.+|.+.
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~--~il~~-----~~~~l~V~i~A~~~~  126 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGRCAN--YILRD-----IPNVLHVFIYAPLEF  126 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEESTTHH--HHTTT------TTEEEEEEEE-HHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEecCHh--hhhCC-----CCCeEEEEEECCHHH
Confidence            333455677778876667776533221  12211     012479999999876

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.33  E-value=4.2e-06  Score=76.53  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhc-cCcHHHHHHHHHHHHHHhcCCC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLA-EGSDSVVNGECDVLESLSSHVR  257 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~-~Ge~~FRe~E~~vL~~L~~~~~  257 (388)
                      .+|..|+++|.+||||||+|-.|.+.|-     -..+|+|.+.   .|..-+--|.+ +..+..|++ .++.+-.+.  .
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR---hGLN~DL~F~a~dR~ENIRRi-geVaKLFAD--a  102 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR---HGLNKDLGFKAEDRNENIRRI-GEVAKLFAD--A  102 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc---cccccccCcchhhhhhhHHHH-HHHHHHHhc--c
Confidence            3688999999999999999999999983     3467889874   23322222543 333445543 344433333  2


Q ss_pred             eEEEecCCcc-cccccHHHHHhhcC--CcEEEEEcCccc-cccCHHHHHHHHHHHhH--------hcccc---CcEEEEc
Q 016486          258 AVVATLGGQQ-GAAARADKWQHLYA--GFTVWLSQTEAM-DENSAKEEARRHVKDGK--------LGYSN---ADVVVKL  322 (388)
Q Consensus       258 ~VVStGGG~~-gav~r~enr~~L~~--g~VVyLd~~~e~-D~~d~~e~l~~l~~eR~--------~~Y~~---AD~vV~~  322 (388)
                      .||+--.-+. =-..|+..|.++.+  .+-||.++|.+. +..++. -+.++-...+        .-|+.   +.+++..
T Consensus       103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPK-GLYK~ARaGkIKgFTGIddPYEaP~~cEi~l~~  181 (207)
T KOG0635|consen  103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPK-GLYKLARAGKIKGFTGIDDPYEAPLNCEIVLKS  181 (207)
T ss_pred             ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCch-hHHHHHhcccccccccCCCcccCCCCcEEEEcc
Confidence            3443221110 01345667777776  368999999977 222221 1222222111        12443   5677766


Q ss_pred             CCCCcccHHHHHHHHHHHHHH
Q 016486          323 QGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +..+.  ++++|+.|++.|.+
T Consensus       182 ~~~~s--p~~mae~iv~YL~~  200 (207)
T KOG0635|consen  182 HESSS--PEEMAEIIVSYLDN  200 (207)
T ss_pred             CCCCC--HHHHHHHHHHHHhh
Confidence            65544  56889888887764

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.33  E-value=2.2e-06  Score=75.19  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             EEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       191 LIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      |+|+|||||+|+++.||+++|+.+|+.++++++..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~   35 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEI   35 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHH
Confidence            68999999999999999999999999999998765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=5.9e-06  Score=78.15  Aligned_cols=28  Identities=25%  Similarity=0.158  Sum_probs=25.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ++|+-|+|.|+.||||||+++.|++.|.
T Consensus         1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~   28 (208)
T COG0125           1 MKGMFIVIEGIDGAGKTTQAELLKERLE   28 (208)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999999994

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.30  E-value=1.3e-05  Score=73.11  Aligned_cols=146  Identities=18%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHH--HHHHHHHHHHHH---hcCCCe
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDS--VVNGECDVLESL---SSHVRA  258 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~--FRe~E~~vL~~L---~~~~~~  258 (388)
                      ..+.+|+++|-||+||||+|..||+.+|+++|+.-+++++.-      ++...++++  .---|..++..|   ...++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~   78 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN------LYEGYDEEYKCHILDEDKVLDELEPLMIEGGN   78 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc------chhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence            457899999999999999999999999999999988876542      111111111  000122333333   223556


Q ss_pred             EEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--c-----c-------cC-HHHHHHHHHHHhHhccccCcEEEEcC
Q 016486          259 VVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--D-----E-------NS-AKEEARRHVKDGKLGYSNADVVVKLQ  323 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--D-----~-------~d-~~e~l~~l~~eR~~~Y~~AD~vV~~d  323 (388)
                      ||-.-|-    -.-++-|=    +.||.|.+|-+.  |     +       .. .-+.+.-++++-...|. +++++..+
T Consensus        79 IVDyHgC----d~Fperwf----dlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~-~~iV~eL~  149 (176)
T KOG3347|consen   79 IVDYHGC----DFFPERWF----DLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS-PKIVVELQ  149 (176)
T ss_pred             EEeeccc----Cccchhhe----eEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC-CcceeecC
Confidence            6654321    23333221    578888888765  1     0       00 01233334444455555 34778787


Q ss_pred             CCCcccHHHHHHHHHHHHHHh
Q 016486          324 GWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       324 ~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      +...+.......+++..+...
T Consensus       150 s~~~Eem~~ni~ri~~w~~~w  170 (176)
T KOG3347|consen  150 SETKEEMESNISRILNWTRMW  170 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHH
Confidence            766542233333444444443

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.29  E-value=5.2e-06  Score=74.25  Aligned_cols=26  Identities=19%  Similarity=0.083  Sum_probs=23.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      |+.|+|+|++||||||+++.|++.+.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            46799999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK13976 thymidylate kinase; Provisional

Probab=98.28  E-value=3.6e-05  Score=72.44  Aligned_cols=24  Identities=21%  Similarity=-0.018  Sum_probs=22.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      -|+|.|+.||||||+++.|++.|.
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~   25 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLS   25 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999984

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.26  E-value=2e-05  Score=72.85  Aligned_cols=151  Identities=16%  Similarity=0.127  Sum_probs=92.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHH-HHHhcC----chhhhhhccCcHHHHHHHHHHHHHHhcCC----
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLSSHV----  256 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lI-E~~~g~----sI~eif~~~Ge~~FRe~E~~vL~~L~~~~----  256 (388)
                      +.++++|.||+|||||-+.+.+.| ++..+.-.++. |.+-+.    .-+++. ..-.+.-+++..++.+.+....    
T Consensus         5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-klp~e~Q~~lq~~Aa~rI~~~~~~ii   83 (189)
T COG2019           5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-KLPLENQRELQAEAAKRIAEMALEII   83 (189)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-cCCHHHHHHHHHHHHHHHHHhhhceE
Confidence            789999999999999999999999 88889865554 433322    334444 2233445555566665555432    


Q ss_pred             ---CeEEEecCCcccccccHH-HHHhhcCCcEEEEEcCccc-------cc-----cCHHHHHHHHHHH-hHhcc--cc--
Q 016486          257 ---RAVVATLGGQQGAAARAD-KWQHLYAGFTVWLSQTEAM-------DE-----NSAKEEARRHVKD-GKLGY--SN--  315 (388)
Q Consensus       257 ---~~VVStGGG~~gav~r~e-nr~~L~~g~VVyLd~~~e~-------D~-----~d~~e~l~~l~~e-R~~~Y--~~--  315 (388)
                         ++.|=|.+|.  ...-|. ..+.|...++|.|..+++.       |.     -+..+.++++.+. |-..|  +.  
T Consensus        84 vDtH~~IkTP~Gy--lpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~  161 (189)
T COG2019          84 VDTHATIKTPAGY--LPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILL  161 (189)
T ss_pred             EeccceecCCCcc--CCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence               3455566665  555554 4577788999999999887       31     1123445444332 22222  21  


Q ss_pred             -CcE-EEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          316 -ADV-VVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       316 -AD~-vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                       |-+ +|.+....   +++.+.+|+..|+.
T Consensus       162 gatVkIV~n~~~~---~e~Aa~eiv~~l~~  188 (189)
T COG2019         162 GATVKIVENHEGD---PEEAAEEIVELLDR  188 (189)
T ss_pred             CCeEEEEeCCCCC---HHHHHHHHHHHHhc
Confidence             333 34444333   56899999887753

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.24  E-value=1.3e-05  Score=89.63  Aligned_cols=41  Identities=27%  Similarity=0.233  Sum_probs=37.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      .+..|.|-|++||||||+++.||++||+.|+|++.+....+
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            45689999999999999999999999999999999987654

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.24  E-value=9.3e-06  Score=74.97  Aligned_cols=26  Identities=4%  Similarity=-0.078  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +++.|+|+|++|||||||.+.|.+.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            56789999999999999999998876

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.23  E-value=1.3e-05  Score=74.62  Aligned_cols=25  Identities=16%  Similarity=0.120  Sum_probs=22.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +++.|+|+|++|||||||.+.|++.
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            5788999999999999999999864

>smart00072 GuKc Guanylate kinase homologues

Probab=98.19  E-value=1.3e-05  Score=72.96  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=23.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++.|+|+|++||||+|+.+.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            5679999999999999999999985

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02924 thymidylate kinase

Probab=98.18  E-value=9.7e-06  Score=76.93  Aligned_cols=31  Identities=19%  Similarity=0.049  Sum_probs=27.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      +..+|+-|+|.|..||||||+++.|++.|..
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~   42 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKG   42 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4456889999999999999999999999953

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.18  E-value=1.7e-05  Score=74.14  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---------------------CcceechhHHHHHhcCchhhhhhccCcHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---------------------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVN  243 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---------------------~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe  243 (388)
                      +|.-|+|.|++|+|||||.+.|=+..+                     |.|++-+++-+......+-||-.-.| ..+--
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~g-nyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHG-NYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcC-CcccC
Confidence            688899999999999999999987664                     55666555433333233434433333 22211


Q ss_pred             HHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHHHHHhH---hc
Q 016486          244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRHVKDGK---LG  312 (388)
Q Consensus       244 ~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l~~eR~---~~  312 (388)
                      .-..+-+.+.....+++-.. . ||+   ...+..+...+.|||..|--+        .+.+..+.+.++++.-.   .+
T Consensus        82 ~~~~ve~~~~~G~~vildId-~-qGa---~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~  156 (191)
T COG0194          82 SREPVEQALAEGKDVILDID-V-QGA---LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISH  156 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEEe-h-HHH---HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence            11222333333344444322 1 111   223344445778888877543        13333455555554322   34


Q ss_pred             cccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          313 YSNADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       313 Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +...|++|.+++.     +..+.++...+..
T Consensus       157 ~~~fdyvivNdd~-----e~a~~~l~~ii~a  182 (191)
T COG0194         157 ADEFDYVIVNDDL-----EKALEELKSIILA  182 (191)
T ss_pred             HHhCCEEEECccH-----HHHHHHHHHHHHH
Confidence            5568999988864     3566655555543

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.16  E-value=1.7e-06  Score=89.64  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh--HHH-HHhcCchhhhhhccCcHHHHHHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLE-TFAKQTIDSWMLAEGSDSVVNGE  245 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~--lIE-~~~g~sI~eif~~~Ge~~FRe~E  245 (388)
                      ...+.+|+|+|++|+|||++++.||+.++.+|++.|.  +++ ...|+.+.+++...++.+|+..+
T Consensus        44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~  109 (441)
T TIGR00390        44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVK  109 (441)
T ss_pred             ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999994  454 46677888888777777766444

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK06696 uridine kinase; Validated

Probab=98.15  E-value=1.7e-05  Score=74.40  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCccee--chhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS--TKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID--~D~lI  221 (388)
                      +...|.|.|.+||||||+++.|++.|   |.+.+-  +|+++
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            35679999999999999999999999   666654  88875

>PRK12338 hypothetical protein; Provisional

Probab=98.15  E-value=3.3e-05  Score=77.57  Aligned_cols=42  Identities=26%  Similarity=0.156  Sum_probs=34.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcce-echhHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAK  226 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-D~D~lIE~~~g  226 (388)
                      ++..|+|.|.+||||||+|+.||++||+.++ ++|.+.+.+.+
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            4568999999999999999999999999988 56665554444

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=98.13  E-value=1.9e-06  Score=70.04  Aligned_cols=90  Identities=19%  Similarity=0.395  Sum_probs=77.5

Q ss_pred             CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (388)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~  158 (388)
                      +.|.|++...+|.+.+.+++.+....+|+.|+-..+++.|.++..++..-.+..++||..|+|.|.-|.+.+..+.+..+
T Consensus         2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~   81 (92)
T cd06468           2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA   81 (92)
T ss_pred             ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence            57999999999999999998877678999999999999998866455554566689999999999999999999989988


Q ss_pred             ccCCCCCCchh
Q 016486          159 KQDPELKWPDI  169 (388)
Q Consensus       159 ~~~~~~~wp~~  169 (388)
                      +.+. ..||.+
T Consensus        82 K~~~-~~W~~L   91 (92)
T cd06468          82 KKKE-KKWESL   91 (92)
T ss_pred             eCCC-CccCcc
Confidence            8876 578765

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=98.11  E-value=4.9e-05  Score=71.09  Aligned_cols=151  Identities=17%  Similarity=0.196  Sum_probs=90.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-------chhhhhhccCcHHHHHHHHHHHHH-Hhc-C
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-------TIDSWMLAEGSDSVVNGECDVLES-LSS-H  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-------sI~eif~~~Ge~~FRe~E~~vL~~-L~~-~  255 (388)
                      +...||++|-|||||-|+...+++.+||..+++++++.+....       -|.+++++ |.-.=-++-..+|+. +.+ .
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~-G~iVP~ei~~~LL~~am~~~~   85 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKN-GDLVPVEITLSLLEEAMRSSG   85 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHc-CCcCcHHHHHHHHHHHHHhcC
Confidence            4567999999999999999999999999999999998877644       13333332 322111222233322 211 1


Q ss_pred             C-CeEEEecCCcccccccHHHHHhhc------CCcEEEEEcCccc--------c-----ccC----HHHHHHHHHHHhHh
Q 016486          256 V-RAVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAM--------D-----ENS----AKEEARRHVKDGKL  311 (388)
Q Consensus       256 ~-~~VVStGGG~~gav~r~enr~~L~------~g~VVyLd~~~e~--------D-----~~d----~~e~l~~l~~eR~~  311 (388)
                      + +..+-.|     -+-..+++..+.      ..+++|+|++.++        +     .++    .+.++....+.+.|
T Consensus        86 ~~~~fLIDG-----yPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~P  160 (195)
T KOG3079|consen   86 DSNGFLIDG-----YPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLP  160 (195)
T ss_pred             CCCeEEecC-----CCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchH
Confidence            1 2233334     266666665443      2689999999988        1     122    23333333334443


Q ss_pred             ---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          312 ---GYSNADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       312 ---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                         +|+..+.+..++....  +++|..++...+..
T Consensus       161 vi~~~e~kg~l~~i~a~~~--~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  161 VIEYYEKKGKLLKINAERS--VDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHHccCcEEEecCCCC--HHHHHHHHHHHhhc
Confidence               5666444445554433  56888888777653

>PRK07667 uridine kinase; Provisional

Probab=98.09  E-value=2.4e-05  Score=72.09  Aligned_cols=38  Identities=8%  Similarity=0.035  Sum_probs=32.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETF  224 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~  224 (388)
                      ..|.|.|.+||||||+++.|++.|+     ...++.|++....
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~   60 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER   60 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence            5788999999999999999999874     4599999976443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.07  E-value=8.1e-05  Score=71.10  Aligned_cols=129  Identities=18%  Similarity=0.186  Sum_probs=78.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCc---ceechhHHHHHhcCchhh--hh-----hccCcHHHHHHHHHHHHHHhc--
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFAKQTIDS--WM-----LAEGSDSVVNGECDVLESLSS--  254 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~---fID~D~lIE~~~g~sI~e--if-----~~~Ge~~FRe~E~~vL~~L~~--  254 (388)
                      .-|-|.|.+||||||+++.|++.|+-.   .|..|++.......+..+  ..     .....+.|.+    -|..|..  
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~----~L~~L~~g~   84 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIE----HLKDLKQGK   84 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHH----HHHHHHcCC
Confidence            467789999999999999999999955   888898876444333321  11     1122233322    2222221  


Q ss_pred             ----------------------CCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccc--------c----ccCH
Q 016486          255 ----------------------HVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAM--------D----ENSA  298 (388)
Q Consensus       255 ----------------------~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~--------D----~~d~  298 (388)
                                            ..++||-.|=-    ++.+   +.|+.  ++.||++.+.+.        |    +.++
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~----~l~d---~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~  157 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGIL----LLYD---ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDL  157 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccc----cccc---HHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence                                  13467777733    4444   23333  799999999877        2    3444


Q ss_pred             HHHHHHHHHHhHhcc-------cc-CcEEEEcCCCC
Q 016486          299 KEEARRHVKDGKLGY-------SN-ADVVVKLQGWD  326 (388)
Q Consensus       299 ~e~l~~l~~eR~~~Y-------~~-AD~vV~~d~~s  326 (388)
                      ...+.+.....+|.|       ++ ||++|......
T Consensus       158 e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n  193 (218)
T COG0572         158 ESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKN  193 (218)
T ss_pred             HHHHHHHHHhhChhhhhccCcccccceEEeecCCcc
Confidence            444444444566665       23 89988777644

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.07  E-value=1.5e-05  Score=72.29  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=24.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +++.|+|+|++||||+||.+.|.+.+.
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            468899999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=98.05  E-value=2.5e-06  Score=71.13  Aligned_cols=82  Identities=18%  Similarity=0.375  Sum_probs=69.7

Q ss_pred             ccCCCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-
Q 016486           74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-  152 (388)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-  152 (388)
                      +|+.+.-|+|+-...||++++.++..  ..++|+.|+-..++|.|.++  |.  .+|+ ++||..|+|.|..|.++|.. 
T Consensus         1 ~~~~~~~y~W~QT~~eV~v~i~lp~~--~~~kdv~V~i~~~~l~V~~~--g~--~~l~-G~L~~~I~~destWtled~k~   73 (93)
T cd06494           1 VPCKTPWGCWYQTMDEVFIEVNVPPG--TRAKDVKCKLGSRDISLAVK--GQ--EVLK-GKLFDSVVADECTWTLEDRKL   73 (93)
T ss_pred             CCccCCCcEEEeEcCEEEEEEECCCC--CceeeEEEEEEcCEEEEEEC--CE--EEEc-CcccCccCcccCEEEEECCcE
Confidence            35678899999999999999998874  38999999999999999873  32  3777 89999999999999999988 


Q ss_pred             HHHHhhccCC
Q 016486          153 LVINLKKQDP  162 (388)
Q Consensus       153 ~v~~~~~~~~  162 (388)
                      +.+.+.|...
T Consensus        74 l~I~L~K~~~   83 (93)
T cd06494          74 IRIVLTKSNR   83 (93)
T ss_pred             EEEEEEeCCC
Confidence            5777777653

Little is known about the function of the proteins in this subgroup.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.00  E-value=1.1e-05  Score=66.95  Aligned_cols=22  Identities=32%  Similarity=0.228  Sum_probs=21.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhc
Q 016486          189 IFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      |+|.|.+|||||||++.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999

...

>PRK06761 hypothetical protein; Provisional

Probab=97.99  E-value=1.5e-05  Score=78.67  Aligned_cols=117  Identities=9%  Similarity=-0.060  Sum_probs=65.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCch----hhhhhcc-CcHHHHHH---HHHHHHHH-hcCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI----DSWMLAE-GSDSVVNG---ECDVLESL-SSHV  256 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI----~eif~~~-Ge~~FRe~---E~~vL~~L-~~~~  256 (388)
                      ++.|+|+|++||||||+++.|++.|+...++.+.+++.....+.    ...|..+ -....+..   ...+.++. ....
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            46799999999999999999999998765555443221110000    0011110 00011111   11122222 2233


Q ss_pred             CeEEEecCCcccccccHHHHHhhcC-----CcEEEEEcCccccccCHHHHHHHHHHHhHhcccc
Q 016486          257 RAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSN  315 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~  315 (388)
                      .+|+.|.+      +++.+++.++.     .-+-+++ ..      +.+.+++++..|..+|++
T Consensus        83 ~~i~~~~~------l~~~yr~~~~~~~~~~~~v~~~h-~~------p~e~i~~R~~~rw~~f~~  133 (282)
T PRK06761         83 YYLLPYRK------IKNEFGDQFSDELFNDISKNDIY-EL------PFDKNTELITDRWNDFAE  133 (282)
T ss_pred             eEEEEehh------hhHHHhhhhhhhhcccceeeeee-cC------CHHHHHHHHHHHHHHHHH
Confidence            56777773      55666666552     2355554 22      367899999999999987

>COG0645 Predicted kinase [General function prediction only]

Probab=97.99  E-value=4.6e-05  Score=70.21  Aligned_cols=101  Identities=15%  Similarity=0.027  Sum_probs=62.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCch-----hhhhhc-cCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI-----DSWMLA-EGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI-----~eif~~-~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      +-+++.|.||+||||+++.|++.||...|.+|.......|.+.     ..++.. .....|-++..... .+.+.+..||
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~-l~l~~G~~VV   80 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAE-LLLSSGHSVV   80 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHH-HHHhCCCcEE
Confidence            4578999999999999999999999999999998877777321     111111 11122332222222 2334455666


Q ss_pred             EecCCcccccccHHHHHhhc----C-C---cEEEEEcCccc
Q 016486          261 ATLGGQQGAAARADKWQHLY----A-G---FTVWLSQTEAM  293 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~----~-g---~VVyLd~~~e~  293 (388)
                      ..++     ..++..|+...    . |   +.|++.++.++
T Consensus        81 lDa~-----~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v  116 (170)
T COG0645          81 LDAT-----FDRPQERALARALARDVGVAFVLIRLEAPEEV  116 (170)
T ss_pred             Eecc-----cCCHHHHHHHHHHHhccCCceEEEEcCCcHHH
Confidence            6553     46666665543    2 3   35677766654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.97  E-value=2.7e-05  Score=71.42  Aligned_cols=33  Identities=27%  Similarity=0.210  Sum_probs=27.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC---Cc------ceechhHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG---YT------PLSTKELL  221 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG---~~------fID~D~lI  221 (388)
                      |.|.|++||||||+|+.|+..|+   ..      ++..|.+.
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            78999999999999999999997   32      55566553

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.92  E-value=5e-05  Score=80.81  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      +...|+++|.|||||||+++.+++.+|+..|+.|.+
T Consensus       368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l  403 (526)
T TIGR01663       368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL  403 (526)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence            356799999999999999999999999999999986

Note that the EC number for the kinase function is: 2.7.1.78

>PTZ00301 uridine kinase; Provisional

Probab=97.92  E-value=0.00015  Score=68.44  Aligned_cols=38  Identities=13%  Similarity=0.048  Sum_probs=29.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lIE  222 (388)
                      +...|-|.|.+||||||+++.|+++|.       ...+..|.+..
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            345688999999999999999998872       23566788764

>PLN02840 tRNA dimethylallyltransferase

Probab=97.87  E-value=2.9e-05  Score=80.53  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHH
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVV  242 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FR  242 (388)
                      ...++..|+|+|++||||||++..||+.++..+|+.|.+.              ++..+.     .+-+.-+...-..|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~   96 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF   96 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence            4445678999999999999999999999999999999851              222221     111122333445676


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCC
Q 016486          243 NGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       243 e~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      +.-.++++.+.+.+.+.|-+||-
T Consensus        97 ~~A~~~I~~i~~rgkiPIvVGGT  119 (421)
T PLN02840         97 DDARRATQDILNRGRVPIVAGGT  119 (421)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCc
Confidence            66677788887766665555653

>PLN02348 phosphoribulokinase

Probab=97.86  E-value=4.8e-05  Score=78.27  Aligned_cols=36  Identities=19%  Similarity=0.076  Sum_probs=30.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCC--------------------cceechhHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGY--------------------TPLSTKELL  221 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~--------------------~fID~D~lI  221 (388)
                      ...|-|.|.+||||||+++.|++.||-                    ..|.+|+++
T Consensus        49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence            346779999999999999999999973                    368889886

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.86  E-value=5.1e-05  Score=75.68  Aligned_cols=81  Identities=17%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGE  245 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E  245 (388)
                      ++..|+|+|++|||||+++..||+.++..+|+.|.+-              ++..|.     ++-++-+......|.+.-
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a   82 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA   82 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence            3467999999999999999999999999999999951              111111     111111222334566655


Q ss_pred             HHHHHHHhcCCCeEEEecCC
Q 016486          246 CDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       246 ~~vL~~L~~~~~~VVStGGG  265 (388)
                      ...++++...+..+|-+||.
T Consensus        83 ~~~i~~i~~~gk~pIlvGGt  102 (307)
T PRK00091         83 LAAIADILARGKLPILVGGT  102 (307)
T ss_pred             HHHHHHHHhCCCCEEEECcH
Confidence            66677666555554445543

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.84  E-value=7.5e-05  Score=73.06  Aligned_cols=33  Identities=18%  Similarity=0.046  Sum_probs=28.9

Q ss_pred             EEEEecCCCchHHHHHHHHHhc---CCcceechhHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL  221 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lI  221 (388)
                      |.|+|.+||||||+++.|+..+   +...+.+|++.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            6799999999999999999988   45688888774

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.83  E-value=0.00026  Score=67.48  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=32.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC----CcceechhHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLETFA  225 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG----~~fID~D~lIE~~~  225 (388)
                      .+.|+|-||-|+||||++++||++||    +..++-|.+++..+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY   47 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFY   47 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHH
Confidence            47899999999999999999999999    44455566655544

>PRK07429 phosphoribulokinase; Provisional

Probab=97.82  E-value=9e-05  Score=74.47  Aligned_cols=37  Identities=24%  Similarity=0.158  Sum_probs=32.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lI  221 (388)
                      +...|.|+|.+||||||+++.|+..|+   ...+..|+++
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            345788999999999999999999998   5678888875

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.80  E-value=5.4e-05  Score=58.87  Aligned_cols=29  Identities=31%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             EEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486          189 IFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~  217 (388)
                      |+|+|.+||||||+++.|++.|   ++.+++.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence            7899999999999999999994   4555544

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK07933 thymidylate kinase; Validated

Probab=97.80  E-value=0.00013  Score=68.55  Aligned_cols=25  Identities=16%  Similarity=0.106  Sum_probs=23.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +-|+|.|+.||||||+++.|++.|.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~   25 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALE   25 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3599999999999999999999994

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.79  E-value=0.00023  Score=67.61  Aligned_cols=38  Identities=13%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g  226 (388)
                      .|-|+|-.|||||||.+.+- ++|++.||.|.+-.+...
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~   40 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVE   40 (225)
T ss_pred             EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhc
Confidence            36689999999999999776 899999999999777664

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.78  E-value=0.00011  Score=70.23  Aligned_cols=144  Identities=16%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC---Ccceec--hhHHHHHhcCchhhhhhccCcHHHH-HHHHHHHHHHhcCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG---YTPLST--KELLETFAKQTIDSWMLAEGSDSVV-NGECDVLESLSSHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~--D~lIE~~~g~sI~eif~~~Ge~~FR-e~E~~vL~~L~~~~~~VV  260 (388)
                      +-|+|+|.|||||||.++.||+.|.   +..++.  |-.+--....+.+-+ ++.-++.|. ..++ ++-+..+ .-.||
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~-ke~yres~~ks~~r-lldSalk-n~~VI   78 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPIL-KEVYRESFLKSVER-LLDSALK-NYLVI   78 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchH-HHHHHHHHHHHHHH-HHHHHhc-ceEEE
Confidence            3589999999999999999999994   444443  322221122333322 111122232 2333 3322222 23666


Q ss_pred             EecCCcccccccHHHHHhhc-------C-CcEEEEEcCccc----c----ccCHHHHHHHHHHH---hHhccc--cCcEE
Q 016486          261 ATLGGQQGAAARADKWQHLY-------A-GFTVWLSQTEAM----D----ENSAKEEARRHVKD---GKLGYS--NADVV  319 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~-------~-g~VVyLd~~~e~----D----~~d~~e~l~~l~~e---R~~~Y~--~AD~v  319 (388)
                      +..--     +-..-|..|.       . ..+|||.+|+++    +    ++=+.+-++++|++   =.+-|.  .+-++
T Consensus        79 vDdtN-----YyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEePn~~~rWDspll~  153 (261)
T COG4088          79 VDDTN-----YYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLV  153 (261)
T ss_pred             Eeccc-----HHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCCCCCccccCceEE
Confidence            64421     2222232222       1 459999999988    1    22234445555443   333443  24466


Q ss_pred             EEcCCCCcccHHHHHHHHHHHHH
Q 016486          320 VKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       320 V~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                      |+.+....    ++.+-|...+.
T Consensus       154 id~~d~~t----~~IDfiesvl~  172 (261)
T COG4088         154 IDDSDVST----EVIDFIESVLR  172 (261)
T ss_pred             Eecccccc----cchhHHHHHHH
Confidence            66544333    34444444443

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.77  E-value=0.0001  Score=68.00  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc---CCcceechhHH
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL  221 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lI  221 (388)
                      +.-++..|+|.|.+||||||++..+...+   ++..||.|++.
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r   53 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR   53 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence            33467789999999999999999999987   78999999974

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.77  E-value=0.0001  Score=68.61  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=32.0

Q ss_pred             EEEEecCCCchHHHHHHHHHhc-CCcceechhHHHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLET  223 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~  223 (388)
                      |.|.|.+||||||+++.|++.+ +..+|.+|+++..
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            7899999999999999999999 7999999998643

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.77  E-value=3.1e-05  Score=80.55  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=45.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechh--HHH-HHhcCchhhhhhccCcHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLE-TFAKQTIDSWMLAEGSDSV  241 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~--lIE-~~~g~sI~eif~~~Ge~~F  241 (388)
                      .+.+|+|+|++|+|||++|+.||+.++.+|+..|.  +.+ ...|.+..+++....+.+|
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~  108 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAV  108 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999985  343 2556676666665555554

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=97.76  E-value=9.4e-06  Score=84.80  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=65.0

Q ss_pred             hhccCCCCce--eecchhHHHHHhh--------------ccCCCCCCchhhhhhHHhhhhhhhcc-----------CCCe
Q 016486          136 FDKIKPTETI--WYIDEDQLVINLK--------------KQDPELKWPDIVESWESLTAGSMQLL-----------KGTS  188 (388)
Q Consensus       136 ~~~i~~~e~i--w~~d~~~~v~~~~--------------~~~~~~~wp~~~~~W~sl~~~~~~~l-----------~g~~  188 (388)
                      +..++..|.+  ..+||+.+.+.|.              ..+..++||+|   |..+.+.....+           +...
T Consensus       489 ~k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~kt~p~y---~~Vl~~~~~~kltgaeple~~a~knss  565 (595)
T KOG0692|consen  489 EKKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPDY---FQVLERITKHKLTGAEPLESGAIKNSS  565 (595)
T ss_pred             hHhccchhhccccccccccchhhhhHHHhccCCCccccCCCccccccchH---HHHHHHHhhccccccChhhccccccce
Confidence            5566666643  4599999999996              35578999999   887776554333           3468


Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      +|++||.++||||+|+..|++|+|.++|.|
T Consensus       566 m~vigmr~agkttigk~~akeL~~kimdld  595 (595)
T KOG0692|consen  566 MFVIGMREAGKTTIGKPAAKELYWKIMDLD  595 (595)
T ss_pred             eeeehhhhcCceecCccchHHhCeeeeccC
Confidence            999999999999999999999999999986

>PLN02748 tRNA dimethylallyltransferase

Probab=97.75  E-value=7.1e-05  Score=78.64  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcC-----chhhhhhccCcHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVVNGE  245 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~-----sI~eif~~~Ge~~FRe~E  245 (388)
                      ++..|+|+|+.|||||+++..||+.++..+|++|.+              .++..|.     .+-++-+...-..|+..-
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A  100 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA  100 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence            456799999999999999999999999999999975              1222221     111122334445777777


Q ss_pred             HHHHHHHhcCCCeEEEecCC
Q 016486          246 CDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       246 ~~vL~~L~~~~~~VVStGGG  265 (388)
                      ..+++.+...+.+.|-+||-
T Consensus       101 ~~~I~~I~~rgk~PIlVGGT  120 (468)
T PLN02748        101 VPLIEEILSRNGLPVIVGGT  120 (468)
T ss_pred             HHHHHHHHhcCCCeEEEcCh
Confidence            78888887767666666653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.75  E-value=2.4e-05  Score=65.25  Aligned_cols=30  Identities=27%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      |+|.|++|+||||+++.+|+.++++++..|
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~   30 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEID   30 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence            689999999999999999999998886654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.74  E-value=0.00018  Score=65.18  Aligned_cols=28  Identities=32%  Similarity=0.420  Sum_probs=25.5

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      |+|.|++||||||+++.|++.+|+.++.
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~   29 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEVVP   29 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence            8999999999999999999999876664

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.71  E-value=9.9e-05  Score=73.10  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=53.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHHHHHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGECDVL  249 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E~~vL  249 (388)
                      |+|+|++|||||+++..||+.++..+|..|.+-              ++..|.     ++-++-+...-..|...-.+++
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i   81 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAI   81 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHH
Confidence            899999999999999999999999999999851              111111     1112223333456666666777


Q ss_pred             HHHhcCCCeEEEecCC
Q 016486          250 ESLSSHVRAVVATLGG  265 (388)
Q Consensus       250 ~~L~~~~~~VVStGGG  265 (388)
                      +++.+.+..+|-+||-
T Consensus        82 ~~~~~~g~~pi~vGGT   97 (287)
T TIGR00174        82 ADITARGKIPLLVGGT   97 (287)
T ss_pred             HHHHhCCCCEEEEcCc
Confidence            7877766666666664

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.69  E-value=0.00051  Score=68.08  Aligned_cols=128  Identities=15%  Similarity=0.145  Sum_probs=69.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHH-HhcCCCe--EEEe
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQTIDSWMLAEGSDSVVNGECDVLES-LSSHVRA--VVAT  262 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~~~~--VVSt  262 (388)
                      .|+|+|++||||||..+.|-. +||.+||-  =.++.+..                 +    ++.+ -....++  +|..
T Consensus         3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDNlP~~Ll~~l~-----------------~----~~~~~~~~~~~~Ai~iD~   60 (284)
T PF03668_consen    3 LVIITGLSGAGKSTALRALED-LGYYCVDNLPPSLLPQLI-----------------E----LLAQSNSKIEKVAIVIDI   60 (284)
T ss_pred             EEEEeCCCcCCHHHHHHHHHh-cCeeEEcCCcHHHHHHHH-----------------H----HHHhcCCCCceEEEEEeC
Confidence            589999999999999997755 68888773  12222111                 1    1110 0111222  2221


Q ss_pred             -cCCcccccccHHHHHhhcC-C---cEEEEEcCccc-----c------c-cCHHHHHHHHHHHhH---hccccCcEEEEc
Q 016486          263 -LGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM-----D------E-NSAKEEARRHVKDGK---LGYSNADVVVKL  322 (388)
Q Consensus       263 -GGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~-----D------~-~d~~e~l~~l~~eR~---~~Y~~AD~vV~~  322 (388)
                       ++++  ...-.+....|++ +   -+|||+++.++     .      + ......++.+-+||+   ++-+.||++|++
T Consensus        61 R~~~~--~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDT  138 (284)
T PF03668_consen   61 RSREF--FEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDT  138 (284)
T ss_pred             CChHH--HHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEEC
Confidence             2221  1111122233332 3   39999999887     0      0 000112334555554   344559999999


Q ss_pred             CCCCcccHHHHHHHHHHHHH
Q 016486          323 QGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~  342 (388)
                      ++.++.   +..+.|.+.+.
T Consensus       139 s~l~~~---~Lr~~i~~~~~  155 (284)
T PF03668_consen  139 SNLSVH---QLRERIRERFG  155 (284)
T ss_pred             CCCCHH---HHHHHHHHHhc
Confidence            999864   66666666554

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK09087 hypothetical protein; Validated

Probab=97.66  E-value=7.1e-05  Score=71.16  Aligned_cols=36  Identities=11%  Similarity=0.016  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE  222 (388)
                      ..++|.|++|||||++++.+++..+..|++.+.+..
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~   80 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS   80 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence            459999999999999999999999999999975443

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=97.66  E-value=1.5e-05  Score=61.53  Aligned_cols=75  Identities=24%  Similarity=0.519  Sum_probs=62.3

Q ss_pred             ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHH
Q 016486           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (388)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~  156 (388)
                      .|.|.+...+|.+++.+++.+ .+.+|+.|+-.++++.|.+...++...+++.+ ||..|.|.|..|.+++..+.+.
T Consensus         2 ~y~W~Qt~~~V~v~i~~~~~~-~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~-L~~~I~~~~s~~~~~~~~i~i~   76 (79)
T PF04969_consen    2 RYDWYQTDDEVTVTIPVKPVD-ISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGE-LFGEIDPDESTWKVKDNKIEIT   76 (79)
T ss_dssp             SEEEEEESSEEEEEEE-TTTT-SSGGGEEEEEETTEEEEEEEETTSCEEEEEEE-BSS-BECCCEEEEEETTEEEEE
T ss_pred             CeEEEECCCEEEEEEEEcCCC-CChHHeEEEEEeeEEEEEEEccCCceEEEEEE-EeeeEcchhcEEEEECCEEEEE
Confidence            699999999999999997766 67889999999999999988776666666665 9999999999999888765443

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=97.66  E-value=2.2e-05  Score=60.97  Aligned_cols=83  Identities=30%  Similarity=0.567  Sum_probs=70.7

Q ss_pred             ecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccCC
Q 016486           83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP  162 (388)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~  162 (388)
                      |.+...+|.+++.+++..   .+++.|+..++++.|++...++....++.. ||..|.|.+.-|.+++..+.+.+++...
T Consensus         1 W~Q~~~~v~i~v~~~~~~---~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~-L~~~I~~~~s~~~~~~~~l~i~L~K~~~   76 (84)
T cd06463           1 WYQTLDEVTITIPLKDVT---KKDVKVEFTPKSLTVSVKGGGGKEYLLEGE-LFGPIDPEESKWTVEDRKIEITLKKKEP   76 (84)
T ss_pred             CcccccEEEEEEEcCCCC---ccceEEEEecCEEEEEeeCCCCCceEEeeE-ccCccchhhcEEEEeCCEEEEEEEECCC
Confidence            346678999999999876   889999999999999998765666677765 9999999999999999999999998887


Q ss_pred             CCCCchh
Q 016486          163 ELKWPDI  169 (388)
Q Consensus       163 ~~~wp~~  169 (388)
                      +..||.+
T Consensus        77 ~~~W~~l   83 (84)
T cd06463          77 GEWWPRL   83 (84)
T ss_pred             CCCCccc
Confidence            6788865

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.65  E-value=0.00019  Score=64.80  Aligned_cols=21  Identities=19%  Similarity=0.012  Sum_probs=19.6

Q ss_pred             EEecCCCchHHHHHHHHHhcC
Q 016486          191 LVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       191 LIG~~GSGKSTVGr~LAk~LG  211 (388)
                      |.|+.||||||+++.|+++|.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~   21 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALK   21 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            579999999999999999995

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK15453 phosphoribulokinase; Provisional

Probab=97.65  E-value=0.0002  Score=71.06  Aligned_cols=38  Identities=13%  Similarity=0.049  Sum_probs=33.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE  222 (388)
                      ++..|.|+|.+||||||+++.|++.++     ..++++|.++.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            456899999999999999999999885     56899999875

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=97.64  E-value=2.4e-05  Score=62.34  Aligned_cols=83  Identities=27%  Similarity=0.491  Sum_probs=69.4

Q ss_pred             eeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecch-hHHHHHhhc
Q 016486           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK  159 (388)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~-~~~v~~~~~  159 (388)
                      |.|.....+|.+.+.++..-  ..+|+.|+...+++.|.+..   ...+++ +.||..|.|.++.|.+++ ..+.+.++|
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~--~~~dv~v~~~~~~l~v~~~~---~~~~l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K   74 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGT--KSKDVKVEITPKHLKVGVKG---GEPLLD-GELYAKVKVDESTWTLEDGKLLEITLEK   74 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCC--cceeEEEEEEcCEEEEEECC---CCceEc-CcccCceeEcCCEEEEeCCCEEEEEEEE
Confidence            78999999999999987643  47999999999999998863   234444 579999999999999999 888899999


Q ss_pred             cCCCCCCchh
Q 016486          160 QDPELKWPDI  169 (388)
Q Consensus       160 ~~~~~~wp~~  169 (388)
                      .+.+..||.+
T Consensus        75 ~~~~~~W~~L   84 (85)
T cd06467          75 RNEGEWWPSL   84 (85)
T ss_pred             CCCCcccccc
Confidence            8876778865

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=97.59  E-value=3.3e-05  Score=63.39  Aligned_cols=84  Identities=25%  Similarity=0.499  Sum_probs=68.4

Q ss_pred             eeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHHhhc
Q 016486           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVINLKK  159 (388)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~~~~  159 (388)
                      |.|+....||++++.++......+||+.|+-.-++|.|+++  | ..++|+ +.||..|+|.|..|.++|. .+.+.+.+
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~--g-~~~~i~-G~L~~~V~~des~Wtled~~~l~i~L~K   76 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK--G-QPPIID-GELYNEVKVEESSWLIEDGKVVTVNLEK   76 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC--C-CceEEe-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence            78888889999999998776678999999999999999874  3 245666 4999999999999999884 57788888


Q ss_pred             cCCCCCCch
Q 016486          160 QDPELKWPD  168 (388)
Q Consensus       160 ~~~~~~wp~  168 (388)
                      ...+.=||.
T Consensus        77 ~~~~~wW~~   85 (87)
T cd06492          77 INKMEWWSR   85 (87)
T ss_pred             CCCCccccc
Confidence            766555654

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.54  E-value=0.00043  Score=67.85  Aligned_cols=99  Identities=15%  Similarity=0.036  Sum_probs=49.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHHHHH-HHHHHHHhcCCCeEEE
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGE-CDVLESLSSHVRAVVA  261 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E-~~vL~~L~~~~~~VVS  261 (388)
                      -|+|+|.|||||||+++.|++.+.     ..+++-|.+.   ...  ..+.....|...|..- .++.+.| +...+||.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~--~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~   76 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDR--NDYADSKKEKEARGSLKSAVERAL-SKDTIVIL   76 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TT--SSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cch--hhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEE
Confidence            489999999999999999999852     4456644544   111  1122333444444433 3344434 44578887


Q ss_pred             ecCCcccccccHHHHHhhcC----CcEEEEEcCccc
Q 016486          262 TLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM  293 (388)
Q Consensus       262 tGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~  293 (388)
                      .+.-. =--+|-+.+..-+.    ..+||++++.+.
T Consensus        77 Dd~nY-iKg~RYelyclAr~~~~~~c~i~~~~~~e~  111 (270)
T PF08433_consen   77 DDNNY-IKGMRYELYCLARAYGTTFCVIYCDCPLET  111 (270)
T ss_dssp             -S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHH
T ss_pred             eCCch-HHHHHHHHHHHHHHcCCCEEEEEECCCHHH
Confidence            66431 00112222322222    349999999987

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.54  E-value=0.0029  Score=65.29  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=42.5

Q ss_pred             hhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhc
Q 016486          170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAK  226 (388)
Q Consensus       170 ~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g  226 (388)
                      .+.|+-+...+.+. -.++|+|+|.+||||||+++.||+.+|..++.  +-+++++..+
T Consensus       204 ~~~w~~i~~~vr~~-~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~  261 (399)
T PRK08099        204 FRYWEYIPTEVRPF-FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLG  261 (399)
T ss_pred             HHHHHhcCHHHhhC-CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhc
Confidence            36788888655444 34679999999999999999999999988765  3445555443

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.53  E-value=0.00013  Score=64.02  Aligned_cols=24  Identities=21%  Similarity=0.113  Sum_probs=21.8

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCC
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      |+|+|++||||||+++.|++.+..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCc
Confidence            789999999999999999998653

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.53  E-value=0.001  Score=70.05  Aligned_cols=43  Identities=26%  Similarity=0.230  Sum_probs=37.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc-ceechhHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQ  227 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-fID~D~lIE~~~g~  227 (388)
                      ++..|+++|++|+||||++..||.++|+. ++.+|.+.+.+.++
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~  297 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM  297 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence            46789999999999999999999999998 77999987655554

>PLN02772 guanylate kinase

Probab=97.53  E-value=0.0015  Score=67.43  Aligned_cols=26  Identities=15%  Similarity=0.089  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .++.|+|+|++|+||+||.+.|.+.+
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            45789999999999999999998865

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0005  Score=74.17  Aligned_cols=106  Identities=17%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC---chhhhh-------------------hccCc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ---TIDSWM-------------------LAEGS  238 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~---sI~eif-------------------~~~Ge  238 (388)
                      ...++-|.|-|+||||||.+|+.+|..||++|+..  -++|..+.|.   .|++.|                   .-..+
T Consensus       220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe  299 (802)
T KOG0733|consen  220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE  299 (802)
T ss_pred             CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence            34567899999999999999999999999999985  3444433332   123222                   23355


Q ss_pred             HHHHHHHHHHHHHHhc-C---------CCeEEEecCCcccccccHHHHH-hhcC----CcEEEEEcCccc
Q 016486          239 DSVVNGECDVLESLSS-H---------VRAVVATLGGQQGAAARADKWQ-HLYA----GFTVWLSQTEAM  293 (388)
Q Consensus       239 ~~FRe~E~~vL~~L~~-~---------~~~VVStGGG~~gav~r~enr~-~L~~----g~VVyLd~~~e~  293 (388)
                      .+=|++|+++..+|+. +         +.-|+.-|     +.-||+..+ .|+.    +.-|.|.+|-+.
T Consensus       300 ~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg-----ATnRPDslDpaLRRaGRFdrEI~l~vP~e~  364 (802)
T KOG0733|consen  300 EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG-----ATNRPDSLDPALRRAGRFDREICLGVPSET  364 (802)
T ss_pred             hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe-----cCCCCcccCHHHhccccccceeeecCCchH
Confidence            6778999999888752 1         22344434     345666553 4553    458999999864

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.48  E-value=0.0011  Score=66.13  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=34.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc-ceechhHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF  224 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-fID~D~lIE~~  224 (388)
                      .+..|++.|++||||||+|+.||++||++ ++.+|.+.+.+
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~  131 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM  131 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence            45789999999999999999999999998 68888876443

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=97.47  E-value=6.7e-05  Score=63.68  Aligned_cols=83  Identities=19%  Similarity=0.439  Sum_probs=67.7

Q ss_pred             CCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-HHH
Q 016486           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-LVI  155 (388)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-~v~  155 (388)
                      .+..|.|+-.-.||++++.+|.. +..+||+.|+-.-++|.|.++..++..++|+ +.||..|++.|..|.++|.. +.+
T Consensus         3 ~~e~Y~WtQTl~eV~V~i~lp~~-~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~-G~L~~~V~~des~Wtled~~~l~I   80 (102)
T cd06495           3 VRENYTWSQDYTDVEVRVPVPKD-VVKGRQVSVDLQSSSIRVSVRDGGGEKVLME-GEFTHKINTENSLWSLEPGKCVLL   80 (102)
T ss_pred             cCCceEEEeECCeEEEEEECCCC-CccceEEEEEEEcCEEEEEEecCCCCceEEe-CcccCcccCccceEEEeCCCEEEE
Confidence            45689999999999999999986 4468999999999999998864334345555 59999999999999998855 567


Q ss_pred             HhhccC
Q 016486          156 NLKKQD  161 (388)
Q Consensus       156 ~~~~~~  161 (388)
                      .+.+..
T Consensus        81 ~L~K~~   86 (102)
T cd06495          81 SLSKCS   86 (102)
T ss_pred             EEEECC
Confidence            777663

Little is known about the function of the proteins in this subgroup.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.41  E-value=0.00061  Score=65.25  Aligned_cols=61  Identities=11%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC-----cceechhHHHHHhcC-chhhhhhccCcHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQ-TIDSWMLAEGSDSVVNGE  245 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~-----~fID~D~lIE~~~g~-sI~eif~~~Ge~~FRe~E  245 (388)
                      .+..|++||.|+.|||++|+.|++.|.|     ..+...++..+..+. .-.++|....+++.+..|
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~   77 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLRE   77 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHH
Confidence            3567999999999999999999988864     667778888888876 345667655566554433

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.41  E-value=0.00033  Score=66.25  Aligned_cols=33  Identities=21%  Similarity=0.159  Sum_probs=27.8

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI  221 (388)
                      |-|.|.+||||||+++.|+..|.       ..++.+|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            67899999999999999999983       3567778774

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=97.37  E-value=9e-05  Score=59.98  Aligned_cols=83  Identities=20%  Similarity=0.482  Sum_probs=67.0

Q ss_pred             eeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHHhhc
Q 016486           81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVINLKK  159 (388)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~~~~  159 (388)
                      |+|+....+|++.+.++..  ...+|+.|+-...++.|.++ ++  ..++ .++||..|.|.|..|.++++ .+.+.+++
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~--~~~~dv~v~~~~~~l~v~~~-~~--~~~~-~g~L~~~I~~d~Stw~i~~~~~l~i~L~K   74 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPED--TTKEDIRIKFLPDHISIALK-DQ--APLL-EGKLYSSIDHESSTWIIKENKSLEVSLIK   74 (85)
T ss_pred             CccEEeCCEEEEEEECCCC--CChhhEEEEEecCEEEEEeC-CC--CeEE-eCcccCcccccCcEEEEeCCCEEEEEEEE
Confidence            7888889999999999742  37899999999999999874 22  2333 67999999999999998666 48888888


Q ss_pred             cCCCCCCchh
Q 016486          160 QDPELKWPDI  169 (388)
Q Consensus       160 ~~~~~~wp~~  169 (388)
                      .+.+..||.+
T Consensus        75 ~~~~~~W~~L   84 (85)
T cd06493          75 KDEGPTWPEL   84 (85)
T ss_pred             CCCCcccccc
Confidence            8777678765

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>COG4639 Predicted kinase [General function prediction only]

Probab=97.34  E-value=0.00096  Score=61.18  Aligned_cols=98  Identities=16%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE-EecCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV-ATLGG  265 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV-StGGG  265 (388)
                      .-++|+|.+||||||.++..  -+....++.|++-.....-.-.+......+..++.++..+-+.+....-.|| ||-  
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn--   78 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN--   78 (168)
T ss_pred             eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc--
Confidence            45899999999999999852  3467888888876544211122223333456677666666556666556777 433  


Q ss_pred             cccccccHHHHHhhc----C-C---cEEEEEcCccc
Q 016486          266 QQGAAARADKWQHLY----A-G---FTVWLSQTEAM  293 (388)
Q Consensus       266 ~~gav~r~enr~~L~----~-g---~VVyLd~~~e~  293 (388)
                           .+++.|+.+.    + |   +.||+|.|.+.
T Consensus        79 -----~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~  109 (168)
T COG4639          79 -----LRREDRRKLIDLAKAYGYKIYAIVFDTPLEL  109 (168)
T ss_pred             -----CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHH
Confidence                 5666665443    2 3   47888888753

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.32  E-value=0.00025  Score=57.50  Aligned_cols=28  Identities=32%  Similarity=0.404  Sum_probs=25.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      +.+++|+|++|+||||+++.||..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            5789999999999999999999999865

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.29  E-value=0.00039  Score=61.67  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             HHhhhhhhhcc-CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          174 ESLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       174 ~sl~~~~~~~l-~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      ..++..+.+.+ .+..|+|.|.+||||||+.|.+++.||+.
T Consensus         9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150         9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            34444444444 46789999999999999999999999974

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.28  E-value=0.00024  Score=60.96  Aligned_cols=29  Identities=31%  Similarity=0.379  Sum_probs=26.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      +|+|+|++|+|||++++.||+.++.+++.
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            48999999999999999999999988754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05439 pantothenate kinase; Provisional

Probab=97.28  E-value=0.0015  Score=65.51  Aligned_cols=36  Identities=19%  Similarity=0.076  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI  221 (388)
                      ...|.|.|.+||||||+++.|++.|+       ...+.+|+++
T Consensus        86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            34688999999999999999999875       3467788875

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.27  E-value=0.0012  Score=65.64  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=28.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI  221 (388)
                      +..|-|.|++||||||+++.|+..+.       ...+.+|.+.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            45677999999999999999988774       3456777654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=97.27  E-value=0.0018  Score=63.74  Aligned_cols=129  Identities=14%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHh-cCCCe--EEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLS-SHVRA--VVA  261 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~-~~~~~--VVS  261 (388)
                      .-|++.|++|||||+..+.|- -+||.++|-  =+++.+..                 +    ++.... ....+  ||-
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lE-DlGyycvDNLPp~Llp~~~-----------------~----~~~~~~~~~~kvAv~iD   59 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLE-DLGYYCVDNLPPQLLPKLA-----------------D----LMLTLESRITKVAVVID   59 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHH-hcCeeeecCCCHHHHHHHH-----------------H----HHhhcccCCceEEEEEe
Confidence            358899999999999999775 468888773  12222222                 1    111111 11222  222


Q ss_pred             e-cCCcccccccHHHHHhhcC-C----cEEEEEcCccc------c-------ccCHHHHHHHHHHHhH---hccccCcEE
Q 016486          262 T-LGGQQGAAARADKWQHLYA-G----FTVWLSQTEAM------D-------ENSAKEEARRHVKDGK---LGYSNADVV  319 (388)
Q Consensus       262 t-GGG~~gav~r~enr~~L~~-g----~VVyLd~~~e~------D-------~~d~~e~l~~l~~eR~---~~Y~~AD~v  319 (388)
                      . ++.+  .-.-.+....|+. +    -++||+++.++      +       .... .-+..+-.||+   |....||++
T Consensus        60 iRs~~~--~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~-~l~~~I~~ERelL~pLk~~A~~v  136 (286)
T COG1660          60 VRSREF--FGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDG-LLLEAIAKERELLAPLREIADLV  136 (286)
T ss_pred             cccchh--HHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccC-cHHHHHHHHHHHHHHHHHHhhhE
Confidence            1 1111  0111122334442 2    39999999887      1       0110 13444555564   556669999


Q ss_pred             EEcCCCCcccHHHHHHHHHHHHHH
Q 016486          320 VKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       320 V~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      |+++..++.   +..+.|...+..
T Consensus       137 IDTs~ls~~---~Lr~~i~~~f~~  157 (286)
T COG1660         137 IDTSELSVH---ELRERIRTRFLG  157 (286)
T ss_pred             eecccCCHH---HHHHHHHHHHcc
Confidence            999999864   777777777664

>PRK06620 hypothetical protein; Validated

Probab=97.24  E-value=0.0011  Score=62.59  Aligned_cols=103  Identities=6%  Similarity=0.056  Sum_probs=55.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHH-HHHHHHHhcCCC-eEEEecC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGE-CDVLESLSSHVR-AVVATLG  264 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E-~~vL~~L~~~~~-~VVStGG  264 (388)
                      ..++|.|++|+|||++++++++..+..++......++..+. . +++--++-+.+.+.+ ..++..+...+. +|+++--
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~-~-d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~  122 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEK-Y-NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSD  122 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhc-C-CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            57999999999999999999999987776644433332221 1 111111111222111 122333333344 4444321


Q ss_pred             CcccccccHHHHHhhcCCcEEEEEcCcc
Q 016486          265 GQQGAAARADKWQHLYAGFTVWLSQTEA  292 (388)
Q Consensus       265 G~~gav~r~enr~~L~~g~VVyLd~~~e  292 (388)
                      ......+ ++-+-.+..|.++-|..+.+
T Consensus       123 ~p~~l~l-~~L~SRl~~gl~~~l~~pd~  149 (214)
T PRK06620        123 KSRNFTL-PDLSSRIKSVLSILLNSPDD  149 (214)
T ss_pred             Cccccch-HHHHHHHhCCceEeeCCCCH
Confidence            1100122 45555666788998887764

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.24  E-value=0.0019  Score=65.18  Aligned_cols=81  Identities=11%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcCchh--hhh---hccCcHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQTID--SWM---LAEGSDSVVNGE  245 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~sI~--eif---~~~Ge~~FRe~E  245 (388)
                      +.+.|+++|..|+|||-|+--||.+++-..|..|.+              +++.-|.+-.  ..+   .+.-...|+..-
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            567899999999999999999999999888888876              1222222110  011   233445788877


Q ss_pred             HHHHHHHhcCCCeEEEecCC
Q 016486          246 CDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       246 ~~vL~~L~~~~~~VVStGGG  265 (388)
                      ..+.+.+.+.+.+=|..||+
T Consensus        86 ~~aie~I~~rgk~PIv~GGs  105 (348)
T KOG1384|consen   86 SRAIEEIHSRGKLPIVVGGS  105 (348)
T ss_pred             HHHHHHHHhCCCCCEEeCCc
Confidence            88888888877665555665

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.21  E-value=0.0012  Score=65.95  Aligned_cols=79  Identities=8%  Similarity=0.098  Sum_probs=54.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGEC  246 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E~  246 (388)
                      +..|+|+|+.|||||.+|-.||++. -..|+.|.+-              ++..+.     .+-+.-+...-..|.+.-.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~   82 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGK-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEAL   82 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC-CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHH
Confidence            3579999999999999999999995 5999999872              111111     1112223344456777777


Q ss_pred             HHHHHHhcCCCeEEEecCC
Q 016486          247 DVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       247 ~vL~~L~~~~~~VVStGGG  265 (388)
                      ++++++...+...|-|||-
T Consensus        83 ~~i~~i~~~gk~PilvGGT  101 (300)
T PRK14729         83 KIIKELRQQKKIPIFVGGS  101 (300)
T ss_pred             HHHHHHHHCCCCEEEEeCc
Confidence            7888887766666666654

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.15  E-value=0.00053  Score=73.14  Aligned_cols=79  Identities=23%  Similarity=0.215  Sum_probs=59.4

Q ss_pred             cchhhhhhhhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHH
Q 016486          126 FITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALE  205 (388)
Q Consensus       126 ~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~  205 (388)
                      .....+.+..|++-+|      ---++|++-.|+...       ++-|-..-+.+.+.+.++...|+|++||||||.-+.
T Consensus        63 ~~~~d~~elW~eKy~P------~t~eeLAVHkkKI~e-------Vk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkv  129 (634)
T KOG1970|consen   63 NEKEDEFELWVEKYKP------RTLEELAVHKKKISE-------VKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKV  129 (634)
T ss_pred             CCCccccchhHHhcCc------ccHHHHhhhHHhHHH-------HHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHH
Confidence            3445567778888888      334666666665433       256776444567788888999999999999999999


Q ss_pred             HHHhcCCcceec
Q 016486          206 LAVGLGYTPLST  217 (388)
Q Consensus       206 LAk~LG~~fID~  217 (388)
                      ||+.||+.+++-
T Consensus       130 Lskelg~~~~Ew  141 (634)
T KOG1970|consen  130 LSKELGYQLIEW  141 (634)
T ss_pred             HHHhhCceeeee
Confidence            999999988764

>PRK06893 DNA replication initiation factor; Validated

Probab=97.10  E-value=0.0037  Score=59.14  Aligned_cols=33  Identities=3%  Similarity=0.025  Sum_probs=28.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc-----CCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D  218 (388)
                      ...++|.|++|+|||++++++|..+     +..|++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            3568999999999999999999875     66777775

>PHA00729 NTP-binding motif containing protein

Probab=97.08  E-value=0.0005  Score=66.08  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      .+|+|+|.+|+||||+|..||++++.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~   43 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFW   43 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            48999999999999999999999863

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.07  E-value=0.0042  Score=59.12  Aligned_cols=35  Identities=9%  Similarity=0.019  Sum_probs=29.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +.+++|.|++|+|||++++.++..+.     ..|+..+..
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~   84 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR   84 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence            46899999999999999999998765     467777663

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.04  E-value=0.00068  Score=68.39  Aligned_cols=32  Identities=9%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      .+++|+|+|++|+||||+++.||+.||++++-
T Consensus        63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            46889999999999999999999999999873

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF13173 AAA_14: AAA domain

Probab=97.03  E-value=0.00066  Score=58.18  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC----CcceechhHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLET  223 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG----~~fID~D~lIE~  223 (388)
                      +++.++|.|++|+||||+.+.+++.+.    +-+++.|+.-..
T Consensus         1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~   43 (128)
T PF13173_consen    1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR   43 (128)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence            357799999999999999999999876    888888876543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.02  E-value=0.00079  Score=55.35  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=28.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D  218 (388)
                      .+..++|+|++|+|||++++.+++.+   +.+++..+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   54 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN   54 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence            36789999999999999999999998   65555544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.01  E-value=0.00068  Score=72.19  Aligned_cols=61  Identities=23%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             cchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          148 IDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       148 ~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      -..++|++..|+...       ++.|-.-.  +.+...++.++|.||+||||||..+.||+.||+.+++-
T Consensus        16 ~~~~eLavhkkKv~e-------V~~wl~~~--~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew   76 (519)
T PF03215_consen   16 KTLDELAVHKKKVEE-------VRSWLEEM--FSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW   76 (519)
T ss_pred             CCHHHhhccHHHHHH-------HHHHHHHH--hccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence            566778887777543       26676543  23344456789999999999999999999999877763

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.00  E-value=0.005  Score=66.84  Aligned_cols=35  Identities=9%  Similarity=-0.034  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL  221 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lI  221 (388)
                      ..|.|.|++||||||+++.|+..+ +...|..|++.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            568899999999999999999998 45678888764

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.99  E-value=0.00066  Score=65.56  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=29.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      ..+.+|+|+|++|+|||++++.||+.+|.+|+
T Consensus        19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            35789999999999999999999999999888

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.98  E-value=0.0065  Score=56.41  Aligned_cols=150  Identities=14%  Similarity=0.105  Sum_probs=82.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc--ceechhHHHHHh--------cCchhhhhhccCcHHHH----------HH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFA--------KQTIDSWMLAEGSDSVV----------NG  244 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~--fID~D~lIE~~~--------g~sI~eif~~~Ge~~FR----------e~  244 (388)
                      .|+-|+||||+|+||-|+...+...|.-.  +.=.-.+|-+-+        -.+-.++....++-.|.          -+
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            57889999999999999999888888533  222222222111        11223333332332221          01


Q ss_pred             HHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-------cccCHHHHHHHHHHHhHhcccc--
Q 016486          245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------DENSAKEEARRHVKDGKLGYSN--  315 (388)
Q Consensus       245 E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D~~d~~e~l~~l~~eR~~~Y~~--  315 (388)
                      =.++-..|. .+..||+-|.=    ..-|+.++...+-.+|.|.+++++       .+.+..+++..++. |...|..  
T Consensus        84 p~eId~wl~-~G~vvl~NgSR----a~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~-R~a~~~~~~  157 (192)
T COG3709          84 PAEIDLWLA-AGDVVLVNGSR----AVLPQARRRYPQLLVVCITASPEVLAQRLAERGRESREEILARLA-RAARYTAGP  157 (192)
T ss_pred             chhHHHHHh-CCCEEEEeccH----hhhHHHHHhhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHH-hhcccccCC
Confidence            123333443 35577776643    445555655555679999999987       13333555666655 5556653  


Q ss_pred             CcE-EEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          316 ADV-VVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       316 AD~-vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      .|+ +|++++.    ++...+..+..|.+.
T Consensus       158 ~dv~~idNsG~----l~~ag~~ll~~l~~~  183 (192)
T COG3709         158 GDVTTIDNSGE----LEDAGERLLALLHQD  183 (192)
T ss_pred             CCeEEEcCCCc----HHHHHHHHHHHHHhh
Confidence            664 3555553    234555555555533

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0041  Score=67.57  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=40.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC---chhhhh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ---TIDSWM  233 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~---sI~eif  233 (388)
                      .++.|.|.|+||||||+++|.||..-+..|+..  -+++-++.|.   .+.++|
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF  520 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVF  520 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHH
Confidence            467899999999999999999999999999885  6777777775   344444

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.92  E-value=0.00084  Score=69.56  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      +...+|+|+|++|+|||++|+.||+.++.+|+..|.
T Consensus       106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~  141 (412)
T PRK05342        106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA  141 (412)
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence            346789999999999999999999999999986653

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.91  E-value=0.0011  Score=66.50  Aligned_cols=45  Identities=11%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             hhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       171 ~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      ..|+-+...+.+.+ ++.|+|+|.+|+||||+++.|++.+|.+++.
T Consensus       148 ~~w~~i~~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       148 QHWKHIPREVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             HHHHhCCHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            46877776665655 4589999999999999999999999998865

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=96.90  E-value=0.00056  Score=63.24  Aligned_cols=92  Identities=23%  Similarity=0.446  Sum_probs=76.0

Q ss_pred             cCCCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHH
Q 016486           75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLV  154 (388)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v  154 (388)
                      .+...+|+|+-.=.|||+++.++... +.+++|.|.-...++.|.++-+.    .|=-+.||+.|++.|..|.|+|+.++
T Consensus        15 g~~~~~y~W~QtL~EV~i~i~vp~~~-~ksk~v~~~Iq~~hI~V~~kg~~----~ildG~L~~~vk~des~WtiEd~k~i   89 (179)
T KOG2265|consen   15 GADEEKYTWDQTLEEVEIQIPVPPGT-AKSKDVHCSIQSKHIKVGLKGQP----PILDGELSHSVKVDESTWTIEDGKMI   89 (179)
T ss_pred             CccccceeeeeehhheEEEeecCCCC-cccceEEEEeeeeEEEEecCCCC----ceecCccccccccccceEEecCCEEE
Confidence            44556899999999999999999988 99999999999999888776544    45568999999999999999999887


Q ss_pred             HH-hhccCCCCCCchhhhhhHHhhh
Q 016486          155 IN-LKKQDPELKWPDIVESWESLTA  178 (388)
Q Consensus       155 ~~-~~~~~~~~~wp~~~~~W~sl~~  178 (388)
                      +. .++...       ++.|.++--
T Consensus        90 ~i~l~K~~~-------~eWW~~ll~  107 (179)
T KOG2265|consen   90 VILLKKSNK-------MEWWDSLLE  107 (179)
T ss_pred             EEEeeccch-------HHHHHHHHc
Confidence            44 445544       488998874

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.88  E-value=0.00087  Score=64.68  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=25.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+++|.|+||+||||+|+.+|+.+|..|.-+
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~   81 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT   81 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence            4799999999999999999999999887554

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=96.88  E-value=0.0031  Score=64.71  Aligned_cols=150  Identities=13%  Similarity=0.181  Sum_probs=81.4

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhc---CCccee--chhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhc
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS--TKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSS  254 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID--~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~  254 (388)
                      -.-.+|..|+|+|.+|+|||||.-+|-+.|   |+|++.  +|.+.. -..+.+.  | .++.++..|++ .++.+-...
T Consensus        45 ~~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirh-gl~knlg--fs~edreenirri-aevaklfad  120 (627)
T KOG4238|consen   45 RGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRH-GLNKNLG--FSPEDREENIRRI-AEVAKLFAD  120 (627)
T ss_pred             cCCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhh-hhhhccC--CCchhHHHHHHHH-HHHHHHHhc
Confidence            455678999999999999999999998876   677765  555433 2222222  3 24455666654 334433333


Q ss_pred             CCCeEE-EecCCcccccccHHHHHhhcC-----CcEEEEEcCccc-cccCHHHHHHHHHHHhH-----------hcccc-
Q 016486          255 HVRAVV-ATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM-DENSAKEEARRHVKDGK-----------LGYSN-  315 (388)
Q Consensus       255 ~~~~VV-StGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~-D~~d~~e~l~~l~~eR~-----------~~Y~~-  315 (388)
                      .+-+.| |...-+  .-.|...| .++.     -+-||++++.+. +..+    ...+|.+-+           ..|+. 
T Consensus       121 aglvcitsfispf--~~dr~~ar-kihe~~~l~f~ev~v~a~l~vceqrd----~k~lykkaragei~gftgids~ye~p  193 (627)
T KOG4238|consen  121 AGLVCITSFISPF--AKDRENAR-KIHESAGLPFFEVFVDAPLNVCEQRD----VKGLYKKARAGEIKGFTGIDSDYEKP  193 (627)
T ss_pred             CCceeeehhcChh--hhhhhhhh-hhhcccCCceEEEEecCchhhhhhcC----hHHHHhhhhccccccccccccccCCC
Confidence            322222 111111  01122222 2332     358899998876 2222    233443321           23543 


Q ss_pred             --CcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          316 --ADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       316 --AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                        +.++++++..++   .+.++++++.|+..
T Consensus       194 e~~e~vl~t~~~~v---~~cvqqvve~lq~~  221 (627)
T KOG4238|consen  194 ETPERVLKTNLSTV---SDCVQQVVELLQEQ  221 (627)
T ss_pred             CChhHHhhcCCchH---HHHHHHHHHHHHhc
Confidence              446666665544   37777777777653

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.004  Score=62.48  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      ..-|+|+|+.+||||-+|-.||+++|.+.|++|.+
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            45699999999999999999999999999999997

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.83  E-value=0.00087  Score=59.39  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      +|+|+|.+|+||||+++.||+. |++++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            4899999999999999999999 99988

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.82  E-value=0.0065  Score=56.66  Aligned_cols=38  Identities=13%  Similarity=0.119  Sum_probs=32.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLET  223 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~  223 (388)
                      +..++|.|.+|+|||++++.++..+     ...|++..+..+.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~   84 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA   84 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence            4689999999999999999999987     6788888776544

>PHA02244 ATPase-like protein

Probab=96.80  E-value=0.0015  Score=67.08  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      .+.+|+|+|++|||||++++.||..+|++|+....+.
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~  154 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM  154 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence            4678999999999999999999999999999776543

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.79  E-value=0.00097  Score=60.98  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=30.4

Q ss_pred             EEEEecCCCchHHHHHHHHHhc-----CCcceechhHHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLE  222 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE  222 (388)
                      |.|.|.+||||||+++.|++.|     +...|.+|++..
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            7899999999999999999997     357889999875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.00076  Score=68.31  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=27.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+-|.|-||||.|||++.|+||++|..+..|.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~  208 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDR  208 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence            35688999999999999999999998776554

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.77  E-value=0.0011  Score=60.61  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC--Ccceechh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE  219 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~  219 (388)
                      +.|+|+|.+||||||+|..|++.++  +.|+.+..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~   36 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ   36 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence            5799999999999999999999987  55666643

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.72  E-value=0.0038  Score=65.62  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|+|.|++|+|||++++.||..++++|+..+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~  120 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS  120 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence            467999999999999999999999999998764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>CHL00181 cbbX CbbX; Provisional

Probab=96.67  E-value=0.0017  Score=64.03  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C------CcceechhHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G------YTPLSTKELLETFAK  226 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G------~~fID~D~lIE~~~g  226 (388)
                      .+.+|+|.|++|+||||+|+.+|+.+   |      +..++.++++.+..|
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g  108 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG  108 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence            46679999999999999999999976   2      234455666655544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.66  E-value=0.013  Score=58.73  Aligned_cols=36  Identities=19%  Similarity=0.105  Sum_probs=29.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      ++..|.|+|++|+||||+...||..+   |  .-++++|-.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            46789999999999999999999887   2  455777753

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.65  E-value=0.037  Score=61.13  Aligned_cols=36  Identities=22%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK  218 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D  218 (388)
                      ...+.+++|+|++|+|||++++.||+++          ++.++..|
T Consensus       200 ~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~  245 (731)
T TIGR02639       200 RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD  245 (731)
T ss_pred             cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence            3456789999999999999999999998          77777766

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.64  E-value=0.0018  Score=63.51  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---------CcceechhHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETFAK  226 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---------~~fID~D~lIE~~~g  226 (388)
                      .+.+|+|.|++|+||||+|+.+|+.+.         +.+++.++++.+..|
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g  107 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG  107 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence            456899999999999999999988773         334455666654444

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.60  E-value=0.002  Score=66.90  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+.+|+|+|++|+|||++++.||+.++++|+-.|
T Consensus       115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d  148 (413)
T TIGR00382       115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD  148 (413)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence            4578999999999999999999999998887444

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK10646 ADP-binding protein; Provisional

Probab=96.58  E-value=0.0035  Score=56.96  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             hHHhhhhhhhccC-CCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          173 WESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       173 W~sl~~~~~~~l~-g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ...+++.+.+.++ +..|+|.|..|+||||+.|.+++.||.
T Consensus        14 t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         14 TLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             HHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3344444444444 568899999999999999999999996

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0019  Score=70.77  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ...++|.-++|+||||.|||++|+-+|+.||..|+-.
T Consensus       345 ~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         345 TKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             hccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            3666888999999999999999999999999999874

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0054  Score=66.50  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~  227 (388)
                      +.-|.|.|+||||||-+||++|..-|..||..  -+++-++.|.
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE  588 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE  588 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence            46799999999999999999999999999984  5777777665

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.52  E-value=0.015  Score=56.39  Aligned_cols=30  Identities=17%  Similarity=0.104  Sum_probs=26.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      ..+++|.|++|+|||++++.+|+.++..+.
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~   59 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLK   59 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            356999999999999999999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.51  E-value=0.0025  Score=55.88  Aligned_cols=29  Identities=31%  Similarity=0.365  Sum_probs=24.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .+..|+|.|..||||||+.|.+++.||..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            46789999999999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.51  E-value=0.0046  Score=63.86  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=30.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|+|.|++|+|||++++.+|..++.+|+...
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~  211 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV  211 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            4678999999999999999999999999988763

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.51  E-value=0.0024  Score=67.67  Aligned_cols=34  Identities=18%  Similarity=0.108  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|++|||||.+++.+|..+|++|+..|
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            4578999999999999999999999999998865

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.49  E-value=0.0022  Score=61.64  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+++|.|++|+||||+|+.+|+.+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.47  E-value=0.025  Score=57.51  Aligned_cols=106  Identities=13%  Similarity=0.057  Sum_probs=67.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG  264 (388)
                      ...+++.|+.|||||+|...|++. |+..+|+-.+.+- .|-....+- .+..-..|...-...|..+.....++|=+-+
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh-rGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es  218 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH-RGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDES  218 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh-ccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence            345789999999999999999876 8889999887653 232333222 2233345654444444444442345553221


Q ss_pred             Cccc-ccccHHHHHhhcCCcEEEEEcCccc
Q 016486          265 GQQG-AAARADKWQHLYAGFTVWLSQTEAM  293 (388)
Q Consensus       265 G~~g-av~r~enr~~L~~g~VVyLd~~~e~  293 (388)
                      -.=| +.+-+.-|+.|+++.+|+|++|.+.
T Consensus       219 ~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~  248 (345)
T PRK11784        219 RRIGRVHLPEALYEAMQQAPIVVVEAPLEE  248 (345)
T ss_pred             ccccCccCCHHHHHHHhhCCEEEEECCHHH
Confidence            1001 2444556789999999999999864

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.44  E-value=0.0027  Score=65.01  Aligned_cols=33  Identities=15%  Similarity=0.087  Sum_probs=29.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .++.|+|.|++|+|||++++.+|..++.+|+..
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v  196 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  196 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence            356799999999999999999999999888765

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.43  E-value=0.011  Score=52.70  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=27.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      .|+++|++|+||||+++.||..+   |  .-++|+|..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            47899999999999999998876   4  456888843

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.41  E-value=0.0072  Score=51.96  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhc---CC--cceechh
Q 016486          189 IFLVGDSTEVNEKVALELAVGL---GY--TPLSTKE  219 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~  219 (388)
                      |.|.|..|+||||++..||+.+   |.  -.+|+|-
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            8899999999999999999877   54  4478875

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0028  Score=64.19  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      .+.+.||.|+||.|||||-+|+-||+.|+.||-=.|.
T Consensus        94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            4667899999999999999999999999999986664

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.39  E-value=0.002  Score=63.71  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=30.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC-----CcceechhHHH
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE  222 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE  222 (388)
                      |.|+|.+||||||+++.|++.|+     ..+|++|+++.
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            78999999999999999998774     56899999875

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.37  E-value=0.024  Score=55.20  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=59.3

Q ss_pred             CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHh
Q 016486           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL  157 (388)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~  157 (388)
                      .+.|+|.-.+..+.+|++.-+.           .++.++.||+..+....  ..-.+|          . +.++++. .+
T Consensus        18 ~g~~~~~~~~~~~~~Rv~~~p~-----------~~G~~~~iR~~~~~~~~--~~l~~l----------g-~~~~~~~-~l   72 (264)
T cd01129          18 DGRIRLKLKGREIDLRVSTLPT-----------IYGESVVLRILDKKNQI--LDLEKL----------G-LKPENLE-IF   72 (264)
T ss_pred             CceEEEEECCcEEEEEEEEeec-----------CCCCEEEEEEeCCccCC--CCHHHc----------C-CCHHHHH-HH
Confidence            4567776677778888876442           24788999998766541  111222          1 1222211 11


Q ss_pred             hccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHHH
Q 016486          158 KKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETF  224 (388)
Q Consensus       158 ~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~~  224 (388)
                      +.                +.     ...+..|+|+|.+||||||+.+.+...+.   ..++-.++-+|-.
T Consensus        73 ~~----------------~~-----~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~  121 (264)
T cd01129          73 RK----------------LL-----EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ  121 (264)
T ss_pred             HH----------------HH-----hcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence            11                11     11234699999999999999998866653   4456665555533

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.0026  Score=69.77  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=32.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      ...+|+.|+|+||||.|||+|||-+|+.||..|+-
T Consensus       434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR  468 (906)
T KOG2004|consen  434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR  468 (906)
T ss_pred             ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence            55678999999999999999999999999999875

>PRK04195 replication factor C large subunit; Provisional

Probab=96.33  E-value=0.0055  Score=64.25  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ...++|.|++|+||||+++.||+.+|+.+++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln   71 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN   71 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence            578999999999999999999999999998763

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.32  E-value=0.0069  Score=66.73  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=34.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK  226 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g  226 (388)
                      .++.|.|.|++|||||++++.+|..++.+|+..+  +++.+..|
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG  529 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG  529 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence            3567999999999999999999999999998754  44444443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.32  E-value=0.0035  Score=53.74  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=28.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE  222 (388)
                      .+..+.|+|++||||||+.+++.  -|--.+++|++..
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~   49 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE   49 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence            46789999999999999999988  3445567776643

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.31  E-value=0.0034  Score=57.36  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=26.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC----cceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY----TPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~----~fID~D  218 (388)
                      .++.|+|++|+|||.+++.||+.|..    +++-.|
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d   39 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID   39 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence            57999999999999999999999995    554443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.30  E-value=0.0041  Score=62.68  Aligned_cols=33  Identities=15%  Similarity=0.076  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|+|.|++|+|||++++.+|..++.+|+...
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~  188 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV  188 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence            567999999999999999999999998887653

Many proteins may score above the trusted cutoff because an internal

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.28  E-value=0.0083  Score=62.23  Aligned_cols=35  Identities=14%  Similarity=-0.020  Sum_probs=31.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      -.+.+|-|+||+||||+|+++|+..++.|.-....
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv   82 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV   82 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence            35789999999999999999999999999877554

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.28  E-value=0.0086  Score=62.69  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=30.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+..|+|.|++|+|||++++.+|..++.+|+..+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~  249 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVV  249 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence            4578999999999999999999999999888653

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.28  E-value=0.0084  Score=58.80  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----C---CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G---~~fID~D~l  220 (388)
                      ++..|.|+|+.|+||||++..||..+    |   ..+|++|.+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~  235 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY  235 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence            35689999999999999999998866    3   458899875

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.27  E-value=0.0034  Score=57.86  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI  221 (388)
                      .+.+|+|+|++|+|||++++.+++.+.     +.+++++.+.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            357899999999999999999998763     5577776654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=96.26  E-value=0.039  Score=55.41  Aligned_cols=105  Identities=16%  Similarity=0.092  Sum_probs=64.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhh--hccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM--LAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif--~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG  264 (388)
                      ..+++.|+.|+|||.|.+.|++. |+..||+...-+ ..|.....+-  .+.....|+..-...|..+.....+||-+-+
T Consensus       128 ~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~-hrGs~fG~~~~~~qpsq~~fe~~L~~~l~~~~~~~~i~~e~es  205 (311)
T TIGR03167       128 PLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLAN-HRGSSFGALGLGPQPSQKRFENALAEALRRLDPGRPIFVEDES  205 (311)
T ss_pred             ceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHH-hcCcccCCCCCCCCCchHHHHHHHHHHHHhCCCCceEEEEeCc
Confidence            45679999999999999999887 889999988643 3332111111  1112356643323333333222345664433


Q ss_pred             Cccccccc-HHHHHhhcCCcEEEEEcCccc
Q 016486          265 GQQGAAAR-ADKWQHLYAGFTVWLSQTEAM  293 (388)
Q Consensus       265 G~~gav~r-~enr~~L~~g~VVyLd~~~e~  293 (388)
                      ..-|.+.- +.-|+.|+.+.+|+|+.|.+.
T Consensus       206 ~~ig~~~~p~~l~~~m~~~~~i~i~~~~e~  235 (311)
T TIGR03167       206 RRIGRVALPDALFEAMRAAPLVELEASLEE  235 (311)
T ss_pred             hhhccccCCHHHHHHHhhCCEEEEECCHHH
Confidence            32122333 446889999999999999864

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>CHL00176 ftsH cell division protein; Validated

Probab=96.25  E-value=0.008  Score=65.65  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|+|.|++|+|||++++.+|..++.+|+..+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is  248 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS  248 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence            467999999999999999999999999998754

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=96.24  E-value=0.0029  Score=53.23  Aligned_cols=84  Identities=19%  Similarity=0.366  Sum_probs=67.9

Q ss_pred             ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccC-CCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRS-GSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (388)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~  158 (388)
                      .|.|+....+|.+++.+++.     +|+.|+...+++.|.+.-. |...-.++. .||..|+|.++.|.+.+..+.+.++
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~~-----~~~~V~~~~~~l~v~~~~~~~~~~y~~~~-~L~~~I~pe~s~~~v~~~kveI~L~   75 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPDA-----KDPKIKLEPTSLSFKAKGGGGGKKYEFDL-EFYKEIDPEESKYKVTGRQIEFVLR   75 (108)
T ss_pred             ceeeeECCCEEEEEEEeCCC-----CCcEEEEECCEEEEEEEcCCCCeeEEEEe-EhhhhccccccEEEecCCeEEEEEE
Confidence            58889999999999999874     8999999999999988542 233234444 8999999999999998888889999


Q ss_pred             ccCCCCCCchh
Q 016486          159 KQDPELKWPDI  169 (388)
Q Consensus       159 ~~~~~~~wp~~  169 (388)
                      +.+.+..||.+
T Consensus        76 K~~~~~~W~~L   86 (108)
T cd06465          76 KKEAGEYWPRL   86 (108)
T ss_pred             ECCCCCCCccc
Confidence            98734467766

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.0085  Score=61.25  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=33.4

Q ss_pred             hhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      +.....++||.+||+.|.|||-+||.||+..|.||+-.
T Consensus        44 lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220          44 LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             HhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            34555689999999999999999999999999999854

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.23  E-value=0.1  Score=48.33  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=43.3

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC-CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHh-cCCCeEEEecCC
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLS-SHVRAVVATLGG  265 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG-~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~-~~~~~VVStGGG  265 (388)
                      |+=|+..||||||+|..|+..+| |..+-.|++-    |+.         ...|-   ..+++.|. ....+||+.=.-
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~----~k~---------~~~f~---~~~l~~L~~~~~~vViaDRNN   64 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT----GKR---------KPKFI---KAVLELLAKDTHPVVIADRNN   64 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC----CCC---------HHHHH---HHHHHHHhhCCCCEEEEeCCC
Confidence            45588999999999999999999 9999999962    221         12332   24565663 334688886654

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.23  E-value=0.0053  Score=54.16  Aligned_cols=43  Identities=21%  Similarity=0.089  Sum_probs=25.6

Q ss_pred             hhhhHHhhhhh--hhccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          170 VESWESLTAGS--MQLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       170 ~~~W~sl~~~~--~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      .+-|+.+...+  .....+.+|+|+|.+|+|||++.+.+.+.+.-
T Consensus         6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~   50 (185)
T PF13191_consen    6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE   50 (185)
T ss_dssp             HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34455555433  33445688999999999999999988877643

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.23  E-value=0.034  Score=60.77  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|+|+|++|+|||++++.+|..++.+|+..+
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is  217 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS  217 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            356999999999999999999999999988754

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.21  E-value=0.0071  Score=64.49  Aligned_cols=29  Identities=17%  Similarity=0.142  Sum_probs=26.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .++.|+|.|++|+|||++++.+|..|+.+
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            35679999999999999999999999765

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.19  E-value=0.0031  Score=56.07  Aligned_cols=30  Identities=23%  Similarity=0.201  Sum_probs=22.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      +|.|.|.+|.||||+++.||+.+|..|...
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence            478999999999999999999999988754

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.18  E-value=0.0043  Score=61.64  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ..+.+.+++|.|++|+|||++++.+|+.+|++|+..
T Consensus        39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i   74 (329)
T COG0714          39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRI   74 (329)
T ss_pred             HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence            455789999999999999999999999999888764

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.015  Score=64.52  Aligned_cols=42  Identities=24%  Similarity=0.278  Sum_probs=35.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~  227 (388)
                      ++-+.|+|+||+|||-+||++|-.-|.||+..  -+++|-..|.
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~  387 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGV  387 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhccc
Confidence            46799999999999999999999999999984  4556655554

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.12  E-value=0.031  Score=55.47  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETF  224 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~  224 (388)
                      .+.+|+++|.+||||||+.+.|...+     +...+-..+..|-.
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~  175 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ  175 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence            35789999999999999999999886     34555556655533

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.12  E-value=0.0047  Score=63.22  Aligned_cols=28  Identities=18%  Similarity=0.229  Sum_probs=25.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      +++.+.|+|++|+||||+++.|++.|+.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4577899999999999999999999975

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=96.12  E-value=0.016  Score=54.74  Aligned_cols=151  Identities=16%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCccee---c--------------hhHHHHHhcC---chhhhhhccCcHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS---T--------------KELLETFAKQ---TIDSWMLAEGSDSVVN  243 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID---~--------------D~lIE~~~g~---sI~eif~~~Ge~~FRe  243 (388)
                      .+|..|+|-|..+|||||.+..|.+.+. +-.+   .              |.++.+...+   .|.-+|....++... 
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~-   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS-   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHH-hccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH-
Confidence            3688999999999999999999988773 2211   1              2222222221   233445554444443 


Q ss_pred             HHHHHHHHHhcCCCeEEE---ecCCcccccccH-----------HHHHhhcCCcEEEEEcCcccc------ccCH---HH
Q 016486          244 GECDVLESLSSHVRAVVA---TLGGQQGAAARA-----------DKWQHLYAGFTVWLSQTEAMD------ENSA---KE  300 (388)
Q Consensus       244 ~E~~vL~~L~~~~~~VVS---tGGG~~gav~r~-----------enr~~L~~g~VVyLd~~~e~D------~~d~---~e  300 (388)
                         .+.+++.+...+||-   -+|    +++..           ....+++++.|+||+++++.-      +.+.   .+
T Consensus        81 ---~i~e~l~kg~~~ivDRY~~SG----vAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~  153 (208)
T KOG3327|consen   81 ---LIKEKLAKGTTLIVDRYSFSG----VAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVA  153 (208)
T ss_pred             ---HHHHHHhcCCeEEEecceecc----hhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHH
Confidence               344455543334442   121    11111           112345568999999999871      1111   11


Q ss_pred             HHHHHHHHhHhcccc--Cc-EEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          301 EARRHVKDGKLGYSN--AD-VVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       301 ~l~~l~~eR~~~Y~~--AD-~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      ..++...-++..-+.  .. .+|+.+  ..  .++|.+.|...++..+..
T Consensus       154 fqekv~~~~q~l~r~e~~~~~~vDAs--~s--ve~V~~~V~~i~e~~~~~  199 (208)
T KOG3327|consen  154 FQEKVLVFFQKLLRKEDLNWHVVDAS--KS--VEKVHQQVRSLVENVLSE  199 (208)
T ss_pred             HHHHHHHHHHHHHhccCCCeEEEecC--cc--HHHHHHHHHHHHHHhccC
Confidence            122222222333332  22 344444  22  568988888888876654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.10  E-value=0.027  Score=58.95  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~l  220 (388)
                      ++..|+|+|++|+||||++..||..+    |  ..++++|.+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~  263 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY  263 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence            35679999999999999999999754    2  567888885

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.09  E-value=0.013  Score=54.66  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +.|+|+|+.|+||||....||.++.     ..++.+|.+
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            5799999999999999998998874     567778866

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.06  E-value=0.0059  Score=62.76  Aligned_cols=33  Identities=15%  Similarity=-0.012  Sum_probs=29.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ..+++|.|++|+||||+++.+|+.++..|+..+
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~   68 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALS   68 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            458999999999999999999999998887654

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=96.06  E-value=0.0029  Score=49.99  Aligned_cols=83  Identities=20%  Similarity=0.400  Sum_probs=67.4

Q ss_pred             eecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccC
Q 016486           82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD  161 (388)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~  161 (388)
                      +|.+...+|-+.+.+++.   ..+|+.|+-..+++.|++...+...-.++. .||..|.|.+.-|.+.+..+.+.+++..
T Consensus         1 dW~Qt~~~v~i~v~~~~~---~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~vei~L~K~~   76 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNV---DKEDVKVEFNEQSLSVSIILPGGSEYQLEL-DLFGPIDPEQSKVSVLPTKVEITLKKAE   76 (84)
T ss_pred             CccccCCEEEEEEEECCC---CHHHCEEEEecCEEEEEEECCCCCeEEEec-ccccccCchhcEEEEeCeEEEEEEEcCC
Confidence            356677889999988864   378899999999999987765444556666 6999999999999999999989998887


Q ss_pred             CCCCCchh
Q 016486          162 PELKWPDI  169 (388)
Q Consensus       162 ~~~~wp~~  169 (388)
                      . ..||.+
T Consensus        77 ~-~~W~~L   83 (84)
T cd06466          77 P-GSWPSL   83 (84)
T ss_pred             C-CCCccC
Confidence            6 478865

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.04  E-value=0.025  Score=55.39  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=29.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      +++.|.|+|++|+||||++..||..+   |  ..++|+|-+
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~  111 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF  111 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            35689999999999999999999877   4  456888853

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.04  E-value=0.1  Score=58.54  Aligned_cols=36  Identities=14%  Similarity=0.115  Sum_probs=29.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK  218 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D  218 (388)
                      ...+.+++|+|++|+|||++++.||+.+          ++.++..|
T Consensus       197 r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~  242 (821)
T CHL00095        197 RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD  242 (821)
T ss_pred             ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence            3456789999999999999999999987          35666655

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=96.01  E-value=0.0088  Score=57.66  Aligned_cols=37  Identities=11%  Similarity=0.007  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcc-eechhHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETF  224 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f-ID~D~lIE~~  224 (388)
                      +.|.|+|++||||||+++.+.+ .|.++ +.+-+.|.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~   38 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI   38 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence            3589999999999999997755 47777 8876666544

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.01  E-value=0.0082  Score=54.47  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=28.3

Q ss_pred             hhcc-CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          181 MQLL-KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       181 ~~~l-~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      .+.+ .+..|+|.|.-||||||+.|.+++.||.
T Consensus        19 ~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          19 AEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             HhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            3444 6889999999999999999999999994

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.00  E-value=0.02  Score=54.21  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=23.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..++|+|++|+||||+++.++..+.
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999999886

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.00  E-value=0.0057  Score=56.64  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .++|+++|+||+||||+.+.+|+.|.
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            47899999999999999999998874

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.96  E-value=0.014  Score=60.29  Aligned_cols=42  Identities=14%  Similarity=0.060  Sum_probs=33.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAKQ  227 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g~  227 (388)
                      +.-+.|-|++|||||.+++++|+.+|..||-++  ++..+.+|.
T Consensus       148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE  191 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE  191 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence            445778899999999999999999999987654  455455554

>PRK06526 transposase; Provisional

Probab=95.96  E-value=0.015  Score=56.41  Aligned_cols=26  Identities=12%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+|+|+|++|+|||+++..|+..+
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHH
Confidence            46799999999999999999998765

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=95.96  E-value=0.0068  Score=60.17  Aligned_cols=31  Identities=16%  Similarity=0.069  Sum_probs=27.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      ..+++|.|++|+||||+++.+|+.++..+.-
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~   81 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRI   81 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence            4579999999999999999999999987643

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.95  E-value=0.023  Score=59.20  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=29.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc-------CCcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~l  220 (388)
                      +..|.|+|+.|+||||++..||..+       ...+|++|.+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~  262 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY  262 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence            5689999999999999888887654       2678899985

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.94  E-value=0.021  Score=56.58  Aligned_cols=117  Identities=11%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC-------cceechhH------HHHHh---cCchhhhhhccCcHHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKEL------LETFA---KQTIDSWMLAEGSDSVVNGECDV  248 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~-------~fID~D~l------IE~~~---g~sI~eif~~~Ge~~FRe~E~~v  248 (388)
                      .+..|.|.|.+|+||||+++.|+..|..       ..|-+|-+      +++.-   .+..++   .++-..|.+.-.++
T Consensus        81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe---SyD~~~ll~fl~~v  157 (283)
T COG1072          81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE---SYDVAALLRFLSDV  157 (283)
T ss_pred             CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc---cccHHHHHHHHHHH
Confidence            3567999999999999999999998852       23334433      33221   111121   12233443332222


Q ss_pred             HHH----------------------HhcCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccccccCHHHHHHH
Q 016486          249 LES----------------------LSSHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAMDENSAKEEARR  304 (388)
Q Consensus       249 L~~----------------------L~~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~D~~d~~e~l~~  304 (388)
                      -..                      +....++||.-|-.   +....+.|..+..  +++||+|++.+        .+++
T Consensus       158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~n---vLq~~~p~~~~sdffDfSIyvDa~~~--------~le~  226 (283)
T COG1072         158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNN---VLQDGEPWLFLSDFFDFSIYVDADEE--------LLEE  226 (283)
T ss_pred             hcCCCccccccccccccccCCCceeecCCCCEEEEechh---hhcCCCccccccccceEEEEecCCHH--------HHHH
Confidence            210                      01123467776755   3445556777766  68999999874        4667


Q ss_pred             HHHHhHhcccc
Q 016486          305 HVKDGKLGYSN  315 (388)
Q Consensus       305 l~~eR~~~Y~~  315 (388)
                      .|.+|.-.+..
T Consensus       227 wyi~Rfl~~g~  237 (283)
T COG1072         227 RYIERFLKFGL  237 (283)
T ss_pred             HHHHHHHhccc
Confidence            77777654443

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.93  E-value=0.064  Score=55.77  Aligned_cols=36  Identities=6%  Similarity=0.148  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-----C--CcceechhHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLE  222 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-----G--~~fID~D~lIE  222 (388)
                      ..++|.|++|+|||++++.++..+     +  ..|+..+++..
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~  191 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN  191 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence            569999999999999999999987     3  34677766544

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.93  E-value=0.052  Score=56.43  Aligned_cols=60  Identities=12%  Similarity=0.061  Sum_probs=43.4

Q ss_pred             CCCCCCchhhhhhHHhhhhhh---------hccCCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          161 DPELKWPDIVESWESLTAGSM---------QLLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       161 ~~~~~wp~~~~~W~sl~~~~~---------~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      .....|+...+.|..+...+.         ..-++..|.|+|+.|+||||+...||..+   |  ..++++|.+
T Consensus       172 ~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty  245 (407)
T PRK12726        172 FKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF  245 (407)
T ss_pred             ccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence            344566776666776654332         12246789999999999999999999766   2  568999976

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.91  E-value=0.0063  Score=55.54  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=21.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|+|+|.+|+||||+.+.+.+.|
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.90  E-value=0.007  Score=50.70  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++..++|.|.+|+|||++.+.+++.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            35779999999999999999999987

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=95.88  E-value=0.044  Score=60.67  Aligned_cols=26  Identities=19%  Similarity=0.120  Sum_probs=24.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .|..|.|+|.+||||||++|+|...+
T Consensus       498 ~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         498 PGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999999876

>PF05729 NACHT: NACHT domain

Probab=95.87  E-value=0.0074  Score=51.91  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +.++|.|.+|+||||+.+.++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            3589999999999999999998874

>PRK09183 transposase/IS protein; Provisional

Probab=95.86  E-value=0.0097  Score=57.73  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CC--cceechhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~lIE  222 (388)
                      ++.+++|+|++|+|||+++..|+..+   |+  .|+++.+++.
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~  143 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL  143 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence            46789999999999999999997654   43  4555555554

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.021  Score=59.73  Aligned_cols=36  Identities=17%  Similarity=0.098  Sum_probs=31.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      ....|.|.|++|+|||.+|+.+|..++.+|+..+.-
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~  310 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS  310 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence            345799999999999999999999999999987654

>TIGR00763 lon ATP-dependent protease La

Probab=95.79  E-value=0.0083  Score=66.67  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=29.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ++..++|+|++|+|||++++.||+.++.+|+-.
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence            566899999999999999999999999888754

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.78  E-value=0.0081  Score=51.05  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=24.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|.+||||||+.+.|+..+
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEccCCCccccceeeecccc
Confidence            467899999999999999999999876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.78  E-value=0.011  Score=54.18  Aligned_cols=41  Identities=17%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechhHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA  225 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~lIE~~~  225 (388)
                      ++.+++|.|.+|+|||.++..++..+     ...|++..+++++..
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            46899999999999999999998755     367888899888765

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.0079  Score=58.67  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=28.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~  219 (388)
                      --+|..|.|+|++||||||+-+++|-..    |--.+++..
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~   66 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP   66 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcc
Confidence            3468899999999999999999999765    334455543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.74  E-value=0.0081  Score=58.59  Aligned_cols=40  Identities=28%  Similarity=0.288  Sum_probs=31.0

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceechhH
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKEL  220 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~l  220 (388)
                      -.--+|.++-|+|.+||||||+++.||-..    |--.+|+..+
T Consensus        28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~   71 (252)
T COG1124          28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL   71 (252)
T ss_pred             EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence            345578999999999999999999999765    3445555443

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.0092  Score=62.60  Aligned_cols=37  Identities=19%  Similarity=0.122  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      .|.+.||+|+|+.|||||-+++-||+.|+.||.=+|-
T Consensus       223 ~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDc  259 (564)
T KOG0745|consen  223 ELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDC  259 (564)
T ss_pred             eeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecc
Confidence            4567899999999999999999999999999986653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.70  E-value=0.0081  Score=60.99  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=27.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----CCcceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~  219 (388)
                      .|..++|+|++||||||+-|++|-..    |--+|++.+
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~   66 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRD   66 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence            57889999999999999999999655    344555433

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.69  E-value=0.0075  Score=50.49  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=21.1

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      |+|.|.+|+|||++++.||+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998775

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=95.68  E-value=0.062  Score=52.15  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      ++...+|+|.+|+||.|++..+++.++...+.+.+++++.
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~   53 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDE   53 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHH
Confidence            5788999999999999999999999999999998887764

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=95.65  E-value=0.026  Score=59.12  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=30.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      ++..|+|+|+.|+||||++..||..|   |  .-++++|.+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            46789999999999999999999887   3  456788865

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.027  Score=62.54  Aligned_cols=42  Identities=26%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~  227 (388)
                      ..-|.|-|+||+|||-+||++|..+.+.|++.  -+++-.+.|.
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGq  748 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQ  748 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcc
Confidence            45699999999999999999999999999994  5777666665

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.58  E-value=0.011  Score=54.75  Aligned_cols=28  Identities=25%  Similarity=0.219  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999865

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=95.56  E-value=0.013  Score=60.33  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC--Ccceec
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~  217 (388)
                      ..+.|+.|.|.|+||+|||.+|-.+|+.||  .||+.+
T Consensus        46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i   83 (398)
T PF06068_consen   46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI   83 (398)
T ss_dssp             T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred             ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence            345689999999999999999999999998  888875

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.56  E-value=0.011  Score=53.64  Aligned_cols=29  Identities=21%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+-.+
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999999765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK05642 DNA replication initiation factor; Validated

Probab=95.53  E-value=0.069  Score=50.85  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh-----cCCcceechhHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG-----LGYTPLSTKELLE  222 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~-----LG~~fID~D~lIE  222 (388)
                      ..++|.|.+|+|||.+++.++..     ....|++.++++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence            57899999999999999998754     3467888888764

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.52  E-value=0.012  Score=64.97  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=30.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|+|.|++|+|||++++.+|..++.+|+..+
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~  244 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN  244 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence            3578999999999999999999999998887643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.51  E-value=0.012  Score=54.23  Aligned_cols=28  Identities=14%  Similarity=0.042  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468889999999999999999999765

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00959 ffh signal recognition particle protein

Probab=95.50  E-value=0.065  Score=56.08  Aligned_cols=35  Identities=23%  Similarity=0.155  Sum_probs=28.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~l  220 (388)
                      +..|+++|++|+||||++..||..|    |  ..++|+|.+
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~  139 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY  139 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            5689999999999999988888774    2  557899954

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.50  E-value=0.012  Score=55.29  Aligned_cols=28  Identities=14%  Similarity=0.159  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.50  E-value=0.011  Score=55.48  Aligned_cols=29  Identities=17%  Similarity=0.080  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..|.|+|++||||||+-|++|...
T Consensus        25 ~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          25 SVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            34468899999999999999999999865

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.50  E-value=0.012  Score=54.37  Aligned_cols=28  Identities=21%  Similarity=0.081  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3368899999999999999999999776

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.49  E-value=0.012  Score=54.10  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.48  E-value=0.012  Score=54.10  Aligned_cols=28  Identities=21%  Similarity=0.219  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3367899999999999999999999765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.46  E-value=0.061  Score=57.15  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=25.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      +..++|.|++|+||||+|+.||+.|+..
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            3458999999999999999999999874

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.46  E-value=0.012  Score=54.09  Aligned_cols=28  Identities=29%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+..+
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999999765

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.45  E-value=0.29  Score=54.79  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=24.1

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.+++|+|++|+|||++++.||+..
T Consensus       205 ~~~~n~LLvGppGvGKT~lae~la~~i  231 (758)
T PRK11034        205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999875

>CHL00206 ycf2 Ycf2; Provisional

Probab=95.44  E-value=0.029  Score=67.52  Aligned_cols=38  Identities=13%  Similarity=0.161  Sum_probs=33.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE  222 (388)
                      .++.|.|+|++|+|||-+||+||...++||+..  .++++
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            457899999999999999999999999999874  55554

>PRK13695 putative NTPase; Provisional

Probab=95.44  E-value=0.013  Score=52.57  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCcc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP  214 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~f  214 (388)
                      ++|+|+|.+|+||||+.+.++..+   |+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            579999999999999999988776   5553

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.44  E-value=0.014  Score=53.37  Aligned_cols=27  Identities=11%  Similarity=0.110  Sum_probs=24.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+.+|+|+|++||||||+.+.|...+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            478999999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK08727 hypothetical protein; Validated

Probab=95.42  E-value=0.16  Score=48.29  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=27.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CC--cceechhHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELL  221 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~lI  221 (388)
                      ..|+|.|.+|+|||.+++.++..+   |+  .|+..++..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~   81 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA   81 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence            459999999999999999986554   44  567766644

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.41  E-value=0.046  Score=57.29  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      +..|.|+|+.|+||||++..||..|   |  .-++++|.+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~  139 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF  139 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence            4679999999999999999999877   4  466888875

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.41  E-value=0.013  Score=54.01  Aligned_cols=28  Identities=18%  Similarity=0.005  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999999765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.41  E-value=0.1  Score=53.30  Aligned_cols=36  Identities=8%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-----C--CcceechhHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLE  222 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-----G--~~fID~D~lIE  222 (388)
                      ..++|.|++|+|||++++.++..+     +  ..|++++++..
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~  179 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN  179 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence            468999999999999999999876     3  34677766544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR00368 Mg chelatase-related protein

Probab=95.41  E-value=0.0057  Score=64.96  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE  222 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE  222 (388)
                      ..+.+++|+|++|+||||+++.++..+  +..+.+..++
T Consensus       209 ~~g~~vlliG~pGsGKTtlar~l~~ll--p~~~~~~~le  245 (499)
T TIGR00368       209 AGGHNLLLFGPPGSGKTMLASRLQGIL--PPLTNEEAIE  245 (499)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHhccc--CCCCCcEEEe
Confidence            356899999999999999999999876  3344444444

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.40  E-value=0.013  Score=54.84  Aligned_cols=28  Identities=18%  Similarity=0.107  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3468899999999999999999999765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.12  Score=52.39  Aligned_cols=135  Identities=15%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcCc--------------------hhhhh-----hccCc-
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT--------------------IDSWM-----LAEGS-  238 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~s--------------------I~eif-----~~~Ge-  238 (388)
                      +-|.|.|++|.|||-+|+++|..-+-.|++.  -+++.+-.|.+                    |++|=     ..++| 
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs  246 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES  246 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch
Confidence            3499999999999999999999999888764  55665555432                    11110     11222 


Q ss_pred             HHHHHHHHHHHHHHhc---CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-----------ccc--CHHHHH
Q 016486          239 DSVVNGECDVLESLSS---HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-----------DEN--SAKEEA  302 (388)
Q Consensus       239 ~~FRe~E~~vL~~L~~---~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-----------D~~--d~~e~l  302 (388)
                      ++-|++-++.|-++..   ....|+..|+----+++....|+..  .--||+-.|..-           +.+  -..+.+
T Consensus       247 easRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRF--ekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~  324 (439)
T KOG0739|consen  247 EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRF--EKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDF  324 (439)
T ss_pred             HHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHh--hcceeccCCcHHHhhhhheeccCCCccccchhhH
Confidence            4677888888877752   2345666664310022333333222  346777666543           111  112233


Q ss_pred             HHHHHHhHhccccCcEEEEcCC
Q 016486          303 RRHVKDGKLGYSNADVVVKLQG  324 (388)
Q Consensus       303 ~~l~~eR~~~Y~~AD~vV~~d~  324 (388)
                      +++ .+.-.-|..+|+.|.+.+
T Consensus       325 ~eL-~~kTeGySGsDisivVrD  345 (439)
T KOG0739|consen  325 KEL-ARKTEGYSGSDISIVVRD  345 (439)
T ss_pred             HHH-HhhcCCCCcCceEEEehh
Confidence            333 233467899998877664

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.39  E-value=0.014  Score=53.69  Aligned_cols=28  Identities=14%  Similarity=0.181  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.39  E-value=0.012  Score=54.99  Aligned_cols=28  Identities=14%  Similarity=-0.001  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3468899999999999999999999765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=95.38  E-value=0.081  Score=57.74  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc-----C--CcceechhHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLETF  224 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L-----G--~~fID~D~lIE~~  224 (388)
                      .+||.|.+|+|||.+++.++..+     |  ..|+.+++++.+.
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            49999999999999999999876     2  3688887776544

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.37  E-value=0.014  Score=54.24  Aligned_cols=28  Identities=21%  Similarity=0.054  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          27 VEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3367899999999999999999999765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=95.35  E-value=0.14  Score=54.21  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=28.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc----CCcceec
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST  217 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~  217 (388)
                      -+|..|.|+|.+||||||+.+.|+..+    |--++|+
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g  393 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG  393 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence            368899999999999999999999887    4445554

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.34  E-value=0.013  Score=56.52  Aligned_cols=37  Identities=16%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceech
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTK  218 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D  218 (388)
                      .--+|..++|||++||||||+-|.|...-    |--.||++
T Consensus        24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~   64 (240)
T COG1126          24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE   64 (240)
T ss_pred             eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence            34468899999999999999999886532    45566663

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.34  E-value=0.013  Score=54.05  Aligned_cols=28  Identities=14%  Similarity=0.114  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3468899999999999999999998765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.34  E-value=0.013  Score=54.14  Aligned_cols=28  Identities=14%  Similarity=0.150  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468899999999999999999998765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.33  E-value=0.015  Score=54.09  Aligned_cols=28  Identities=21%  Similarity=0.054  Sum_probs=25.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3368899999999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.33  E-value=0.014  Score=54.77  Aligned_cols=28  Identities=11%  Similarity=0.094  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3468899999999999999999999765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.33  E-value=0.014  Score=54.47  Aligned_cols=28  Identities=14%  Similarity=0.027  Sum_probs=25.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999876

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14974 cell division protein FtsY; Provisional

Probab=95.33  E-value=0.077  Score=53.84  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=28.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      ++..|.|+|++|+||||+...||..|   |  ..++++|.+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            35689999999999999888888765   3  335777743

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.32  E-value=0.015  Score=53.48  Aligned_cols=28  Identities=29%  Similarity=0.232  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=95.31  E-value=0.014  Score=61.50  Aligned_cols=31  Identities=29%  Similarity=0.117  Sum_probs=27.1

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ....+.+|+|.|++|+|||++|+.||..++.
T Consensus       190 ~L~~~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        190 RLTIKKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             HHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3446889999999999999999999999863

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=95.31  E-value=0.03  Score=55.24  Aligned_cols=49  Identities=27%  Similarity=0.386  Sum_probs=36.5

Q ss_pred             hhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcc-eechhHHHHH
Q 016486          172 SWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETF  224 (388)
Q Consensus       172 ~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~f-ID~D~lIE~~  224 (388)
                      .|-...    +..++..|+|=|.+|.||||+|..||.+||..- +.+|.+.|-+
T Consensus        79 lwR~ir----~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvl  128 (299)
T COG2074          79 LWRRIR----KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVL  128 (299)
T ss_pred             HHHHHh----ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHH
Confidence            455544    344566788889999999999999999999764 5667665433

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.30  E-value=0.015  Score=53.97  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.++|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468889999999999999999999765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.30  E-value=0.015  Score=52.18  Aligned_cols=29  Identities=17%  Similarity=0.050  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999998765

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.29  E-value=0.022  Score=55.56  Aligned_cols=30  Identities=17%  Similarity=0.078  Sum_probs=24.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .++|.|++|+||||+++.+++.++..++..
T Consensus        45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i   74 (316)
T PHA02544         45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFV   74 (316)
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence            455589999999999999999998766543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.29  E-value=0.015  Score=53.77  Aligned_cols=28  Identities=21%  Similarity=0.100  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.28  E-value=0.03  Score=56.28  Aligned_cols=26  Identities=8%  Similarity=0.132  Sum_probs=23.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+++|.|++|+|||++.+.+++.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999999876

>TIGR00602 rad24 checkpoint protein rad24

Probab=95.27  E-value=0.011  Score=64.62  Aligned_cols=33  Identities=15%  Similarity=0.085  Sum_probs=28.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      ..+..++|.|++|+||||+.+.||+.+++.+++
T Consensus       108 ~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E  140 (637)
T TIGR00602       108 APKRILLITGPSGCGKSTTIKILSKELGIQVQE  140 (637)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence            345679999999999999999999999977654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.26  E-value=0.016  Score=52.98  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=95.26  E-value=0.017  Score=64.48  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=30.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .++..|+|+|++|+||||+++.+|+.++.+|+..
T Consensus       347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i  380 (784)
T PRK10787        347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM  380 (784)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            4577899999999999999999999999998643

>PRK08181 transposase; Validated

Probab=95.26  E-value=0.023  Score=55.80  Aligned_cols=40  Identities=23%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF  224 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~lIE~~  224 (388)
                      ++.+++|+|++|+|||.++..++..+   |  ..|+.+.+++++.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            56789999999999999999998654   4  5577777777655

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.26  E-value=0.015  Score=54.46  Aligned_cols=28  Identities=14%  Similarity=0.122  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999763

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.26  E-value=0.058  Score=58.11  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-------CCcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~l  220 (388)
                      ++..|.|+|+.|+||||+...||..+       ...++++|.+
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty  391 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ  391 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            47899999999999999999998754       2567888874

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.25  E-value=0.016  Score=53.33  Aligned_cols=28  Identities=18%  Similarity=0.069  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=95.24  E-value=0.016  Score=53.60  Aligned_cols=28  Identities=21%  Similarity=0.178  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467889999999999999999999765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.23  E-value=0.02  Score=51.86  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      ..++-|.|+|++|+||||++..|.++ |+.++.=|.
T Consensus        12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~   46 (149)
T cd01918          12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDR   46 (149)
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence            35788999999999999999988886 788885553

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.053  Score=55.81  Aligned_cols=62  Identities=19%  Similarity=0.233  Sum_probs=46.0

Q ss_pred             hccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcC
Q 016486          158 KKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ  227 (388)
Q Consensus       158 ~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~  227 (388)
                      ...+.-++=|.+.+   .+.     --.++-|.|-|+||+|||-+||++|.+.+..||-  +-+++.++.|.
T Consensus       165 E~VELPL~~PElF~---~~G-----I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE  228 (406)
T COG1222         165 EVVELPLKNPELFE---ELG-----IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE  228 (406)
T ss_pred             HHhcccccCHHHHH---HcC-----CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence            34444466666633   222     2246789999999999999999999999999987  46777777765

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.21  E-value=0.016  Score=64.47  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|+|++|+|||++|+.||+.|+.+|+..|
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id  520 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD  520 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence            6899999999999999999999998886543

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.20  E-value=0.023  Score=44.08  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=26.2

Q ss_pred             EEEEecCCCchHHHHHHHHHhc---CCcceech
Q 016486          189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK  218 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D  218 (388)
                      |++.|..|+||||++..||..|   |++.+-.|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            7889999999999999999998   67776666

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.19  E-value=0.017  Score=54.44  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.19  E-value=0.016  Score=57.18  Aligned_cols=37  Identities=16%  Similarity=0.084  Sum_probs=30.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC----Ccceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG----~~fID~D~  219 (388)
                      .-+|..+-|+|-+||||||+||.|...+.    --++++.+
T Consensus        36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~   76 (268)
T COG4608          36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD   76 (268)
T ss_pred             EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence            34688999999999999999999988773    45566555

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.19  E-value=0.017  Score=53.92  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|.+||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999999765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.18  E-value=0.016  Score=53.98  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.++|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.17  E-value=0.018  Score=52.71  Aligned_cols=28  Identities=11%  Similarity=0.094  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999876

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.17  E-value=0.017  Score=53.53  Aligned_cols=28  Identities=29%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          28 IKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=95.17  E-value=0.018  Score=53.71  Aligned_cols=29  Identities=24%  Similarity=0.203  Sum_probs=25.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+-.+
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            33468899999999999999999999775

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.16  E-value=0.018  Score=51.95  Aligned_cols=28  Identities=18%  Similarity=0.074  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=95.16  E-value=0.016  Score=55.79  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      .++|+|+.|+|||.+|-.||+++|.+.|..|.+
T Consensus         3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri   35 (233)
T PF01745_consen    3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRI   35 (233)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred             EEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence            478999999999999999999999999999987

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.14  E-value=0.018  Score=54.14  Aligned_cols=28  Identities=14%  Similarity=0.069  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3468899999999999999999999664

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.14  E-value=0.19  Score=47.50  Aligned_cols=106  Identities=17%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-------CCcceechhHHHHHh----cCchh---------------hhhhccCcHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETFA----KQTID---------------SWMLAEGSDS  240 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~lIE~~~----g~sI~---------------eif~~~Ge~~  240 (388)
                      ..++|.|.+|+|||.+.+.++..+       ...|++.+++.....    ...+.               ++-.-.|...
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~  114 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR  114 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence            469999999999999999997764       245788777654332    11121               1111112222


Q ss_pred             HHHHHHHHHHHHhcCCC-eEEEecCCcccc-cccHHHHHhhcCCcEEEEEcCcc
Q 016486          241 VVNGECDVLESLSSHVR-AVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEA  292 (388)
Q Consensus       241 FRe~E~~vL~~L~~~~~-~VVStGGG~~ga-v~r~enr~~L~~g~VVyLd~~~e  292 (388)
                      ..+.=..++..+...+. +|+++....... ...+..+..|..|+++-|..|.+
T Consensus       115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~  168 (219)
T PF00308_consen  115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD  168 (219)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred             HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence            22222344555554444 555554331000 12344455666799999977753

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=95.14  E-value=0.14  Score=57.86  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=25.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .....+++|+|++|+||||+++.||+++.
T Consensus       205 r~~~~n~lLvG~pGvGKTal~~~La~~i~  233 (852)
T TIGR03345       205 RRRQNNPILTGEAGVGKTAVVEGLALRIA  233 (852)
T ss_pred             cCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence            33457899999999999999999999873

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03112 CobW_like The function of this protein family is unkown

Probab=95.14  E-value=0.027  Score=50.36  Aligned_cols=22  Identities=9%  Similarity=-0.032  Sum_probs=19.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .++|+|++||||||+.+.+.+.
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3789999999999999987765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.14  E-value=0.018  Score=53.83  Aligned_cols=27  Identities=7%  Similarity=-0.212  Sum_probs=24.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+..+
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            357889999999999999999999654

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.12  E-value=0.018  Score=53.15  Aligned_cols=29  Identities=21%  Similarity=0.061  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|.+||||||+.+.|+..+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34468899999999999999999999765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.12  E-value=0.018  Score=53.97  Aligned_cols=28  Identities=18%  Similarity=0.074  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3367889999999999999999999765

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.11  E-value=0.15  Score=53.10  Aligned_cols=113  Identities=16%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             hhHHhhhhhhhc---cCCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH----HHHhcCchhhhh----
Q 016486          172 SWESLTAGSMQL---LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL----ETFAKQTIDSWM----  233 (388)
Q Consensus       172 ~W~sl~~~~~~~---l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI----E~~~g~sI~eif----  233 (388)
                      .|..+-....+.   .+++.|.|+|+.|+||||--..||.++.       ..+|.+|.+.    |+.-  ..++++    
T Consensus       186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk--~Ya~im~vp~  263 (407)
T COG1419         186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK--TYADIMGVPL  263 (407)
T ss_pred             HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH--HHHHHhCCce
Confidence            555555444444   4688999999999999986666766664       7899999983    3321  122221    


Q ss_pred             -hccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc----C--CcEEEEEcCccc
Q 016486          234 -LAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAM  293 (388)
Q Consensus       234 -~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~----~--g~VVyLd~~~e~  293 (388)
                       .......|.    +++..+... ++|+..-.|.  -.........|.    .  .+-+||-.+.-.
T Consensus       264 ~vv~~~~el~----~ai~~l~~~-d~ILVDTaGr--s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~  323 (407)
T COG1419         264 EVVYSPKELA----EAIEALRDC-DVILVDTAGR--SQYDKEKIEELKELIDVSHSIEVYLVLSATT  323 (407)
T ss_pred             EEecCHHHHH----HHHHHhhcC-CEEEEeCCCC--CccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence             111222332    234455444 4454433332  245555555444    2  468888888653

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=95.09  E-value=0.019  Score=52.76  Aligned_cols=27  Identities=11%  Similarity=-0.021  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            368899999999999999999999765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=95.09  E-value=0.017  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ++|.|||..|||||||.+.|-..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            57999999999999999988663

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=95.07  E-value=0.018  Score=53.07  Aligned_cols=25  Identities=20%  Similarity=0.064  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +| .+.|+|++||||||+.+.|+-.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            46 89999999999999999999765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.07  E-value=0.019  Score=54.06  Aligned_cols=28  Identities=18%  Similarity=0.081  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=95.07  E-value=0.019  Score=55.11  Aligned_cols=28  Identities=18%  Similarity=0.086  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.06  E-value=0.019  Score=56.40  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc----CCcceechhHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKELL  221 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D~lI  221 (388)
                      -.+|..+.|+|+.||||||+-|.|+..|    |--++|+.++.
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~   67 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA   67 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence            3457899999999999999999999977    45677776553

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.06  E-value=0.031  Score=59.39  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----C---CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G---~~fID~D~l  220 (388)
                      ++..|.|+|+.|+||||....||..+    |   .-+++.|.+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~  297 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY  297 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            46789999999999999999999766    2   456788875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.04  E-value=0.02  Score=52.76  Aligned_cols=26  Identities=27%  Similarity=0.211  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            57889999999999999999998764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.03  E-value=0.018  Score=58.80  Aligned_cols=27  Identities=22%  Similarity=0.043  Sum_probs=23.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..+.|.|++||||||+-|++|---
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999999543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=95.02  E-value=0.02  Score=54.08  Aligned_cols=27  Identities=11%  Similarity=0.085  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367889999999999999999999765

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.01  E-value=0.02  Score=52.37  Aligned_cols=27  Identities=26%  Similarity=0.169  Sum_probs=23.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|..+.|+|++||||||+.+.|+-.
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          30 VKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            346788999999999999999999953

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.00  E-value=0.064  Score=55.45  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=30.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---------CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---------~~fID~D~l  220 (388)
                      ++..|+|+|+.|+||||.+..||..+.         ..++++|.+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~  217 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY  217 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence            357899999999999999999998763         457888875

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.00  E-value=0.02  Score=54.08  Aligned_cols=28  Identities=14%  Similarity=0.081  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         26 FEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3367899999999999999999999765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=94.99  E-value=0.021  Score=54.18  Aligned_cols=28  Identities=14%  Similarity=-0.057  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467899999999999999999999654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=94.97  E-value=0.021  Score=53.72  Aligned_cols=28  Identities=11%  Similarity=0.108  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=94.96  E-value=0.022  Score=51.29  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34468899999999999999999999765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.95  E-value=0.021  Score=54.01  Aligned_cols=28  Identities=14%  Similarity=0.055  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3467899999999999999999999765

>PRK10867 signal recognition particle protein; Provisional

Probab=94.95  E-value=0.079  Score=55.53  Aligned_cols=35  Identities=23%  Similarity=0.108  Sum_probs=28.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~l  220 (388)
                      +..|+++|+.|+||||++..||..|    |  .-++++|.+
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~  140 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY  140 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            5689999999999999888888755    3  357899954

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=94.95  E-value=0.022  Score=53.02  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.||-.+
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            34467889999999999999999999776

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=94.95  E-value=0.021  Score=54.58  Aligned_cols=28  Identities=11%  Similarity=0.035  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999999765

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.94  E-value=0.022  Score=54.94  Aligned_cols=34  Identities=18%  Similarity=0.045  Sum_probs=27.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc----CCcceec
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST  217 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~  217 (388)
                      -+|..+.|+|++||||||+-..++-..    |..++++
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g   66 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING   66 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence            357889999999999999999888655    3445554

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.94  E-value=0.024  Score=46.68  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|+++|.+|+||||+-+.|....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999888754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04155 Arl3 Arl3 subfamily

Probab=94.94  E-value=0.028  Score=49.10  Aligned_cols=28  Identities=14%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+...|+|+|++|+||||+.+.|...
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            3445678999999999999999988754

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=94.94  E-value=0.023  Score=52.52  Aligned_cols=27  Identities=11%  Similarity=-0.085  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +...|.|+|.+||||||+.+.|...|.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            345689999999999999999998874

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=94.92  E-value=0.023  Score=53.24  Aligned_cols=28  Identities=18%  Similarity=0.086  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999999754

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.92  E-value=0.044  Score=57.26  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +..|.|+|+.|+||||++..||..|.     ..++++|..
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~  280 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS  280 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence            46899999999999999999997773     557888865

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=94.91  E-value=0.022  Score=53.57  Aligned_cols=28  Identities=11%  Similarity=0.027  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999875

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=94.91  E-value=0.023  Score=51.98  Aligned_cols=28  Identities=21%  Similarity=0.111  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999865

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.91  E-value=0.02  Score=52.93  Aligned_cols=29  Identities=14%  Similarity=0.157  Sum_probs=25.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            34678999999999999999999998753

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.91  E-value=0.024  Score=54.09  Aligned_cols=27  Identities=11%  Similarity=0.063  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|.+||||||+.+.|+-.+
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            368899999999999999999999754

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.91  E-value=0.031  Score=56.60  Aligned_cols=26  Identities=23%  Similarity=0.187  Sum_probs=23.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..++|.|++|+||||+++.+|+.+..
T Consensus        39 h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         39 HAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            45789999999999999999999974

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=94.90  E-value=0.016  Score=57.91  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC---cceechhHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY---TPLSTKELLETFAK  226 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~---~fID~D~lIE~~~g  226 (388)
                      +.+.|++-|.-|+|||++||.||++||+   |-+++|.+....+|
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg  114 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG  114 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence            3578999999999999999999999995   55578877655554

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.90  E-value=0.022  Score=53.83  Aligned_cols=28  Identities=11%  Similarity=0.046  Sum_probs=24.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.++|+..+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999999644

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=94.89  E-value=0.022  Score=54.02  Aligned_cols=28  Identities=18%  Similarity=0.154  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.89  E-value=0.024  Score=50.82  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468899999999999999999998765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=94.88  E-value=0.023  Score=53.23  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|.+||||||+.+.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999999765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10908 cell division protein FtsE; Provisional

Probab=94.88  E-value=0.023  Score=52.75  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.88  E-value=0.16  Score=53.13  Aligned_cols=38  Identities=8%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-------CCcceechhHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETF  224 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-------G~~fID~D~lIE~~  224 (388)
                      ..++|.|++|+|||++++.++..+       ...|++.++++.+.
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~  175 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL  175 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            469999999999999999999875       34577777765443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.87  E-value=0.024  Score=52.01  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999999998765

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.87  E-value=0.021  Score=54.06  Aligned_cols=27  Identities=15%  Similarity=-0.023  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            468899999999999999999999765

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=94.87  E-value=0.022  Score=53.14  Aligned_cols=30  Identities=10%  Similarity=0.155  Sum_probs=25.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ...+|..+.|+|++||||||+.+.|+..+.
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          29 HVESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            344678999999999999999999997653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=94.87  E-value=0.023  Score=53.30  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=24.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      -+|..+.|+|++||||||+.+.|+-.+.
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3688999999999999999999997653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.86  E-value=0.024  Score=51.38  Aligned_cols=28  Identities=14%  Similarity=-0.024  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3367889999999999999999999876

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.86  E-value=0.025  Score=50.58  Aligned_cols=29  Identities=14%  Similarity=0.116  Sum_probs=24.8

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=94.84  E-value=0.024  Score=53.43  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468899999999999999999999765

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=94.83  E-value=0.024  Score=53.78  Aligned_cols=28  Identities=29%  Similarity=0.245  Sum_probs=25.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        26 LYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999876

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=94.83  E-value=0.026  Score=50.69  Aligned_cols=28  Identities=21%  Similarity=0.200  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3468899999999999999999999765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=94.82  E-value=0.024  Score=53.60  Aligned_cols=28  Identities=18%  Similarity=0.037  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999999999664

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.82  E-value=0.023  Score=62.72  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ..+...|+|++|.||||+|..+|+.-||.+++.
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            346788999999999999999999999999996

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=94.81  E-value=0.025  Score=53.24  Aligned_cols=27  Identities=19%  Similarity=0.059  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|.+||||||+.+.|+-.+
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999999999765

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.81  E-value=0.025  Score=52.52  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|.+||||||+.+.|+..+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999999765

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.81  E-value=0.48  Score=54.04  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      ..++|.|++|+||||++++||+.|++.
T Consensus        39 HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         39 HAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            346899999999999999999999874

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.80  E-value=0.024  Score=53.69  Aligned_cols=28  Identities=14%  Similarity=0.050  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999999999764

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.80  E-value=0.033  Score=52.99  Aligned_cols=26  Identities=15%  Similarity=0.059  Sum_probs=23.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -....|.|.|+.|+||||+|+.+++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            34578999999999999999999987

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=94.80  E-value=0.025  Score=52.03  Aligned_cols=29  Identities=17%  Similarity=0.048  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+..+
T Consensus        20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          20 TFAQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999999765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=94.79  E-value=0.025  Score=53.98  Aligned_cols=28  Identities=14%  Similarity=-0.008  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.||-.+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            3368899999999999999999999754

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=94.78  E-value=0.025  Score=53.04  Aligned_cols=28  Identities=18%  Similarity=0.165  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999998765

>PRK12377 putative replication protein; Provisional

Probab=94.77  E-value=0.11  Score=50.56  Aligned_cols=39  Identities=13%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc---CC--cceechhHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLETF  224 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L---G~--~fID~D~lIE~~  224 (388)
                      ..+++|.|.+|+|||.++..+|..+   |+  .|+...+++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            3689999999999999999999988   33  466666666543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=94.77  E-value=0.026  Score=52.69  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999999776

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=94.76  E-value=0.015  Score=60.20  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             EEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCc
Q 016486          119 RVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEV  198 (388)
Q Consensus       119 ~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSG  198 (388)
                      +.+.+-..+-+|+-.+|-++.+|.+    .||      ++.|+.-+---++      |..-+ ..-+-.+++|-|++|+|
T Consensus       112 ~~l~~~e~R~~~qh~PLaermRPkt----L~d------yvGQ~hlv~q~gl------lrs~i-eq~~ipSmIlWGppG~G  174 (554)
T KOG2028|consen  112 RALAAEEIRQMLQHKPLAERMRPKT----LDD------YVGQSHLVGQDGL------LRSLI-EQNRIPSMILWGPPGTG  174 (554)
T ss_pred             chhhhHHHHHHhccCChhhhcCcch----HHH------hcchhhhcCcchH------HHHHH-HcCCCCceEEecCCCCc
Confidence            3445555667788888999999987    333      2222210000011      11111 11123579999999999


Q ss_pred             hHHHHHHHHHhcC---Ccceec
Q 016486          199 NEKVALELAVGLG---YTPLST  217 (388)
Q Consensus       199 KSTVGr~LAk~LG---~~fID~  217 (388)
                      |||+|+.|+..-.   |.||++
T Consensus       175 KTtlArlia~tsk~~Syrfvel  196 (554)
T KOG2028|consen  175 KTTLARLIASTSKKHSYRFVEL  196 (554)
T ss_pred             hHHHHHHHHhhcCCCceEEEEE
Confidence            9999999998764   668876

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.76  E-value=0.024  Score=48.12  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=25.1

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +.|+|.+|+||||+++.++..+.     ..|++.+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~   38 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE   38 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence            68999999999999999988873     445555443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.76  E-value=0.026  Score=52.10  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|.+||||||+.+.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999999999875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=94.75  E-value=0.026  Score=53.81  Aligned_cols=27  Identities=15%  Similarity=0.059  Sum_probs=24.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|.+||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         29 NAGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999999999876

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=94.74  E-value=0.026  Score=54.18  Aligned_cols=26  Identities=19%  Similarity=0.046  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999999875

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.74  E-value=0.026  Score=53.53  Aligned_cols=28  Identities=11%  Similarity=0.025  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3468899999999999999999999875

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=94.74  E-value=0.027  Score=52.09  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            33468899999999999999999999765

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.74  E-value=0.028  Score=50.86  Aligned_cols=28  Identities=18%  Similarity=0.138  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999998765

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.74  E-value=0.028  Score=50.37  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=25.6

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            34468899999999999999999999876

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.74  E-value=0.026  Score=54.20  Aligned_cols=28  Identities=14%  Similarity=-0.018  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         44 IEKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3468899999999999999999999753

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.74  E-value=0.027  Score=52.75  Aligned_cols=28  Identities=25%  Similarity=0.177  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          26 IPPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            3468899999999999999999999775

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK04296 thymidine kinase; Provisional

Probab=94.72  E-value=0.025  Score=52.13  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      |..++++|+||+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999988887

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.72  E-value=0.035  Score=59.26  Aligned_cols=28  Identities=14%  Similarity=0.073  Sum_probs=25.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      ...++|.|++|+||||+|+++|+.|++.
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            3579999999999999999999999864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=94.72  E-value=0.026  Score=54.45  Aligned_cols=27  Identities=11%  Similarity=0.076  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999765

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=94.72  E-value=0.029  Score=54.79  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=22.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +++|.|++|+||||+++.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999999999999884

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=94.71  E-value=0.025  Score=58.51  Aligned_cols=37  Identities=16%  Similarity=0.052  Sum_probs=31.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC-----Ccceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~  219 (388)
                      .-....|+|+|+-.|||||+...||.++.     +.+||.|-
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv  111 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV  111 (398)
T ss_pred             ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence            33457899999999999999999999985     67788874

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.70  E-value=0.028  Score=53.35  Aligned_cols=28  Identities=11%  Similarity=-0.059  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|.+||||||+.+.|+-.+
T Consensus        28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         28 IYKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468899999999999999999999764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=94.70  E-value=0.028  Score=52.29  Aligned_cols=29  Identities=28%  Similarity=0.147  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            33468899999999999999999999775

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.69  E-value=0.029  Score=51.63  Aligned_cols=26  Identities=12%  Similarity=0.006  Sum_probs=22.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .-+|..+.|+|++||||||+-+.+..
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            34678999999999999999998853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=94.69  E-value=0.025  Score=54.36  Aligned_cols=28  Identities=14%  Similarity=0.087  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3467889999999999999999999765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.69  E-value=0.027  Score=53.27  Aligned_cols=27  Identities=11%  Similarity=0.060  Sum_probs=23.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .-+|..+.|+|++||||||+.+.|+..
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         28 FYPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            346889999999999999999999864

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=94.69  E-value=0.027  Score=54.36  Aligned_cols=28  Identities=21%  Similarity=0.045  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999765

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.69  E-value=0.027  Score=53.32  Aligned_cols=28  Identities=14%  Similarity=-0.050  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         28 FNQNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999998753

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.68  E-value=0.029  Score=51.50  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.++-.+
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            34468899999999999999999998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=94.68  E-value=0.028  Score=52.67  Aligned_cols=28  Identities=14%  Similarity=0.097  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3468899999999999999999999766

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=94.67  E-value=0.025  Score=56.57  Aligned_cols=29  Identities=24%  Similarity=0.156  Sum_probs=25.6

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|.+||||||+++.|+..+
T Consensus        29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         29 TLTEGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence            34468899999999999999999999876

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=94.66  E-value=0.033  Score=61.84  Aligned_cols=35  Identities=17%  Similarity=-0.007  Sum_probs=30.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      ..+++|.|++|+||||+++.+|+.++..|+..+..
T Consensus        52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~   86 (725)
T PRK13341         52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV   86 (725)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence            35799999999999999999999999888776654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=94.65  E-value=0.029  Score=52.13  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|.+||||||+.+.|+..+
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33468899999999999999999999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.65  E-value=0.029  Score=51.66  Aligned_cols=29  Identities=17%  Similarity=0.035  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+..+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999999875

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=94.65  E-value=0.028  Score=53.59  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=25.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999999999876

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.65  E-value=0.023  Score=59.63  Aligned_cols=28  Identities=21%  Similarity=0.232  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..|.|+|++||||||+.+.|+..+
T Consensus       358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       358 LPPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999999998776

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.65  E-value=0.029  Score=53.07  Aligned_cols=28  Identities=14%  Similarity=-0.060  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         26 IPARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468899999999999999999999754

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.64  E-value=0.037  Score=58.43  Aligned_cols=26  Identities=23%  Similarity=0.195  Sum_probs=23.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..++|.|++|+||||+|+.+|+.++.
T Consensus        37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         37 HAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45899999999999999999999875

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.64  E-value=0.029  Score=53.31  Aligned_cols=28  Identities=21%  Similarity=0.096  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+..+
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         30 ILKNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999999765

>PRK10865 protein disaggregation chaperone; Provisional

Probab=94.63  E-value=0.03  Score=63.08  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=25.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+.+++|+|++|+|||++++.||+.+
T Consensus       196 r~~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        196 RRTKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             cCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence            4456789999999999999999999998

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.63  E-value=0.029  Score=53.08  Aligned_cols=28  Identities=14%  Similarity=-0.092  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|.+||||||+.+.|+-.+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         27 FEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3467889999999999999999999754

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.62  E-value=0.028  Score=54.74  Aligned_cols=28  Identities=7%  Similarity=0.014  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         34 FKKNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999776

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.62  E-value=0.098  Score=57.96  Aligned_cols=46  Identities=24%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec--hhHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ  227 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~--D~lIE~~~g~  227 (388)
                      +......|.|-|+||||||-++..+|...++.||..  -+++.+..|.
T Consensus       697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa  744 (952)
T KOG0735|consen  697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA  744 (952)
T ss_pred             CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence            334467899999999999999999999999999994  6778877776

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=94.61  E-value=0.03  Score=51.88  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          24 IPTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999999999765

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.60  E-value=0.027  Score=54.25  Aligned_cols=27  Identities=19%  Similarity=0.032  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            367899999999999999999999765

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=94.59  E-value=0.029  Score=52.60  Aligned_cols=28  Identities=21%  Similarity=0.151  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          45 VPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=94.59  E-value=0.031  Score=51.72  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=25.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            33468899999999999999999999764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.59  E-value=0.028  Score=52.05  Aligned_cols=24  Identities=4%  Similarity=0.072  Sum_probs=21.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .|+|+|++||||||+.+.|+..+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            488999999999999998888774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=94.59  E-value=0.03  Score=51.76  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=25.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+-.+
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468999999999999999999999765

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=94.57  E-value=0.047  Score=52.30  Aligned_cols=38  Identities=11%  Similarity=-0.047  Sum_probs=28.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +..++|.|.+|+||||+++.|+.  ...+++.|.-.....
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~   49 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLI   49 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhcc
Confidence            46699999999999999999973  356677766443333

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=94.57  E-value=0.032  Score=51.32  Aligned_cols=29  Identities=24%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|.+||||||+.+.|+-.+
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44468899999999999999999998764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.56  E-value=0.03  Score=54.07  Aligned_cols=28  Identities=21%  Similarity=0.125  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         36 IPRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468889999999999999999999754

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.55  E-value=0.03  Score=53.13  Aligned_cols=28  Identities=14%  Similarity=-0.027  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         29 IPKNRVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            3467889999999999999999999543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=94.55  E-value=0.028  Score=52.94  Aligned_cols=28  Identities=14%  Similarity=0.109  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         24 VRPGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3468899999999999999999999873

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=94.55  E-value=0.031  Score=52.77  Aligned_cols=27  Identities=19%  Similarity=0.085  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|.+||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            367899999999999999999999765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.54  E-value=0.026  Score=61.29  Aligned_cols=27  Identities=19%  Similarity=0.209  Sum_probs=25.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +++.++|+||+|+||||+++.||+.|.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            567899999999999999999999986

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=94.54  E-value=0.028  Score=53.13  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=23.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|..+.|+|.+||||||+.+.|+-.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         30 INKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            346789999999999999999999974

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=94.54  E-value=0.032  Score=53.76  Aligned_cols=28  Identities=18%  Similarity=0.017  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         43 FEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3368899999999999999999999865

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.53  E-value=0.045  Score=54.30  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +.+++|.|++|+|||++++.+++.+
T Consensus        40 ~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        40 PSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999865

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.066  Score=57.71  Aligned_cols=63  Identities=13%  Similarity=0.191  Sum_probs=43.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceec-hhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST-KELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~-D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      ++-|.|+|+||.|||-+||++|-.-|.||+-+ ...++++        |--.|..+.|++    .....+.-+|||
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm--------~VGvGArRVRdL----F~aAk~~APcII  400 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM--------FVGVGARRVRDL----FAAAKARAPCII  400 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh--------hhcccHHHHHHH----HHHHHhcCCeEE
Confidence            36799999999999999999999999999874 3334333        333366666643    323333345665

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=94.52  E-value=0.031  Score=61.81  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=28.8

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCccee--chhHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLE  222 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE  222 (388)
                      +++|+|++|+|||++|+.||+.++.+++-  +.++.+
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~  522 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME  522 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence            57899999999999999999999976654  445443

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=94.52  E-value=0.032  Score=52.12  Aligned_cols=28  Identities=18%  Similarity=0.125  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+-.+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          24 IPAGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3468899999999999999999999765

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=94.51  E-value=0.033  Score=51.07  Aligned_cols=31  Identities=26%  Similarity=0.251  Sum_probs=26.6

Q ss_pred             hhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +...++++.++|+|.+|+||||+...|....
T Consensus        29 l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   29 LKELLKGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             HHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             HHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467778999999999999999999887765

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=94.51  E-value=0.031  Score=53.99  Aligned_cols=28  Identities=18%  Similarity=0.056  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         30 VPGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999765

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.51  E-value=0.032  Score=52.82  Aligned_cols=29  Identities=14%  Similarity=-0.041  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|.+||||||+.+.||-.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         24 QIEQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44468899999999999999999999754

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.50  E-value=0.032  Score=53.31  Aligned_cols=29  Identities=10%  Similarity=0.036  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|.+||||||+.+.|+-.+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         29 DIYRNKVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            33468899999999999999999999764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=94.50  E-value=0.032  Score=52.77  Aligned_cols=28  Identities=14%  Similarity=-0.016  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         26 IEENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3368889999999999999999999643

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.49  E-value=0.032  Score=52.84  Aligned_cols=27  Identities=7%  Similarity=-0.017  Sum_probs=23.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .-+|..+.|+|++||||||+.+.|+-.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         26 IEEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            346889999999999999999999864

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=94.49  E-value=0.032  Score=52.44  Aligned_cols=28  Identities=7%  Similarity=0.016  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467889999999999999999999765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PLN03025 replication factor C subunit; Provisional

Probab=94.49  E-value=0.033  Score=55.13  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+++|.|++|+||||+++.+|+.+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999997

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.49  E-value=0.032  Score=53.84  Aligned_cols=29  Identities=10%  Similarity=0.093  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+-.+
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33468899999999999999999999876

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.48  E-value=0.031  Score=54.03  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999765

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=94.47  E-value=0.033  Score=53.12  Aligned_cols=28  Identities=25%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+-.+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         26 LQRGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999999765

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.47  E-value=0.032  Score=53.81  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         32 INEGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3368899999999999999999999875

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.45  E-value=0.033  Score=53.60  Aligned_cols=28  Identities=18%  Similarity=0.081  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999999765

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.45  E-value=0.036  Score=56.85  Aligned_cols=27  Identities=11%  Similarity=0.022  Sum_probs=24.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      ..++|.|++|+||||+|+.+|+.|.+.
T Consensus        39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         39 HGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            458899999999999999999999873

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=94.44  E-value=0.039  Score=51.82  Aligned_cols=29  Identities=10%  Similarity=0.064  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+.+....|+|+.||||||+.++|+-.|+
T Consensus        20 ~~~~~~~~i~GpNGsGKStll~ai~~~l~   48 (243)
T cd03272          20 PFSPKHNVVVGRNGSGKSNFFAAIRFVLS   48 (243)
T ss_pred             cCCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            34577889999999999999999985543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=94.44  E-value=0.034  Score=53.40  Aligned_cols=28  Identities=14%  Similarity=0.105  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999999764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=94.44  E-value=0.033  Score=53.76  Aligned_cols=29  Identities=24%  Similarity=0.138  Sum_probs=25.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+-.+
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         34 SLKSGETVALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33468899999999999999999999654

>PLN02796 D-glycerate 3-kinase

Probab=94.44  E-value=0.035  Score=56.69  Aligned_cols=35  Identities=11%  Similarity=0.061  Sum_probs=28.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI  221 (388)
                      ..|.|+|.+||||||+++.|+..+.     ...|..|++.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4589999999999999999999985     3446666664

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=94.43  E-value=0.034  Score=48.85  Aligned_cols=28  Identities=25%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|.+||||||+.+.|+..+
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3467889999999999999999998765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=94.43  E-value=0.16  Score=49.26  Aligned_cols=70  Identities=16%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhccCcHHHH--HHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESLSSH  255 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~~Ge~~FR--e~E~~vL~~L~~~  255 (388)
                      .-++.+++|.|.+|+|||.++.+++..+-     ..|+.+-+++.+...             .|.  ..|.++++.+...
T Consensus       102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~-------------~~~~~~~~~~l~~~l~~~  168 (254)
T COG1484         102 FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA-------------AFDEGRLEEKLLRELKKV  168 (254)
T ss_pred             hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH-------------HHhcCchHHHHHHHhhcC
Confidence            33788999999999999999999988873     345566666554331             122  2455566666665


Q ss_pred             CCeEEEecCC
Q 016486          256 VRAVVATLGG  265 (388)
Q Consensus       256 ~~~VVStGGG  265 (388)
                      +=.||---|-
T Consensus       169 dlLIiDDlG~  178 (254)
T COG1484         169 DLLIIDDIGY  178 (254)
T ss_pred             CEEEEecccC
Confidence            5567766654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.43  E-value=0.03  Score=59.55  Aligned_cols=26  Identities=12%  Similarity=0.126  Sum_probs=23.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..++|.|++|+||||+++.+|+.+.+
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            45799999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
3nwj_A	250	Crystal Structure Of Shikimate Kinase From Arabidop		3e-05

>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis Thaliana (Atsk2) Length = 250

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
           L G S++LVG        V   +A  LGYT      L+E   K T  + +     +SV  
Sbjct: 46  LNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFR 105
Query: 244 -GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
             E + L+ LS     VV + GG  GA  R   W++++ G ++WL
Sbjct: 106 EKETEALKKLSLMYHQVVVSTGG--GAVIRPINWKYMHKGISIWL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	2e-09
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	4e-08
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	1e-07
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	2e-07
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	1e-06
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 55/382 (14%), Positives = 120/382 (31%), Gaps = 92/382 (24%)

Query: 43  FISSSLHKSTNVVPIKTHDRRRF-TCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEI 101
           F+ S +          +   R +    + L +     ++Y  S     ++LR  L  LE+
Sbjct: 93  FLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--LEL 147

Query: 102 QSSKDIFVDADG----TCLTVRVNRSGSF----------ITLIETNQLFDKIKPTETIWY 147
           + +K++ +D       T + + V  S             + L   N     ++  + + Y
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 148 -IDEDQLVINLKKQDPELKWPDI----------------------VESWESLTA--GSMQ 182
            ID +    +    + +L+   I                      V++ ++  A   S +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
           +L  T    V D   ++      +++      L+  E+     K               +
Sbjct: 268 ILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLK--------------YL 311

Query: 243 NGECDVL--ESLSSH--VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMD---E 295
           +     L  E L+++    +++A     +   A  D W+H+          T  ++    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHV----NCD-KLTTIIESSLN 364

Query: 296 NSAKEEARRHVKDGKLGYSNADVVVKLQG----WDADHAKSVAQASLSAL--KQLIQSDK 349
                E R+      L        +        W  D  KS     ++ L    L++   
Sbjct: 365 VLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 350 K-----LPGKKSLYIRLGCRGD 366
           K     +P    +Y+ L  + +
Sbjct: 422 KESTISIPS---IYLELKVKLE 440

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A    Y +S    ++E+R+ +    +   K + V    + + V +        L+E  +L
Sbjct: 17  AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKL 74

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
             KI    ++W +     +++NL K   E  W  I+E 
Sbjct: 75  THKINTESSLWSLEPGKCVLVNLSKVG-EYWWNAILEG 111

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A+   Y ++   +E++L +          KD+ VD     L V +    + I      +L
Sbjct: 14  ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAII----DGEL 69

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 70  YNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSS 107

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 12/91 (13%), Positives = 32/91 (35%)

Query: 79  SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDK 138
           S Y +      +++ + L  +    ++++ V        + V         +  N L   
Sbjct: 21  SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKP 80

Query: 139 IKPTETIWYIDEDQLVINLKKQDPELKWPDI 169
           I    +   +  D ++I  +K+    +W  +
Sbjct: 81  ISVEGSSKKVKTDTVLILCRKKVENTRWDYL 111

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           ++   Y ++   AE++L +          KD+ VD     L V +      +      +L
Sbjct: 5   SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVV----DGEL 60

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 61  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
           +P+  ++Y +     EI ++  +       S  I +   G  + V+         +I+  
Sbjct: 1   MPS-EAKYTWDQELNEINIQFPVT--GDADSSAIKIRMVGKKICVKNQGE----IVID-G 52

Query: 134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVES 172
           +L  ++  +   W I+ D + +N+ K+  E  W  ++  
Sbjct: 53  ELLHEVDVSSLWWVINGDVVDVNVTKKRNEW-WDSLLVG 90

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Length = 157

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 74  IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETN 133
           +P  T   ++     E+ + +Q+       ++DI        + + V             
Sbjct: 9   VPCGTPWGQWYQTLEEVFIEVQVP--PGTRAQDIQCGLQSRHVALAVGGREIL-----KG 61

Query: 134 QLFDKIKPTETIWYIDEDQL---VINLKKQDPELKWPDIVE 171
           +LFD     E  W +++ ++   V+   K+D    W  ++E
Sbjct: 62  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLE 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.94
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.94
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.94
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.89
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.89
1via_A	175	Shikimate kinase; structural genomics, transferase	99.89
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.88
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.86
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.77
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.74
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.69
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.69
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.69
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.65
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.64
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.63
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.63
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.6
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.6
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.59
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.59
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.57
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.57
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.57
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.57
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.57
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.55
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.55
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.53
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.52
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.5
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.5
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.5
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.49
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.48
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.48
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.47
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.46
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.46
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.44
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.44
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.42
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.42
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.42
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.41
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.4
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.37
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.36
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.36
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.34
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.34
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.33
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.33
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.33
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.32
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.32
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.29
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.28
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.25
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.24
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.22
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.22
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.19
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.18
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.18
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.18
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.14
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.14
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.13
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.13
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.09
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.08
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	99.07
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.06
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.03
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.0
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.0
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.99
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.98
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.97
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.94
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.88
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.84
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.75
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.7
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.69
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.68
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.66
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.62
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.62
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.58
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.57
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.54
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.53
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.53
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.45
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.43
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.43
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.41
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.37
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	98.3
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.27
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.24
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.21
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.21
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.11
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.05
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.98
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.96
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.89
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	97.8
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	97.79
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.76
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.69
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	97.68
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	97.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.58
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.49
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.46
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.42
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.35
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.34
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.34
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	97.24
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.2
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.16
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.14
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	97.14
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	97.13
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.11
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.05
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.04
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.99
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.96
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.95
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.91
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.9
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.89
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.89
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.87
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.83
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.82
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.82
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.81
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.81
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.8
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.77
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.75
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.74
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.68
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.67
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.67
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.63
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.62
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.62
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.62
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.61
3bos_A	242	Putative DNA replication factor; P-loop containing	96.61
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.61
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.6
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.6
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.6
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.58
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.56
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.47
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.45
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.42
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.36
3co5_A	143	Putative two-component system transcriptional RES	96.31
3pvs_A	447	Replication-associated recombination protein A; ma	96.3
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.29
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.26
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.23
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.21
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.19
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.18
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.16
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.15
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.14
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.12
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.12
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.12
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.12
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.11
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.11
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.11
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.03
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.97
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.93
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.89
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.88
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.86
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.84
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.81
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.78
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.78
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.77
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.75
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.72
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.71
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.69
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.58
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.57
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.57
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.48
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	95.46
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.45
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.43
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	95.43
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.42
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.42
2qgz_A	308	Helicase loader, putative primosome component; str	95.41
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.41
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.4
1g6h_A	257	High-affinity branched-chain amino acid transport	95.39
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.38
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.36
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.36
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.34
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.32
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.3
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	95.29
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.29
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.29
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.28
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.27
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.27
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.25
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.24
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.24
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.2
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.15
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.15
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.14
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.12
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.12
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.03
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.02
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.96
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.96
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.96
1tue_A	212	Replication protein E1; helicase, replication, E1E	94.95
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.95
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.94
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.93
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.89
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.86
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.83
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.81
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.76
2chq_A	319	Replication factor C small subunit; DNA-binding pr	94.76
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.75
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.74
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.73
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.72
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.71
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.7
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.69
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.69
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.68
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	94.68
2og2_A	359	Putative signal recognition particle receptor; nuc	94.65
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.62
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.61
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	94.61
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.58
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.56
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.54
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.53
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.53
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.53
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.52
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	94.5
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.48
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.46
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.46
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.45
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.35
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	94.33
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.3
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.3
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.28
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.27
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.25
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.24
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.22
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.22
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.21
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.2
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.15
2fna_A	357	Conserved hypothetical protein; structural genomic	94.14
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.14
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.13
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.09
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.07
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.04
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.03
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.01
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	93.86
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.86
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	93.83
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.8
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.79
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	93.78
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.76
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.75
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	93.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.73
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	93.7
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.63
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.62
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.53
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.53
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.51
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	93.44
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.41
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.39
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.38
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.36
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	93.36
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.34
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.31
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.31
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.29
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.22
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.22
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.18
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.18
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.16
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.16
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.14
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	93.14
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.13
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.02
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.99
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	92.99
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.94
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.93
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.9
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.9
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.89
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	92.86
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.78
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.77
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.74
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.73
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.71
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.66
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.66
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.63
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	92.6
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.58
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	92.57
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.57
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.55
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.52
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.52
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.51
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.49
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	92.48
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.46
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.46
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.44
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.43
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	92.43
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.42
2xxa_A	433	Signal recognition particle protein; protein trans	92.42
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.41
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.4
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.34
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.31
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.3
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.25
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.25
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.23
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.22
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.21
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.13
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	92.12
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	92.11
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.1
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.09
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.08
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.08
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.05
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.94
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.93
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	91.91
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.91
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	91.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	91.76
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	91.7
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	91.65
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	91.65
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.62
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.6
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.6
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	91.6
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	91.6
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.59
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	91.53
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.5
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.5
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.47
2z43_A	324	DNA repair and recombination protein RADA; archaea	91.46
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.45
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.44
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.43
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.42
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.38
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.33
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	91.28
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.27
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.26
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	91.26
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.21
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.2
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	91.15
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	91.13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.13
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.1
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	91.1
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.08
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.07
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	91.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.98
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	90.95
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.92
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.91
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	90.9
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.88
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	90.78
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	90.76
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.74
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	90.68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.66
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.63
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.61
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.61
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.6
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.53
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.47
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.47
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	90.42
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	90.4
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.38
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	90.29
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.27
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	90.25
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.2
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.19
2r6a_A	454	DNAB helicase, replicative helicase; replication,	90.09
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	90.02
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	89.99
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	89.98
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	89.97
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	89.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	89.85
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	89.83
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	89.77
3end_A	307	Light-independent protochlorophyllide reductase ir	89.69
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	89.65
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.63
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	89.51
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	89.43

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.4e-26  Score=208.41  Aligned_cols=155  Identities=17%  Similarity=0.198  Sum_probs=139.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG  264 (388)
                      +++.|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.++|...|+..|+++|.++++.+....++||+|||
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~gg  103 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGG  103 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999877789999999


Q ss_pred             CcccccccHHHHHhhcC-CcEEEEEcCccc-----c----------ccCH---HHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486          265 GQQGAAARADKWQHLYA-GFTVWLSQTEAM-----D----------ENSA---KEEARRHVKDGKLGYSNADVVVKLQGW  325 (388)
Q Consensus       265 G~~gav~r~enr~~L~~-g~VVyLd~~~e~-----D----------~~d~---~e~l~~l~~eR~~~Y~~AD~vV~~d~~  325 (388)
                      |   .+...++++.+.. +.+|||++|+++     .          ..+.   .+.+.+++++|.+.|+.||++|++++.
T Consensus       104 g---~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~  180 (199)
T 3vaa_A          104 G---APCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFNADEL  180 (199)
T ss_dssp             T---GGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEECCCC
T ss_pred             c---EEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEECCCC
Confidence            9   5888899988875 999999999987     1          1122   567899999999999999999999998


Q ss_pred             CcccHHHHHHHHHHHHHHhh
Q 016486          326 DADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       326 s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +++   +++++|++.|+.++
T Consensus       181 s~e---e~~~~I~~~l~~~l  197 (199)
T 3vaa_A          181 EDR---WQIESSVQRLQELL  197 (199)
T ss_dssp             SSH---HHHHHHHHHHHHHT
T ss_pred             CHH---HHHHHHHHHHHHHh
Confidence            765   99999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.94  E-value=8.3e-27  Score=221.55  Aligned_cols=164  Identities=21%  Similarity=0.320  Sum_probs=143.6

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhccCcHHHHHHHHHHHHHHhcC-CCe
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSH-VRA  258 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~-~~~  258 (388)
                      .+.+++..|+|+|+|||||||+++.||+.||++|+|+|.++++.. |+++.++|+..|++.||++|.+++.++... .+.
T Consensus        43 ~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~  122 (250)
T 3nwj_A           43 KPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQV  122 (250)
T ss_dssp             HHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSE
T ss_pred             hhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCc
Confidence            456678999999999999999999999999999999999999999 999999999999999999999999998865 689


Q ss_pred             EEEecCCcccccccHHHHHhhcCCcEEEEEcCccc------c-c--------c-C-------HHHHHHHHHHHhHhcccc
Q 016486          259 VVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM------D-E--------N-S-------AKEEARRHVKDGKLGYSN  315 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~------D-~--------~-d-------~~e~l~~l~~eR~~~Y~~  315 (388)
                      ||+||||   +++++++|..|+++++|||++|+++      . .        . +       ..+.+.+++++|.+.|+.
T Consensus       123 Via~GgG---~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~  199 (250)
T 3nwj_A          123 VVSTGGG---AVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTK  199 (250)
T ss_dssp             EEECCGG---GGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEecCCC---eecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence            9999999   6999999999988999999999987      1 0        0 0       146789999999999999


Q ss_pred             CcEEE------------EcCCCCcccHHHHHHHHHHHHHHhhhcCCC
Q 016486          316 ADVVV------------KLQGWDADHAKSVAQASLSALKQLIQSDKK  350 (388)
Q Consensus       316 AD~vV------------~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~  350 (388)
                      ||++|            ++++.+   +++++++|++.++.++..++.
T Consensus       200 ad~vi~~~~~~~~~~~iDTs~~s---~eev~~~I~~~i~~~~~~~~~  243 (250)
T 3nwj_A          200 ASARVSLENITLKLGYRSVSDLT---PAEIAIEAFEQVQSYLEKEDG  243 (250)
T ss_dssp             SSEEEEHHHHHHHHTCSSGGGCC---HHHHHHHHHHHHHHHHHTC--
T ss_pred             CCEEEEecccccccccccCCCCC---HHHHHHHHHHHHHHHhhcccc
Confidence            99999            556665   459999999999998876554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.94  E-value=7.4e-27  Score=205.68  Aligned_cols=155  Identities=21%  Similarity=0.241  Sum_probs=136.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      +.+|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.++|...|+..|+.+|.+++..+....++||+||||
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~   84 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGG   84 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999998777899999999


Q ss_pred             cccccccHHHHHhhcC-CcEEEEEcCccc---------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          266 QQGAAARADKWQHLYA-GFTVWLSQTEAM---------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~---------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                         +++.+.+++.|+. +++|||++|+++         +       ..+..+.+++++.+|.+.|+. ||++|++++.++
T Consensus        85 ---~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~~~~  161 (185)
T 3trf_A           85 ---VVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNP  161 (185)
T ss_dssp             ---GGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCH
T ss_pred             ---eecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCCCCH
Confidence               5899999999986 899999999876         0       012357799999999999998 999999998765


Q ss_pred             ccHHHHHHHHHHHHHHhhh
Q 016486          328 DHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       328 e~~eeVa~eIl~~L~~~~~  346 (388)
                         ++++++|++.+...+.
T Consensus       162 ---~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          162 ---RQLATQILVDIKQTYS  177 (185)
T ss_dssp             ---HHHHHHHHHHSCC---
T ss_pred             ---HHHHHHHHHHHHHHhh
Confidence               4999999988876554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.89  E-value=4.6e-23  Score=181.62  Aligned_cols=150  Identities=21%  Similarity=0.207  Sum_probs=128.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      +.|+|+|++||||||+|+.||++||++++|+|+++++..|.++.++|...|+..|++.+.++++.+....++||++|+| 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~-   81 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG-   81 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT-
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCc-
Confidence            5699999999999999999999999999999999999999999999988899999999998888887666789999988 


Q ss_pred             ccccccHHHHHhhcCCcEEEEEcCccc--------c------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHH
Q 016486          267 QGAAARADKWQHLYAGFTVWLSQTEAM--------D------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAK  331 (388)
Q Consensus       267 ~gav~r~enr~~L~~g~VVyLd~~~e~--------D------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~e  331 (388)
                        +++.+.+|+.|+.+.+|||++|.++        +      ..+..+.+..++.+|.+.|.. +|++|++++.++   +
T Consensus        82 --~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~---e  156 (184)
T 2iyv_A           82 --AVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNP---G  156 (184)
T ss_dssp             --GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCH---H
T ss_pred             --EEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCH---H
Confidence              5888888887767899999999887        1      123456788899999999976 999999997665   4


Q ss_pred             HHHHHHHHHHH
Q 016486          332 SVAQASLSALK  342 (388)
Q Consensus       332 eVa~eIl~~L~  342 (388)
                      +++++|+..++
T Consensus       157 e~~~~I~~~l~  167 (184)
T 2iyv_A          157 AVVRHILSRLQ  167 (184)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHHHh
Confidence            88888876653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.89  E-value=4.9e-23  Score=179.30  Aligned_cols=144  Identities=17%  Similarity=0.239  Sum_probs=121.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe-EEEecCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA-VVATLGG  265 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~-VVStGGG  265 (388)
                      .+|+|+|++||||||+|+.||++||++|+|+|+++++..|.++.++|...|++.|+++|.+++..+....++ ||++|+|
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~g   87 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGG   87 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCGG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence            689999999999999999999999999999999999999999999999999999999999999888766677 9999888


Q ss_pred             cccccccHHHHHhhcC-CcEEEEEcCccc------cc-----cC-H-HHHHHHHHHHhHhcccc-CcEEEEcCCCCcccH
Q 016486          266 QQGAAARADKWQHLYA-GFTVWLSQTEAM------DE-----NS-A-KEEARRHVKDGKLGYSN-ADVVVKLQGWDADHA  330 (388)
Q Consensus       266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~------D~-----~d-~-~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~  330 (388)
                         .+.. ++   |+. +.+|||++|+++      ..     +. . .+.+.+++.+|.+.|.. +|++|++++ ++   
T Consensus        88 ---~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a~~~Id~~~-~~---  156 (168)
T 1zuh_A           88 ---IVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARG-GL---  156 (168)
T ss_dssp             ---GGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTCSEEEEGGG-CH---
T ss_pred             ---Eech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHCCEEEECCC-CH---
Confidence               4655 44   554 789999999987      11     00 1 46788899999999987 999999988 54   


Q ss_pred             HHHHHHHHHHH
Q 016486          331 KSVAQASLSAL  341 (388)
Q Consensus       331 eeVa~eIl~~L  341 (388)
                      ++++++|...|
T Consensus       157 e~~~~~I~~~l  167 (168)
T 1zuh_A          157 NNSLKQVLQFI  167 (168)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            48888887654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.89  E-value=1.5e-22  Score=177.69  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=124.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|++||||||+|+.||+.||++|+|+|+++++..|+++.++|...|+..|+++|.++++.+....++||+||+| 
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~-   83 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG-   83 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT-
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC-
Confidence            3799999999999999999999999999999999999999999999998899999999999998888767899999988 


Q ss_pred             ccccccHHHHHhhcC-CcEEEEEcCccc-------c--cc--C--HHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHH
Q 016486          267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------D--EN--S--AKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAK  331 (388)
Q Consensus       267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D--~~--d--~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~e  331 (388)
                        .+.. .+   |+. +.+|||++|++.       .  ..  .  ..+.+.+++.+|.++|.. ++++|++++.++   +
T Consensus        84 --~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~---e  154 (175)
T 1via_A           84 --FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNI---D  154 (175)
T ss_dssp             --GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEECTTCCH---H
T ss_pred             --Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcCCEEEECCCCCH---H
Confidence              4655 43   544 899999999887       1  01  1  156789999999999986 999999998765   4


Q ss_pred             HHHHHHHHHHH
Q 016486          332 SVAQASLSALK  342 (388)
Q Consensus       332 eVa~eIl~~L~  342 (388)
                      +++++|+..++
T Consensus       155 ev~~~I~~~l~  165 (175)
T 1via_A          155 ELLSEIKKVIK  165 (175)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999888774

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.88  E-value=1.3e-22  Score=176.38  Aligned_cols=151  Identities=24%  Similarity=0.296  Sum_probs=126.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      +..|+|+|++||||||+++.||..+|++++|+|.++++..+..+..+|+..|+..|+..|..++..+....++|+++|+|
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~~   83 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   83 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCCe
Confidence            56899999999999999999999999999999999998888899999998899999999988888887767899999877


Q ss_pred             cccccccHHHHHhhcC-CcEEEEEcCccc-------c-------ccCH-HHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486          266 QQGAAARADKWQHLYA-GFTVWLSQTEAM-------D-------ENSA-KEEARRHVKDGKLGYSN-ADVVVKLQGWDAD  328 (388)
Q Consensus       266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D-------~~d~-~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e  328 (388)
                         .+....+++.|+. +++|||++++++       .       ..++ .+.+..++.+|.+.|.. ||++|++++.++ 
T Consensus        84 ---~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~~~~~~-  159 (173)
T 1kag_A           84 ---SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSA-  159 (173)
T ss_dssp             ---GGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----CH-
T ss_pred             ---EEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEECCCCCH-
Confidence               5778888888876 899999999887       1       1233 67889999999999987 999999987665 


Q ss_pred             cHHHHHHHHHHHHH
Q 016486          329 HAKSVAQASLSALK  342 (388)
Q Consensus       329 ~~eeVa~eIl~~L~  342 (388)
                        ++++++|...++
T Consensus       160 --~~~~~~i~~~l~  171 (173)
T 1kag_A          160 --KVVANQIIHMLE  171 (173)
T ss_dssp             --HHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHH
Confidence              489998888764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.87  E-value=7e-22  Score=170.96  Aligned_cols=149  Identities=21%  Similarity=0.251  Sum_probs=125.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      +.|+|+|++||||||+++.|++.||++++|+|+++.+..|..+.+++...|+..|+.++.+++..+...+.+||++|+| 
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~-   79 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG-   79 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH-
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC-
Confidence            4799999999999999999999999999999999999999999999998999999999999998887666789998877 


Q ss_pred             ccccccHHHHHhhcC-CcEEEEEcCccc------c---cc---CHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHH
Q 016486          267 QGAAARADKWQHLYA-GFTVWLSQTEAM------D---EN---SAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSV  333 (388)
Q Consensus       267 ~gav~r~enr~~L~~-g~VVyLd~~~e~------D---~~---d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeV  333 (388)
                        ..+.+.+++.|+. +.+|||++|+++      .   .+   +..+.+++.|.+|.+.|..+|++| ++..++   +++
T Consensus        80 --~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~---~~~  153 (168)
T 2pt5_A           80 --LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-KGEKPP---EEV  153 (168)
T ss_dssp             --HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-ECSSCH---HHH
T ss_pred             --EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-CCCCCH---HHH
Confidence              4777888888875 899999999987      1   11   224568888988888887799998 665554   589


Q ss_pred             HHHHHHHHH
Q 016486          334 AQASLSALK  342 (388)
Q Consensus       334 a~eIl~~L~  342 (388)
                      +++|...+.
T Consensus       154 ~~~i~~~l~  162 (168)
T 2pt5_A          154 VKEILLSLE  162 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887775

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.86  E-value=9.3e-22  Score=170.57  Aligned_cols=149  Identities=22%  Similarity=0.258  Sum_probs=125.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      +.|+|+|++||||||+|+.||+.||++++|+|.++++..|.++.+++...|+..|++++..++..+. ..++||++||| 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~-   80 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG-   80 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT-
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc-
Confidence            5799999999999999999999999999999999999889899999888899999999999998887 56789999988 


Q ss_pred             ccccccHHHHHhhcC-CcEEEEEcCccc-----c--cc----------CHHHHHHHHHHHhHhccccCcEEEEcCCCCcc
Q 016486          267 QGAAARADKWQHLYA-GFTVWLSQTEAM-----D--EN----------SAKEEARRHVKDGKLGYSNADVVVKLQGWDAD  328 (388)
Q Consensus       267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-----D--~~----------d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e  328 (388)
                        .++.+.+++.|+. +.+|||++|+++     .  ..          +..+.++..+.+|.+.|..+|++|++++.++ 
T Consensus        81 --~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~-  157 (173)
T 1e6c_A           81 --MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPP-  157 (173)
T ss_dssp             --GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCH-
T ss_pred             --EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCH-
Confidence              5788888888864 899999999876     1  11          1234577778888888877999999997665 


Q ss_pred             cHHHHHHHHHHHHH
Q 016486          329 HAKSVAQASLSALK  342 (388)
Q Consensus       329 ~~eeVa~eIl~~L~  342 (388)
                        ++++++|...++
T Consensus       158 --~~~~~~i~~~l~  169 (173)
T 1e6c_A          158 --AAIVCELMQTMR  169 (173)
T ss_dssp             --HHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHhc
Confidence              488888877664

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.77  E-value=4.8e-19  Score=161.95  Aligned_cols=149  Identities=14%  Similarity=0.096  Sum_probs=103.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhhccCcHH--HH----------------
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDS--VV----------------  242 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~~~Ge~~--FR----------------  242 (388)
                      ++...|.|.|++||||||||+.||++||++|+| +++++..+   |++. ++|...||..  |+                
T Consensus         4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T 3fdi_A            4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQD   81 (201)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHH
Confidence            356789999999999999999999999999999 66776543   4453 5677667764  34                


Q ss_pred             --HHHHHHHHHHh--cCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc-------c----ccCHHHHHHHHHH
Q 016486          243 --NGECDVLESLS--SHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM-------D----ENSAKEEARRHVK  307 (388)
Q Consensus       243 --e~E~~vL~~L~--~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D----~~d~~e~l~~l~~  307 (388)
                        +.|.++++++.  ..+++||...||.  .++.. +    ..+++|||++|++.       +    .+++.+.+.++.+
T Consensus        82 ~~~~~~~~i~~la~~~~~~~Vi~Gr~g~--~vl~~-~----~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~  154 (201)
T 3fdi_A           82 IAIRQFNFIRKKANEEKESFVIVGRCAE--EILSD-N----PNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDK  154 (201)
T ss_dssp             HHHHHHHHHHHHHHTSCCCEEEESTTHH--HHTTT-C----TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEECCcc--hhcCC-C----CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence              57889999998  7778888753331  34432 1    23789999999988       1    2345667888889


Q ss_pred             HhHhcccc-----------CcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          308 DGKLGYSN-----------ADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       308 eR~~~Y~~-----------AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      +|.++|+.           +|++|++++.+++   ++++.|+..++..
T Consensus       155 ~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~e---evv~~I~~~i~~~  199 (201)
T 3fdi_A          155 MRKVYHNFYCESKWGDSRTYDICIKIGKVDVD---TATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHHHHHCSSCTTBGGGCSEEEEESSSCHH---HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCCCCcccCCEEEECCCCCHH---HHHHHHHHHHHHh
Confidence            99988865           6999999998765   9999999888753

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.74  E-value=2.5e-18  Score=160.71  Aligned_cols=147  Identities=14%  Similarity=0.112  Sum_probs=105.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhccCcH------------------------
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAEGSD------------------------  239 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~Ge~------------------------  239 (388)
                      +..|.|.|++||||||||+.||++||++|+|.|.+.+..  .|.+. +.|...+|.                        
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~   92 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN   92 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCH-HHHHHHHhhccccHHHHHhcccccccccccccc
Confidence            568999999999999999999999999999977654433  23333 234333332                        


Q ss_pred             -------HHHHHHHHHHHHHhcCCCeEEE-ecCCccccccc--HHHHHhhcCCcEEEEEcCccc-------c----ccCH
Q 016486          240 -------SVVNGECDVLESLSSHVRAVVA-TLGGQQGAAAR--ADKWQHLYAGFTVWLSQTEAM-------D----ENSA  298 (388)
Q Consensus       240 -------~FRe~E~~vL~~L~~~~~~VVS-tGGG~~gav~r--~enr~~L~~g~VVyLd~~~e~-------D----~~d~  298 (388)
                             .....+.+++++++..+++||+ +|||   ++++  +++    ..+++|||++|++.       +    ..++
T Consensus        93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg---~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a  165 (223)
T 3hdt_A           93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAG---YVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVDCIDEERA  165 (223)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHSCEEEESTTHH---HHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcc---hhcccccCC----CCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence                   1224567888888876778887 7777   4653  222    23789999999988       1    2346


Q ss_pred             HHHHHHHHHHhHhccc-----------cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          299 KEEARRHVKDGKLGYS-----------NADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       299 ~e~l~~l~~eR~~~Y~-----------~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      .+.++++.++|.++|+           .+|++|+++..+++   ++++.|+..++.
T Consensus       166 ~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~e---evv~~I~~~i~~  218 (223)
T 3hdt_A          166 KRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLE---ETAELIKAYIRL  218 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHH---HHHHHHHHHHHH
Confidence            7788999999999997           69999999998765   999999998874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.69  E-value=9.6e-17  Score=139.83  Aligned_cols=145  Identities=16%  Similarity=0.007  Sum_probs=95.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcC--------chhhhhhccCcHHHHHHHHHH---HHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQ--------TIDSWMLAEGSDSVVNGECDV---LES  251 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~--------sI~eif~~~Ge~~FRe~E~~v---L~~  251 (388)
                      .++.|+|+|+|||||||+|+.||++|+.+|++  +|.+++...++        ++.+++...+++.||..+..+   ++.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            46789999999999999999999999998885  89888765543        222334445678888887655   445


Q ss_pred             HhcCCC-eEEEecCCcccccccHHHHHhhcC-C-cEEEEEcCccccccCHHHHHHHHHHHh------------Hhc--cc
Q 016486          252 LSSHVR-AVVATLGGQQGAAARADKWQHLYA-G-FTVWLSQTEAMDENSAKEEARRHVKDG------------KLG--YS  314 (388)
Q Consensus       252 L~~~~~-~VVStGGG~~gav~r~enr~~L~~-g-~VVyLd~~~e~D~~d~~e~l~~l~~eR------------~~~--Y~  314 (388)
                      +...+. +||.+.-. ++...++.+++.++. + ++|||++|+++        +.++...|            +..  |.
T Consensus        82 ~~~~g~~vi~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~~~~e~--------l~~R~~~r~~~~~~~~~~~~~~~~~~~  152 (178)
T 1qhx_A           82 MARAGARIIIDDVFL-GGAAAQERWRSFVGDLDVLWVGVRCDGAV--------AEGRETARGDRVAGMAAKQAYVVHEGV  152 (178)
T ss_dssp             HHHTTCEEEEEECCT-TTHHHHHHHHHHHTTCCEEEEEEECCHHH--------HHHHHHHTSSSCTTHHHHHTTGGGTTC
T ss_pred             HHhcCCeEEEEeccc-cChHHHHHHHHHhcCCcEEEEEEECCHHH--------HHHHHHhhCCcccchhhhhchhhccCC
Confidence            544444 44444210 001224566777764 4 58899998765        12222211            112  44


Q ss_pred             cCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          315 NADVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       315 ~AD~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      .+|++|++++.+++   +++++|+..+
T Consensus       153 ~~d~~idt~~~~~~---~~~~~I~~~l  176 (178)
T 1qhx_A          153 EYDVEVDTTHKESI---ECAWAIAAHV  176 (178)
T ss_dssp             CCSEEEETTSSCHH---HHHHHHHTTC
T ss_pred             CCcEEEECCCCCHH---HHHHHHHHHh
Confidence            58999999988754   8988887654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.69  E-value=1.3e-16  Score=135.88  Aligned_cols=146  Identities=11%  Similarity=0.046  Sum_probs=102.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc----------hhhhhhccCcHHHHHHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----------IDSWMLAEGSDSVVNGECDVLESLSSHV  256 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s----------I~eif~~~Ge~~FRe~E~~vL~~L~~~~  256 (388)
                      +.|+|+|++||||||+++.| +.+|++++++|+++++..+..          ...++...|+..|+++..+.++.  ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence            57999999999999999999 999999999999988765321          23344446777887766555532  334


Q ss_pred             CeEEEecCCcccccccHHHHHhhcC-----CcEEEEEcCccc--------cc---cCHHHHHHHHHHH--h--H-hcccc
Q 016486          257 RAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM--------DE---NSAKEEARRHVKD--G--K-LGYSN  315 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~--------D~---~d~~e~l~~l~~e--R--~-~~Y~~  315 (388)
                      ..||.+|      ...+.++..|..     ..+|||++|+++        +.   ....+.+.+++..  +  . .++..
T Consensus        79 ~~vi~dg------~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  152 (179)
T 3lw7_A           79 DLVVFDG------VRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAM  152 (179)
T ss_dssp             SCEEEEC------CCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             CeEEEeC------CCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHh
Confidence            5777776      256666666653     279999999988        11   1224455555432  2  2 23345


Q ss_pred             CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          316 ADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       316 AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      ||++|++++ +   +++++++|...++.++
T Consensus       153 ad~vId~~~-~---~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          153 ADYIITNDS-N---YEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             CSEEEECCS-C---HHHHHHHHHHHHHHHC
T ss_pred             CCEEEECCC-C---HHHHHHHHHHHHHHHh
Confidence            999999876 4   4599999999887654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.69  E-value=2.7e-16  Score=137.21  Aligned_cols=146  Identities=11%  Similarity=0.040  Sum_probs=102.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH-----H-HhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE-----T-FAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR  257 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE-----~-~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~  257 (388)
                      .++..|+|+|++||||||+++.|++.+|+.++|+|++..     + ..|..+.+   ..++..|+.+|..+...+.....
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   82 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAMQRTNKV   82 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHHCSE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHHHhcCCc
Confidence            457889999999999999999999999999999999842     2 24544432   23556777777644433333345


Q ss_pred             eEEEecCCcccccccHHHHHhhcC-C---cEEEEEcCccc-------cc--cCHHHHHHHHHHHhHhc-ccc-CcEEEEc
Q 016486          258 AVVATLGGQQGAAARADKWQHLYA-G---FTVWLSQTEAM-------DE--NSAKEEARRHVKDGKLG-YSN-ADVVVKL  322 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~-------D~--~d~~e~l~~l~~eR~~~-Y~~-AD~vV~~  322 (388)
                      +||++|+      ..+.+++.++. +   .+|||++|+++       ..  ....+.+...+..+++. |.. +|++|++
T Consensus        83 ~vi~~~~------~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~  156 (175)
T 1knq_A           83 SLIVCSA------LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDI  156 (175)
T ss_dssp             EEEECCC------CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEEC
T ss_pred             EEEEeCc------hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCcccCCCCeEEEeC
Confidence            7777763      35667777764 3   69999999887       11  11244555566655555 665 8999998


Q ss_pred             CCCCcccHHHHHHHHHHHHH
Q 016486          323 QGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~  342 (388)
                      + .+   +++++++|...+.
T Consensus       157 ~-~~---~~~~~~~i~~~l~  172 (175)
T 1knq_A          157 D-QP---LEGVVASTIEVIK  172 (175)
T ss_dssp             S-SC---HHHHHHHHHHHHH
T ss_pred             C-CC---HHHHHHHHHHHHh
Confidence            7 44   4599999888775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.65  E-value=1.2e-15  Score=137.02  Aligned_cols=150  Identities=9%  Similarity=-0.009  Sum_probs=108.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH------HhcCchhhhhhccCcHHHHHHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET------FAKQTIDSWMLAEGSDSVVNGECDVLESLSSH  255 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~------~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~  255 (388)
                      ...++..|+|+|++||||||+++.|+..+|+.++|+|++...      ..|..+.+   ......++.+|..++..+...
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~g  101 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTD---EDRWPWLRSLAEWMDARADAG  101 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCC---cccccHHHHHHHHHHHHHhcC
Confidence            334678999999999999999999999999999999998422      22332221   223445666776666655555


Q ss_pred             CCeEEEecCCcccccccHHHHHhhcC----CcEEEEEcCccc-------c--ccCHHHHHHHHHHHhHhcccc-CcEEEE
Q 016486          256 VRAVVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM-------D--ENSAKEEARRHVKDGKLGYSN-ADVVVK  321 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~-------D--~~d~~e~l~~l~~eR~~~Y~~-AD~vV~  321 (388)
                      ..+||.++      ...+.+++.+..    ..+|||+++.++       .  .....+.+..++++|++.|.. ++++|+
T Consensus       102 ~~viid~~------~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id  175 (200)
T 4eun_A          102 VSTIITCS------ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPDESGIVLD  175 (200)
T ss_dssp             CCEEEEEC------CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTTSCEEEEE
T ss_pred             CCEEEEch------hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCCCCeEEEE
Confidence            56777775      345777777764    479999999887       1  122346688889999999987 899999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHHh
Q 016486          322 LQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      +++ +   +++++++|...|+..
T Consensus       176 ~~~-~---~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          176 LRQ-P---PEQLIERALTWLDIA  194 (200)
T ss_dssp             TTS-C---HHHHHHHHHHHHCCC
T ss_pred             CCC-C---HHHHHHHHHHHHHhc
Confidence            875 4   459999998887643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.64  E-value=1.7e-17  Score=145.74  Aligned_cols=143  Identities=15%  Similarity=0.123  Sum_probs=96.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHH--HHHH---HHHHhcCCC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNG--ECDV---LESLSSHVR  257 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~--E~~v---L~~L~~~~~  257 (388)
                      .+++..|+|+|++||||||+++.||+.+|+.++|+|+++++.      .++...|+..|+.+  +..+   +..+...+.
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE------QLYDGYDEEYDCPILDEDRVVDELDNQMREGG   81 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH------TCEEEEETTTTEEEECHHHHHHHHHHHHHHCC
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc------chhhhhhhhhcCccCChHHHHHHHHHHHhcCC
Confidence            346788999999999999999999999999999999998876      23333344433221  1112   222222234


Q ss_pred             eEEEecCCcccccccHHHHHhhc---CCcEEEEEcCccc-------cc-c-------CHHHHHHHHHHHhHhccccCcEE
Q 016486          258 AVVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEAM-------DE-N-------SAKEEARRHVKDGKLGYSNADVV  319 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~---~g~VVyLd~~~e~-------D~-~-------d~~e~l~~l~~eR~~~Y~~AD~v  319 (388)
                      .||...+.           ..+.   .+.+|||++++++       .+ .       ...+.+..++++|.+.|. +|++
T Consensus        82 ~vv~~~~~-----------~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~  149 (180)
T 3iij_A           82 VIVDYHGC-----------DFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIV  149 (180)
T ss_dssp             EEEECSCC-----------TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGE
T ss_pred             EEEEechh-----------hhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeE
Confidence            55532221           2222   4789999999988       11 1       112456778999999998 6889


Q ss_pred             EEcCCCCcccHHHH---HHHHHHHHHHhhh
Q 016486          320 VKLQGWDADHAKSV---AQASLSALKQLIQ  346 (388)
Q Consensus       320 V~~d~~s~e~~eeV---a~eIl~~L~~~~~  346 (388)
                      |++++.+++   ++   +.+|+..|+++..
T Consensus       150 i~~~~~~~~---ev~~~v~~i~~~l~~~~~  176 (180)
T 3iij_A          150 HQLPSNKPE---ELENNVDQILKWIEQWIK  176 (180)
T ss_dssp             EEEECSSHH---HHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCHH---HHHHHHHHHHHHHHHHHH
Confidence            999987754   77   7777777776543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.63  E-value=1.5e-15  Score=133.72  Aligned_cols=151  Identities=18%  Similarity=0.212  Sum_probs=99.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHH----hc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESL----SS  254 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L----~~  254 (388)
                      +++.|+|+|++||||||+|+.||+.||++++|+|+++++.      .|..+.+++. .|+..|++....++...    ..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence            5678999999999999999999999999999999998874      3445666665 36655555444443332    22


Q ss_pred             CCCeEEEecCCcccccccHHHHHh----hc-CCcEEEEEcCccc--------cc------cC---HHHHHHHHHHHhHhc
Q 016486          255 HVRAVVATLGGQQGAAARADKWQH----LY-AGFTVWLSQTEAM--------DE------NS---AKEEARRHVKDGKLG  312 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~~----L~-~g~VVyLd~~~e~--------D~------~d---~~e~l~~l~~eR~~~  312 (388)
                      .+..||..|-     ....+.++.    +. .+.+|||++|+++        +.      ..   ..+++...+.++.+.
T Consensus        87 ~~~~vi~d~~-----~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~  161 (196)
T 2c95_A           87 TSKGFLIDGY-----PREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPV  161 (196)
T ss_dssp             TCSCEEEESC-----CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHH
T ss_pred             cCCcEEEeCC-----CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3455665552     222222222    23 3789999999987        11      11   133456666677664


Q ss_pred             ---cccCcEE--EEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          313 ---YSNADVV--VKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       313 ---Y~~AD~v--V~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                         |..++.+  |+.+ .+   +++++++|...++.++
T Consensus       162 ~~~~~~~~~~~~Id~~-~~---~e~v~~~i~~~l~~~~  195 (196)
T 2c95_A          162 IAFYEKRGIVRKVNAE-GS---VDSVFSQVCTHLDALL  195 (196)
T ss_dssp             HHHHHHHTCEEEEECC-SC---HHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCcEEEEECC-CC---HHHHHHHHHHHHHHhc
Confidence               5556643  5543 33   5699999999887653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.63  E-value=4.1e-17  Score=145.08  Aligned_cols=146  Identities=16%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh-cCCcceechhHHHHHhcCchhhhhhccCcHHHH--HHHHHHHHHH---h-c
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG-LGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESL---S-S  254 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~-LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FR--e~E~~vL~~L---~-~  254 (388)
                      ...+++.|+|+|+|||||||+|+.||+. +|++|+|+|+++++..   +.+.+.+..+..|.  ..|..+++.+   . .
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~   82 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH---FYTEYDTELDTHIIEEKDEDRLLDFMEPIMVS   82 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT---CSCC------CCCCCHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh---hhhhHHHHhhhcccCCCCHHHHHHHHHHHHhc
Confidence            3446789999999999999999999999 8999999999998742   11111111111121  2232333322   2 2


Q ss_pred             CCCeEEEecCCcccccccHHHHHhhc---CCcEEEEEcCccc-------cccC---HHH-----HHHHHHHHhHhccccC
Q 016486          255 HVRAVVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEAM-------DENS---AKE-----EARRHVKDGKLGYSNA  316 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~~L~---~g~VVyLd~~~e~-------D~~d---~~e-----~l~~l~~eR~~~Y~~A  316 (388)
                      .+..|+ ++-          ++..+.   .+.+|||++|.++       ...+   ..+     .+..++.+|.+.|+ +
T Consensus        83 ~g~~vi-~~~----------~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~  150 (184)
T 1y63_A           83 RGNHVV-DYH----------SSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-D  150 (184)
T ss_dssp             SSEEEE-ECS----------CCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-G
T ss_pred             cCCEEE-eCc----------hHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-c
Confidence            222222 221          222332   3689999999987       1111   111     14455788999998 6


Q ss_pred             cEEEEcCCCCcccHHHH---HHHHHHHHHHhh
Q 016486          317 DVVVKLQGWDADHAKSV---AQASLSALKQLI  345 (388)
Q Consensus       317 D~vV~~d~~s~e~~eeV---a~eIl~~L~~~~  345 (388)
                      |++|++++.++   +++   +++|+..++.+.
T Consensus       151 ~~vi~~n~~~~---~~~~~~v~~i~~~l~~~~  179 (184)
T 1y63_A          151 DIVLVRENDTL---EQMAATVEEIRERVEVLK  179 (184)
T ss_dssp             GGEEEEECSSH---HHHHHHHHHHHHHHHHHC
T ss_pred             CcEEECCCCCH---HHHHHHHHHHHHHHHHHH
Confidence            88898776665   477   666666665544

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.60  E-value=3.1e-15  Score=130.49  Aligned_cols=148  Identities=14%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHHHhc--CCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLSS--HVR  257 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~L~~--~~~  257 (388)
                      ++.|+|+|++||||||+++.|++.||++++|+|+++.+..      +..+.++|.. |+..+++.+..++.....  .+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~   84 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK   84 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence            4679999999999999999999999999999999887763      2345556653 555555555556555432  234


Q ss_pred             eEEEecCCcccccccHHHHHhh----c----CCcEEEEEcCccc--------cc-----cC----HHHHHHHHHHHhHh-
Q 016486          258 AVVATLGGQQGAAARADKWQHL----Y----AGFTVWLSQTEAM--------DE-----NS----AKEEARRHVKDGKL-  311 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L----~----~g~VVyLd~~~e~--------D~-----~d----~~e~l~~l~~eR~~-  311 (388)
                      .||..|-     ....+.++.+    .    .+++|||++|+++        +.     .+    ..++++..+++|.+ 
T Consensus        85 ~vi~d~~-----~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~  159 (194)
T 1qf9_A           85 NFLVDGF-----PRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLV  159 (194)
T ss_dssp             CEEEETC-----CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHH
T ss_pred             CEEEeCc-----CCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHH
Confidence            5665552     3444444333    3    2579999999987        11     11    12334444555555 


Q ss_pred             --ccccCc--EEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          312 --GYSNAD--VVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       312 --~Y~~AD--~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                        .|..+|  ++|+++ .+   +++++++|...++.
T Consensus       160 ~~~~~~~~~~~~id~~-~~---~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          160 IDHYNKFDKVKIIPAN-RD---VNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHTTCEEEEECS-SC---HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEECC-CC---HHHHHHHHHHHHHH
Confidence              455577  567665 33   55999999888765

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.60  E-value=1e-14  Score=125.28  Aligned_cols=141  Identities=11%  Similarity=0.095  Sum_probs=97.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe----
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT----  262 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt----  262 (388)
                      +.|+|+|++||||||+++.||++||++|+|.|.++....  .+..+|        .     ..+.+.. +..||+.    
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--~~~~~~--------~-----~~~~l~~-~~~vi~dr~~~   65 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--GNEKLF--------E-----HFNKLAD-EDNVIIDRFVY   65 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--CHHHHH--------H-----HHHHHTT-CCSEEEESCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--HHHHHH--------H-----HHHHHHh-CCCeEEeeeec
Confidence            469999999999999999999999999999999876543  122222        1     1122322 2334432    


Q ss_pred             ------cCCcccccccHHHHHhhc-----CCcEEEEEcCccc----------c--ccCHHHHHHHHHHHhHhccccCcEE
Q 016486          263 ------LGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM----------D--ENSAKEEARRHVKDGKLGYSNADVV  319 (388)
Q Consensus       263 ------GGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~----------D--~~d~~e~l~~l~~eR~~~Y~~AD~v  319 (388)
                            ++|.........++..+.     .+.+|||++|+++          +  ..+..+.+.+.|++|.+.|..++++
T Consensus        66 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (173)
T 3kb2_A           66 SNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYS  145 (173)
T ss_dssp             HHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             chHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEEE
Confidence                  000000134555555443     3689999999987          1  1224567888899999999888899


Q ss_pred             EEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          320 VKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       320 V~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      |++++.++   ++++++|...++....
T Consensus       146 id~~~~~~---~ev~~~I~~~~~~~~~  169 (173)
T 3kb2_A          146 WDTGQWSS---DEIAKDIIFLVELEHH  169 (173)
T ss_dssp             EETTTSCH---HHHHHHHHHHHHHGGG
T ss_pred             EECCCCCH---HHHHHHHHHHHhCCCc
Confidence            99887665   4999999999987654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.59  E-value=6.2e-15  Score=131.84  Aligned_cols=146  Identities=16%  Similarity=0.093  Sum_probs=97.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH--hcCchhhhhhcc-CcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWMLAE-GSDSVVNGECDVLESLSSHVRAVVAT  262 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~--~g~sI~eif~~~-Ge~~FRe~E~~vL~~L~~~~~~VVSt  262 (388)
                      .+.|+|+|++||||||+++.|++.+|+.++|+|.++...  .++.....+... .+..++.++.    .+.....+||.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~----~~~~~~~vivd~   93 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE----RLASREPVVVSC   93 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH----HHTSSSCCEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH----HHhcCCCEEEEC
Confidence            468999999999999999999999999999999985321  111111222221 2233333222    123333466665


Q ss_pred             cCCcccccccHHHHHhhcC-----CcEEEEEcCccc--------c-ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          263 LGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM--------D-ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       263 GGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~--------D-~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                      ++      .....++.+..     ..+|||++|.++        + .....+.+.++++.+++.|.. ++++|+++ .+ 
T Consensus        94 ~~------~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~-~~-  165 (202)
T 3t61_A           94 SA------LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVA-QP-  165 (202)
T ss_dssp             CC------CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCTTSTTEEEEESS-SC-
T ss_pred             CC------CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCCCCCCeEEEeCC-CC-
Confidence            53      34555665553     479999999887        1 123356677788888777765 88999988 44 


Q ss_pred             ccHHHHHHHHHHHHHHhh
Q 016486          328 DHAKSVAQASLSALKQLI  345 (388)
Q Consensus       328 e~~eeVa~eIl~~L~~~~  345 (388)
                        +++++++|+..|+...
T Consensus       166 --~~e~~~~I~~~l~~~~  181 (202)
T 3t61_A          166 --LAEIVREALAGLARLA  181 (202)
T ss_dssp             --HHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhh
Confidence              5699999999987654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.59  E-value=3.1e-15  Score=131.09  Aligned_cols=145  Identities=16%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~  258 (388)
                      +|+.|+|+|++||||||+++.||+.||++++|+|+++++.      .|..+.++|.. |+..+++.+..++......+  
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~--   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAER--   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCSE--
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcCC--
Confidence            5678999999999999999999999999999999998875      34456677764 77777777777776655433  


Q ss_pred             EEEecCCcccccccHHHHH----hhc-----CCcEEEEEcCccc--------c---c--cCHHHH----HHHHHHHhHh-
Q 016486          259 VVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAM--------D---E--NSAKEE----ARRHVKDGKL-  311 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~----~L~-----~g~VVyLd~~~e~--------D---~--~d~~e~----l~~l~~eR~~-  311 (388)
                      ||..|-     ......+.    .+.     .+.+|||++|+++        .   +  .+..+.    +...+.++.+ 
T Consensus        80 ~i~dg~-----~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l  154 (186)
T 3cm0_A           80 VIFDGF-----PRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPL  154 (186)
T ss_dssp             EEEESC-----CCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            555542     23322222    233     2579999999877        1   1  122222    3333444444 


Q ss_pred             --ccccC--cEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          312 --GYSNA--DVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       312 --~Y~~A--D~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                        .|..+  +++|+.+ .+   +++++++|.+.+
T Consensus       155 ~~~~~~~~~~~~id~~-~~---~~~v~~~i~~~l  184 (186)
T 3cm0_A          155 VGYYEARGVLKRVDGL-GT---PDEVYARIRAAL  184 (186)
T ss_dssp             HHHHHHTTCEEEEECC-SC---HHHHHHHHHHHH
T ss_pred             HHHHHhcCcEEEEECC-CC---HHHHHHHHHHHh
Confidence              45545  3556654 33   568998888765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.57  E-value=7.7e-15  Score=128.20  Aligned_cols=149  Identities=16%  Similarity=0.244  Sum_probs=94.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc-------CchhhhhhccCcHHHHHHHHHHHHH-----H
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK-------QTIDSWMLAEGSDSVVNGECDVLES-----L  252 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g-------~sI~eif~~~Ge~~FRe~E~~vL~~-----L  252 (388)
                      +++.|+|+|++||||||+++.||+.+|++++|.|+++++...       ..+.+++. .|+..+++.+..++..     +
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~   80 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM   80 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence            567899999999999999999999999999999999877642       22444454 4654444443333321     1


Q ss_pred             h--cCCCeEEEecCCcccccccHHHHHh----hc----CCcEEEEEcCccc--------c---c--cC----HHHHHHHH
Q 016486          253 S--SHVRAVVATLGGQQGAAARADKWQH----LY----AGFTVWLSQTEAM--------D---E--NS----AKEEARRH  305 (388)
Q Consensus       253 ~--~~~~~VVStGGG~~gav~r~enr~~----L~----~g~VVyLd~~~e~--------D---~--~d----~~e~l~~l  305 (388)
                      .  ..+..||..|     .....+.++.    +.    .+.+|||++|+++        +   +  .+    ....+...
T Consensus        81 ~~~~~~~~vi~dg-----~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~  155 (196)
T 1tev_A           81 AANAQKNKFLIDG-----FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTY  155 (196)
T ss_dssp             HHCTTCCEEEEES-----CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHH
T ss_pred             ccccCCCeEEEeC-----CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHH
Confidence            1  1244566544     2444444332    22    2579999999887        1   0  11    12234444


Q ss_pred             HHHhHh---cccc-CcE-EEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          306 VKDGKL---GYSN-ADV-VVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       306 ~~eR~~---~Y~~-AD~-vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +..+.+   +|.. +++ +|+++ .+   +++++++|.+.++.
T Consensus       156 ~~~~~~~~~~y~~~~~~~~id~~-~~---~~~v~~~i~~~l~~  194 (196)
T 1tev_A          156 LQSTKPIIDLYEEMGKVKKIDAS-KS---VDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETT-SC---HHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHhcCCEEEEECC-CC---HHHHHHHHHHHHHh
Confidence            455555   5765 675 67776 44   45999999888764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.57  E-value=1.7e-14  Score=131.11  Aligned_cols=151  Identities=12%  Similarity=0.066  Sum_probs=98.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcH----HHHH-HHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSD----SVVN-GECDVLESLS  253 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~----~FRe-~E~~vL~~L~  253 (388)
                      +++.|+|+|++||||||+|+.||+.||+.++|+|+++++.      .|+.+.+++.. |+.    .|.. ++..+.....
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK-GQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHc-CCcCCHHHHHHHHHHHHhhccc
Confidence            3578999999999999999999999999999999998873      44556666653 332    2332 3333332222


Q ss_pred             cCCCeEEEecCCcccccccHHHHHhhcC-----CcEEEEEcCccc-------cc--------------------------
Q 016486          254 SHVRAVVATLGGQQGAAARADKWQHLYA-----GFTVWLSQTEAM-------DE--------------------------  295 (388)
Q Consensus       254 ~~~~~VVStGGG~~gav~r~enr~~L~~-----g~VVyLd~~~e~-------D~--------------------------  295 (388)
                      ....+|| .|.     ....+.+..|..     +++|||++++++       ..                          
T Consensus        83 ~~~~~vi-dg~-----~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~  156 (222)
T 1zak_A           83 QENGWLL-DGY-----PRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLT  156 (222)
T ss_dssp             HHTCEEE-ESC-----CCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCB
T ss_pred             cCCcEEE-ECC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccc
Confidence            2345666 652     333344444442     689999999876       00                          


Q ss_pred             ---cCHHH----HHHHHHHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          296 ---NSAKE----EARRHVKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       296 ---~d~~e----~l~~l~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                         .+..+    ++...+.++.+   .|....++|+.+ .+   +++|+++|.+.|...+.
T Consensus       157 ~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~-~~---~~ev~~~I~~~l~~~l~  213 (222)
T 1zak_A          157 QRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGD-AT---VDAVFAKIDELLGSILE  213 (222)
T ss_dssp             CCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECS-SC---HHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECC-CC---HHHHHHHHHHHHHhhcc
Confidence               01122    33456666766   455455667663 33   56999999999987664

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.57  E-value=2e-15  Score=131.74  Aligned_cols=150  Identities=13%  Similarity=0.058  Sum_probs=91.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcce-echhHHHHHhcCchhhhhhccCcHHHH------HHHHHHHHHHhc-CC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAKQTIDSWMLAEGSDSVV------NGECDVLESLSS-HV  256 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-D~D~lIE~~~g~sI~eif~~~Ge~~FR------e~E~~vL~~L~~-~~  256 (388)
                      +++.|+|+|++||||||+|+.||+.||++++ |.|.     .|..+.++|. .|+..|+      +...+++..+.. .+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g   77 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----MGQALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAA   77 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----HHHHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----hHHHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCC
Confidence            5678999999999999999999999999999 6432     2334555555 4444343      222344444443 35


Q ss_pred             CeEEEecCCcccccccHHHHHhhcC-CcE---EEEEcCccc-------cc--cCHHHHHHHHHHHhHhccccCcEEEEcC
Q 016486          257 RAVVATLGGQQGAAARADKWQHLYA-GFT---VWLSQTEAM-------DE--NSAKEEARRHVKDGKLGYSNADVVVKLQ  323 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~L~~-g~V---VyLd~~~e~-------D~--~d~~e~l~~l~~eR~~~Y~~AD~vV~~d  323 (388)
                      ..||..+.-. ....+.+.++.++. +.+   |||++|+++       ..  +...+.+.++++++.+. ..++ +|+++
T Consensus        78 ~~vi~d~~~~-~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~~~~-~Id~~  154 (183)
T 2vli_A           78 GPLIVPVSIS-DTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-QFQT-HIDTA  154 (183)
T ss_dssp             SCEEEEECCC-CHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-GGCS-EEECT
T ss_pred             CcEEEeeecc-CHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-ccce-EeeCC
Confidence            5666554210 00123345556653 544   999999887       11  11246677777777766 4466 89988


Q ss_pred             CCCcccHHHHHHHHHHHHHHhhh
Q 016486          324 GWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       324 ~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      +.++   ++++++|.+.++..+.
T Consensus       155 ~~~~---~~~~~~I~~~l~~~~~  174 (183)
T 2vli_A          155 GLGT---QQVAEQIAAQVGLTLA  174 (183)
T ss_dssp             TCCH---HHHHHHHHHHHTCCCC
T ss_pred             CCCH---HHHHHHHHHHHHHhcC
Confidence            7665   4999999988865443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=127.37  Aligned_cols=150  Identities=14%  Similarity=0.120  Sum_probs=95.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHH----Hhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES----LSS  254 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~----L~~  254 (388)
                      +++.|+|+|++||||||+++.||+.||++++|+|+++.+..      |..+.++|.. |+..+++....++..    ...
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~   89 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMER-GDLVPSGIVLELLKEAMVASLG   89 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccc
Confidence            35789999999999999999999999999999999987765      3455666653 544444333333322    222


Q ss_pred             CCCeEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc--------cc--cC---HHHHH----HHHHHHhHh-
Q 016486          255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM--------DE--NS---AKEEA----RRHVKDGKL-  311 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~--------D~--~d---~~e~l----~~l~~eR~~-  311 (388)
                      .+..||..|     .....+.+..+.     .+++|||++|+++        +.  ..   ..+.+    ...+.++.+ 
T Consensus        90 ~~~~vi~dg-----~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~  164 (199)
T 2bwj_A           90 DTRGFLIDG-----YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPV  164 (199)
T ss_dssp             SCSCEEEET-----CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccEEEeC-----CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345666665     244444433332     3689999999887        11  01   11223    234455554 


Q ss_pred             --ccccCc--EEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          312 --GYSNAD--VVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       312 --~Y~~AD--~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                        +|..++  ++|+.+ .+   +++++++|.+.++.+
T Consensus       165 ~~~~~~~~~~~~id~~-~~---~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          165 IAYYETKTQLHKINAE-GT---PEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHHHHSEEEEEETT-SC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECC-CC---HHHHHHHHHHHHHHh
Confidence              566644  556643 33   569999999888764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.57  E-value=8.4e-15  Score=133.33  Aligned_cols=106  Identities=13%  Similarity=0.067  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhc---C
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS---H  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~---~  255 (388)
                      +++.|+|+|++||||||+|+.||+.||++++++|+++++.      .|+.+.+++.. |+..+++.+.+++.....   .
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~   82 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDLGVC   82 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999999999876      35567777765 666677777666655332   1


Q ss_pred             CCeEEEecCCcccccccHHHHH-hhc-----CCcEEEEEcCccc
Q 016486          256 VRAVVATLGGQQGAAARADKWQ-HLY-----AGFTVWLSQTEAM  293 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~-~L~-----~g~VVyLd~~~e~  293 (388)
                      +..||..|-..  .....+.+. .+.     ...+|||++++++
T Consensus        83 ~~~~i~dg~~~--~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~  124 (217)
T 3be4_A           83 VNGFVLDGFPR--TIPQAEGLAKILSEIGDSLTSVIYFEIDDSE  124 (217)
T ss_dssp             TTCEEEESCCC--SHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred             CCCEEEeCCCC--CHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            34455554221  011122222 232     1479999999887

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.55  E-value=7.1e-16  Score=139.10  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hc--Cchhhh-------hh----------ccCcH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AK--QTIDSW-------ML----------AEGSD  239 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g--~sI~ei-------f~----------~~Ge~  239 (388)
                      ++..|+|+|++||||||+|+.||+.||++++|+|.+++..      .|  ..+.++       |.          ..|+.
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~   81 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED   81 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence            4678999999999999999999999999999999998753      22  244443       31          34654


Q ss_pred             HHHHHHHHHH---------------------HHHhcCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCcccc---
Q 016486          240 SVVNGECDVL---------------------ESLSSHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAMD---  294 (388)
Q Consensus       240 ~FRe~E~~vL---------------------~~L~~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~D---  294 (388)
                      .|++++...+                     ..+...+.+|+ .|..    .    .+..+.. +++|||++|+++-   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi-~g~~----~----~~~~~~~~~~vi~l~a~~e~~~~R  152 (219)
T 2h92_A           82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVM-DGRD----I----GTVVLPDADLKVYMIASVEERAER  152 (219)
T ss_dssp             CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEE-EESS----C----CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEE-EcCC----c----cceecCCCCEEEEEECCHHHHHHH
Confidence            4433221111                     11222222333 3321    0    0123333 7899999999870   


Q ss_pred             --------cc-CHHHHHHHHHHHhH---------hccccCc-EEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          295 --------EN-SAKEEARRHVKDGK---------LGYSNAD-VVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       295 --------~~-d~~e~l~~l~~eR~---------~~Y~~AD-~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                              +. ...+.+.+++.+|.         ++|..+| ++|++++.++   ++++++|.+.++
T Consensus       153 ~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~---ee~~~~I~~~l~  216 (219)
T 2h92_A          153 RYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSI---EEVTDEILAMVS  216 (219)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCH---HHHHHHHHHHHH
T ss_pred             HHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCH---HHHHHHHHHHHh
Confidence                    11 13566778887775         7888777 9999998765   499999888775

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.55  E-value=2.5e-14  Score=125.55  Aligned_cols=151  Identities=12%  Similarity=0.035  Sum_probs=90.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHH-------HHHHhcCCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV-------LESLSSHVR  257 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~v-------L~~L~~~~~  257 (388)
                      +++.|+|+|++||||||+++.|++.||++++++|.+.+...+.     +...++++++.++...       +..+...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~   78 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG-----LGWSDREWSRRVGATAIMMLYHTAATILQSGQ   78 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH-----HCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh-----cCccchHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999999999999998776542     1222344555444221       222233345


Q ss_pred             eEEEecCCcccccccHHHHHhhcC-C----cEEEEEcCccc--------cc--cCH--------HH--HHHHHHHHhHhc
Q 016486          258 AVVATLGGQQGAAARADKWQHLYA-G----FTVWLSQTEAM--------DE--NSA--------KE--EARRHVKDGKLG  312 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~~-g----~VVyLd~~~e~--------D~--~d~--------~e--~l~~l~~eR~~~  312 (388)
                      .||..+...  .......+..|.. +    .+|||++|+++        ..  ..+        .+  .+.++++.+.++
T Consensus        79 ~vi~d~~~~--~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
T 2rhm_A           79 SLIMESNFR--VDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPL  156 (193)
T ss_dssp             CEEEEECCC--HHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCC
T ss_pred             eEEEecCCC--CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCc
Confidence            566555320  0000011222432 2    69999999887        00  010        11  244555556677


Q ss_pred             cc-cCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          313 YS-NADVVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       313 Y~-~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                      |. .++++|++++..+    +++++|++.|...+.
T Consensus       157 ~~~~~~~~Idt~~~~~----~~~~~i~~~i~~~l~  187 (193)
T 2rhm_A          157 PLGGPLLTVDTTFPEQ----IDMNAIVQWVRQHLQ  187 (193)
T ss_dssp             CCCSCEEEEECSSGGG----CCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCcc----cCHHHHHHHHHHHHH
Confidence            76 4889999998755    344555555554443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.53  E-value=1.2e-14  Score=131.87  Aligned_cols=150  Identities=11%  Similarity=0.037  Sum_probs=96.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhc----
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS----  254 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~----  254 (388)
                      +++.|+|+|++||||||+|+.||+.||++++++|+++++.      .|+.+.+++.. |+..+++.+..++.....    
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQ-GGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999999999999999875      34456666653 655566666555554332    


Q ss_pred             CCCeEEEecCCcccccccHHHHH----hhc-----CCcEEEEEcCccc-------cc-----------------------
Q 016486          255 HVRAVVATLGGQQGAAARADKWQ----HLY-----AGFTVWLSQTEAM-------DE-----------------------  295 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~----~L~-----~g~VVyLd~~~e~-------D~-----------------------  295 (388)
                      .+..||..|-     ........    .+.     ...+|||++++++       ..                       
T Consensus        82 ~~~~~i~dg~-----~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~  156 (220)
T 1aky_A           82 CKNGFILDGF-----PRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDD  156 (220)
T ss_dssp             GGSCEEEESC-----CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred             cCCCeEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccc
Confidence            1234444441     22222221    222     1479999999887       00                       


Q ss_pred             ----------cC----HHHHHHHHHHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          296 ----------NS----AKEEARRHVKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       296 ----------~d----~~e~l~~l~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                                ++    ..+++...++++.+   +|..++.++.+++..+  +++|+++|...|.
T Consensus       157 ~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~--~~~v~~~i~~~l~  218 (220)
T 1aky_A          157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQP--PATVWADILNKLG  218 (220)
T ss_dssp             TTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSC--HHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCC--HHHHHHHHHHHHh
Confidence                      01    12345555566666   6765444455554322  5699999888775

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.52  E-value=5.5e-14  Score=125.60  Aligned_cols=155  Identities=14%  Similarity=0.099  Sum_probs=94.3

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhc
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSS  254 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~  254 (388)
                      ....+++.|+|+|++||||||+++.||+.||++++|+|+++++.      .|..+.+++. .|+..|++.+..++.....
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~   93 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLN   93 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTT
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHh
Confidence            34556789999999999999999999999999999999998773      2234555554 3665666666666655332


Q ss_pred             ---CCCeEEEecCCcccccccHHHH-Hhhc-----CCcEEEEEcCccc--------cc-cCHHHH----HHHHHHHhHh-
Q 016486          255 ---HVRAVVATLGGQQGAAARADKW-QHLY-----AGFTVWLSQTEAM--------DE-NSAKEE----ARRHVKDGKL-  311 (388)
Q Consensus       255 ---~~~~VVStGGG~~gav~r~enr-~~L~-----~g~VVyLd~~~e~--------D~-~d~~e~----l~~l~~eR~~-  311 (388)
                         ....||..|...  .....+.+ ..+.     .+.+|||++|+++        +. .+..+.    +...+.++.+ 
T Consensus        94 ~~~~~~~vIldg~~~--~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~  171 (201)
T 2cdn_A           94 NPDAANGFILDGYPR--SVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPL  171 (201)
T ss_dssp             SGGGTTCEEEESCCC--SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTH
T ss_pred             cccCCCeEEEECCCC--CHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHH
Confidence               123345444210  01111111 2232     2579999999887        11 122232    3333444443 


Q ss_pred             --ccccCcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          312 --GYSNADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       312 --~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                        .|..++++|+.+ .+   +++++++|.+.|+
T Consensus       172 ~~~~~~~~~~Id~~-~~---~eev~~~I~~~l~  200 (201)
T 2cdn_A          172 LEYYRDQLKTVDAV-GT---MDEVFARALRALG  200 (201)
T ss_dssp             HHHTTTTEEEEECC-SC---HHHHHHHHHHHTT
T ss_pred             HHHhcCcEEEEeCC-CC---HHHHHHHHHHHHc
Confidence              344466777765 33   4589888877653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.50  E-value=4.4e-14  Score=128.99  Aligned_cols=105  Identities=10%  Similarity=0.092  Sum_probs=73.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHH-HHHhc--C
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS--H  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL-~~L~~--~  255 (388)
                      +++.|+|+|++||||||+++.||+.||++++|+|+++....      |..+.+++.. |+..+++.+..++ ..+..  .
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence            45789999999999999999999999999999999988754      4456666654 6655665554433 34432  3


Q ss_pred             CCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc
Q 016486          256 VRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM  293 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~  293 (388)
                      ..+|+...++   .+....++..+. .+.+|||+++.++
T Consensus        85 ~~~vid~~~~---~~~~~~~l~~~~~~~~vi~L~~~~~~  120 (227)
T 1zd8_A           85 YSWLLDGFPR---TLPQAEALDRAYQIDTVINLNVPFEV  120 (227)
T ss_dssp             SCEEEESCCC---SHHHHHHHHTTSCCCEEEEEECCHHH
T ss_pred             CCEEEeCCCC---CHHHHHHHHHhcCCCEEEEEECCHHH
Confidence            3455554444   233333444433 3889999999877

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.50  E-value=5.5e-14  Score=132.09  Aligned_cols=142  Identities=11%  Similarity=0.077  Sum_probs=97.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh---cCCcce--echhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG---LGYTPL--STKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~---LG~~fI--D~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      ++.|+|+|++||||||+|+.|++.   +|++++  |.|.+.+...+      |...++..|+..+..+++.+... ..||
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~~~~~e~~~~~~~~~~i~~~l~~-~~vI   76 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------WKEKYEEFIKKSTYRLIDSALKN-YWVI   76 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------CCGGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------hhHHHHHHHHHHHHHHHHHHhhC-CEEE
Confidence            568999999999999999999998   899998  99988755443      45567888888887777766655 5555


Q ss_pred             EecCCcccccccHHHHHhhc--------CCcEEEEEcCccc-------cc-cCHHHHHHHHHH---HhHhcc--ccCcEE
Q 016486          261 ATLGGQQGAAARADKWQHLY--------AGFTVWLSQTEAM-------DE-NSAKEEARRHVK---DGKLGY--SNADVV  319 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~--------~g~VVyLd~~~e~-------D~-~d~~e~l~~l~~---eR~~~Y--~~AD~v  319 (388)
                      ..+.     ......+..+.        ...+|||++|+++       .+ ....+.+.++++   ++.+.|  ..++++
T Consensus        77 iD~~-----~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~  151 (260)
T 3a4m_A           77 VDDT-----NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLI  151 (260)
T ss_dssp             ECSC-----CCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEE
T ss_pred             EeCC-----cccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCCCCCEEE
Confidence            5542     34444554433        1579999999887       01 112344444433   334455  347899


Q ss_pred             EEcCC-CCcccHHHHHHHHHHHHH
Q 016486          320 VKLQG-WDADHAKSVAQASLSALK  342 (388)
Q Consensus       320 V~~d~-~s~e~~eeVa~eIl~~L~  342 (388)
                      |++++ .+   +++|+++|...+.
T Consensus       152 Id~~~~~~---~~ei~~~I~~~l~  172 (260)
T 3a4m_A          152 IDTTKDID---FNEIAKKLIEKSK  172 (260)
T ss_dssp             EETTSCCC---HHHHHHHHHHHHT
T ss_pred             EeCCCCCC---HHHHHHHHHhccc
Confidence            99887 33   4588888777654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.50  E-value=5.6e-14  Score=127.07  Aligned_cols=166  Identities=12%  Similarity=0.062  Sum_probs=99.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhhccCcHHHH-------------------
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV-------------------  242 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~~~Ge~~FR-------------------  242 (388)
                      ++..|+|+|++||||||+++.|++ +|++++|+|.++++..   +..+.++++..|+..|+                   
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            356899999999999999999999 9999999999988754   22445555444433321                   


Q ss_pred             ---HHHHHHH--------HHHhc-CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCcccc-------ccCHHHHHH
Q 016486          243 ---NGECDVL--------ESLSS-HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMD-------ENSAKEEAR  303 (388)
Q Consensus       243 ---e~E~~vL--------~~L~~-~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D-------~~d~~e~l~  303 (388)
                         .++.-+.        ..+.. ...+||..+ .    .+...+|.. ..+.+|||++|+++-       .....+.+.
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~----~l~~~~~~~-~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~  155 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-P----LLVENSLYK-KANRVLVVDVSPETQLKRTMQRDDVTREHVE  155 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-T----TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-e----eeeccCccc-cCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence               0111010        11111 233444333 2    222222211 237899999998870       111245667


Q ss_pred             HHHHHhHhcc---ccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhcCCCCCCCccceeecccc
Q 016486          304 RHVKDGKLGY---SNADVVVKLQGWDADHAKSVAQASLSALKQLIQSDKKLPGKKSLYIRLGCR  364 (388)
Q Consensus       304 ~l~~eR~~~Y---~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~~~l~g~k~lyi~~g~~  364 (388)
                      +++..|.+.|   ..||++|++++ +++   +++++|.+.++.++.....   ..+.|-+.|..
T Consensus       156 ~~~~~~~~~~~~~~~ad~vId~~~-~~~---~~~~~I~~~l~~~~~~~~~---~~~~~~~~~~~  212 (218)
T 1vht_A          156 QILAAQATREARLAVADDVIDNNG-APD---AIASDVARLHAHYLQLASQ---FVSQEKPEGGS  212 (218)
T ss_dssp             HHHHHSCCHHHHHHHCSEEEECSS-CTT---SHHHHHHHHHHHHHHHHHH---TTTCCSCC---
T ss_pred             HHHHhcCChHHHHHhCCEEEECCC-CHH---HHHHHHHHHHHHHHHHHHH---HHhccCCCCCC
Confidence            7777766554   34999999987 555   8888888888776542222   23555555543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.50  E-value=1.1e-13  Score=123.96  Aligned_cols=147  Identities=11%  Similarity=0.062  Sum_probs=92.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc---CchhhhhhccCcHHHHH--------------------
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDSVVN--------------------  243 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g---~sI~eif~~~Ge~~FRe--------------------  243 (388)
                      ..|.|+|++||||||+++.||+ +|++++|+|++..+...   ..+.++++..|+..|+.                    
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            4699999999999999999998 99999999999876432   24555666556544331                    


Q ss_pred             --HHH--------HHHHHHhc-CCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc-------cccCHHHHHHH
Q 016486          244 --GEC--------DVLESLSS-HVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM-------DENSAKEEARR  304 (388)
Q Consensus       244 --~E~--------~vL~~L~~-~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~-------D~~d~~e~l~~  304 (388)
                        ++.        .+.+.+.. .+..||..+-     .+.+..  +.. .+.+|||++|+++       ......+.+.+
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~-----~l~e~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~  154 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP-----LLIENK--LTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQR  154 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT-----TTTTTT--CGGGCSEEEEEECCHHHHHHHHC-----CHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEec-----hhhhcC--cHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence              111        01111211 2334554331     222221  222 2789999999987       11123456677


Q ss_pred             HHH---HhHhccccCcEEEEcCCCCcccHH----HHHHHHHHHHHHhh
Q 016486          305 HVK---DGKLGYSNADVVVKLQGWDADHAK----SVAQASLSALKQLI  345 (388)
Q Consensus       305 l~~---eR~~~Y~~AD~vV~~d~~s~e~~e----eVa~eIl~~L~~~~  345 (388)
                      +++   .+.+.|..||++|++++ +   ++    +++++|...++.+.
T Consensus       155 r~~~q~~~~~~~~~ad~vIdn~~-~---~~~~~~~~~~~i~~~~~~~~  198 (206)
T 1jjv_A          155 IMNSQVSQQERLKWADDVINNDA-E---LAQNLPHLQQKVLELHQFYL  198 (206)
T ss_dssp             HHHHSCCHHHHHHHCSEEEECCS-C---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCChHHHHHhCCEEEECCC-C---ccccHHHHHHHHHHHHHHHH
Confidence            777   35677878999999987 4   56    78888877776554

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.49  E-value=4.2e-13  Score=117.00  Aligned_cols=150  Identities=10%  Similarity=0.027  Sum_probs=89.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHh---cC--chhhhhhccCcHHHHHHHHHH---HHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDV---LES  251 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~---g~--sI~eif~~~Ge~~FRe~E~~v---L~~  251 (388)
                      +++.|+|+|++||||||+++.||+.||     ++++++|+++.+..   |.  +..+++. ...+.++.++..+   +..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~   80 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE   80 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999     99999998876543   32  4444433 2344555555433   333


Q ss_pred             HhcCCCeEEEecCCcccccccHHH---------HHhhcCCcEEEEEcCccc--c----c------c-CH-----HHHHHH
Q 016486          252 LSSHVRAVVATLGGQQGAAARADK---------WQHLYAGFTVWLSQTEAM--D----E------N-SA-----KEEARR  304 (388)
Q Consensus       252 L~~~~~~VVStGGG~~gav~r~en---------r~~L~~g~VVyLd~~~e~--D----~------~-d~-----~e~l~~  304 (388)
                      +.. ...||.+|++   +......         ...+..+++|||++|+++  .    .      . ..     ...+.+
T Consensus        81 ~~~-~~~viid~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~  156 (192)
T 1kht_A           81 MAK-ESPVAVDTHS---TVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNR  156 (192)
T ss_dssp             HHT-TSCEEEECCS---EEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHH
T ss_pred             hcc-CCeEEEccce---eccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHH
Confidence            333 3456667765   2222211         122234789999999876  1    1      0 11     122344


Q ss_pred             HHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          305 HVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       305 l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      .+.++...|..+.+.+..+ .+- ++++++++|++.|
T Consensus       157 ~~~~~~~~~~~~~~~~i~~-~~~-~~e~~~~~i~~~i  191 (192)
T 1kht_A          157 CAAMSYGVLTGATVKIVQN-RNG-LLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHHHHHHCCEEEEEEC-CTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEeC-CCC-CHHHHHHHHHHHh
Confidence            4444555565544333222 221 1568998888765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.48  E-value=1.5e-13  Score=125.29  Aligned_cols=142  Identities=11%  Similarity=0.080  Sum_probs=92.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHH---------------HHHH-HHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV---------------VNGE-CDVL  249 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~F---------------Re~E-~~vL  249 (388)
                      ...|.|+|++||||||+|+.|++.+|++++|+|+++++.++..+.++++..|++.|               +..| ...+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l   91 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKL   91 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHH
Confidence            46799999999999999999999999999999999988887667777766666533               1111 0111


Q ss_pred             -------------HHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccccccCHHHHHHHHHHHh-----Hh
Q 016486          250 -------------ESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDG-----KL  311 (388)
Q Consensus       250 -------------~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D~~d~~e~l~~l~~eR-----~~  311 (388)
                                   ..+......||..+.     .+.+..|..+ -+.+|||++|.++       .+++++...     ++
T Consensus        92 ~~i~hP~i~~~~~~~~~~~~~~vv~d~p-----ll~e~~~~~~-~d~vi~v~a~~e~-------r~~Rli~~q~~~~~~~  158 (192)
T 2grj_A           92 ELLVHPLMKKRVQEIINKTSGLIVIEAA-----LLKRMGLDQL-CDHVITVVASRET-------ILKRNREADRRLKFQE  158 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEEECT-----TTTTTTGGGG-CSEEEEEECCHHH-------HHHHCSSHHHHHTTCT
T ss_pred             HhhhCHHHHHHHHHHHHHcCCEEEEEEe-----ceeecChHHh-CCEEEEEECCHHH-------HHHHHHHhcCCchhhh
Confidence                         112222345555442     2333333221 2789999999863       222222222     22


Q ss_pred             ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          312 GYSNADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       312 ~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      .++.||++|++++ +   ++++.+++...++.+
T Consensus       159 ~~~~AD~vI~n~~-~---~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          159 DIVPQGIVVANNS-T---LEDLEKKVEEVMKLV  187 (192)
T ss_dssp             TCCCCSEEEECSS-C---HHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEECCC-C---HHHHHHHHHHHHHHH
Confidence            2445999999885 3   458888887777655

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.48  E-value=8.1e-14  Score=145.95  Aligned_cols=153  Identities=14%  Similarity=0.095  Sum_probs=99.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC------CcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHV  256 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG------~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~  256 (388)
                      .+|..|+|+|+|||||||+++.||..|+      +.|+|+|.+++.+ ++.+.  |. .+++..++.+ ..+++.+...+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l-~~~l~--f~~~~r~~~~r~i-~~v~q~l~~~~  442 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL-SSELG--FSKAHRDVNVRRI-GFVASEITKNR  442 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT-TSSCC--CSHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh-ccccC--CCHHHHHHHHHHH-HHHHHHHHhcC
Confidence            4688999999999999999999999995      5679999987653 22222  22 2334455544 55666666667


Q ss_pred             CeEEEecCCcccccccHHHHHhhcC-C--cEEEEEcCccc----cc-----cCHHHHHHHHHHHhHhccc--cCcEEEEc
Q 016486          257 RAVVATLGGQQGAAARADKWQHLYA-G--FTVWLSQTEAM----DE-----NSAKEEARRHVKDGKLGYS--NADVVVKL  322 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~L~~-g--~VVyLd~~~e~----D~-----~d~~e~l~~l~~eR~~~Y~--~AD~vV~~  322 (388)
                      .+||+++++. ....+..+++.|.. |  ++|||+++.++    +.     ......+.+++.+|.++|.  .+|++|++
T Consensus       443 ~ivi~~~~~~-~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt  521 (552)
T 3cr8_A          443 GIAICAPIAP-YRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDT  521 (552)
T ss_dssp             CEEEECCCCC-CHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECC
T ss_pred             CEEEEecCCc-cHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEEC
Confidence            7888876541 13556777888876 7  89999999887    11     1123457788889999886  38999999


Q ss_pred             CCCCcccHHHHHHHHHHHHHHh
Q 016486          323 QGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      ++.++   ++++++|+..|+..
T Consensus       522 ~~~s~---~e~v~~Il~~L~~~  540 (552)
T 3cr8_A          522 TGLAI---DEAVQQILLKLEHE  540 (552)
T ss_dssp             SSCCH---HHHHHHHHHHHHHH
T ss_pred             CCCCH---HHHHHHHHHHHHhc
Confidence            88775   49999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.47  E-value=8.5e-14  Score=123.50  Aligned_cols=139  Identities=19%  Similarity=0.156  Sum_probs=92.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCch------h-----------------hhhhccCc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTI------D-----------------SWMLAEGS  238 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI------~-----------------eif~~~Ge  238 (388)
                      .|.|+|++||||||+|+.||+.||++++|+|.+.+...      |.+.      .                 ++| ..|+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~   82 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVL-ADGE   82 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEE-ETTE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEE-ECCe
Confidence            79999999999999999999999999999999987652      4321      1                 122 2355


Q ss_pred             HHHHHHHHHHHH---------------------HHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCccc---
Q 016486          239 DSVVNGECDVLE---------------------SLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAM---  293 (388)
Q Consensus       239 ~~FRe~E~~vL~---------------------~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~e~---  293 (388)
                      ..|+.++.+.+.                     .+.   ..||.-|-.    ..    ..++. .+++|||++|+++   
T Consensus        83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~----~~----~~~~~~~d~~i~l~a~~e~~~~  151 (208)
T 3ake_A           83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRD----MG----TAVFPEAAHKFYLTASPEVRAW  151 (208)
T ss_dssp             ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESS----CC----CCCCTTCSEEEEEECCHHHHHH
T ss_pred             eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEccc----ee----EEEecCCcEEEEEECCHHHHHH
Confidence            444332221111                     121   334444432    11    11222 3789999999987   


Q ss_pred             -----cccCHHHHHHHHHHHhHhcc----cc-Cc-EEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          294 -----DENSAKEEARRHVKDGKLGY----SN-AD-VVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       294 -----D~~d~~e~l~~l~~eR~~~Y----~~-AD-~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                           +..+ .+.+.+++.+|.+.|    .. +| ++|++++.++   ++++++|.+.++
T Consensus       152 R~~~r~~~~-~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~---ee~~~~I~~~~~  207 (208)
T 3ake_A          152 RRARERPQA-YEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTL---DEVVAWVLAHIR  207 (208)
T ss_dssp             HHHHTSSSC-HHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCH---HHHHHHHHHHHH
T ss_pred             HHHhhcccC-HHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCH---HHHHHHHHHHHh
Confidence                 1223 467888999998887    55 77 9999987765   489988887764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.46  E-value=8.5e-15  Score=134.94  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=93.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCch------h------------------hhh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTI------D------------------SWM  233 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI------~------------------eif  233 (388)
                      .++..|.|+|++||||||+++.||+.||++++|+|+++...      .|.++      .                  +++
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~   93 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF   93 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence            35678999999999999999999999999999999998753      34331      1                  122


Q ss_pred             hccCcHHHHHHHH---------------------HHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-CCcEEEEEcCc
Q 016486          234 LAEGSDSVVNGEC---------------------DVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTE  291 (388)
Q Consensus       234 ~~~Ge~~FRe~E~---------------------~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-~g~VVyLd~~~  291 (388)
                       ..|+..+|.++.                     +....+...+.+|+ .|-.    ..    ...+. .+++|||++++
T Consensus        94 -~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~-~g~~----~~----~~~l~~~d~vi~L~a~~  163 (236)
T 1q3t_A           94 -VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM-DGRD----IG----TVVLPQAELKIFLVASV  163 (236)
T ss_dssp             -ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEE-ECSS----CS----SSSGGGCSEEEEEECCH
T ss_pred             -ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEE-ECCc----ch----hhhccCCCEEEEEECCH
Confidence             245532221111                     11112223222333 3321    00    11333 38899999999


Q ss_pred             cc--c---------c-cCHHHHHHHHHHHhH---------hccccCc-EEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          292 AM--D---------E-NSAKEEARRHVKDGK---------LGYSNAD-VVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       292 e~--D---------~-~d~~e~l~~l~~eR~---------~~Y~~AD-~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      ++  .         + ....+.+.+++.+|.         +.|..+| ++|++++.++   ++++++|...++.
T Consensus       164 e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~---eev~~~I~~~l~~  234 (236)
T 1q3t_A          164 DERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNI---QEVVEKIKAEAEK  234 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCH---HHHHHHHHHHHHh
Confidence            87  0         1 223566777777763         5676666 8899887665   4999999888764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.46  E-value=2.7e-14  Score=127.34  Aligned_cols=148  Identities=13%  Similarity=0.040  Sum_probs=91.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc---CchhhhhhccCcHHHH---------------------
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDSVV---------------------  242 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g---~sI~eif~~~Ge~~FR---------------------  242 (388)
                      +.|.|+|++||||||+++.||+ +|++++|+|+++++...   ..+.++++..|+..|+                     
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 99999999999887552   2344555444443321                     


Q ss_pred             -HHHH--------HHHHHHhc-CC-CeEEEecCCcccccccHHHHHhhcCCcEEEEEcCcccc------ccCHHHHHHHH
Q 016486          243 -NGEC--------DVLESLSS-HV-RAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMD------ENSAKEEARRH  305 (388)
Q Consensus       243 -e~E~--------~vL~~L~~-~~-~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D------~~d~~e~l~~l  305 (388)
                       .++.        .+.+.+.. .. ..||..|..     +.+.++..+ .+.+|||++|+++-      .....+.+.++
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~-----l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~  154 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASL-----LVEKGTYKN-YDKLIVVYAPYEVCKERAIKRGMSEEDFERR  154 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSC-----STTTTCGGG-SSEEEEECCCHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccc-----cccCCchhh-CCEEEEEECCHHHHHHHHHHcCCCHHHHHHH
Confidence             1111        01111111 22 566666632     333333322 47899999998761      11123456666


Q ss_pred             HHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          306 VKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       306 ~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +..+.+   .+..||++|+++ .+   +++++++|...++.+.
T Consensus       155 ~~~~~~~~~~~~~ad~vId~~-~~---~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          155 WKKQMPIEEKVKYADYVIDNS-GS---IEETYKQVKKVYEELT  193 (204)
T ss_dssp             HTTSCCHHHHGGGCSEECCCS-SC---HHHHHHHHHHHHHTTC
T ss_pred             HHhCCChhHHHhcCCEEEECC-CC---HHHHHHHHHHHHHHHh
Confidence            666544   234489888776 33   5589998888876543

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.44  E-value=1.1e-12  Score=116.84  Aligned_cols=155  Identities=12%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCch----hhhhhccCcHHHHHHHHHHHHH-----H
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTI----DSWMLAEGSDSVVNGECDVLES-----L  252 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI----~eif~~~Ge~~FRe~E~~vL~~-----L  252 (388)
                      +.+.|+|+|++||||||+++.||+.+|++++|+|+++++..   +..+    .+++. .|+..+++.+..++.+     +
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l   92 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV   92 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence            34679999999999999999999999999999999988753   3333    33443 3554444444433332     2


Q ss_pred             hcCCCeEEEecCCcccccccHHHHH-hhc-CCcEEEEEcCccc--------cc-----cCHHHHHH----HHHHHhHhc-
Q 016486          253 SSHVRAVVATLGGQQGAAARADKWQ-HLY-AGFTVWLSQTEAM--------DE-----NSAKEEAR----RHVKDGKLG-  312 (388)
Q Consensus       253 ~~~~~~VVStGGG~~gav~r~enr~-~L~-~g~VVyLd~~~e~--------D~-----~d~~e~l~----~l~~eR~~~-  312 (388)
                      ......+|-.|-..  ........+ .+. .+++|||++|+++        +.     .+..+.+.    ..++.+.+. 
T Consensus        93 ~~g~~~~i~dg~~~--~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~  170 (203)
T 1ukz_A           93 KANKHKFLIDGFPR--KMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI  170 (203)
T ss_dssp             HTTCCEEEEETCCC--SHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred             ccCCCeEEEeCCCC--CHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence            22223444444220  011111111 233 3789999999987        10     12233333    334445554 


Q ss_pred             --cccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          313 --YSNADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       313 --Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                        |..++.++.+++..+  +++++++|.+.|+..
T Consensus       171 ~~~~~~~~vi~id~~~~--~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          171 EYFETKSKVVRVRCDRS--VEDVYKDVQDAIRDS  202 (203)
T ss_dssp             HHHHTTTCEEEEECSSC--HHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcEEEEECCCC--HHHHHHHHHHHHhcc
Confidence              455776543433222  569999999888753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.44  E-value=6.4e-14  Score=123.81  Aligned_cols=148  Identities=18%  Similarity=0.125  Sum_probs=90.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh-cCchhhhhhcc------Cc---HHHH-----------H
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAE------GS---DSVV-----------N  243 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~-g~sI~eif~~~------Ge---~~FR-----------e  243 (388)
                      +...|.|+|++||||||+|+.||+. |++++|+|+++++.. |.+ .++++..      |.   ..+.           .
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~   84 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   84 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence            4568999999999999999999999 999999999987766 533 2332221      11   1111           1


Q ss_pred             HHH--------HHHHHHhcC-CCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHHHHHHHH
Q 016486          244 GEC--------DVLESLSSH-VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKEEARRHV  306 (388)
Q Consensus       244 ~E~--------~vL~~L~~~-~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~~l~  306 (388)
                      ++.        ..+...... .++||..+.     .+...+|.. ..+.+|||+++++.        +..+ .+.+.+++
T Consensus        85 l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-----~l~~~~~~~-~~d~~i~l~~~~e~~~~R~~~R~~~~-~~~~~~~i  157 (203)
T 1uf9_A           85 LEAVVHPEVRRLLMEELSRLEAPLVFLEIP-----LLFEKGWEG-RLHGTLLVAAPLEERVRRVMARSGLS-REEVLARE  157 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCSEEEEECT-----TTTTTTCGG-GSSEEEEECCCHHHHHHHHHTTTCCT-THHHHHHH
T ss_pred             HHHHhChHHHHHHHHHhhhcCCCEEEEEec-----ceeccCchh-hCCEEEEEECCHHHHHHHHHHcCCCC-HHHHHHHH
Confidence            111        111111122 456776642     233332221 13789999999876        1112 34455666


Q ss_pred             HHhHhcc---ccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          307 KDGKLGY---SNADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       307 ~eR~~~Y---~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      ..+.+.|   ..||++|++++ +   +++++++|...++.+.
T Consensus       158 ~~~~~~~~~~~~ad~vId~~~-~---~~~~~~~i~~~~~~~~  195 (203)
T 1uf9_A          158 RAQMPEEEKRKRATWVLENTG-S---LEDLERALKAVLAELT  195 (203)
T ss_dssp             TTSCCHHHHHHHCSEEECCSS-H---HHHHHHHHHHHHHSCC
T ss_pred             HHCCChhHHHHhCCEEEECCC-C---HHHHHHHHHHHHHHHH
Confidence            6555443   34898887775 3   4589988888887543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.42  E-value=9.4e-13  Score=121.00  Aligned_cols=106  Identities=15%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcC---
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH---  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~---  255 (388)
                      +++.|+|+|++||||||+|+.||+.||++++++|+++++.      .|+.+.+++.. |+..+++.+.+++......   
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA-GKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHC-CCcCCHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999999998874      34456666643 5555666666666554322   


Q ss_pred             CCeEEEecCCcccccccHHHH-Hhhc-----CCcEEEEEcCccc
Q 016486          256 VRAVVATLGGQQGAAARADKW-QHLY-----AGFTVWLSQTEAM  293 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr-~~L~-----~g~VVyLd~~~e~  293 (388)
                      ...||..|-..  .....+.+ +.+.     .+.+|||+++.++
T Consensus        94 ~~g~ildg~~~--~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~  135 (233)
T 1ak2_A           94 KNGFLLDGFPR--TVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL  135 (233)
T ss_dssp             TTCEEEESCCC--SHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred             cCcEEEeCCCC--CHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            23355444210  00000111 1221     3689999999877

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.42  E-value=5.5e-13  Score=116.58  Aligned_cols=150  Identities=15%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhhhccCcH------HHHHHHH-----HHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWMLAEGSD------SVVNGEC-----DVLESL  252 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif~~~Ge~------~FRe~E~-----~vL~~L  252 (388)
                      +.|+|+|++||||||+++.|++.|   |++++++|.......|..+.+++.. |+-      .|...+.     +++...
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLT-EELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999   9999999864333333344455543 321      1212221     122233


Q ss_pred             hcCCCeEEEe----------cCCcccccccHHHHH----hh----cCCcEEEEEcCccc--------cccC---HHHHHH
Q 016486          253 SSHVRAVVAT----------LGGQQGAAARADKWQ----HL----YAGFTVWLSQTEAM--------DENS---AKEEAR  303 (388)
Q Consensus       253 ~~~~~~VVSt----------GGG~~gav~r~enr~----~L----~~g~VVyLd~~~e~--------D~~d---~~e~l~  303 (388)
                      ...+..||+.          |++.   ........    .+    ..+.+|||++|+++        +..+   ..+++.
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~~~  156 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGK---GLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVR  156 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTT---CCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccC---CCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHHHH
Confidence            3345667765          5442   33322221    12    23789999999987        1111   122222


Q ss_pred             HHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          304 RHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       304 ~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +.|.+....| ...++|++++ +   +++++++|.+.++.++
T Consensus       157 ~~~~~~~~~~-~~~~~Id~~~-~---~~~~~~~i~~~l~~~l  193 (195)
T 2pbr_A          157 KGFLELAKEE-ENVVVIDASG-E---EEEVFKEILRALSGVL  193 (195)
T ss_dssp             HHHHHHHHHS-TTEEEEETTS-C---HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhC-CCEEEEECCC-C---HHHHHHHHHHHHHHHh
Confidence            2333333333 2337777743 3   5699999988887653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.42  E-value=2.8e-13  Score=122.48  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=93.7

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC------CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG------YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSH  255 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG------~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~  255 (388)
                      ...+++.|+|+|++||||||+++.|++.|+      +.++|+|.+.+...+. . .++...++..|+.++. ++..+...
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~-~-~~~~~~r~~~~~~~~~-~~~~~l~~   97 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKD-L-GFSEADRNENIRRIAE-VAKLFADS   97 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTT-C-CSSHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccc-c-CCCHHHHHHHHHHHHH-HHHHHHHC
Confidence            344678999999999999999999999987      8888988875432211 1 1233556667776654 34344444


Q ss_pred             CCeEEEecCCcccccccHHHHHhhc-------C-------CcEEEEEcCccc--c--ccCHHHHHHH----HHHHhHhcc
Q 016486          256 VRAVVATLGGQQGAAARADKWQHLY-------A-------GFTVWLSQTEAM--D--ENSAKEEARR----HVKDGKLGY  313 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~L~-------~-------g~VVyLd~~~e~--D--~~d~~e~l~~----l~~eR~~~Y  313 (388)
                      +..||++. +   .. ...+++.++       .       ..+|||++|+++  .  ......+.++    +++.+...|
T Consensus        98 g~~VI~d~-~---~~-~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~~~y  172 (211)
T 1m7g_A           98 NSIAITSF-I---SP-YRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPY  172 (211)
T ss_dssp             TCEEEEEC-C---CC-CHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCC
T ss_pred             CCEEEEec-C---Cc-cHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhhhhc
Confidence            56777773 2   12 223333322       1       479999999875  1  1111111111    112334456


Q ss_pred             c---cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          314 S---NADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       314 ~---~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      .   .++++|++++.++   ++++++|+..++.
T Consensus       173 ~~~~~~~~~IDt~~~s~---eev~~~I~~~l~~  202 (211)
T 1m7g_A          173 EAPANPEVHVKNYELPV---QDAVKQIIDYLDT  202 (211)
T ss_dssp             CCCSSCSEEEECSSSCH---HHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEECCCCCH---HHHHHHHHHHHHH
Confidence            5   3689999988665   4999999988875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.41  E-value=6e-13  Score=141.41  Aligned_cols=151  Identities=14%  Similarity=0.129  Sum_probs=101.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCCeE
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRAV  259 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~~V  259 (388)
                      ++++.|+|+|++||||||+|+.|+++|   |++++++|..+.+ .++.....|. +.+++.||++. ++++.+...+.+|
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR-~~L~~~~~fs~~dree~~r~i~-eva~~~l~~G~iV  127 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR-QGLNKNLGFSPEDREENVRRIA-EVAKLFADAGLVC  127 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT-TTTTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCEE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh-hccCccccCChhhhHHHHHHHH-HHHHHHHhCCCEE
Confidence            367889999999999999999999999   9999998755443 2444444565 56788888874 3555555545555


Q ss_pred             EEecCCcccccc---cHHHHHhhcC-C---cEEEEEcCccc----cccCHHH----HHHHHHHHhHhccc---cCcEEEE
Q 016486          260 VATLGGQQGAAA---RADKWQHLYA-G---FTVWLSQTEAM----DENSAKE----EARRHVKDGKLGYS---NADVVVK  321 (388)
Q Consensus       260 VStGGG~~gav~---r~enr~~L~~-g---~VVyLd~~~e~----D~~d~~e----~l~~l~~eR~~~Y~---~AD~vV~  321 (388)
                      |+ +++   .+.   ++.+++.+.. +   ++|||++|+++    +......    .....+..|...|.   .+|++|+
T Consensus       128 I~-d~~---s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~~~~~~~Ye~p~~~dlvID  203 (630)
T 1x6v_B          128 IT-SFI---SPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLK  203 (630)
T ss_dssp             EE-ECC---CCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----CBTTTBCCCCCSSCSEEEE
T ss_pred             EE-eCc---hhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHHHHhhhhhcccCCCcEEEE
Confidence            54 333   233   5566666654 3   49999999976    1110000    00112344667786   3889999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHH
Q 016486          322 LQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +++.++   ++++++|++.|+.
T Consensus       204 ts~~s~---eevv~~Il~~L~~  222 (630)
T 1x6v_B          204 TDSCDV---NDCVQQVVELLQE  222 (630)
T ss_dssp             TTSSCH---HHHHHHHHHHHHH
T ss_pred             CCCCCH---HHHHHHHHHHHHh
Confidence            988765   4999999998875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.40  E-value=4.7e-13  Score=118.58  Aligned_cols=154  Identities=8%  Similarity=0.058  Sum_probs=90.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-CCcceechhHH-HHHhcCchhhhhhccCc---HHH-------HHHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL-ETFAKQTIDSWMLAEGS---DSV-------VNGECDVLESL  252 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lI-E~~~g~sI~eif~~~Ge---~~F-------Re~E~~vL~~L  252 (388)
                      +++.|+|+|++||||||+++.|++.| |+++++++... ....|..+.++|...+.   ...       |....+.+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~   82 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQ   82 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999 69999987654 33345556666654321   000       00001122333


Q ss_pred             hcCCCeEEE-----------ecCCcccccccHHHHHhh-----cCCcEEEEEcCccc--c-----c-c--CHHHHHHHHH
Q 016486          253 SSHVRAVVA-----------TLGGQQGAAARADKWQHL-----YAGFTVWLSQTEAM--D-----E-N--SAKEEARRHV  306 (388)
Q Consensus       253 ~~~~~~VVS-----------tGGG~~gav~r~enr~~L-----~~g~VVyLd~~~e~--D-----~-~--d~~e~l~~l~  306 (388)
                      ...+..||+           +|+|   ..  .+....+     ..+.+|||++|+++  .     . +  ...+++...|
T Consensus        83 l~~~~~vi~Dr~~~s~~~~~~~~g---~~--~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl~~~y  157 (204)
T 2v54_A           83 LEQGITLIVDRYAFSGVAYAAAKG---AS--MTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKVLQEY  157 (204)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHHTT---CC--HHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHHHHHH
T ss_pred             HHCCCEEEEECchhhHHHHHHccC---CC--HHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHHHHHH
Confidence            334566774           3344   11  2222222     23789999999876  1     1 1  1233444445


Q ss_pred             HHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          307 KDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       307 ~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      .+....|....++|+.+ .+   +++++++|.+.++..+..
T Consensus       158 ~~~~~~~~~~~~~Id~~-~~---~~~v~~~i~~~l~~~l~~  194 (204)
T 2v54_A          158 KKMIEEGDIHWQIISSE-FE---EDVKKELIKNIVIEAIHT  194 (204)
T ss_dssp             HHHHTTCSSCEEEECTT-SC---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEEECC-CC---HHHHHHHHHHHHHHHHhh
Confidence            54444443223556553 33   569999999999887653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.38  E-value=3.8e-12  Score=119.18  Aligned_cols=39  Identities=18%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~  223 (388)
                      ++..|.|+|++||||||+++.||++||+.++|+|.++..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            567899999999999999999999999999999999844

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.37  E-value=2.8e-12  Score=112.47  Aligned_cols=146  Identities=16%  Similarity=0.130  Sum_probs=86.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCcceechhHHHHHhcCchhhhh-hccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~D~lIE~~~g~sI~eif-~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      +|+.|+|+|++||||||+++.|++.|   |++++++|...... .......+ ...++..|++++.. ...+... ..++
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~   80 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-GLNKNLGFSPEDREENVRRIAEV-AKLFADA-GLVC   80 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHHHHHHH-HHHHHHT-TCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH-HHhhccccccccHHHHHHHHHHH-HHHHHHC-CCEE
Confidence            57899999999999999999999998   99999766443321 11111112 23456677776642 2222232 3344


Q ss_pred             EecCCcccccc---cHHHHHhhc-CC---cEEEEEcCccccccCHHHHHHH-HHH-HhH----------hccc---cCcE
Q 016486          261 ATLGGQQGAAA---RADKWQHLY-AG---FTVWLSQTEAMDENSAKEEARR-HVK-DGK----------LGYS---NADV  318 (388)
Q Consensus       261 StGGG~~gav~---r~enr~~L~-~g---~VVyLd~~~e~D~~d~~e~l~~-l~~-eR~----------~~Y~---~AD~  318 (388)
                      .++ +.  .+.   +..+++.+. .+   .+|||++|+++    ..+++.+ .+. .|.          +.|+   .||+
T Consensus        81 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~----~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~  153 (179)
T 2pez_A           81 ITS-FI--SPYTQDRNNARQIHEGASLPFFEVFVDAPLHV----CEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPEL  153 (179)
T ss_dssp             EEE-CC--CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHH----HHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSE
T ss_pred             EEe-cC--CcchHHHHHHHHHhhccCCCeEEEEEeCCHHH----HHHHHhhhhHHHHhcccccccccCCccccCCCCCcE
Confidence            333 42  122   344444444 24   68999999865    1111100 011 122          2343   2789


Q ss_pred             EEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          319 VVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       319 vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +|++++.++   ++++++|...++.
T Consensus       154 vid~~~~~~---~~~~~~i~~~l~~  175 (179)
T 2pez_A          154 VLKTDSCDV---NDCVQQVVELLQE  175 (179)
T ss_dssp             EEETTTSCH---HHHHHHHHHHHHH
T ss_pred             EEECCCCCH---HHHHHHHHHHHHH
Confidence            998887765   4999999888764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.36  E-value=2.7e-12  Score=117.57  Aligned_cols=101  Identities=6%  Similarity=-0.015  Sum_probs=67.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHHHhcC--CCe
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH--VRA  258 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~--~~~  258 (388)
                      +.|+|+|++||||||+++.||+.||++++++|+++++.      .|..+.+++. .|+..+++....++......  +..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence            46999999999999999999999999999999998876      2334455554 35544455555554443322  445


Q ss_pred             EEEecCCcccccccHHHHHhh---------cCCcEEEEEcCccc
Q 016486          259 VVATLGGQQGAAARADKWQHL---------YAGFTVWLSQTEAM  293 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L---------~~g~VVyLd~~~e~  293 (388)
                      ||..|-.     ........|         ....+|||++|+++
T Consensus        80 vIlDg~~-----~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~  118 (223)
T 2xb4_A           80 WLLDGFP-----RNTVQAQKLFEALQEKGMKINFVIEILLPREV  118 (223)
T ss_dssp             EEEESCC-----CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred             EEEeCCc-----CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            6665522     221112222         12579999999987

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.36  E-value=3.8e-12  Score=114.15  Aligned_cols=146  Identities=13%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---CCc--ceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCe
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA  258 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~  258 (388)
                      .++..|+|+|++||||||+++.||..|   |..  ++|+|.+...... .+. +..+.....++.+ ..+...+...+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~   99 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR-DLS-FKAEDRAENIRRV-GEVAKLFADAGII   99 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT-TCC-SSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc-ccC-cChHHHHHHHHHH-HHHHHHHHhCCce
Confidence            357899999999999999999999999   666  9999987542211 110 1111111222222 2344444444555


Q ss_pred             EEEecCCcccccccHHHHHhhc----C--CcEEEEEcCccccccCHHHHH-HHHH-HHhH----------hccc---cCc
Q 016486          259 VVATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAMDENSAKEEA-RRHV-KDGK----------LGYS---NAD  317 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L~----~--g~VVyLd~~~e~D~~d~~e~l-~~l~-~eR~----------~~Y~---~AD  317 (388)
                      ||++..+     ..+..++.++    .  .++|||++++++    ..++. ..++ ..|.          ..|.   .++
T Consensus       100 vi~~~~~-----~~~~~r~~~~~~~~~~~~~~v~L~a~~e~----~~~R~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~  170 (200)
T 3uie_A          100 CIASLIS-----PYRTDRDACRSLLPEGDFVEVFMDVPLSV----CEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCE  170 (200)
T ss_dssp             EEEECCC-----CCHHHHHHHHHTSCTTSEEEEEECCCHHH----HHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCS
T ss_pred             EEEecCC-----chHHHHHHHHHhcCCCCEEEEEEeCCHHH----HHHhcccchHHHHhcCCCCCCCCCCCcCcCCCCCC
Confidence            5554432     2344454443    2  246999999864    00110 0011 1111          2354   377


Q ss_pred             EEEEcCC-CCcccHHHHHHHHHHHHHHh
Q 016486          318 VVVKLQG-WDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       318 ~vV~~d~-~s~e~~eeVa~eIl~~L~~~  344 (388)
                      ++|++++ .++   ++++++|++.|+..
T Consensus       171 ~~idt~~~~~~---~e~v~~i~~~l~~~  195 (200)
T 3uie_A          171 ISLGREGGTSP---IEMAEKVVGYLDNK  195 (200)
T ss_dssp             EEECCSSCCCH---HHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCH---HHHHHHHHHHHHHc
Confidence            9999988 565   49999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.36  E-value=4.4e-13  Score=118.33  Aligned_cols=153  Identities=14%  Similarity=0.037  Sum_probs=86.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVR  257 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~  257 (388)
                      .++..|+|+|++||||||+++.||+.|+     +.++|+|.+.+...+.   ..|. .+.+..++.+ ..+.+.+...+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~r~~~~~~~-~~~~~~~~~~g~   86 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEG---AGFTREERLRHLKRI-AWIARLLARNGV   86 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTT---CCCCHHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhc---cCCChhhHHHHHHHH-HHHHHHHHhCCC
Confidence            3678899999999999999999999986     4678998875433221   0111 1111122211 112223333344


Q ss_pred             eEEEecCCcccccccHHHHHhhc----CCcEEEEEcCcccc----ccCHHH-----HHHHHHHHhHhccc---cCcEEEE
Q 016486          258 AVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMD----ENSAKE-----EARRHVKDGKLGYS---NADVVVK  321 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~----~g~VVyLd~~~e~D----~~d~~e-----~l~~l~~eR~~~Y~---~AD~vV~  321 (388)
                      .||+ +++......++..+..+.    .+.+|||++|+++-    .....+     .+..+...|.. |.   .++++|+
T Consensus        87 ~vi~-d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~Id  164 (186)
T 2yvu_A           87 IVIC-SFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDP-YEPPENPQLVLD  164 (186)
T ss_dssp             EEEE-ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSC-CCCCSSCSEEEE
T ss_pred             EEEE-eCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhc-ccCCCCCcEEEE
Confidence            4444 433100122344455444    25799999998750    000000     00111223333 55   3789999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHHhh
Q 016486          322 LQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +++.++   ++++++|+..|+.++
T Consensus       165 ~~~~~~---~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          165 TESNTI---EHNVSYLYSLVKAVI  185 (186)
T ss_dssp             TTTSCH---HHHHHHHHHHHHHHC
T ss_pred             CCCCCH---HHHHHHHHHHHHHhc
Confidence            987665   499999999987653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.34  E-value=6.4e-12  Score=109.43  Aligned_cols=148  Identities=9%  Similarity=-0.013  Sum_probs=84.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhc-Cchh---hhhhccC----cHHHHHHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAK-QTID---SWMLAEG----SDSVVNGECDVLESLS  253 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g-~sI~---eif~~~G----e~~FRe~E~~vL~~L~  253 (388)
                      +.|+|+|++||||||+++.|+++|+     +.++++|+++.+..+ ..+.   +-|....    ...+..+... +....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l   80 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEA   80 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH-HHHHh
Confidence            4699999999999999999999998     899999998876652 2111   0000000    0111111111 22222


Q ss_pred             --cCCCeEEEecCCccccccc---------HHHHHhhcCCcEEEEEcCccc-------c--cc--C---H-----HHHHH
Q 016486          254 --SHVRAVVATLGGQQGAAAR---------ADKWQHLYAGFTVWLSQTEAM-------D--EN--S---A-----KEEAR  303 (388)
Q Consensus       254 --~~~~~VVStGGG~~gav~r---------~enr~~L~~g~VVyLd~~~e~-------D--~~--d---~-----~e~l~  303 (388)
                        ..+..||+.|.+   ....         .+....+..+.+|||++|+++       +  ..  +   .     .+.+.
T Consensus        81 ~~~~~~~vi~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~  157 (194)
T 1nks_A           81 RAGGEGYLFIDTHA---VIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFA  157 (194)
T ss_dssp             HHTCSSEEEEEECS---EEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHH
T ss_pred             hccCCCEEEECCch---hhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHH
Confidence              345678877753   1111         222233345889999999876       2  11  1   1     12244


Q ss_pred             HHHHHhHhccccCcEEEE-cCCCCcccHHHHHHHHHHHH
Q 016486          304 RHVKDGKLGYSNADVVVK-LQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       304 ~l~~eR~~~Y~~AD~vV~-~d~~s~e~~eeVa~eIl~~L  341 (388)
                      +.+.++...|..+++++. ....+   +++++++|.+.|
T Consensus       158 ~~~~~~~~~~~~~~~~~I~d~~~~---~e~v~~~I~~~l  193 (194)
T 1nks_A          158 RYAATASAVLAGSTVKVIVNVEGD---PSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHTCEEEEEECCSSC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEEeCCCCC---HHHHHHHHHHHh
Confidence            555666555644453332 22233   568998888765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.34  E-value=3.6e-12  Score=112.21  Aligned_cols=146  Identities=10%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCch-hhhhhccCcHHH------HHHHHHHHHHHhcCCCeE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTI-DSWMLAEGSDSV------VNGECDVLESLSSHVRAV  259 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI-~eif~~~Ge~~F------Re~E~~vL~~L~~~~~~V  259 (388)
                      +.|+|+|++||||||+++.||+.|++.+++-..     .|..+ ..++...+...|      ...+.+.+......+. |
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-v   74 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-----EENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLEN-I   74 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-----GGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------C-E
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-----cccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCC-E
Confidence            469999999999999999999999998875211     12221 111111111111      1111111222222233 4


Q ss_pred             EEec--------------CCcccccccHH----------HHHhh-------c-CCcEEEEEcCccc------c-c-----
Q 016486          260 VATL--------------GGQQGAAARAD----------KWQHL-------Y-AGFTVWLSQTEAM------D-E-----  295 (388)
Q Consensus       260 VStG--------------GG~~gav~r~e----------nr~~L-------~-~g~VVyLd~~~e~------D-~-----  295 (388)
                      |...              +|   .+...+          ....|       . .+.+|||++|+++      . +     
T Consensus        75 i~d~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~  151 (205)
T 2jaq_A           75 IFDRTLLEDPIFMKVNYDLN---NVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEEL  151 (205)
T ss_dssp             EEESCTTTHHHHHHHHHHTT---SSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHH
T ss_pred             EEEeccchhHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhh
Confidence            4432              22   122221          11222       2 3689999999987      1 1     


Q ss_pred             ---cCHHHHHHHHHHHhHhccc-c-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          296 ---NSAKEEARRHVKDGKLGYS-N-ADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       296 ---~d~~e~l~~l~~eR~~~Y~-~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                         ....+.+.+.+.++.+.|. . ++++|++++ +   +++++++|...++.+.
T Consensus       152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~-~---~~~v~~~I~~~l~~~~  202 (205)
T 2jaq_A          152 LIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL-D---VKTQIELIMNKLNSIK  202 (205)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS-C---HHHHHHHHHHHHHHC-
T ss_pred             cCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC-C---HHHHHHHHHHHHHHhc
Confidence               0223456777777778885 3 889999887 4   5699999998887543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.33  E-value=8.4e-12  Score=112.12  Aligned_cols=101  Identities=13%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHH-Hhc--CCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLES-LSS--HVR  257 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~-L~~--~~~  257 (388)
                      ++|+|+|++||||||+++.||+.+|++++|+|+++.+...      ..+.+++.. |.....++...++.. +..  ...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence            4699999999999999999999999999999999887432      234444433 322222222333332 221  123


Q ss_pred             eEEEecCCcccccccHHHHHhh----c-----CCcEEEEEcCccc
Q 016486          258 AVVATLGGQQGAAARADKWQHL----Y-----AGFTVWLSQTEAM  293 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L----~-----~g~VVyLd~~~e~  293 (388)
                      .||..|-     .........+    .     ...+|||++|.++
T Consensus        80 ~~ildg~-----p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~  119 (216)
T 3fb4_A           80 GFLLDGF-----PRTVAQADALDSLLTDLGKKLDYVLNIKVEQEE  119 (216)
T ss_dssp             CEEEESC-----CCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHH
T ss_pred             cEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            4444442     2222222222    1     2579999999876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.33  E-value=1.2e-11  Score=111.35  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=35.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      ++|+|+|++||||||+++.||+.+|++++|+|+++.+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~   38 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAA   38 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            46999999999999999999999999999999998874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.33  E-value=6.8e-13  Score=123.50  Aligned_cols=150  Identities=11%  Similarity=0.026  Sum_probs=87.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc----------ceechhHHHHHhcCchh-----h-hhhc---cCcHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKELLETFAKQTID-----S-WMLA---EGSDSVVNGE  245 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~----------fID~D~lIE~~~g~sI~-----e-if~~---~Ge~~FRe~E  245 (388)
                      +...|.|+|++||||||+|+.||+.||++          ++|+|+++.......+.     + .|..   ...+.++   
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~---   97 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELIL---   97 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHH---
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHH---
Confidence            34579999999999999999999999998          69999987521111111     0 1111   1111222   


Q ss_pred             HHHHHHHhc------------------------CCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------
Q 016486          246 CDVLESLSS------------------------HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------  293 (388)
Q Consensus       246 ~~vL~~L~~------------------------~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------  293 (388)
                       +.|+.+..                        ....||..|..   +...+..+..  .+.+|||+++.++        
T Consensus        98 -~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~---~~~~~~~~~~--~d~vi~l~~~~e~~~~R~~~R  171 (252)
T 1uj2_A           98 -KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL---AFYSQEVRDL--FQMKLFVDTDADTRLSRRVLR  171 (252)
T ss_dssp             -HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT---TTSSHHHHHH--CSEEEEEECCHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec---cccCHHHHHh--cCeeEEEeCCHHHHHHHHHHH
Confidence             33444421                        23578888854   1224433222  2789999999987        


Q ss_pred             cc---cCHHHHHHHHHHHhH---------hccccCcEEEE--cCCCCcccHHHHHHHHHHHHHHhh
Q 016486          294 DE---NSAKEEARRHVKDGK---------LGYSNADVVVK--LQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       294 D~---~d~~e~l~~l~~eR~---------~~Y~~AD~vV~--~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +.   ....+.+.+.+..|.         +.+..||++|.  +++.  .++++++++|...+....
T Consensus       172 ~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~--~s~e~v~~~I~~~l~~~~  235 (252)
T 1uj2_A          172 DISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNL--VAINLIVQHIQDILNGGP  235 (252)
T ss_dssp             HHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCH--HHHHHHHHHHHHHHHC--
T ss_pred             HHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCCh--hHHHHHHHHHHHHHccch
Confidence            10   122445555555433         34555999882  2321  125688888877776543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.32  E-value=4e-12  Score=109.82  Aligned_cols=102  Identities=11%  Similarity=0.078  Sum_probs=71.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHH-hcCCcceechhHHHHHhcCchh--hhhhccCcHHHHHHHHHHHHHHh---cCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAV-GLGYTPLSTKELLETFAKQTID--SWMLAEGSDSVVNGECDVLESLS---SHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk-~LG~~fID~D~lIE~~~g~sI~--eif~~~Ge~~FRe~E~~vL~~L~---~~~~~VV  260 (388)
                      +.|+|+|++||||||+++.|++ .+|+.++++|.+.+...+++..  ..+...++..+++...++++...   ..+..||
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi   82 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeEE
Confidence            5799999999999999999999 7999999999988877765332  12344456667666666666665   4456666


Q ss_pred             EecCCcccccccHHHHHhh----cC-C---cEEEEEcCccc
Q 016486          261 ATLGGQQGAAARADKWQHL----YA-G---FTVWLSQTEAM  293 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L----~~-g---~VVyLd~~~e~  293 (388)
                      ..+..     .....++.+    .. +   .+|||++|.++
T Consensus        83 ~d~~~-----~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~  118 (181)
T 1ly1_A           83 ISDTN-----LNPERRLAWETFAKEYGWKVEHKVFDVPWTE  118 (181)
T ss_dssp             ECSCC-----CSHHHHHHHHHHHHHHTCEEEEEECCCCHHH
T ss_pred             EeCCC-----CCHHHHHHHHHHHHHcCCCEEEEEEeCCHHH
Confidence            65533     333333322    21 3   59999998876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.32  E-value=1.6e-12  Score=128.98  Aligned_cols=106  Identities=8%  Similarity=0.071  Sum_probs=85.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcC-----chhhh-hhccCcHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSW-MLAEGSDSVVNG  244 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~-----sI~ei-f~~~Ge~~FRe~  244 (388)
                      ++..|+|+|++||||||||..||++++..+||+|.+              +++..|.     ++.++ ++..+...|++.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            345899999999999999999999999999999998              5666666     56677 778899999999


Q ss_pred             HHHHHHHHhcCCCeEEEecCCcccccccHHHHHh---------------------hc-CCcEEEEEcCccc
Q 016486          245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQH---------------------LY-AGFTVWLSQTEAM  293 (388)
Q Consensus       245 E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~---------------------L~-~g~VVyLd~~~e~  293 (388)
                      +.++++++...++.+|.+||+   ..+......-                     +. ..++|||+.+.+.
T Consensus       119 a~~~i~~i~~~g~~pIlvGGt---glYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~  186 (339)
T 3a8t_A          119 AGKAVSEITGRRKLPVLVGGS---NSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKV  186 (339)
T ss_dssp             HHHHHHHHHHTTCEEEEECCC---HHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHH
T ss_pred             HHHHHHHHHhcCCeEEEEcCH---HHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHH
Confidence            999999998888899999997   2433333321                     22 2578999988765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.29  E-value=1.8e-11  Score=110.63  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=64.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH------hcCchhhhhhccCcHHHHHHHHHHHHH-HhcC--CC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLES-LSSH--VR  257 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~------~g~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~--~~  257 (388)
                      ++|+|+|++||||||+++.||+.+|++++++|+++.+.      .|..+.+++.. |.....+....++.. +...  ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~   79 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRN   79 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCC
Confidence            46999999999999999999999999999999999874      23455666653 321112222223322 2221  13


Q ss_pred             eEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc
Q 016486          258 AVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM  293 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~  293 (388)
                      .||..|-     .........|.     .+.+|||+++.++
T Consensus        80 ~~i~dg~-----~~~~~~~~~l~~~~~~~d~vi~l~~~~e~  115 (214)
T 1e4v_A           80 GFLLDGF-----PRTIPQADAMKEAGINVDYVLEFDVPDEL  115 (214)
T ss_dssp             CEEEESC-----CCSHHHHHHHHHTTCCCSEEEEEECCHHH
T ss_pred             CEEEeCC-----CCCHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence            4555552     22223333332     2579999999876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.28  E-value=3.3e-11  Score=114.94  Aligned_cols=150  Identities=14%  Similarity=0.051  Sum_probs=90.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---chhhh--------hhccCc--------HHHH----
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSW--------MLAEGS--------DSVV----  242 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---sI~ei--------f~~~Ge--------~~FR----  242 (388)
                      ...|+|+|++||||||+|+.|+ .+|+++||+|.+..+....   ...++        +..+|.        ..|.    
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~  153 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ  153 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence            4579999999999999999999 6899999999996654321   11111        111110        1111    


Q ss_pred             --HHH-----------HHHHHHHhcC-CCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccc--------cccCHHH
Q 016486          243 --NGE-----------CDVLESLSSH-VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM--------DENSAKE  300 (388)
Q Consensus       243 --e~E-----------~~vL~~L~~~-~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~--------D~~d~~e  300 (388)
                        .++           .+.+..+... ...||..|..     +....|..+ .+.+|||++|+++        ++.+ .+
T Consensus       154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~-----l~~~~~~~~-~d~vI~l~a~~ev~~~Rl~~R~g~s-~e  226 (281)
T 2f6r_A          154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM-----LLEAGWQSM-VHEVWTVVIPETEAVRRIVERDGLS-EA  226 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT-----TTTTTGGGG-CSEEEEEECCHHHHHHHHHHHHCCC-HH
T ss_pred             HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEech-----hhccchHHh-CCEEEEEcCCHHHHHHHHHHcCCCC-HH
Confidence              111           1122222222 3578888754     222223211 3789999999876        1222 34


Q ss_pred             HHHHHHHHhHh---ccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          301 EARRHVKDGKL---GYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       301 ~l~~l~~eR~~---~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      .+.+++..+.+   .+..||++|++++ +   ++++.++|...++.+...
T Consensus       227 ~~~~ri~~q~~~~~~~~~AD~vIdn~~-s---~eel~~~I~~~l~~l~~~  272 (281)
T 2f6r_A          227 AAQSRLQSQMSGQQLVEQSNVVLSTLW-E---SHVTQSQVEKAWNLLQKR  272 (281)
T ss_dssp             HHHHHHHTSCCHHHHHHTCSEEEECSS-C---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHhhHhhCCEEEECCC-C---HHHHHHHHHHHHHHHHHH
Confidence            45555555422   2345999998875 4   458999998888876543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.28  E-value=4e-11  Score=108.01  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=36.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      +..|.|+|++||||||+++.|++.+|++++|+|+++.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence            468999999999999999999999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.27  E-value=1.4e-11  Score=109.61  Aligned_cols=157  Identities=13%  Similarity=0.037  Sum_probs=84.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHH----HHhcCchhhhhhccC---cH----HHHH--HH-HHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE----TFAKQTIDSWMLAEG---SD----SVVN--GE-CDVL  249 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE----~~~g~sI~eif~~~G---e~----~FRe--~E-~~vL  249 (388)
                      .+++.|+|+|++||||||+++.|++.|+..++++|.+.+    ...|..+.++|...+   ..    .|..  .+ .+.+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   86 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   86 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999998876666543322    111223444443211   00    0100  00 0123


Q ss_pred             HHHhcCCCeEEEec----------CCcccccccHHHHHhhc-----CCcEEEEEcCccc---------cccC---HHHHH
Q 016486          250 ESLSSHVRAVVATL----------GGQQGAAARADKWQHLY-----AGFTVWLSQTEAM---------DENS---AKEEA  302 (388)
Q Consensus       250 ~~L~~~~~~VVStG----------GG~~gav~r~enr~~L~-----~g~VVyLd~~~e~---------D~~d---~~e~l  302 (388)
                      ..+...+..||+..          ++ .  ....+....+.     .+.+|||++|+++         +..+   ..+.+
T Consensus        87 ~~~l~~~~~vi~dr~~~s~~~~~~~~-~--~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~  163 (215)
T 1nn5_A           87 KEKLSQGVTLVVDRYAFSGVAFTGAK-E--NFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERA  163 (215)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTS-T--TCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHH
T ss_pred             HHHHHCCCEEEEeCCcccHHHHHhhc-C--CCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHH
Confidence            33334456777662          11 0  11233333332     3689999999886         1111   11233


Q ss_pred             HHHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          303 RRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       303 ~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      .+.|.+....|....++|+.+ .+   +++++++|.+.++.++..
T Consensus       164 ~~~~~~~~~~~~~~~~~Id~~-~~---~e~~~~~i~~~l~~~l~~  204 (215)
T 1nn5_A          164 LRCFHQLMKDTTLNWKMVDAS-KS---IEAVHEDIRVLSEDAIAT  204 (215)
T ss_dssp             HHHHHHHTTCTTSCEEEEETT-SC---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEECC-CC---HHHHHHHHHHHHHHHHhh
Confidence            333333333332223667654 33   569999999999887653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.25  E-value=6.9e-11  Score=110.14  Aligned_cols=153  Identities=12%  Similarity=0.160  Sum_probs=92.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCc----HHHHHHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGS----DSVVNGECDVLESLS  253 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge----~~FRe~E~~vL~~L~  253 (388)
                      .+.+.|+|+|+|||||+|+|+.||+.+|+++|++++++.+....      .+.+++. .|+    +..-++-.+.+.+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~  105 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLV  105 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcc
Confidence            34567889999999999999999999999999999998776532      2233332 233    222222222232333


Q ss_pred             cCCCeEEEecCCcccccccHHHHHhhc----C-CcEEEEEcCccc--c-----------ccCHHHHHHHHHHH----h--
Q 016486          254 SHVRAVVATLGGQQGAAARADKWQHLY----A-GFTVWLSQTEAM--D-----------ENSAKEEARRHVKD----G--  309 (388)
Q Consensus       254 ~~~~~VVStGGG~~gav~r~enr~~L~----~-g~VVyLd~~~e~--D-----------~~d~~e~l~~l~~e----R--  309 (388)
                      .....+|-.|     -+........|.    . ..||+|+++.++  +           .+|..+.++++++.    -  
T Consensus       106 ~~~~g~ilDG-----fPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~p  180 (217)
T 3umf_A          106 DKNCHFLIDG-----YPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKP  180 (217)
T ss_dssp             TTCSEEEEET-----BCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHH
T ss_pred             ccccCccccc-----CCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3334555555     244333333332    2 689999999887  0           12233444444332    1  


Q ss_pred             -HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          310 -KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       310 -~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                       ..+|++...++.+++..+  +++|.++|...|+++
T Consensus       181 l~~~Y~~~~~l~~Idg~~~--~eeV~~~I~~~l~k~  214 (217)
T 3umf_A          181 VIEHYKQQNKVITIDASGT--VDAIFDKVNHELQKF  214 (217)
T ss_dssp             HHHHHHTTTCEEEEETTSC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCEEEEECCCC--HHHHHHHHHHHHHHc
Confidence             135776555555555432  669999999988764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.24  E-value=1.5e-11  Score=110.50  Aligned_cols=151  Identities=6%  Similarity=-0.017  Sum_probs=85.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc-----------------------CCcceechhHHHHHhcCchhhhhhccCcHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL-----------------------GYTPLSTKELLETFAKQTIDSWMLAEGSDS  240 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L-----------------------G~~fID~D~lIE~~~g~sI~eif~~~Ge~~  240 (388)
                      .+++.|+|+|++||||||+++.|++.+                       +|.|++.|.+.+...+..+.++....|...
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            467899999999999999999999998                       345666676655444332322222222222


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc--CCcEEEEE-cCccc-------cccCHHHHHHHH-HHHh
Q 016486          241 VVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLS-QTEAM-------DENSAKEEARRH-VKDG  309 (388)
Q Consensus       241 FRe~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~--~g~VVyLd-~~~e~-------D~~d~~e~l~~l-~~eR  309 (388)
                      +...  +.++.+...+..||..+.- +|.   ...++.+.  ..++|||+ ++.++       .+.+..+.+.++ ...|
T Consensus        90 ~~~~--~~i~~~l~~g~~vi~d~~~-~~~---~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~  163 (204)
T 2qor_A           90 GTLK--SEYDLAVGEGKICLFEMNI-NGV---KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELT  163 (204)
T ss_dssp             EEEH--HHHHHHHHTTCEEEEECCH-HHH---HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred             cCCH--HHHHHHHHcCCeEEEEECH-HHH---HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            1111  1233333344555543310 000   11122222  34799999 77766       122223455543 3345


Q ss_pred             Hhc---ccc-CcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          310 KLG---YSN-ADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       310 ~~~---Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      .+.   |.. +|++|.++  +   +++++++|.+.|+..+
T Consensus       164 ~~~~~~~~~~~d~vi~n~--~---~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          164 REMDEADKVGFNYFIVND--D---LARTYAELREYLLGSY  198 (204)
T ss_dssp             HHHHHHHHHTCSEEEECS--S---HHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhccCcEEEECc--C---HHHHHHHHHHHHHHHh
Confidence            444   544 99988765  3   5699999999988654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.23  E-value=1.1e-10  Score=108.62  Aligned_cols=148  Identities=12%  Similarity=0.067  Sum_probs=94.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh---cCchhhhhhccCcHHHH---------------------
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWMLAEGSDSVV---------------------  242 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~---g~sI~eif~~~Ge~~FR---------------------  242 (388)
                      ..|-|+|.+|||||||++.|++ +|+++||+|.+..+..   +..+.++++..|++.|.                     
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            3589999999999999999999 9999999999987766   34677777777766542                     


Q ss_pred             -HHHH--------HHHHHHhc-CCCeEEEecCCcccccccH-HHHHhhcCCcEEEEEcCccc--------cccCHHHHHH
Q 016486          243 -NGEC--------DVLESLSS-HVRAVVATLGGQQGAAARA-DKWQHLYAGFTVWLSQTEAM--------DENSAKEEAR  303 (388)
Q Consensus       243 -e~E~--------~vL~~L~~-~~~~VVStGGG~~gav~r~-enr~~L~~g~VVyLd~~~e~--------D~~d~~e~l~  303 (388)
                       ++|.        ++.+.+.. ...+||.-..     .+-+ ..+..+ -+.+||+++|+++        |+-+ .+.+.
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~p-----LL~E~~~~~~~-~D~vi~V~ap~e~r~~Rl~~Rdg~s-~eea~  161 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVVP-----LLVESRNWKAR-CDRVLVVDCPVDTQIARVMQRNGFT-REQVE  161 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECT-----TCTTCHHHHHH-CSEEEEEECCHHHHHHHHHHHHCCC-HHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEe-----cccccCCcccc-CCeEEEEECCHHHHHHHHHhcCCCC-HHHHH
Confidence             1111        11222222 2345555442     3333 344332 3789999999987        2222 34444


Q ss_pred             HHHHHh---HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          304 RHVKDG---KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       304 ~l~~eR---~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +++...   +..++.||++|++++.+   .+++.++|...++.++
T Consensus       162 ~ri~~Q~~~eek~~~AD~VIdN~~gs---le~l~~qV~~l~~~~~  203 (210)
T 4i1u_A          162 AIIARQATREARLAAADDVIVNDAAT---PDALAVQVDALHQRYL  203 (210)
T ss_dssp             HHHHHSCCHHHHHHTCSEEEECSSCC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHhCCEEEECCCCC---HHHHHHHHHHHHHHHH
Confidence            444433   23445699999988223   3477777766666554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.22  E-value=1.6e-11  Score=109.26  Aligned_cols=35  Identities=20%  Similarity=0.091  Sum_probs=31.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+++.|+|+|++||||||+++.|++.|+..++++|
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~   42 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK   42 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence            45789999999999999999999999998888774

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.19  E-value=3.7e-11  Score=124.64  Aligned_cols=103  Identities=16%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcce-----echhHHHHHhcC-chhhhhhccCcHHHHHHHHHHHHHH------h
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL-----STKELLETFAKQ-TIDSWMLAEGSDSVVNGECDVLESL------S  253 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-----D~D~lIE~~~g~-sI~eif~~~Ge~~FRe~E~~vL~~L------~  253 (388)
                      +..|+|+|+|||||||+|+.||+.|++.++     +.|+++++..+. .+.++|...+++.|+..|..++..+      .
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L  114 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL  114 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999987775     459999988876 4678998889999886665443322      1


Q ss_pred             --cCCCeEE--EecCCcccccccHHHHHhhcC-Cc-EEEEEcCc
Q 016486          254 --SHVRAVV--ATLGGQQGAAARADKWQHLYA-GF-TVWLSQTE  291 (388)
Q Consensus       254 --~~~~~VV--StGGG~~gav~r~enr~~L~~-g~-VVyLd~~~  291 (388)
                        ..+..||  +|+++   ...+..+++.++. |+ ++||++..
T Consensus       115 ~~~~g~~VIvDat~~~---~~~R~~~~~~a~~~g~~v~~l~~~~  155 (520)
T 2axn_A          115 AKEGGQIAVFDATNTT---RERRHMILHFAKENDFKAFFIESVC  155 (520)
T ss_dssp             HHSCCCEEEEESCCCS---HHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             HhcCCceEEecCCCCC---HHHHHHHHHHHHHcCCeEEEEEEeC
Confidence              3445555  55655   4667676676664 64 67777653

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.18  E-value=2.6e-11  Score=127.35  Aligned_cols=150  Identities=18%  Similarity=0.177  Sum_probs=90.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC----Cc--ceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG----YT--PLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHVR  257 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG----~~--fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~~  257 (388)
                      +++.|+|+|++||||||+|+.|+++|+    ++  ++|+|.+.....+.   ..|. .+..+.++.+ .++++.+...+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~---~~f~~~er~~~i~ri-~~v~~~~~~~g~  470 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSE---LGFTREDRHTNIQRI-AFVATELTRAGA  470 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTT---CCCSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccc---cCCChhHHHHHHHHH-HHHHHHHHhCCC
Confidence            467899999999999999999999987    44  55566643321111   1111 1111122222 235555655566


Q ss_pred             eEEEecCC-cccccccHHHHHhhcC-C--cEEEEEcCccc----cccCHHH-----HHHHHHHHhHhccc--cCcEEEEc
Q 016486          258 AVVATLGG-QQGAAARADKWQHLYA-G--FTVWLSQTEAM----DENSAKE-----EARRHVKDGKLGYS--NADVVVKL  322 (388)
Q Consensus       258 ~VVStGGG-~~gav~r~enr~~L~~-g--~VVyLd~~~e~----D~~d~~e-----~l~~l~~eR~~~Y~--~AD~vV~~  322 (388)
                      .||++.-. .  ...+..+++.+.. +  ++|||++|+++    +.....+     .+..++..|.++|.  .+|++|++
T Consensus       471 ~VI~~~is~~--~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDt  548 (573)
T 1m8p_A          471 AVIAAPIAPY--EESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF  548 (573)
T ss_dssp             EEEEECCCCC--HHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT
T ss_pred             EEEEEcCCCc--HHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEEC
Confidence            67765321 0  0123455556665 5  79999999876    2111111     12223345667775  48899998


Q ss_pred             CCCCcccHHHHHHHHHHHHHH
Q 016486          323 QGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      ++.++   ++++++|+..|+.
T Consensus       549 s~~s~---eevv~~Il~~l~~  566 (573)
T 1m8p_A          549 SKQSV---RSIVHEIILVLES  566 (573)
T ss_dssp             TTSCH---HHHHHHHHHHHHH
T ss_pred             CCCCH---HHHHHHHHHHHHh
Confidence            88765   4999999988864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.18  E-value=1.4e-10  Score=107.95  Aligned_cols=41  Identities=24%  Similarity=0.268  Sum_probs=38.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      +++.|+|+|++||||||+++.|++.+|++++++|+++.+..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~   68 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAA   68 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHH
Confidence            57899999999999999999999999999999999988753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.18  E-value=3.2e-10  Score=100.27  Aligned_cols=34  Identities=21%  Similarity=0.020  Sum_probs=29.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCc--ceec
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLST  217 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~--fID~  217 (388)
                      ++++.|+|+|++||||||+++.||+.|+..  ++.+
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~   37 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT   37 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence            457889999999999999999999999874  6654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.14  E-value=2.7e-10  Score=104.85  Aligned_cols=149  Identities=12%  Similarity=0.137  Sum_probs=87.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VV  260 (388)
                      |.|+|+|+|||||+|+|+.||+.+|+++|++.+++.+...      ..+.+++. .|+--=.++-..++..-......+|
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~-~G~lvpd~iv~~lv~~~l~~~~~~i   79 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYME-RGELVPDDLIIALIEEVFPKHGNVI   79 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHh-cCCcCCHHHHHHHHHHhhccCCceE
Confidence            5799999999999999999999999999999999876542      12222222 2332112222333333333333455


Q ss_pred             EecCCcccccccHHHHHhh----c-----CCcEEEEEcCccc----------c-----------------------ccCH
Q 016486          261 ATLGGQQGAAARADKWQHL----Y-----AGFTVWLSQTEAM----------D-----------------------ENSA  298 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L----~-----~g~VVyLd~~~e~----------D-----------------------~~d~  298 (388)
                      -.|-     +......+.|    .     -..||+|++|.++          +                       .++.
T Consensus        80 lDGf-----PRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~  154 (206)
T 3sr0_A           80 FDGF-----PRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDK  154 (206)
T ss_dssp             EESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGS
T ss_pred             ecCC-----chhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCC
Confidence            4552     3333322222    2     1569999999876          0                       0122


Q ss_pred             HHHHHHHHHHh-------HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          299 KEEARRHVKDG-------KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       299 ~e~l~~l~~eR-------~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      .+.++++++.-       ..+|++....+.+++..+  +++|.++|.+.|.+
T Consensus       155 ~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~--~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          155 PEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKP--VEEVYRQVLEVIGD  204 (206)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSC--HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC--HHHHHHHHHHHHcc
Confidence            34444444332       235766555555555433  56999999888753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.14  E-value=1.1e-10  Score=109.00  Aligned_cols=114  Identities=13%  Similarity=0.047  Sum_probs=74.0

Q ss_pred             hHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcC--CcceechhH---------HHHHhcCchhhhhhccCcHHH
Q 016486          173 WESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKEL---------LETFAKQTIDSWMLAEGSDSV  241 (388)
Q Consensus       173 W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~l---------IE~~~g~sI~eif~~~Ge~~F  241 (388)
                      |..+..+.....++..|+|+|+|||||||+++.|++.++  +.++|+|.+         +.+..|..+.+++..    .+
T Consensus        19 ~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~----~~   94 (253)
T 2p5t_B           19 LRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD----FA   94 (253)
T ss_dssp             HHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH----HH
T ss_pred             HHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH----HH
Confidence            333333333444578899999999999999999999997  678899987         444456666555442    23


Q ss_pred             HHHHHHHHHHHhcCC-CeEEEecCCcccccccHHHHHhhcC-Cc---EEEEEcCcc
Q 016486          242 VNGECDVLESLSSHV-RAVVATLGGQQGAAARADKWQHLYA-GF---TVWLSQTEA  292 (388)
Q Consensus       242 Re~E~~vL~~L~~~~-~~VVStGGG~~gav~r~enr~~L~~-g~---VVyLd~~~e  292 (388)
                      +++...+++.+...+ .+||.++++.  ...+..+++.++. |.   +|||++|++
T Consensus        95 ~~~~~~~~~~~~~~g~~vVid~~~~~--~~~~~~~~~~l~~~g~~v~lv~l~~~~e  148 (253)
T 2p5t_B           95 GKMVESLVTKLSSLGYNLLIEGTLRT--VDVPKKTAQLLKNKGYEVQLALIATKPE  148 (253)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCTTS--SHHHHHHHHHHHHTTCEEEEEEECCCHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCCCC--HHHHHHHHHHHHHCCCcEEEEEEeCCHH
Confidence            444456666665543 6777655442  3345566666663 55   456677664

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.13  E-value=9.7e-11  Score=103.28  Aligned_cols=147  Identities=8%  Similarity=-0.077  Sum_probs=83.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCC-cceechhHHHHHhcCchhhhhh-ccCcHHHHHHHHHHHHHHhcCC-CeEEEe
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGY-TPLSTKELLETFAKQTIDSWML-AEGSDSVVNGECDVLESLSSHV-RAVVAT  262 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~-~fID~D~lIE~~~g~sI~eif~-~~Ge~~FRe~E~~vL~~L~~~~-~~VVSt  262 (388)
                      +..|+|+|++||||||+++.|+..++. .++++|++.+......+.++.. ......++.++.. +....... .+|+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~   80 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY   80 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence            457899999999999999999998875 8999998865432222223221 1111233333332 22222233 344443


Q ss_pred             cCCcccccccHHHHHhhc------CCcEEEEEcCccc----------cc-cCHHHHHHHHHHHhHhccccCcEEEEcCCC
Q 016486          263 LGGQQGAAARADKWQHLY------AGFTVWLSQTEAM----------DE-NSAKEEARRHVKDGKLGYSNADVVVKLQGW  325 (388)
Q Consensus       263 GGG~~gav~r~enr~~L~------~g~VVyLd~~~e~----------D~-~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~  325 (388)
                      ..+   .......+++++      +..+|||+++++.          |. -++ +.+.. ++++...|...+.+|+++..
T Consensus        81 ~~~---~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~~~~~~~~~~~~~ii~tsh~  155 (189)
T 2bdt_A           81 IAF---PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-VEEFESKGIDERYFYNTSHL  155 (189)
T ss_dssp             CCC---HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-HHHHHHTTCCTTSEEECSSS
T ss_pred             ccC---HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-HHHHhhcCCCccEEEeCCCC
Confidence            222   122222234432      1347889988877          11 111 23444 67777777767788888876


Q ss_pred             CcccHHHHHHHHH
Q 016486          326 DADHAKSVAQASL  338 (388)
Q Consensus       326 s~e~~eeVa~eIl  338 (388)
                      +.+.+++++++|+
T Consensus       156 ~~~~~e~~~~~i~  168 (189)
T 2bdt_A          156 QPTNLNDIVKNLK  168 (189)
T ss_dssp             CGGGHHHHHHHHH
T ss_pred             ChhhHHHHHHHHh
Confidence            2222568888777

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.13  E-value=9.7e-11  Score=102.80  Aligned_cols=151  Identities=18%  Similarity=0.130  Sum_probs=90.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCc--ceechhHHHHHhcCchhhhhhccCcHHHHHHHH--HHHHHHhcCCCe
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT--PLSTKELLETFAKQTIDSWMLAEGSDSVVNGEC--DVLESLSSHVRA  258 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~--fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~--~vL~~L~~~~~~  258 (388)
                      ..+|..|+|+|++||||||+++.||..++..  ++|+|++.+......+..++.+.++....-.|.  .........+..
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~   85 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYF   85 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCe
Confidence            3457899999999999999999999988766  889998865433333333433322211111111  111112222333


Q ss_pred             EEEecCCcccccccHHHHHhh---cC-CcEEEEEcCccc--------cc---cCHHHHHHHHHHHhHhccccCcEEEEcC
Q 016486          259 VVATLGGQQGAAARADKWQHL---YA-GFTVWLSQTEAM--------DE---NSAKEEARRHVKDGKLGYSNADVVVKLQ  323 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L---~~-g~VVyLd~~~e~--------D~---~d~~e~l~~l~~eR~~~Y~~AD~vV~~d  323 (388)
                      ++..+      +.....+..+   .. ..++++..+.+.        +.   .+ .+.+.++++.+.+.|..++++|+++
T Consensus        86 ~~~~~------~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld-~~~~~~~~~~~~~l~~~~~~~i~t~  158 (191)
T 1zp6_A           86 VILDG------VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSD-PLVVADLHSQFADLGAFEHHVLPVS  158 (191)
T ss_dssp             EEECS------CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC-HHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred             EEEec------cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCC-HHHHHHHHHHHhccCcccccEEECC
Confidence            44333      1111122222   22 347888888765        11   13 3567778888888887677889988


Q ss_pred             CCCcccHHHHHHHHHHHHHH
Q 016486          324 GWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       324 ~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +.+++   +++++|+..++.
T Consensus       159 ~~~~~---~~~~~i~~~l~~  175 (191)
T 1zp6_A          159 GKDTD---QALQSAINALQS  175 (191)
T ss_dssp             TCCTT---TTTTTTHHHHHH
T ss_pred             CCCHH---HHHHHHHHHHHh
Confidence            76665   888888888764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.09  E-value=7.6e-10  Score=104.26  Aligned_cols=147  Identities=18%  Similarity=0.160  Sum_probs=87.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhh------hhhc----------------c
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDS------WMLA----------------E  236 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~e------if~~----------------~  236 (388)
                      ++..|+|+|++||||||+++.||+.||+.++|+|.++....      |.++.+      +...                .
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~   87 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA   87 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence            46789999999999999999999999999999999976543      332221      1110                0


Q ss_pred             C---------------------cHHHHHHHHHHHHHHhcC-CCeEEEec--CCcccccccHHHHHhhcCCcEEEEEcCcc
Q 016486          237 G---------------------SDSVVNGECDVLESLSSH-VRAVVATL--GGQQGAAARADKWQHLYAGFTVWLSQTEA  292 (388)
Q Consensus       237 G---------------------e~~FRe~E~~vL~~L~~~-~~~VVStG--GG~~gav~r~enr~~L~~g~VVyLd~~~e  292 (388)
                      |                     ....|+.-.+..+.+... +.+|+ -|  .|   .+.-++      ..+.|||++|++
T Consensus        88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~-~GRd~g---t~V~pd------a~lkifl~A~~e  157 (233)
T 3r20_A           88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVV-EGRDIG---TVVLPD------ADVKIFLTASAE  157 (233)
T ss_dssp             TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEE-EESSCC---CCCCTT------CSEEEEEECCHH
T ss_pred             CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEE-ecccce---eEEcCC------CCEEEEEECCHH
Confidence            0                     112233323334445554 44444 33  22   122221      368999999998


Q ss_pred             cc-----------c-cCHHHHHHHHHHHhH----hcc----ccCc--EEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          293 MD-----------E-NSAKEEARRHVKDGK----LGY----SNAD--VVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       293 ~D-----------~-~d~~e~l~~l~~eR~----~~Y----~~AD--~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                      +-           + ....+.+.+.+.+|.    ..|    ..++  ++|++++++++   ++++.|+..++..
T Consensus       158 ~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~ie---e~v~~I~~~i~~~  228 (233)
T 3r20_A          158 ERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQA---QVIAHLLDLVTAQ  228 (233)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHH---HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHH---HHHHHHHHHHHHh
Confidence            70           1 111333444444443    223    2344  99999999865   9999988887654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.08  E-value=1.2e-10  Score=121.66  Aligned_cols=164  Identities=16%  Similarity=0.106  Sum_probs=93.6

Q ss_pred             hhhHHhhhhhhh-ccCCCeEEEEecCCCchHHHHHHHHHhcCC-----cceechhHHHHHhcCchhhhhhcc-CcHHHHH
Q 016486          171 ESWESLTAGSMQ-LLKGTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQTIDSWMLAE-GSDSVVN  243 (388)
Q Consensus       171 ~~W~sl~~~~~~-~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~-----~fID~D~lIE~~~g~sI~eif~~~-Ge~~FRe  243 (388)
                      +.|..+.+...+ ...+..|+|+|++||||||+|+.|++.|+.     .++|+|.+.+...+.   ..|... ....++.
T Consensus       356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~---~~f~~~er~~~l~~  432 (546)
T 2gks_A          356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRG---LGFSKEDRITNILR  432 (546)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTT---CCSSHHHHHHHHHH
T ss_pred             hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccc---ccccHHHHHHHHHH
Confidence            356666654422 123678999999999999999999999974     889999865443221   112110 1111121


Q ss_pred             HHHHHHHHHhcCCCeEEEecCC-cccccccHHHHHhhcC-C-cEEEEEcCccc----ccc-----CHHHHHHHHHHHhHh
Q 016486          244 GECDVLESLSSHVRAVVATLGG-QQGAAARADKWQHLYA-G-FTVWLSQTEAM----DEN-----SAKEEARRHVKDGKL  311 (388)
Q Consensus       244 ~E~~vL~~L~~~~~~VVStGGG-~~gav~r~enr~~L~~-g-~VVyLd~~~e~----D~~-----d~~e~l~~l~~eR~~  311 (388)
                      +. ++.+.+.+.+..||..+.- +  -..+..+++.+.+ + ++|||++|.++    ...     +..+.+..++..|.+
T Consensus       433 i~-~~~~~~l~~G~~VI~d~~~~~--~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~  509 (546)
T 2gks_A          433 VG-FVASEIVKHNGVVICALVSPY--RSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDP  509 (546)
T ss_dssp             HH-HHHHHHHHTTCEEEEECCCCC--HHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBC
T ss_pred             HH-HHHHHHHhCCCEEEEEcCCCC--HHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhc
Confidence            11 2333444445556655321 0  0112233444443 5 79999999987    111     111233334445556


Q ss_pred             ccc--cCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          312 GYS--NADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       312 ~Y~--~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +|.  .+|++|++++.++   ++++++|+..|+.
T Consensus       510 ~e~~~~adivIDts~~s~---eev~~~I~~~L~~  540 (546)
T 2gks_A          510 YEPPVAPEVRVDTTKLTP---EESALKILEFLKK  540 (546)
T ss_dssp             CCCCSSCSEEEETTTSCH---HHHHHHHHHHHHH
T ss_pred             cccccCCcEEEECCCCCH---HHHHHHHHHHHHH
Confidence            664  3899999987665   4999999988864

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=99.07  E-value=2.1e-10  Score=119.31  Aligned_cols=119  Identities=14%  Similarity=0.082  Sum_probs=83.0

Q ss_pred             hhhHHhhhhhh-hccCCCeEEEEecCCCchHHHHHHHHHhcCC-------cceechhHHHHHhcCchhhhhhccCcHHHH
Q 016486          171 ESWESLTAGSM-QLLKGTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKELLETFAKQTIDSWMLAEGSDSVV  242 (388)
Q Consensus       171 ~~W~sl~~~~~-~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~-------~fID~D~lIE~~~g~sI~eif~~~Ge~~FR  242 (388)
                      +.|..+..... ...++..|+|+|+|||||||||++||++|+.       .|+|+|.  .              ++  . 
T Consensus       379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~--~--------------~e--i-  439 (511)
T 1g8f_A          379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN--K--------------TE--L-  439 (511)
T ss_dssp             HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT--C--------------HH--H-
T ss_pred             hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC--c--------------HH--H-
Confidence            45666665432 2335789999999999999999999999997       7999998  0              00  1 


Q ss_pred             HHHHHHHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEEcCccccccCHHHHHHHHHHHhHhccccCcEEEEc
Q 016486          243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKL  322 (388)
Q Consensus       243 e~E~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD~vV~~  322 (388)
                         ..++..+.+.+..||++--     .. ..+|+.++++.+++|.                       .|..++++|++
T Consensus       440 ---~~va~~~~~~G~~Vv~~~~-----sp-~~~R~~l~~g~fv~v~-----------------------~p~~adI~IDT  487 (511)
T 1g8f_A          440 ---LSLIQDFIGSGSGLIIPDQ-----WE-DDKDSVVGKQNVYLLD-----------------------TSSSADIQLES  487 (511)
T ss_dssp             ---HTTHHHHHHTTCEEEESSC-----CC-GGGGGGSCCTTEEEEE-----------------------SSTTCSEECSS
T ss_pred             ---HHHHHHHHhcCCeEEEecC-----CH-HHHHHHhcCCCEEEEe-----------------------cCCCCcEEEEC
Confidence               1123344444455555431     11 4678888777777775                       35567899988


Q ss_pred             CCCCcccHHHHHHHHHHHHHH
Q 016486          323 QGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       323 d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +..++   ++++++|++.|+.
T Consensus       488 s~~s~---eevV~~Il~~L~~  505 (511)
T 1g8f_A          488 ADEPI---SHIVQKVVLFLED  505 (511)
T ss_dssp             TTCCH---HHHHHHHHHHHHH
T ss_pred             CCCCH---HHHHHHHHHHHHh
Confidence            87765   4999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.06  E-value=2.7e-10  Score=106.91  Aligned_cols=99  Identities=8%  Similarity=0.004  Sum_probs=66.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc--------------------hhhhhh-ccCcHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWML-AEGSDSVVNGE  245 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s--------------------I~eif~-~~Ge~~FRe~E  245 (388)
                      +.|+|+|++||||||+|+.||+.+++.++++|.++... +++                    ..++++ ..+...|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~-~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~   80 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCP-QIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL   80 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCG-GGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccC-CCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH
Confidence            36899999999999999999999999999999976321 111                    011122 35667888888


Q ss_pred             HHHHHHHhcCCCeEEEecCCcccccccHHHHHhhc-----CC---cEEEEEcCc-cc
Q 016486          246 CDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-----AG---FTVWLSQTE-AM  293 (388)
Q Consensus       246 ~~vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~-----~g---~VVyLd~~~-e~  293 (388)
                      ...+ ++...+..||.+||+.   ...   ...+.     .+   .+|||++|. +.
T Consensus        81 ~~~i-~~~~~g~~vIl~gg~~---~~~---~~~~~~~~~~~~~~~~~i~l~~~~~e~  130 (253)
T 2ze6_A           81 IFEV-DWRKSEEGLILEGGSI---SLL---NCMAKSPFWRSGFQWHVKRLRLGDSDA  130 (253)
T ss_dssp             HHHH-HTTTTSSEEEEEECCH---HHH---HHHHHCTTTTSSCEEEEEECCCCCHHH
T ss_pred             HHHH-HHHhCCCCeEEeccHH---HHH---HHHHhcccccccCceEEEEecchhHHH
Confidence            7777 6665555666665541   211   22222     22   689999987 43

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.03  E-value=8.1e-10  Score=98.87  Aligned_cols=151  Identities=11%  Similarity=-0.002  Sum_probs=84.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-CCcceechhHHHHHhcCch-h------hhhhccCcHHHHHHHHHHHHHHh---
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTI-D------SWMLAEGSDSVVNGECDVLESLS---  253 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~~~g~sI-~------eif~~~Ge~~FRe~E~~vL~~L~---  253 (388)
                      ++..|.|+|++||||||+++.|++.+ ++.+++.|.++........ .      ++........+.+.-...+....   
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~   99 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSV   99 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCCCC
Confidence            35678999999999999999999999 8999999998643221111 0      01111111222221122222211   


Q ss_pred             --------cCCCeEEEecCCcccccccHHHHHhhcC-CcEEEEEcCccc----------cccCHH----HHHHHHHHHhH
Q 016486          254 --------SHVRAVVATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM----------DENSAK----EEARRHVKDGK  310 (388)
Q Consensus       254 --------~~~~~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~----------D~~d~~----e~l~~l~~eR~  310 (388)
                              .....||.+|..     ... ....... +.+|||+++.+.          +.+...    +.....|.++.
T Consensus       100 ~~~~~~~~~~~~~vi~eg~~-----~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~  173 (207)
T 2qt1_A          100 VSTDQESAEEIPILIIEGFL-----LFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYR  173 (207)
T ss_dssp             CCC-----CCCCEEEEECTT-----CTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHH
T ss_pred             cCCCeeecCCCCEEEEeehH-----HcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHH
Confidence                    123578888743     211 1122222 789999999876          011111    12223344444


Q ss_pred             hcccc-CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          311 LGYSN-ADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       311 ~~Y~~-AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      ..|.. +|.++.+++..+  ++++.++|.+.++.
T Consensus       174 ~~~~~~~~~v~~Id~~~~--~eev~~~I~~~l~~  205 (207)
T 2qt1_A          174 QEMQDITWEVVYLDGTKS--EEDLFLQVYEDLIQ  205 (207)
T ss_dssp             HHGGGCSSCCEEEETTSC--HHHHHHHHHHHHTT
T ss_pred             HHHHhcCCeEEEecCCCC--HHHHHHHHHHHHHh
Confidence            55555 776644443322  56999988888764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.00  E-value=2.2e-09  Score=102.82  Aligned_cols=111  Identities=9%  Similarity=0.046  Sum_probs=67.4

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhc--CCcceechhHHHHHhcC-----chhhhhhccCcHHHHHHHHHHHHHHh
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQ-----TIDSWMLAEGSDSVVNGECDVLESLS  253 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID~D~lIE~~~g~-----sI~eif~~~Ge~~FRe~E~~vL~~L~  253 (388)
                      .+..++..|+|+|+|||||||+++.|++.+  ++.+||+|.+.....+.     ...++.......++..+...+++.+.
T Consensus        28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l  107 (287)
T 1gvn_B           28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLS  107 (287)
T ss_dssp             CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHH
Confidence            344467889999999999999999999999  89999999875332110     01111111112345555555555554


Q ss_pred             c-CCCeEEEecCCcccccccHHHHHhhcC-Cc---EEEEEcCccc
Q 016486          254 S-HVRAVVATLGGQQGAAARADKWQHLYA-GF---TVWLSQTEAM  293 (388)
Q Consensus       254 ~-~~~~VVStGGG~~gav~r~enr~~L~~-g~---VVyLd~~~e~  293 (388)
                      . ...+|+.+..+  +...+...++.++. |+   ++|+.+|++.
T Consensus       108 ~~g~~vIld~~~~--~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~  150 (287)
T 1gvn_B          108 DQGYNLVIEGTGR--TTDVPIQTATMLQAKGYETKMYVMAVPKIN  150 (287)
T ss_dssp             HHTCCEEECCCCC--CSHHHHHHHHHHHTTTCEEEEEEECCCHHH
T ss_pred             hcCCeEEEECCCC--CHHHHHHHHHHHHhCCCcEEEEEEECCHHH
Confidence            3 34566654432  12223455556654 43   6888888864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.00  E-value=2.4e-09  Score=98.87  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET  223 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~  223 (388)
                      ++..|+|+|++||||||+++.||+.+|+..++.|+++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~   64 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE   64 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            467899999999999999999999999999999888765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.00  E-value=7.2e-11  Score=120.05  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechh-----HHHHHhcC-chhhhhhccCcHHHHHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE-----LLETFAKQ-TIDSWMLAEGSDSVVNGECDVLES  251 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~-----lIE~~~g~-sI~eif~~~Ge~~FRe~E~~vL~~  251 (388)
                      ++..|+|+|+|||||||+|+.||+.|++.++|+|.     +.++..|. ...++|+..|++.|+..|..++..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~  110 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA  110 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999999988888765     66777776 456889999998887777654433

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.99  E-value=2.4e-10  Score=112.72  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc--------------------hhhhhhccCcHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT--------------------IDSWMLAEGSDSVVNGEC  246 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s--------------------I~eif~~~Ge~~FRe~E~  246 (388)
                      +.|+|+|++||||||+|+.||+.++..+|++|.++... |++                    +.+++...++..|++.+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~   84 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-GMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADAL   84 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-TCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-CCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHH
Confidence            47999999999999999999999999999999985432 333                    345567788999999999


Q ss_pred             HHHHHHhcCCCeEEEecCC
Q 016486          247 DVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       247 ~vL~~L~~~~~~VVStGGG  265 (388)
                      ++++++...+..||.+||+
T Consensus        85 ~~i~~i~~~g~~~IlvGGt  103 (323)
T 3crm_A           85 AAMAKATARGRIPLLVGGT  103 (323)
T ss_dssp             HHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHHHHcCCeEEEECCc
Confidence            9999998878889999987

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.98  E-value=1.6e-09  Score=102.14  Aligned_cols=103  Identities=10%  Similarity=0.054  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh------cCchhhhhhccCcHHHHHHHHHHHHH-HhcC--
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSSH--  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~------g~sI~eif~~~Ge~~FRe~E~~vL~~-L~~~--  255 (388)
                      ..+++-|+|++||||||+++.||+.+|+++|++|+++.+..      |..+.+++.. |+....++...++++ +...  
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~-G~lvpdei~~~ll~~~l~~~~~   85 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDE-GKLVPDSLIIGLVKERLKEADC   85 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHSGGG
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhh-ccccccHHHHHHHHHHHhCccc
Confidence            35789999999999999999999999999999999988752      3345555553 665555555555544 3221  


Q ss_pred             CCeEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc
Q 016486          256 VRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM  293 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~  293 (388)
                      .+.+|-.|  +   .......+.|.     ...||||++|.++
T Consensus        86 ~~g~ILDG--f---PRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~  123 (230)
T 3gmt_A           86 ANGYLFDG--F---PRTIAQADAMKEAGVAIDYVLEIDVPFSE  123 (230)
T ss_dssp             TTCEEEES--C---CCSHHHHHHHHHTTCCCSEEEEECCCHHH
T ss_pred             CCCeEecC--C---CCcHHHHHHHHHhCCCccEEEEEeCCHHH
Confidence            22344344  2   44444344443     2579999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.97  E-value=4.6e-09  Score=97.42  Aligned_cols=156  Identities=13%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC--CcceechhHHHHHhcCchhhhhhccC---cH---H-HHHHHHH----HHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETFAKQTIDSWMLAEG---SD---S-VVNGECD----VLE  250 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~lIE~~~g~sI~eif~~~G---e~---~-FRe~E~~----vL~  250 (388)
                      .+|+.|+|+|++||||||+++.|++.|+  +.++.+..-.....|..+.+++....   ..   . |.....+    ++.
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~  103 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI  103 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999996  56665532211112222333332211   00   0 1000000    111


Q ss_pred             HHhcCCCeEEEe----------cCCcccccccHHHHHhh--------cCCcEEEEEcCccc-------cc---c--C---
Q 016486          251 SLSSHVRAVVAT----------LGGQQGAAARADKWQHL--------YAGFTVWLSQTEAM-------DE---N--S---  297 (388)
Q Consensus       251 ~L~~~~~~VVSt----------GGG~~gav~r~enr~~L--------~~g~VVyLd~~~e~-------D~---~--d---  297 (388)
                      .....+..||+.          |++.   -+..+.+..|        ....+|||++|+++       .+   +  +   
T Consensus       104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r---~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~  180 (229)
T 4eaq_A          104 PALKEGKVVLCDRYIDSSLAYQGYAR---GIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED  180 (229)
T ss_dssp             HHHHTTCEEEEECCHHHHCCCCCCCS---CSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred             HHHHCCCEEEECCchhHHHHHHHhhc---CCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence            222345678887          7652   3333332222        23679999999987       00   0  1   


Q ss_pred             --HHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhh
Q 016486          298 --AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQ  346 (388)
Q Consensus       298 --~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~  346 (388)
                        ..+++++.|.+....|...-++|+.++ +   +++|+++|.+.|+.++.
T Consensus       181 ~~~~~rv~~~y~~l~~~~~~~~~vIDa~~-s---~eev~~~I~~~l~~~l~  227 (229)
T 4eaq_A          181 LKFHEKVIEGYQEIIHNESQRFKSVNADQ-P---LENVVEDTYQTIIKYLE  227 (229)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEETTS-C---HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEeCCC-C---HHHHHHHHHHHHHHHhc
Confidence              111222222222222221224555543 3   56999999999988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.94  E-value=1.6e-09  Score=102.14  Aligned_cols=102  Identities=11%  Similarity=0.071  Sum_probs=63.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc-CCcceechhHHHHHhcCchhh--hhhccCcHHHHHHHHHHHHHHh---cCCCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLS---SHVRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID~D~lIE~~~g~sI~e--if~~~Ge~~FRe~E~~vL~~L~---~~~~~VV  260 (388)
                      +.|+|+|++||||||+++.|++++ |+.++++|.+.+...+++...  -+...++..+.+...+++....   ..+..||
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi   82 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEE
Confidence            579999999999999999999985 999999998777665532210  1112233334333334444444   4445666


Q ss_pred             EecCCcccccccHHHHHhh----c-CC---cEEEEEcCccc
Q 016486          261 ATLGGQQGAAARADKWQHL----Y-AG---FTVWLSQTEAM  293 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L----~-~g---~VVyLd~~~e~  293 (388)
                      ..|..     .....++.+    . .+   .+|||++|.++
T Consensus        83 ~d~~~-----~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~  118 (301)
T 1ltq_A           83 ISDTN-----LNPERRLAWETFAKEYGWKVEHKVFDVPWTE  118 (301)
T ss_dssp             ECSCC-----CCHHHHHHHHHHHHHTTCEEEEEECCCCHHH
T ss_pred             EeCCC-----CCHHHHHHHHHHHHHcCCcEEEEEEECCHHH
Confidence            65533     333333322    2 13   69999998876

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.88  E-value=3e-09  Score=106.97  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG  264 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGG  264 (388)
                      ++..|+|+|+|||||||+++.|++.+|+.+||.|.+-                  .++.+...+...+.....+||.+.+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~~~  318 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------------SWQRCVSSCQAALRQGKRVVIDNTN  318 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------------SHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------------HHHHHHHHHHHHHhcCCcEEEeCCC
Confidence            4578999999999999999999999999999999961                  2344445555555555566776554


Q ss_pred             CcccccccHHHHHhhcC-C---cEEEEEcCccc
Q 016486          265 GQQGAAARADKWQHLYA-G---FTVWLSQTEAM  293 (388)
Q Consensus       265 G~~gav~r~enr~~L~~-g---~VVyLd~~~e~  293 (388)
                      +.  ...+...++.++. +   .+|||+++.++
T Consensus       319 ~~--~~~r~~~~~~~~~~~~~~~~v~l~~~~e~  349 (416)
T 3zvl_A          319 PD--VPSRARYIQCAKDAGVPCRCFNFCATIEQ  349 (416)
T ss_dssp             CS--HHHHHHHHHHHHHHTCCEEEEEECCCHHH
T ss_pred             CC--HHHHHHHHHHHHHcCCeEEEEEEeCCHHH
Confidence            42  2334444444443 3   58999888754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.84  E-value=1.6e-10  Score=115.52  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcc--------------------eechhHHHHHhcCchhhhhhccCcHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTP--------------------LSTKELLETFAKQTIDSWMLAEGSDSVVNGEC  246 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f--------------------ID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~  246 (388)
                      .+|+|+|+|||||||+|+.||+.|+++|                    +|+|.+|++..|+++.++|++.|+ .||++|.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~if~~~ge-~fr~~E~  103 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGL-FKDHVED  103 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHHHHTTTC-CGGGTTC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHHHHHhcc-cchHHHh
Confidence            4699999999999999999999999999                    999999999999999999999999 9999998


Q ss_pred             HHHHHH
Q 016486          247 DVLESL  252 (388)
Q Consensus       247 ~vL~~L  252 (388)
                      ..++..
T Consensus       104 ~~~~~~  109 (359)
T 2ga8_A          104 VNFQPV  109 (359)
T ss_dssp             TTCCCE
T ss_pred             hhcccc
Confidence            776443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.75  E-value=7.3e-08  Score=88.92  Aligned_cols=157  Identities=17%  Similarity=0.067  Sum_probs=81.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHHHhcCchhhhhhccC-----c---------HHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETFAKQTIDSWMLAEG-----S---------DSVVNGEC  246 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~~~g~sI~eif~~~G-----e---------~~FRe~E~  246 (388)
                      ++|+.|+|.|++||||||+++.|++.|+   +.++-+...-....|..+.+++....     .         +.+..++.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~   83 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG   83 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999984   55554422100001111222222110     0         11111222


Q ss_pred             HHHHHHhcCCCeEEEe----------cCCcccccccHHHHH-------hhcCCcEEEEEcCccc-------c-ccC----
Q 016486          247 DVLESLSSHVRAVVAT----------LGGQQGAAARADKWQ-------HLYAGFTVWLSQTEAM-------D-ENS----  297 (388)
Q Consensus       247 ~vL~~L~~~~~~VVSt----------GGG~~gav~r~enr~-------~L~~g~VVyLd~~~e~-------D-~~d----  297 (388)
                      .+...+ ..+..||+.          |+|. |. ..+....       .+....+|||++|+++       . ..+    
T Consensus        84 ~i~p~l-~~g~~Vi~DRy~~S~~ayq~~~~-g~-~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~  160 (213)
T 4edh_A           84 VIRPAL-ARGAVVLCDRFTDATYAYQGGGR-GL-PEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQ  160 (213)
T ss_dssp             THHHHH-HTTCEEEEESCHHHHHHHTTTTT-CC-CHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTT
T ss_pred             HHHHHH-HCCCEEEECccHhHHHHHhhhcc-CC-CHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccc
Confidence            222233 345677763          3321 11 1111111       1234789999999987       0 111    


Q ss_pred             ----HHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          298 ----AKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       298 ----~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                          ..+++++.|.+....|...-++|+.+. +   +++|.++|.+.|..++.+
T Consensus       161 ~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~-s---~eeV~~~I~~~l~~~l~~  210 (213)
T 4edh_A          161 EDRRFFEAVRQTYLQRAAQAPERYQVLDAGL-P---LAEVQAGLDRLLPNLLER  210 (213)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTTEEEEETTS-C---HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCcEEEEeCCC-C---HHHHHHHHHHHHHHHHHh
Confidence                122333334333333332235566553 3   569999999999987753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.70  E-value=1.1e-07  Score=89.08  Aligned_cols=28  Identities=14%  Similarity=-0.003  Sum_probs=23.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+|+.|+|.|++||||||+++.|++.|+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999993

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.69  E-value=1.1e-07  Score=84.91  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC--CcceechhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~lIE  222 (388)
                      ++..|.|+|++||||||+++.|+..++  +.+++.|.++.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            567899999999999999999999999  99999988653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.68  E-value=2.1e-08  Score=99.45  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcCc-----hhhhhhccCcHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGECD  247 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~s-----I~eif~~~Ge~~FRe~E~~  247 (388)
                      ..|+|+|++||||||+|+.||+.++..+|++|.+              .++..+.+     +.+..+..+...|++.+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~   87 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK   87 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence            4799999999999999999999999999999997              22222221     2333345677789888888


Q ss_pred             HHHHHhcCCCeEEEecCCcccccccHHHHHhhcCCcEEEEE-cCcc
Q 016486          248 VLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS-QTEA  292 (388)
Q Consensus       248 vL~~L~~~~~~VVStGGG~~gav~r~enr~~L~~g~VVyLd-~~~e  292 (388)
                      .+..+...+..||.+||+   ..+.    +.|..++.+|++ .+.+
T Consensus        88 ~i~~i~~~g~~~IlvGGt---~ly~----~~l~~~l~~~~~~~d~~  126 (340)
T 3d3q_A           88 YIKDITRRGKVPIIAGGT---GLYI----QSLLYNYAFEDESISED  126 (340)
T ss_dssp             HHHHHHHTTCEEEEECCC---HHHH----HHHHBCSCCC---CCHH
T ss_pred             HHHHHHhCCCcEEEECCh---hhhH----HHHHhcccccCCCCChH
Confidence            888877667788888877   2332    233445557777 6654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.66  E-value=7.9e-08  Score=84.86  Aligned_cols=27  Identities=11%  Similarity=0.087  Sum_probs=24.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++|..|+|+|++||||||+.+.|+..+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            467899999999999999999999876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.62  E-value=2.4e-07  Score=84.79  Aligned_cols=31  Identities=19%  Similarity=0.154  Sum_probs=26.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc--CCccee
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLS  216 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L--G~~fID  216 (388)
                      ++-|+|.|..||||||+++.|++.|  |++++-
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~   34 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM   34 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence            4579999999999999999999999  566554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.62  E-value=1.9e-07  Score=84.36  Aligned_cols=27  Identities=22%  Similarity=0.122  Sum_probs=24.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +|..|+|+|++||||||+++.|++.+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            578899999999999999999999884

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.58  E-value=2.4e-07  Score=86.32  Aligned_cols=33  Identities=9%  Similarity=0.001  Sum_probs=28.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc-CCccee
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS  216 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID  216 (388)
                      .+++.|+|.|++||||||+++.|++.| ++.++.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            356789999999999999999999999 677774

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.57  E-value=6e-07  Score=82.94  Aligned_cols=28  Identities=11%  Similarity=0.062  Sum_probs=25.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      |+|+.|+|.|++||||||+++.|++.|.
T Consensus         1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            1 MRSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             -CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999999999999983

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.54  E-value=1.3e-07  Score=88.33  Aligned_cols=30  Identities=17%  Similarity=-0.129  Sum_probs=26.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..+++.|+|.|++||||||+++.|++.|+.
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346889999999999999999999998754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.53  E-value=1.5e-06  Score=81.61  Aligned_cols=30  Identities=10%  Similarity=0.037  Sum_probs=25.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+++..|+|.|++||||||+++.|++.|+
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445788999999999999999999999984

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.53  E-value=4e-07  Score=82.69  Aligned_cols=31  Identities=19%  Similarity=0.008  Sum_probs=26.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~  217 (388)
                      +-|+|.|..||||||+++.|++.|   |++++-+
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            358999999999999999999998   6766643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.45  E-value=1.1e-06  Score=81.61  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=26.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      +|+.|+|.|++||||||+++.|++.|+.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5889999999999999999999999986

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.43  E-value=8e-07  Score=78.29  Aligned_cols=27  Identities=26%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..|+|+|++||||||+++.|+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            467899999999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.43  E-value=7.9e-07  Score=78.39  Aligned_cols=27  Identities=15%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +|..|.|+|++||||||+.+.|+..+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            578999999999999999999999763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.41  E-value=9.1e-07  Score=81.32  Aligned_cols=31  Identities=13%  Similarity=0.112  Sum_probs=26.7

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ++.++++.|+|+|++|||||||.+.|++.+.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5677899999999999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.37  E-value=4.1e-07  Score=83.42  Aligned_cols=27  Identities=4%  Similarity=-0.037  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..|.|+|++||||||+.+.|+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~   44 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKYK   44 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhcc
Confidence            467899999999999999999999883

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=3.1e-07  Score=78.53  Aligned_cols=93  Identities=13%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (388)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~  158 (388)
                      ..|.|.+...+|.|++.+++.+....+++.|+-..++|.|.+...++....++.+.||..|+|.|..|.+++..+.+.++
T Consensus        21 ~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L~  100 (127)
T 1x5m_A           21 SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCR  100 (127)
T ss_dssp             CSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEEE
T ss_pred             cEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEEE
Confidence            47999999999999999997766688999999999999999876666667788889999999999999999999889999


Q ss_pred             ccCCCCCCchhhh
Q 016486          159 KQDPELKWPDIVE  171 (388)
Q Consensus       159 ~~~~~~~wp~~~~  171 (388)
                      +.+.+..||.+..
T Consensus       101 K~~~~~~W~~L~~  113 (127)
T 1x5m_A          101 KKVENTRWDYLTQ  113 (127)
T ss_dssp             CSSSSCCCSSSBH
T ss_pred             ECCCCCCCCcccc
Confidence            9887668888843

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.27  E-value=1.6e-06  Score=81.97  Aligned_cols=34  Identities=15%  Similarity=0.052  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL  220 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l  220 (388)
                      +.|.|+|.+||||||+++.|++.+|++.+...+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~   35 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP   35 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence            3689999999999999999999999888875443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.24  E-value=4.5e-06  Score=76.99  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc----------ceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~----------fID~D~l  220 (388)
                      ++..|.|+|++||||||+++.|+..+|..          +++.|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~   69 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF   69 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence            56789999999999999999999999866          6777764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.21  E-value=2.3e-06  Score=84.37  Aligned_cols=81  Identities=15%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhH--------------HHHHhcC-----chhhhhhccCcHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVVNGE  245 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--------------IE~~~g~-----sI~eif~~~Ge~~FRe~E  245 (388)
                      ++..|+|+|++||||||++..||+.++..+|++|.+              -++..|.     ++.++-+......|.+.-
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a   81 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA   81 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence            456799999999999999999999999999999987              1222221     122222344556777777


Q ss_pred             HHHHHHHhcCCCeEEEecCC
Q 016486          246 CDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       246 ~~vL~~L~~~~~~VVStGGG  265 (388)
                      ..+++.+.+.+..+|-+||-
T Consensus        82 ~~~i~~i~~~gk~pIlVGGT  101 (322)
T 3exa_A           82 TPLITEIHERGRLPFLVGGT  101 (322)
T ss_dssp             HHHHHHHHHTTCEEEEESCC
T ss_pred             HHHHHHHHhCCCcEEEEcCc
Confidence            77788887777777777764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.11  E-value=1.5e-06  Score=79.12  Aligned_cols=29  Identities=21%  Similarity=0.008  Sum_probs=19.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHH-Hhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELA-VGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LA-k~L  210 (388)
                      ...+|..|.|+|++||||||+.+.|+ ..+
T Consensus        23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34467899999999999999999999 665

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.07  E-value=6.9e-05  Score=68.57  Aligned_cols=30  Identities=7%  Similarity=-0.002  Sum_probs=26.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-CCcc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTP  214 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~f  214 (388)
                      +++.|+|.|++||||||+++.|++.| ++.+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            36789999999999999999999999 5543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.05  E-value=3.5e-06  Score=75.76  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=30.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +|..|.|+|++||||||+++.|+..+.     ..+|..|..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            577899999999999999999999985     566777654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.98  E-value=1.1e-05  Score=79.46  Aligned_cols=80  Identities=19%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH--------------HHHhcC-----chhhhhhccCcHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGEC  246 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI--------------E~~~g~-----sI~eif~~~Ge~~FRe~E~  246 (388)
                      +..|+|+|++||||||++..||+.++..+|+.|.+-              ++..|.     ++.++-+......|.+.-.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~   89 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDAL   89 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHH
Confidence            457999999999999999999999999999999851              222221     1222233445567777667


Q ss_pred             HHHHHHhcCCCeEEEecCC
Q 016486          247 DVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       247 ~vL~~L~~~~~~VVStGGG  265 (388)
                      ..++++...+..+|-+||-
T Consensus        90 ~~i~~i~~~g~~pilVGGT  108 (316)
T 3foz_A           90 AEMADITAAGRIPLLVGGT  108 (316)
T ss_dssp             HHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHHHhCCCcEEEEcCc
Confidence            7788887777777777764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.96  E-value=1.2e-05  Score=72.08  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCc--ceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D~lI  221 (388)
                      ++..|.|+|++||||||+++.|+..+   |..  +++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            46789999999999999999999976   544  44557653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.89  E-value=1.2e-05  Score=81.63  Aligned_cols=79  Identities=10%  Similarity=0.133  Sum_probs=57.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhH--H------------HHHhcC-----chhhhhhccCcHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--L------------ETFAKQ-----TIDSWMLAEGSDSVVNGECD  247 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~l--I------------E~~~g~-----sI~eif~~~Ge~~FRe~E~~  247 (388)
                      ..|+|+|++||||||++..||+.++..+|++|.+  .            ++..|.     ++.++-+......|.+....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~   82 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN   82 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence            4689999999999999999999999999999984  1            111111     11222234455678887788


Q ss_pred             HHHHHhcCCCeEEEecCC
Q 016486          248 VLESLSSHVRAVVATLGG  265 (388)
Q Consensus       248 vL~~L~~~~~~VVStGGG  265 (388)
                      +++.+...+..+|-+||-
T Consensus        83 ~i~~i~~~g~~pilVGGT  100 (409)
T 3eph_A           83 AIEDIHRRGKIPIVVGGT  100 (409)
T ss_dssp             HHHHHHTTTCEEEEECSC
T ss_pred             HHHHHHhcCCCEEEECCh
Confidence            888888777777767763

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=97.80  E-value=9.7e-06  Score=69.47  Aligned_cols=89  Identities=22%  Similarity=0.459  Sum_probs=74.9

Q ss_pred             CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHH
Q 016486           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVIN  156 (388)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~  156 (388)
                      +..|.|+....||++++.++..+...++|+.|+-..++|.|.++  |. ..++ .+.||..|+|.|..|.+.+. .+.+.
T Consensus         7 ~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k--g~-~~~~-~~~L~~~I~~e~s~w~i~~~k~v~i~   82 (131)
T 1wfi_A            7 GPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK--GQ-PPVV-DGELYNEVKVEESSWLIEDGKVVTVH   82 (131)
T ss_dssp             CCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET--TS-CCSB-CSCBSSCBCSTTCEEEEETTTEEEEE
T ss_pred             CCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC--Cc-eEEE-ecccccccccccCEEEEcCCCEEEEE
Confidence            34899999999999999999887778999999999999999886  33 2444 46799999999999999887 57888


Q ss_pred             hhccCCCCCCchhh
Q 016486          157 LKKQDPELKWPDIV  170 (388)
Q Consensus       157 ~~~~~~~~~wp~~~  170 (388)
                      +++...+..||.+.
T Consensus        83 L~K~~~~~~W~~L~   96 (131)
T 1wfi_A           83 LEKINKMEWWNRLV   96 (131)
T ss_dssp             EEBSSSCCCCSCSB
T ss_pred             EEECCCCCCChhhh
Confidence            88887666777774

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=97.79  E-value=9.4e-06  Score=69.00  Aligned_cols=89  Identities=20%  Similarity=0.437  Sum_probs=72.8

Q ss_pred             CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-HHHHh
Q 016486           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-LVINL  157 (388)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-~v~~~  157 (388)
                      ..|.|+....||++++.++.. +...+|+.|+-..++|.|.++..++...+++ +.||..|+|.|..|.+.+.. +.+.+
T Consensus        20 ~~y~W~Qt~~~V~i~I~lp~~-~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~e~S~w~i~~~k~v~i~L   97 (124)
T 1wgv_A           20 ENYTWSQDYTDLEVRVPVPKH-VVKGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCVLVNL   97 (124)
T ss_dssp             SSCEEEEETTEEEEEEECCTT-CCSGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEEEEEE
T ss_pred             CcEEEEEcccEEEEEEEcCCC-CCchhheEEEEEcCEEEEEEEccCCCceEEc-ccccCcCCCcCCEEEEeCCCEEEEEE
Confidence            479999999999999999865 4478999999999999999876445555665 67999999999999998876 77777


Q ss_pred             hccCCCCCCchhh
Q 016486          158 KKQDPELKWPDIV  170 (388)
Q Consensus       158 ~~~~~~~~wp~~~  170 (388)
                      ++... ..||.+.
T Consensus        98 ~K~~~-~~W~~L~  109 (124)
T 1wgv_A           98 SKVGE-YWWNAIL  109 (124)
T ss_dssp             CBSSS-CCCSCSB
T ss_pred             EECCC-CCCcCcc
Confidence            77753 4667663

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.76  E-value=0.00011  Score=66.59  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +.|+|+|++|+|||||.+.|.+.+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            469999999999999999998764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.75  E-value=8e-05  Score=68.90  Aligned_cols=129  Identities=15%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHH-Hh---cCchhhhhh--ccCcHHHHHHHH---------
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLET-FA---KQTIDSWML--AEGSDSVVNGEC---------  246 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~-~~---g~sI~eif~--~~Ge~~FRe~E~---------  246 (388)
                      ....|.|+|++||||+|+++.|.+.+|   ++.+..-+.+.+ .+   |..+.+.+.  .+-| .+|..-.         
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE-~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKE-AFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCS-SHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHH-HHHHHHHHHHHHHHhc
Confidence            346799999999999999999999885   677887776653 22   334333320  0011 1111110         


Q ss_pred             --HH-HHHHhc--CCCeEEEecCCcccccccHHHHHhhcC--C---cEEEEEcCccc---------cccCHHHHHHHHHH
Q 016486          247 --DV-LESLSS--HVRAVVATLGGQQGAAARADKWQHLYA--G---FTVWLSQTEAM---------DENSAKEEARRHVK  307 (388)
Q Consensus       247 --~v-L~~L~~--~~~~VVStGGG~~gav~r~enr~~L~~--g---~VVyLd~~~e~---------D~~d~~e~l~~l~~  307 (388)
                        .+ ++.+..  ....||.+|      +-++...+++++  |   ++|.+.+++++         .+.+..+     .+
T Consensus        89 d~~~~~~~~~~~~~~~~vII~d------vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e-----sE  157 (202)
T 3ch4_B           89 DPGFFCRKIVEGISQPIWLVSD------TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE-----SE  157 (202)
T ss_dssp             CTTTTHHHHSBTCCCSEEEECC------CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH-----HH
T ss_pred             CchHHHHHHHHhcCCCcEEEeC------CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc-----cc
Confidence              00 111111  124677777      666767777764  2   36899988754         0111111     11


Q ss_pred             HhHhccccCcEEEEcCCC
Q 016486          308 DGKLGYSNADVVVKLQGW  325 (388)
Q Consensus       308 eR~~~Y~~AD~vV~~d~~  325 (388)
                      .--..|..+|++|.+++.
T Consensus       158 ~gL~~~~~~D~vI~Ndgt  175 (202)
T 3ch4_B          158 CGLDNFGDFDWVIENHGV  175 (202)
T ss_dssp             HTTTTCCCCSEEEEECSC
T ss_pred             cCCCCCCcCCEEEEeCCC
Confidence            111234569999999974

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.69  E-value=0.00017  Score=64.65  Aligned_cols=26  Identities=15%  Similarity=0.075  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|+.|+|+|++||||||+.+.|+..+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999999865

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=97.68  E-value=1.4e-05  Score=67.97  Aligned_cols=89  Identities=21%  Similarity=0.408  Sum_probs=73.8

Q ss_pred             CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHHH
Q 016486           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVIN  156 (388)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~~  156 (388)
                      ...|.|+....||++++.++..+....+|+.|+-..++|.|.++-   ...++ .+.||..|+|.|..|.+++. .+.+.
T Consensus        16 ~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg---~~~~~-~g~L~~~I~~deS~w~i~~~~~i~i~   91 (121)
T 3qor_A           16 LPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG---QPAII-DGELYNEVKVEESSWLIADGAVVTVH   91 (121)
T ss_dssp             CSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT---SCCSE-EEEBSSCBCGGGCEEEEETTTEEEEE
T ss_pred             CCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC---cceEE-eccccccccccccEEEEcCCCEEEEE
Confidence            347999999999999999998877788999999999999998763   23455 56799999999999999886 67788


Q ss_pred             hhccCCCCCCchhh
Q 016486          157 LKKQDPELKWPDIV  170 (388)
Q Consensus       157 ~~~~~~~~~wp~~~  170 (388)
                      +++...+..||.+.
T Consensus        92 L~K~~~~~~W~~L~  105 (121)
T 3qor_A           92 LEKINKMEWWSRLV  105 (121)
T ss_dssp             EEBSSSSCCCSCSB
T ss_pred             EEECCCCCCChhhh
Confidence            88877766677663

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=97.63  E-value=1.3e-05  Score=71.26  Aligned_cols=88  Identities=19%  Similarity=0.378  Sum_probs=72.2

Q ss_pred             cCCCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhH-H
Q 016486           75 PANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ-L  153 (388)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~-~  153 (388)
                      ++.+..|.|+....||++++.|+..  ..++||.|+-..++|.|.++  |.  ++++ +.||..|+|.|..|.+.+.. +
T Consensus        10 ~~~~~~y~W~Qt~~eV~v~I~lp~~--~~~kdv~V~i~~~~L~v~~k--g~--~~l~-g~L~~~I~~eeS~w~i~~~k~v   82 (157)
T 2rh0_A           10 PCGTPWGQWYQTLEEVFIEVQVPPG--TRAQDIQCGLQSRHVALAVG--GR--EILK-GKLFDSTIADEGTWTLEDRKMV   82 (157)
T ss_dssp             CEECSSEEEEECSSEEEEEEECCTT--CCGGGEEEEECSSEEEEEET--TE--EEEE-EEBSSCBCGGGCEEEEECCCEE
T ss_pred             cCCCCcEEEEecCCEEEEEEECCCC--CcccceEEEEecCEEEEEEC--CE--EEEe-eccccccCccccEEEEcCCcEE
Confidence            3345689999999999999999865  46899999999999999886  43  4555 67999999999999998876 6


Q ss_pred             HHHhhccCC--CCCCchh
Q 016486          154 VINLKKQDP--ELKWPDI  169 (388)
Q Consensus       154 v~~~~~~~~--~~~wp~~  169 (388)
                      .+..++...  +..||.+
T Consensus        83 ~I~L~K~~~~~~~~W~~L  100 (157)
T 2rh0_A           83 RIVLTKTKRDAANCWTSL  100 (157)
T ss_dssp             EEEEEBSSCSTTCCCSEE
T ss_pred             EEEEEEcCCCcCCcChhh
Confidence            777777765  5567776

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.58  E-value=0.00034  Score=64.47  Aligned_cols=28  Identities=14%  Similarity=0.042  Sum_probs=24.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+|..++|+|++||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3688999999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.49  E-value=2.6e-05  Score=74.84  Aligned_cols=37  Identities=14%  Similarity=0.067  Sum_probs=30.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI  221 (388)
                      ++..|.|.|++||||||+++.|++.||     +.+||+|++.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            356799999999999999999999998     7999999986

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.46  E-value=0.0002  Score=65.66  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      +..|+|+|++|+||||+++.+|..++.+|+..+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~   77 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            467999999999999999999999999888765

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.42  E-value=7.6e-05  Score=76.40  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh--HHHH-HhcCchhhhh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLET-FAKQTIDSWM  233 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~--lIE~-~~g~sI~eif  233 (388)
                      ..+.+|+|+|++|+||||+++.||+.++++|+..|.  +.+. ..|.....++
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l  100 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII  100 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence            356789999999999999999999999999998774  3442 4454444443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.35  E-value=0.0008  Score=61.15  Aligned_cols=28  Identities=11%  Similarity=0.051  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+.+.|+..+
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468899999999999999999999876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.34  E-value=0.00034  Score=60.74  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----C--CcceechhHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKELLETF  224 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~lIE~~  224 (388)
                      ++..++|+|++|+||||+++.++..+    |  ..+++..++++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~   82 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL   82 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            47899999999999999999999887    4  4567777776554

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.34  E-value=0.00024  Score=67.60  Aligned_cols=33  Identities=9%  Similarity=0.027  Sum_probs=29.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      +..|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            457888899999999999999999999988764

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=97.24  E-value=0.00012  Score=57.95  Aligned_cols=85  Identities=19%  Similarity=0.344  Sum_probs=71.8

Q ss_pred             ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhc
Q 016486           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK  159 (388)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~  159 (388)
                      .|.|.....+|.+.+.+++.   ..+|+.|+-.+++|.|.+...++..-.++. .||..|.|.+.-|.+.+..+.+.+++
T Consensus         4 ~~~W~Qt~~~V~v~i~~~~v---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~~~~s~~~~~~~~l~i~L~K   79 (92)
T 2xcm_C            4 RHEYYQKPEEVVVTVFAKGI---PKQNVNIDFGEQILSVVIEVPGEDAYYLQP-RLFGKIIPDKCKYEVLSTKIEICLAK   79 (92)
T ss_dssp             EEEEEEETTEEEEEEECCSC---CGGGEEEEECSSBEEEEECCTTSCCEEECC-BBSSCBCGGGCEEEECSSCEEEEEEB
T ss_pred             cccEEeCCCEEEEEEEECCC---ChHHeEEEEECCEEEEEEEcCCCcEEEEee-EcCCccCchhEEEEEECCEEEEEEEc
Confidence            68999999999999998864   468999999999999998765555555555 79999999999999988888888888


Q ss_pred             cCCCCCCchh
Q 016486          160 QDPELKWPDI  169 (388)
Q Consensus       160 ~~~~~~wp~~  169 (388)
                      .+.+ .||.+
T Consensus        80 ~~~~-~W~~L   88 (92)
T 2xcm_C           80 ADII-TWASL   88 (92)
T ss_dssp             SSSC-CCSCS
T ss_pred             CCCC-cchhc
Confidence            8775 88876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.20  E-value=0.00021  Score=69.37  Aligned_cols=34  Identities=21%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+.+|+|.|++|+|||++++.||+.++.+|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            4678999999999999999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.16  E-value=0.00039  Score=66.04  Aligned_cols=42  Identities=19%  Similarity=0.151  Sum_probs=34.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK  226 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g  226 (388)
                      .+..|+|.|++|+|||++++.+|..++.+|+..+  ++..+..|
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g   91 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG   91 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence            4678999999999999999999999999887654  55554444

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.14  E-value=0.00028  Score=64.07  Aligned_cols=33  Identities=15%  Similarity=0.050  Sum_probs=29.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+..|+|.|++|+|||++++.+|+.++.+|+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            457899999999999999999999999888754

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=97.14  E-value=0.00021  Score=59.20  Aligned_cols=87  Identities=16%  Similarity=0.329  Sum_probs=73.2

Q ss_pred             CceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486           79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (388)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~  158 (388)
                      -.|.|.....+|.+.+.+++.   ..+|+.|+-.+++|.|.+...++..-.++. .||..|.|.+.-|.+.+..+.+.++
T Consensus        10 ~~~~W~Qt~~~V~v~i~l~~v---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~~e~s~~~~~~~~l~i~L~   85 (114)
T 1rl1_A           10 IKYDWYQTESQVVITLMIKNV---QKNDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPIIPEQSTFKVLSTKIEIKLK   85 (114)
T ss_dssp             CCEEEEECSSEEEEEECCCSC---CGGGEEEECSSSCEEEEEECTTSSEEEEEE-CBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred             CCccEEeCCCEEEEEEEeCCC---CHHHCEEEEEcCEEEEEEEeCCCcEEEEEe-eCCCcCCccccEEEEECCEEEEEEE
Confidence            469999999999999999953   568999999999999998766555555555 7999999999999998888888888


Q ss_pred             ccCCCCCCchhh
Q 016486          159 KQDPELKWPDIV  170 (388)
Q Consensus       159 ~~~~~~~wp~~~  170 (388)
                      +.+.+ .||.+.
T Consensus        86 K~~~~-~W~~L~   96 (114)
T 1rl1_A           86 KPEAV-RWEKLE   96 (114)
T ss_dssp             CSSCC-CCSSSB
T ss_pred             cCCCC-cCcccc
Confidence            88775 788774

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=97.13  E-value=5.2e-05  Score=65.03  Aligned_cols=85  Identities=19%  Similarity=0.431  Sum_probs=68.3

Q ss_pred             CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHh
Q 016486           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL  157 (388)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~  157 (388)
                      +..|.|+....+|.+++.++..  ...+|+.|+-..++|.|.++  |..  +++ +.||..|+|.|..|.+.+..+.+.+
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~--~~~kdv~V~i~~~~l~v~~~--g~~--~~~-~~L~~~I~~e~S~w~i~~~kv~i~L   76 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGD--ADSSAIKIRMVGKKICVKNQ--GEI--VID-GELLHEVDVSSLWWVINGDVVDVNV   76 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC-----CCSCEEEEEETTEEEEEET--TEE--EEE-EEBSSCEEEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEecCCEEEEEEECCCC--CCccceEEEEECCEEEEEEC--CEe--eEc-cccccccccccCEEEEeCCEEEEEE
Confidence            3589999999999999999755  46899999999999999885  443  444 7799999999999999888877888


Q ss_pred             hccCCCCCCchhh
Q 016486          158 KKQDPELKWPDIV  170 (388)
Q Consensus       158 ~~~~~~~~wp~~~  170 (388)
                      ++. .+..||.+.
T Consensus        77 ~K~-~~~~W~~L~   88 (131)
T 2o30_A           77 TKK-RNEWWDSLL   88 (131)
T ss_dssp             EES-SCCCCSCSB
T ss_pred             EEC-CCCCCcccc
Confidence            777 555677774

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.11  E-value=0.00029  Score=68.55  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+.+|+|+|++|+|||++++.||+.++.+|+..|
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            4568999999999999999999999999988765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.05  E-value=0.00036  Score=64.57  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=30.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+..|+|.|++|+|||++++.+|+.++.+++..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            467899999999999999999999999888764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.04  E-value=0.00038  Score=64.96  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=29.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+..|+|.|++|+||||+++.+|+.++.+|+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            367899999999999999999999999888754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.99  E-value=0.00047  Score=63.94  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=29.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+.+|+|.|++|+|||++++.+|+.++.+++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i   81 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            467899999999999999999999999887754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.96  E-value=0.00044  Score=66.35  Aligned_cols=37  Identities=16%  Similarity=0.041  Sum_probs=31.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL  220 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~l  220 (388)
                      -++..|.|+|++||||||+++.|+..++       ..++++|..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            3567899999999999999999999887       667777764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.95  E-value=0.00056  Score=57.65  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+|+|+|++|+|||++++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999997

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.91  E-value=0.00047  Score=63.89  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ...+|+|.|++|+|||++++.+|+.++.+|+..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            346899999999999999999999999998765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.90  E-value=0.00082  Score=58.64  Aligned_cols=36  Identities=14%  Similarity=-0.000  Sum_probs=29.1

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      -+|..+.|+|++||||||+++.+.  .|...++.|.+.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~   42 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR   42 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence            357889999999999999999865  466777777654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.89  E-value=0.00048  Score=58.34  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=24.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+|+|+|++|+|||++++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999998

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.89  E-value=0.00029  Score=62.19  Aligned_cols=25  Identities=12%  Similarity=0.064  Sum_probs=23.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +.|+|+|++||||||+++.|++.|+
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3589999999999999999999985

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.00057  Score=69.59  Aligned_cols=34  Identities=9%  Similarity=0.050  Sum_probs=30.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|+||+|||++++++|..+|++|+..+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~  238 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN  238 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            4577999999999999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.83  E-value=0.00072  Score=57.30  Aligned_cols=31  Identities=13%  Similarity=-0.103  Sum_probs=27.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCcce
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fI  215 (388)
                      .+.+|+|.|.+|+|||++|+.+++..   +.+|+
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            46789999999999999999999987   56665

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.00066  Score=69.28  Aligned_cols=34  Identities=15%  Similarity=0.020  Sum_probs=30.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|+||||||.+|+++|..+|++|+..+
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~  247 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLA  247 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            3678999999999999999999999999998753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.82  E-value=0.00082  Score=61.49  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ..|+|+|++|+||||+++.++..++..++..+
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~   81 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS   81 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            45999999999999999999999988777654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.00068  Score=69.22  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|+||||||++++++|..+|++|+..+
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~  247 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP  247 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            4578999999999999999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.81  E-value=0.00073  Score=64.68  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ....|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~   83 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS   83 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence            3568999999999999999999999999888653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.80  E-value=0.00034  Score=64.34  Aligned_cols=33  Identities=18%  Similarity=0.094  Sum_probs=29.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      +..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~   76 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG   76 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence            456999999999999999999999998887653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.77  E-value=0.00082  Score=63.55  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ..|.|+|++||||||+++.||..++..++..
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~i   75 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANESGLNFISV   75 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            4499999999999999999999999777654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.00074  Score=68.45  Aligned_cols=34  Identities=12%  Similarity=0.080  Sum_probs=30.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|+||+|||.+|+++|..+|++|+..+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~  214 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS  214 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence            3578999999999999999999999999998753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.74  E-value=0.0014  Score=67.54  Aligned_cols=33  Identities=18%  Similarity=0.108  Sum_probs=29.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|+|+|++|+||||+++.+|..++.+|+..+
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is   81 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS   81 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence            466999999999999999999999999998753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.68  E-value=0.00096  Score=65.19  Aligned_cols=33  Identities=21%  Similarity=0.166  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      +..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~  116 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVS  116 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence            467999999999999999999999999887653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.67  E-value=0.0011  Score=62.85  Aligned_cols=34  Identities=12%  Similarity=0.041  Sum_probs=30.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      ..+|+|.|++|+|||++++.+|+.++.+|+..+.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~   88 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAA   88 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence            4679999999999999999999999999877643

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.67  E-value=0.0011  Score=64.67  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=30.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ....|+|.|++|+|||++++.+|+.++.+|+..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            467899999999999999999999999988764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.63  E-value=0.0012  Score=64.78  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=30.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+.+|+|.|++|+|||++++.+|+.++.+|+..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            357899999999999999999999999998865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.62  E-value=0.0013  Score=61.22  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ..|+|+|++|+||||+++.|+..++..++..+
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~  105 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS  105 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence            44999999999999999999999988777654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.62  E-value=0.0012  Score=63.61  Aligned_cols=32  Identities=22%  Similarity=0.128  Sum_probs=28.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-CCccee
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS  216 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID  216 (388)
                      .++.|+|.|++|+|||++++.+|+.+ +.+|+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~   76 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS   76 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence            34789999999999999999999999 777764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.62  E-value=0.0013  Score=66.42  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC--Ccceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D  218 (388)
                      .+.+|+|.|++|+|||++++.+|+.+|  ++|+..+
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~   97 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV   97 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence            457899999999999999999999999  8887755

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.61  E-value=0.001  Score=59.10  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=24.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTP  214 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f  214 (388)
                      +++.|+|++||||||+.+.|+..+++.+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~   28 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence            4689999999999999999999998443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.61  E-value=0.001  Score=58.72  Aligned_cols=37  Identities=8%  Similarity=-0.048  Sum_probs=30.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lI  221 (388)
                      .+.+|+|.|++|+||||+++.+++.++     +.+++.+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            468899999999999999999999875     3456665543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.61  E-value=0.00063  Score=63.57  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=24.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+.+|+|.|++|+|||++++.+|+.++
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999983

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.001  Score=68.68  Aligned_cols=34  Identities=18%  Similarity=0.047  Sum_probs=31.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|+||+|||.+|+++|..++++|+..+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs  275 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI  275 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence            4688999999999999999999999999998753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.60  E-value=0.0013  Score=58.78  Aligned_cols=28  Identities=21%  Similarity=0.160  Sum_probs=24.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      -+|..+.|+|++||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999999998873

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.60  E-value=0.00093  Score=57.67  Aligned_cols=35  Identities=11%  Similarity=0.205  Sum_probs=28.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ++..++|+|++|+||||+++.++..+   |  ..+++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~   74 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS   74 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence            68899999999999999999999987   6  44455443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.58  E-value=0.0022  Score=56.40  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCcc--eechhHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTP--LSTKELLE  222 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~f--ID~D~lIE  222 (388)
                      .+|+|.|++|+||||+++.++..+   +.++  ++..+++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            789999999999999999999987   4443  45554443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.0013  Score=67.39  Aligned_cols=34  Identities=18%  Similarity=0.064  Sum_probs=30.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|+||+|||.+|+++|..++++|+..+
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~  248 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV  248 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence            3578999999999999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.47  E-value=0.0013  Score=61.07  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=32.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      ..++.|+|+|++|+||||++..|+++.+ .+|..|...
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~   68 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD   68 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence            4578899999999999999999999977 889888763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.45  E-value=0.0018  Score=62.50  Aligned_cols=29  Identities=17%  Similarity=0.106  Sum_probs=26.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      .+++|+|++|+||||+++.+|..++..+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~   80 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIH   80 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            67999999999999999999999987653

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.42  E-value=0.0019  Score=66.25  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ...++|.|++|+||||+++.+|+.+|++++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in  109 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN  109 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            468999999999999999999999999988754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.36  E-value=0.0022  Score=60.92  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCcce--echhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPL--STKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fI--D~D~lI  221 (388)
                      .+.+++|.|++|+||||+++.++..+   +.+++  +..++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            35689999999999999999999988   66554  444443

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.31  E-value=0.00097  Score=56.48  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      .+.+|+|.|.+|+|||++++.+++..+ +|+..
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~   57 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSP   57 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECC
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEe
Confidence            457899999999999999999999887 66544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.30  E-value=0.007  Score=61.42  Aligned_cols=32  Identities=16%  Similarity=0.001  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+|+|.|++|+||||+++.+|+.++.+|+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            68999999999999999999999999888754

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.29  E-value=0.0019  Score=61.40  Aligned_cols=31  Identities=19%  Similarity=0.098  Sum_probs=28.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      +.+|+|.|++|+|||++++.+|+.++.+++.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            5789999999999999999999999987754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.26  E-value=0.0021  Score=60.21  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=28.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      ..+|+|.|++|+|||++++.+++.++.+|+.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~   68 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   68 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4689999999999999999999999988764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.23  E-value=0.0031  Score=60.26  Aligned_cols=32  Identities=19%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC--ccee
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY--TPLS  216 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~--~fID  216 (388)
                      .+..++|.|++|+|||++++.+|+.++.  +|+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~  102 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA  102 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCccc
Confidence            3578999999999999999999999984  5543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.21  E-value=0.0029  Score=63.79  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=29.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc-CCccee--chhHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL-GYTPLS--TKELLE  222 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L-G~~fID--~D~lIE  222 (388)
                      ....|+|.|++|+|||++++.+|..+ +.+|+.  +.+++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            45789999999999999999999999 777764  344443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.19  E-value=0.0027  Score=62.15  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC-------CcceechhH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL  220 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~l  220 (388)
                      ..|.|+|++||||||+++.|+..++       ..++..|.+
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            4799999999999999999999986       455778875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.18  E-value=0.0029  Score=55.47  Aligned_cols=27  Identities=19%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..+.|+|++||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            467889999999999999999999987

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.16  E-value=0.0032  Score=59.52  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc------CCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL------GYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L------G~~fID~D  218 (388)
                      .+..|+|+|++|+||||+++.+++.+      ++.++-.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            46789999999999999999999988      76666544

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.15  E-value=0.0038  Score=59.21  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=29.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---------CCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---------GYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---------G~~fID~D  218 (388)
                      .+.+|+|.|++|+||||+++.+++.+         ++.++..+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~   85 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN   85 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            46789999999999999999999988         77665543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.14  E-value=0.0036  Score=59.85  Aligned_cols=33  Identities=9%  Similarity=-0.043  Sum_probs=29.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc-----------CCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL-----------GYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L-----------G~~fID~D  218 (388)
                      +.+|+|.|++|+||||+++.+++.+           ++.++..+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            5689999999999999999999988           87777654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.14  E-value=0.0027  Score=59.18  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|+|+|++|+|||++++.+|+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            479999999999999999999998

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.12  E-value=0.0032  Score=63.85  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceechh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D~  219 (388)
                      ..+.+++|+|++|+|||++++.||+.+          +.+|+..|-
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~  244 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence            356789999999999999999999997          777777664

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.12  E-value=0.005  Score=53.41  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=23.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..++|.|++|+||||+++.+++.++.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47999999999999999999998864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.12  E-value=0.0043  Score=61.96  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      .-++..|.|+|++||||||+++.|+..++..++.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            3467899999999999999999999999877665

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.12  E-value=0.0032  Score=65.31  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ++..+.|+|++|+||||+++.+|..++.+++..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            678999999999999999999999999877654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.11  E-value=0.0049  Score=67.38  Aligned_cols=41  Identities=20%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech--hHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK--ELLETFAK  226 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D--~lIE~~~g  226 (388)
                      .+.|.|.|+||+|||.+|+++|..++.+|+..+  +++.+..|
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG  553 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG  553 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence            467999999999999999999999999999764  44444333

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.11  E-value=0.003  Score=60.65  Aligned_cols=37  Identities=14%  Similarity=0.075  Sum_probs=30.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC-------cce-echhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY-------TPL-STKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~-------~fI-D~D~lI  221 (388)
                      ++..|.|+|++||||||+++.|++.|+.       ..+ ..|.++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            4567999999999999999999998862       344 788764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.11  E-value=0.0032  Score=54.20  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|+|.|++|+|||++++.+++.+
T Consensus        38 ~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           38 IPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3459999999999999999999986

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.03  E-value=0.0031  Score=68.94  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=31.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|++|+|||++++.+|..+|.+|+..+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            4578999999999999999999999999998764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.0042  Score=60.79  Aligned_cols=27  Identities=4%  Similarity=0.112  Sum_probs=25.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -++.+|+|.|++|+|||++++.+++.|
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999999

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.89  E-value=0.0048  Score=63.46  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=30.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ....|+|.|++|+|||++++.+|..++.+|+..+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            4578999999999999999999999999988654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.86  E-value=0.0043  Score=60.08  Aligned_cols=37  Identities=16%  Similarity=0.003  Sum_probs=29.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL  220 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~l  220 (388)
                      -+|..|.|+|++||||||+++.|+..+.       ..++..|..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            3577899999999999999999999773       446666654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.85  E-value=0.0056  Score=56.22  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=27.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC---Ccceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~  217 (388)
                      .+.+|+|.|.+|+|||++++.+++.++   .+|+..
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v   63 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL   63 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence            357899999999999999999999885   455543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.84  E-value=0.0052  Score=54.32  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=24.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..+.|+|++||||||+++.|+..+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999844

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.81  E-value=0.0065  Score=57.34  Aligned_cols=32  Identities=13%  Similarity=0.016  Sum_probs=27.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ..+++.|++|+|||++++.+|+.++.+++..+
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            44666777999999999999999998888754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.78  E-value=0.0051  Score=55.33  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=22.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      |..|.|+|++||||||+.+.|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            4578999999999999999999987

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.78  E-value=0.006  Score=63.14  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=28.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      +..|+|+|++|+||||+++.+|..++.+|+..+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~   96 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   96 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            345999999999999999999999998887653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.77  E-value=0.0044  Score=57.36  Aligned_cols=28  Identities=11%  Similarity=0.061  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468899999999999999999999766

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.75  E-value=0.0056  Score=65.43  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=30.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceechh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE  219 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D~  219 (388)
                      ..+.+++|+|++|+|||++++.||+.+          +..++..|-
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            356789999999999999999999998          888887765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.72  E-value=0.0067  Score=57.79  Aligned_cols=31  Identities=10%  Similarity=-0.121  Sum_probs=26.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc----CCcceech
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL----GYTPLSTK  218 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~D  218 (388)
                      +++|+|++|+||||+++.+++.+    ++.++..+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            89999999999999999999998    55555443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.71  E-value=0.0066  Score=53.39  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|+|++||||||+++.++..+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999998654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.69  E-value=0.0053  Score=56.36  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           27 VKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3367889999999999999999998765

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.58  E-value=0.0083  Score=53.41  Aligned_cols=26  Identities=12%  Similarity=0.055  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++..++++|+||+||||++..++.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999997777654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.57  E-value=0.0095  Score=61.66  Aligned_cols=27  Identities=11%  Similarity=0.119  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +|.+|.|+|++||||||+.+.|+..+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            467799999999999999999988774

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.57  E-value=0.0071  Score=58.81  Aligned_cols=29  Identities=14%  Similarity=0.120  Sum_probs=26.1

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..-+|..+.|+|++||||||+.+.|+..+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            44578999999999999999999999887

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.48  E-value=0.0066  Score=56.25  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+..+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999998765

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=95.46  E-value=0.0033  Score=53.32  Aligned_cols=84  Identities=23%  Similarity=0.359  Sum_probs=68.0

Q ss_pred             ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEcc-CCCcchhhhhhhhhhccCCCCceeecchhHHHHHhh
Q 016486           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK  158 (388)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~  158 (388)
                      .|.|.....+|.|++.+++     .+++.|+-..++|.+.... .++....++. .||..|+|.|.-|.+-+..+.+.++
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~-----~~~~~V~~~~~~l~~~~~~~~~~~~y~~~l-~L~~~I~~e~S~~~v~~~kiei~L~   78 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNEI-DLFHCIDPNDSKHKRTDRSILCCLR   78 (125)
T ss_dssp             CEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEEE-EBSSCEEEEEEEEEECSSCEEEEEE
T ss_pred             ceeEEeCCCEEEEEEEecC-----CCceEEEEECCEEEEEEEeCCCCceEEEEE-EccceeccccCEEEECCCEEEEEEE
Confidence            6999999999999999887     3799999999999998764 2334455555 6999999999999987777778888


Q ss_pred             ccCCCCCCchh
Q 016486          159 KQDPELKWPDI  169 (388)
Q Consensus       159 ~~~~~~~wp~~  169 (388)
                      +.+.+..||.+
T Consensus        79 K~~~~~~W~rL   89 (125)
T 1ejf_A           79 KGESGQSWPRL   89 (125)
T ss_dssp             ESSTTCCCSSS
T ss_pred             ECCCCCCCCce
Confidence            87665567776

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.45  E-value=0.017  Score=55.55  Aligned_cols=44  Identities=11%  Similarity=0.010  Sum_probs=34.0

Q ss_pred             hhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       170 ~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .+.|..+...+....-+..++|.|++|+|||++++.+|+.+...
T Consensus         8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A            8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            45677777555443334569999999999999999999999754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.43  E-value=0.0069  Score=57.04  Aligned_cols=28  Identities=14%  Similarity=0.052  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3367889999999999999999999766

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=95.43  E-value=0.0044  Score=61.16  Aligned_cols=30  Identities=13%  Similarity=-0.015  Sum_probs=26.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .+++.|+|.|+.||||||+++.|++.|+..
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~   34 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASGG   34 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence            356889999999999999999999999753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.42  E-value=0.0086  Score=57.83  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++..|.|+|++||||||+.+.||..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.42  E-value=0.007  Score=57.25  Aligned_cols=28  Identities=14%  Similarity=0.168  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3367889999999999999999999766

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.41  E-value=0.0097  Score=57.15  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC----Ccc--eechhHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG----YTP--LSTKELLETF  224 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG----~~f--ID~D~lIE~~  224 (388)
                      +.+|+|.|++|+|||++++.+|..+.    +++  +...+++.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            57899999999999999999998654    433  5555555443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.41  E-value=0.0085  Score=55.85  Aligned_cols=27  Identities=22%  Similarity=0.169  Sum_probs=24.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .-+|..+.|+|++||||||+.+.|+-.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999999975

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.40  E-value=0.0073  Score=55.98  Aligned_cols=28  Identities=14%  Similarity=0.176  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3367899999999999999999998765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.39  E-value=0.0074  Score=56.52  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           30 VNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3367889999999999999999998766

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.38  E-value=0.0074  Score=56.33  Aligned_cols=28  Identities=18%  Similarity=0.133  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999998876

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.36  E-value=0.0094  Score=55.66  Aligned_cols=34  Identities=9%  Similarity=-0.055  Sum_probs=30.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      +..++|.|++|+||||+.+.+++.+++.+++...
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            4789999999999999999999999877887654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.36  E-value=0.0077  Score=55.43  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999998765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.34  E-value=0.0077  Score=57.43  Aligned_cols=28  Identities=11%  Similarity=0.118  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468899999999999999999998766

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.32  E-value=0.011  Score=53.81  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=32.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      ..|.-|.|+|.+|+||||++..|.++ |+.++.=|...
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~   50 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVID   50 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEE
Confidence            46788999999999999999999986 99888877654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.30  E-value=0.0094  Score=56.14  Aligned_cols=27  Identities=11%  Similarity=0.033  Sum_probs=24.1

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..|.|+|++||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            357789999999999999999998865

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=95.29  E-value=0.0033  Score=54.42  Aligned_cols=87  Identities=10%  Similarity=0.143  Sum_probs=68.9

Q ss_pred             CCceeecCC-CceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCc------------chhhhhhhhhhccCCCCc
Q 016486           78 TSQYEFSDG-SAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSF------------ITLIETNQLFDKIKPTET  144 (388)
Q Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~l~~~i~~~e~  144 (388)
                      .-.|.|... ..+|.|.+.+++   ...+|+.|+-..++|.|.++-.++.            .-.++.+ ||..|+|.|.
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~---v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~-L~~~I~pe~S   94 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKE---ICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVK-LRNLIEPEQC   94 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCS---BCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEE-BSSCEEEEEE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCC---CCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEecc-ccccCCchhC
Confidence            447999998 999999999985   3458899999999999988654432            2233334 9999999999


Q ss_pred             eeecchhHHHHHhhccCCCCCCchh
Q 016486          145 IWYIDEDQLVINLKKQDPELKWPDI  169 (388)
Q Consensus       145 iw~~d~~~~v~~~~~~~~~~~wp~~  169 (388)
                      -|.+.+..+.+.++|.+. ..||.+
T Consensus        95 ~~~v~~~kIeI~L~K~e~-~~W~~L  118 (134)
T 1wh0_A           95 TFCFTASRIDICLRKRQS-QRWGGL  118 (134)
T ss_dssp             EEEECSSEEEEEEEESSS-CCCSCS
T ss_pred             EEEEeCCEEEEEEEECCC-Cccccc
Confidence            999988888888888754 578877

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.29  E-value=0.0081  Score=56.85  Aligned_cols=27  Identities=15%  Similarity=0.121  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            367889999999999999999999766

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.29  E-value=0.0097  Score=56.16  Aligned_cols=27  Identities=15%  Similarity=0.152  Sum_probs=24.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .-+|..+.|+|++||||||+.+.|+-.
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            346788999999999999999999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.28  E-value=0.0076  Score=55.88  Aligned_cols=28  Identities=14%  Similarity=-0.031  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999999999765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.27  E-value=0.0085  Score=54.65  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +|..+.|+|++||||||+.+.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.27  E-value=0.0091  Score=58.22  Aligned_cols=28  Identities=14%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      +..+.|+|++||||||+.+.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5789999999999999999999987654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.25  E-value=0.0097  Score=57.37  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..|.|+|++||||||+.+.||..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.25  E-value=0.0085  Score=56.74  Aligned_cols=28  Identities=29%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999999998876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.24  E-value=0.0087  Score=56.29  Aligned_cols=28  Identities=25%  Similarity=0.190  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999999998765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.24  E-value=0.0083  Score=55.12  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=24.1

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367889999999999999999998765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.15  E-value=0.0094  Score=56.80  Aligned_cols=27  Identities=19%  Similarity=0.035  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            367889999999999999999999766

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.15  E-value=0.012  Score=51.59  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC--Ccceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~D~  219 (388)
                      ..+|..+.|+|++|+||||+++.+|...+  .-|++++.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            44688999999999999999999987433  44666654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.14  E-value=0.0097  Score=56.07  Aligned_cols=28  Identities=11%  Similarity=0.205  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3467899999999999999999998765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.12  E-value=0.0099  Score=55.75  Aligned_cols=28  Identities=18%  Similarity=0.173  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           23 VRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3467889999999999999999998765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.12  E-value=0.01  Score=55.96  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999999998765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.11  E-value=0.012  Score=59.21  Aligned_cols=36  Identities=8%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc-----CCcc--eechhHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTP--LSTKELL  221 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~f--ID~D~lI  221 (388)
                      ..+++|.|++|+||||+++.++..+     +.++  ++...+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5689999999999999999999988     6554  4554443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.03  E-value=0.0081  Score=53.29  Aligned_cols=24  Identities=17%  Similarity=0.134  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..|.|+|.+||||||+.+.|+..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999886

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.02  E-value=0.014  Score=52.06  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=24.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|..+.|+|++|+||||+++.++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            346789999999999999999999983

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.01  E-value=0.012  Score=62.52  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      +++|+|++|+|||++++.||+.++.+|+..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i  519 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence            799999999999999999999999877644

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.96  E-value=0.013  Score=57.34  Aligned_cols=27  Identities=26%  Similarity=0.124  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..|.|+|++||||||+.+.||..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.96  E-value=0.014  Score=58.11  Aligned_cols=27  Identities=22%  Similarity=0.103  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.++||-.+
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            357889999999999999999999866

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.96  E-value=0.012  Score=55.28  Aligned_cols=28  Identities=18%  Similarity=0.027  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3367889999999999999999998765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=94.95  E-value=0.012  Score=54.89  Aligned_cols=31  Identities=6%  Similarity=0.073  Sum_probs=26.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      +.+|+|.|++|+||||++..||+.++-..+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            4579999999999999999999998755444

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.95  E-value=0.0082  Score=56.70  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=23.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+|+|.|++|+|||++++.+++.++
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34699999999999999999999987

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.94  E-value=0.017  Score=54.85  Aligned_cols=23  Identities=13%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +++|+|++|+||||+++.+|..+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999965

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.93  E-value=0.016  Score=55.63  Aligned_cols=35  Identities=17%  Similarity=0.126  Sum_probs=28.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----C--Ccceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~  219 (388)
                      ++..|.|+|+.|+||||++..||..+    |  .-+++.|.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            57799999999999999999998665    4  35677775

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.91  E-value=0.015  Score=54.90  Aligned_cols=25  Identities=16%  Similarity=0.178  Sum_probs=22.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+++|.|++|+||||+++.+|+.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.89  E-value=0.017  Score=54.11  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=31.8

Q ss_pred             CCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          162 PELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       162 ~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .++++|++ ...+.+.   ....+|..++|+|.+|+||||+++.+|..+
T Consensus        15 ~~i~t~g~-~~Ld~i~---~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           15 VGLLFSGC-TGINDKT---LGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CCBCCCSC-TTHHHHH---CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcccCCH-HHHHHHh---cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44555544 2233333   345578899999999999999999888765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.86  E-value=0.013  Score=63.59  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D  218 (388)
                      .+.+++|+|++|+||||+++.||+.+          +.+++..|
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  233 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ  233 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence            45679999999999999999999998          77666543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.83  E-value=0.015  Score=54.11  Aligned_cols=24  Identities=13%  Similarity=-0.029  Sum_probs=22.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.|+|++||||||+.+.|+-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            678999999999999999999765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.81  E-value=0.018  Score=51.45  Aligned_cols=24  Identities=8%  Similarity=0.001  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..|.|+|++||||||+...|+..|
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999999876

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.76  E-value=0.024  Score=48.82  Aligned_cols=26  Identities=15%  Similarity=0.115  Sum_probs=23.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ...+|+|.+||||||+.++|+-.|+-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            37889999999999999999988863

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=94.76  E-value=0.016  Score=53.53  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +++|.|++|+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            59999999999999999999987

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.75  E-value=0.016  Score=58.13  Aligned_cols=27  Identities=19%  Similarity=0.058  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            367889999999999999999999776

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.74  E-value=0.03  Score=53.20  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      +..++|.|++|+||||+++.+|+.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999999975

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.73  E-value=0.016  Score=57.39  Aligned_cols=27  Identities=19%  Similarity=0.053  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            367889999999999999999999765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.72  E-value=0.015  Score=57.11  Aligned_cols=28  Identities=11%  Similarity=0.108  Sum_probs=25.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+|..|.|+|++||||||+.+.|+..+.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3578999999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.71  E-value=0.019  Score=50.53  Aligned_cols=45  Identities=9%  Similarity=-0.008  Sum_probs=21.4

Q ss_pred             CCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          165 KWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       165 ~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .||+-...|-.-........+..+|+|+|.+|+||||+...+...
T Consensus         9 ~~~~~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A            9 HHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ---------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccCCcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            355544444333322333445678999999999999999888753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.70  E-value=0.017  Score=57.34  Aligned_cols=27  Identities=26%  Similarity=0.121  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            367889999999999999999999765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.69  E-value=0.017  Score=55.21  Aligned_cols=24  Identities=13%  Similarity=0.162  Sum_probs=22.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +++|.|++|+||||+++.+|+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999999999873

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.69  E-value=0.017  Score=55.91  Aligned_cols=35  Identities=17%  Similarity=0.097  Sum_probs=28.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ++..|.|+|++||||||+++.||..+   |  ..++|.|.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            35689999999999999999999876   2  44566664

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.68  E-value=0.017  Score=57.36  Aligned_cols=27  Identities=19%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            357889999999999999999999765

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=94.68  E-value=0.0081  Score=60.31  Aligned_cols=29  Identities=7%  Similarity=-0.056  Sum_probs=23.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+++.|+|.|+.||||||+++.|++.|.
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34667899999999999999999999885

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=94.65  E-value=0.017  Score=57.33  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..|.|+|++||||||+.+.||..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            46789999999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.63  E-value=0.031  Score=58.09  Aligned_cols=26  Identities=19%  Similarity=0.098  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..|.|+|++||||||+.+.||..+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHh
Confidence            46789999999999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.62  E-value=0.017  Score=55.52  Aligned_cols=28  Identities=11%  Similarity=0.216  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468899999999999999999998765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.61  E-value=0.018  Score=57.37  Aligned_cols=27  Identities=19%  Similarity=0.022  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            357889999999999999999999765

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=94.61  E-value=0.0073  Score=59.53  Aligned_cols=27  Identities=7%  Similarity=-0.066  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +++.|+|.|+.||||||+++.|++.|+
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            457899999999999999999999885

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.58  E-value=0.019  Score=57.20  Aligned_cols=27  Identities=19%  Similarity=0.030  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            367889999999999999999999765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.58  E-value=0.029  Score=49.60  Aligned_cols=26  Identities=12%  Similarity=0.000  Sum_probs=23.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +...|+|+|.+|+||||+...|+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999876

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.56  E-value=0.022  Score=52.85  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=22.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+++|.|++|+||||+++.+++.+.
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhc
Confidence            4699999999999999999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.54  E-value=0.023  Score=52.86  Aligned_cols=27  Identities=30%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..+.|+|++||||||+++.++..+
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999888643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.53  E-value=0.015  Score=57.48  Aligned_cols=27  Identities=11%  Similarity=-0.031  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            367889999999999999999999765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.53  E-value=0.012  Score=56.99  Aligned_cols=26  Identities=23%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            57889999999999999999998876

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.53  E-value=0.021  Score=54.55  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=26.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID  216 (388)
                      .+.+|+|+|.+|+|||++++.+++.+   +.+|+.
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~   58 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVT   58 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCE
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEE
Confidence            45789999999999999999999965   455543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.52  E-value=0.017  Score=54.67  Aligned_cols=25  Identities=12%  Similarity=0.232  Sum_probs=23.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      |..+.|+|++||||||+.+.|+-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            7889999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=94.50  E-value=0.025  Score=50.36  Aligned_cols=37  Identities=8%  Similarity=0.021  Sum_probs=28.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~  219 (388)
                      ..+|..+.|+|++|+||||++..++..+     +.-|++++.
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            3468899999999999999988776543     355666654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.48  E-value=0.022  Score=46.55  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+++|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.46  E-value=0.021  Score=57.21  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.++||-.+
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3467899999999999999999999654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.46  E-value=0.2  Score=43.40  Aligned_cols=88  Identities=13%  Similarity=0.137  Sum_probs=49.0

Q ss_pred             eEEEE-ecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhcCchhhhhhc---------cCcHHHHHHHHHHHHHH
Q 016486          188 SIFLV-GDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLA---------EGSDSVVNGECDVLESL  252 (388)
Q Consensus       188 ~IvLI-G~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g~sI~eif~~---------~Ge~~FRe~E~~vL~~L  252 (388)
                      .|.++ +-.|+||||++..||..|.     .-++|+|.-      .+...++..         .+.+.++    ++++.+
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~------~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~l   72 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ------MSLTNWSKAGKAAFDVFTAASEKDV----YGIRKD   72 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT------CHHHHHHTTSCCSSEEEECCSHHHH----HTHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC------CCHHHHHhcCCCCCcEEecCcHHHH----HHHHHh
Confidence            45555 5678999999999988773     567888832      222233221         1223332    455566


Q ss_pred             hcCCC-eEEEecCCcccccccHHHHHhhcC-CcEEEEEcC
Q 016486          253 SSHVR-AVVATLGGQQGAAARADKWQHLYA-GFTVWLSQT  290 (388)
Q Consensus       253 ~~~~~-~VVStGGG~~gav~r~enr~~L~~-g~VVyLd~~  290 (388)
                      ....+ +||-|+++     ........+.. +.+|..-.+
T Consensus        73 ~~~yD~viiD~~~~-----~~~~~~~~l~~ad~viiv~~~  107 (206)
T 4dzz_A           73 LADYDFAIVDGAGS-----LSVITSAAVMVSDLVIIPVTP  107 (206)
T ss_dssp             TTTSSEEEEECCSS-----SSHHHHHHHHHCSEEEEEECS
T ss_pred             cCCCCEEEEECCCC-----CCHHHHHHHHHCCEEEEEecC
Confidence            55444 55566665     24555555554 555544433

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.45  E-value=0.024  Score=60.32  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.+++|+|++|+|||++++.||+.+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999999987

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.35  E-value=0.023  Score=56.75  Aligned_cols=27  Identities=11%  Similarity=-0.020  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            367889999999999999999999766

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.33  E-value=0.038  Score=51.15  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=21.8

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +++|.|++|+||||+++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999987

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.30  E-value=0.017  Score=59.71  Aligned_cols=29  Identities=28%  Similarity=0.437  Sum_probs=25.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ...+.+|+|+|++|+|||++++.||..++
T Consensus        38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            34568999999999999999999999885

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.30  E-value=0.026  Score=50.19  Aligned_cols=24  Identities=13%  Similarity=0.003  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..|.|+|++||||||+.+.|...+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            568999999999999999998864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.28  E-value=0.028  Score=49.51  Aligned_cols=27  Identities=7%  Similarity=0.067  Sum_probs=23.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +...|+|+|.+|+||||+...|+..+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            346899999999999999999998763

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.27  E-value=0.026  Score=58.98  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=26.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .+..+.|+|++|+||||+++.+|..+...
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            46799999999999999999999998644

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.25  E-value=0.022  Score=48.40  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=22.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ++...|+|+|.+|+||||+...|...
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999863

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.24  E-value=0.023  Score=47.98  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ...|+|+|.+|+||||+...|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.22  E-value=0.015  Score=57.40  Aligned_cols=27  Identities=15%  Similarity=-0.032  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.||-.+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            357889999999999999999999765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.22  E-value=0.032  Score=46.88  Aligned_cols=28  Identities=11%  Similarity=0.045  Sum_probs=22.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+..+|+|+|.+|+||||+...+...
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3445678999999999999999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.21  E-value=0.026  Score=57.68  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc----C-C-cceech
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL----G-Y-TPLSTK  218 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G-~-~fID~D  218 (388)
                      -+|..+.|+|++||||||+.|.|+..+    | - -++|+|
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~  176 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD  176 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence            368899999999999999999999876    5 4 566664

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.20  E-value=0.026  Score=46.29  Aligned_cols=25  Identities=8%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999888764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.15  E-value=0.027  Score=46.23  Aligned_cols=25  Identities=12%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4468999999999999999988864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.14  E-value=0.052  Score=50.60  Aligned_cols=32  Identities=9%  Similarity=-0.007  Sum_probs=26.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC--cceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY--TPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~--~fID~D  218 (388)
                      ..++|.|++|+||||+.+.+++.++.  .++++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            58999999999999999999998764  455544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.14  E-value=0.033  Score=53.28  Aligned_cols=30  Identities=23%  Similarity=0.279  Sum_probs=25.7

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ...+.+..+.|+|++|+||||+.+.|+ .+.
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            355678899999999999999999999 543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.13  E-value=0.025  Score=55.84  Aligned_cols=26  Identities=12%  Similarity=0.063  Sum_probs=23.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++..|.|+|++||||||+.+.|+..+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            46789999999999999999999875

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.09  E-value=0.038  Score=49.92  Aligned_cols=27  Identities=11%  Similarity=-0.035  Sum_probs=24.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|+-++++|+||+||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            357789999999999999999998887

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.07  E-value=0.03  Score=47.93  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ++..|+|+|.+|+||||+...|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.04  E-value=0.03  Score=52.98  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|.|+|++||||||+.+.|+..+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.03  E-value=0.032  Score=48.53  Aligned_cols=24  Identities=17%  Similarity=0.201  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..|+|+|.+||||||+.+.|+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            479999999999999999998754

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.02  E-value=0.016  Score=57.41  Aligned_cols=31  Identities=16%  Similarity=-0.133  Sum_probs=27.5

Q ss_pred             ccCCCeEEEEecCCCchHHHH-HHHHHhcCCc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVA-LELAVGLGYT  213 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVG-r~LAk~LG~~  213 (388)
                      ..+++.|+|-|..||||||+. +.|++.|+..
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            346789999999999999999 9999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.01  E-value=0.033  Score=50.49  Aligned_cols=35  Identities=11%  Similarity=0.136  Sum_probs=28.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc--C--Ccceech
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL--G--YTPLSTK  218 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L--G--~~fID~D  218 (388)
                      .+...++++|..|+||||++..||..|  |  ...+|.|
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            345678999999999999999999766  3  3457766

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=93.86  E-value=0.034  Score=59.41  Aligned_cols=29  Identities=17%  Similarity=0.219  Sum_probs=25.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L---G~~fID  216 (388)
                      +++|+|++|+|||++++.||+.+   +.+|+-
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~  554 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIR  554 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence            69999999999999999999998   455543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.86  E-value=0.04  Score=53.95  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      .|..|.|+|.+|+||||++..|.++ |+.++.-|...
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~  178 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE  178 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence            5889999999999999999999887 99988666553

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=93.83  E-value=0.027  Score=55.63  Aligned_cols=33  Identities=12%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC--Ccceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG--~~fID~  217 (388)
                      ++..++|.|++|+||||++..+|...|  ..|+++
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            466789999999999999999998755  458888

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.80  E-value=0.036  Score=48.27  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+||||+.+.|+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.79  E-value=0.035  Score=45.78  Aligned_cols=24  Identities=8%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999988763

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=93.78  E-value=0.024  Score=55.12  Aligned_cols=27  Identities=7%  Similarity=0.108  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .|..|.|+|++||||||+.+.|+..+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            467899999999999999999998763

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.76  E-value=0.037  Score=51.33  Aligned_cols=26  Identities=15%  Similarity=0.045  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..++++|.||+||||.+..++.++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            57789999999999999999888877

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.75  E-value=0.091  Score=53.71  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~l  220 (388)
                      ++..|+++|++|+||||++..||..|   |  .-++++|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            36789999999999999999999866   3  345777754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=93.74  E-value=0.032  Score=50.43  Aligned_cols=28  Identities=18%  Similarity=0.157  Sum_probs=24.2

Q ss_pred             EEEEecCCCchHHHHHHHHHhcCC--cceec
Q 016486          189 IFLVGDSTEVNEKVALELAVGLGY--TPLST  217 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG~--~fID~  217 (388)
                      |+++|.+||||||+|..||.. |.  -|+++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999987 74  36666

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.73  E-value=0.021  Score=49.75  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      -++..|.|+|.+||||||+.+.|+.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999998764

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=93.70  E-value=0.016  Score=49.84  Aligned_cols=85  Identities=14%  Similarity=0.302  Sum_probs=63.9

Q ss_pred             ceeecCCCce-------EEEEEccCCcccccccceeeccCCCeEEEEEccCC------CcchhhhhhhhhhccCCCCcee
Q 016486           80 QYEFSDGSAE-------IELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSG------SFITLIETNQLFDKIKPTETIW  146 (388)
Q Consensus        80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~~~i~~~e~iw  146 (388)
                      .|.|...+++       |.|++.+++.     +++.|+...++|.+.+...+      +..-.++. .||..|.|-+.-|
T Consensus         8 ~~~W~Q~~~~~~~~k~~V~ltI~~~~~-----~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l-~L~~~Idpe~S~~   81 (134)
T 2cg9_X            8 QVAWAQRSSTTDPERNYVLITVSIADC-----DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHI-DLYKEIIPEKTMH   81 (134)
T ss_dssp             ---CBCCCEEECCCSSEEEEECCCSSE-----ESCCCCBCSSEEEECCEEC-------CEEBCEEE-ECSSCCCSSSEEE
T ss_pred             CEEEEeCCCCcCCcCCEEEEEEEecCC-----CceEEEEECCEEEEEEecccccCCccCceEEEEE-EChhhccccccEE
Confidence            6888888888       8898888773     59999999999999876554      23445555 6999999999999


Q ss_pred             ecchhH-HHHHhhccCC-CCCCchhh
Q 016486          147 YIDEDQ-LVINLKKQDP-ELKWPDIV  170 (388)
Q Consensus       147 ~~d~~~-~v~~~~~~~~-~~~wp~~~  170 (388)
                      .+-+.. +.+.+++.+. +..||.+.
T Consensus        82 ~v~~~~~vei~L~K~~~~~~~W~rL~  107 (134)
T 2cg9_X           82 KVANGQHYFLKLYKKDLESEYWPRLT  107 (134)
T ss_dssp             EECCC--CEEEEEECSSSSCCCSCSS
T ss_pred             EECCCEEEEEEEEECCCCCCCCCcee
Confidence            987777 7788888774 56788873

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.63  E-value=0.024  Score=57.43  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc-----CCcceechh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE  219 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~  219 (388)
                      +..|.|+|.+|+||||++..||..+     ..-++|+|-
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            3589999999999999999999886     366778773

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.62  E-value=0.04  Score=45.21  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.53  E-value=0.045  Score=45.10  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            57999999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.53  E-value=0.039  Score=57.26  Aligned_cols=27  Identities=22%  Similarity=0.164  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.++|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999765

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.52  E-value=0.039  Score=54.47  Aligned_cols=26  Identities=8%  Similarity=0.037  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++..|.|+|++||||||+.+.|+..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34579999999999999999998876

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.51  E-value=0.04  Score=53.51  Aligned_cols=35  Identities=14%  Similarity=0.071  Sum_probs=28.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ++..|.|+|++|+||||++..||..+   |  .-++|.|-
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45689999999999999999999876   2  44667764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=93.44  E-value=0.043  Score=53.68  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=24.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|..+.|+|++||||||+++.++...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            367889999999999999999999876

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.41  E-value=0.12  Score=49.42  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ...|+|.|++|+|||.+++.||..+++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            347999999999999999999997643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.39  E-value=0.036  Score=47.33  Aligned_cols=27  Identities=11%  Similarity=0.175  Sum_probs=22.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .++..+|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcC
Confidence            344568999999999999999999865

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.38  E-value=0.043  Score=53.46  Aligned_cols=34  Identities=15%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D  218 (388)
                      +...|.|+|.+|+||||+...|+..+   |  ..++|.|
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            34679999999999999999999876   3  3556666

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.37  E-value=0.035  Score=52.91  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=24.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.+..+.|+|++||||||+.+.|+..+
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence            45578899999999999999999998544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.36  E-value=0.038  Score=47.45  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..|+|+|.+|+||||+.+.|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=93.36  E-value=0.048  Score=52.37  Aligned_cols=24  Identities=8%  Similarity=-0.036  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..++|+|+.||||||+.+.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999999653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.34  E-value=0.27  Score=50.89  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=27.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ...|.|+|.+|+||||+...||..|   |  .-++|.|.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            4589999999999999999999766   4  44577764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.31  E-value=0.058  Score=46.12  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +...|+|+|.+|+||||+...|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999988765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.31  E-value=0.056  Score=45.23  Aligned_cols=24  Identities=4%  Similarity=0.088  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +...|+|+|.+|+||||+...|..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999998865

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.29  E-value=0.038  Score=53.03  Aligned_cols=33  Identities=24%  Similarity=0.137  Sum_probs=28.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D  218 (388)
                      +..|.++|.+|+||||++..||..+   |  .-++|.|
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6789999999999999999999777   3  5577777

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.22  E-value=0.048  Score=52.09  Aligned_cols=34  Identities=24%  Similarity=0.202  Sum_probs=27.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D  218 (388)
                      ++..|.|+|..|+||||+++.||..+   |  .-++|.|
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d  135 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            57789999999999999999999876   2  4456665

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.22  E-value=0.04  Score=45.38  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.18  E-value=0.033  Score=46.92  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ++...|+|+|.+|+||||+...|...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44568999999999999999998874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.18  E-value=0.042  Score=59.68  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID  216 (388)
                      .+++|+|++|+|||++++.||+.+   +.+|+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~  621 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR  621 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEE
Confidence            479999999999999999999998   555544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.16  E-value=0.048  Score=45.78  Aligned_cols=27  Identities=15%  Similarity=0.217  Sum_probs=22.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .++..+|+|+|.+|+||||+...|...
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence            344568999999999999999988864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.16  E-value=0.042  Score=57.12  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=27.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc----CCcceec
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLST  217 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~fID~  217 (388)
                      -+|..+.|+|++||||||+.+.|+..+    |--.+|+
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g  404 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG  404 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence            367899999999999999999999876    3445554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.14  E-value=0.05  Score=52.96  Aligned_cols=27  Identities=11%  Similarity=-0.048  Sum_probs=23.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -++..|.|+|++||||||+.+.|+..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            457789999999999999999999765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=93.14  E-value=0.034  Score=53.41  Aligned_cols=26  Identities=8%  Similarity=0.038  Sum_probs=22.8

Q ss_pred             CCCeEEE--EecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFL--VGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvL--IG~~GSGKSTVGr~LAk~L  210 (388)
                      .+..++|  .|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3567888  8999999999999999876

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.13  E-value=0.086  Score=52.01  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=36.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc-----CCcceec----hhHHHHHhcCchhhh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLST----KELLETFAKQTIDSW  232 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~----D~lIE~~~g~sI~ei  232 (388)
                      ..++..+.|.|.+|+||||++..+|..+     ..-|||+    |....+..|.....+
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l  118 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL  118 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhhe
Confidence            3467899999999999999999888654     3567887    444444455544443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.07  E-value=0.062  Score=54.49  Aligned_cols=30  Identities=13%  Similarity=-0.055  Sum_probs=26.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +.-+|..+.|+|++||||||+.+.|+..+.
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            445789999999999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.05  E-value=0.045  Score=56.89  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=24.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+..+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            367899999999999999999998876

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.02  E-value=0.053  Score=53.89  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=24.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..++|..+.|+|++|+||||+.+.|+..+
T Consensus       211 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          211 EALTGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             HHHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             HhcCCCEEEEECCCCccHHHHHHHHhccc
Confidence            44578899999999999999999998544

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.99  E-value=0.057  Score=45.06  Aligned_cols=25  Identities=8%  Similarity=0.221  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999998875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=92.99  E-value=0.067  Score=52.57  Aligned_cols=29  Identities=14%  Similarity=-0.011  Sum_probs=26.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .-+|..+.|+|++||||||+.+.|+..+.
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34689999999999999999999999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.94  E-value=0.069  Score=46.77  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +..+|+|+|++|+||||+...|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.93  E-value=0.061  Score=44.40  Aligned_cols=24  Identities=13%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999998765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.92  E-value=0.059  Score=44.53  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             CeEEEEecCCCchHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      .+|+|+|.+|+||||+...|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            479999999999999998874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.90  E-value=0.06  Score=44.62  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999998863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.90  E-value=0.061  Score=44.37  Aligned_cols=22  Identities=9%  Similarity=0.135  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999998875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.89  E-value=0.065  Score=44.35  Aligned_cols=23  Identities=13%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            57999999999999999988864

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=92.86  E-value=0.035  Score=58.34  Aligned_cols=29  Identities=10%  Similarity=0.163  Sum_probs=25.8

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      +|+|+|++|+|||++++.+|+.++..++.
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence            89999999999999999999999755443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.85  E-value=0.062  Score=44.71  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            5799999999999999998864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.83  E-value=0.07  Score=46.24  Aligned_cols=25  Identities=12%  Similarity=0.118  Sum_probs=20.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +...|+|+|.+|+||||+...|...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999998863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.78  E-value=0.07  Score=44.18  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999988653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.77  E-value=0.073  Score=43.91  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            47999999999999999988753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.75  E-value=0.069  Score=44.59  Aligned_cols=24  Identities=13%  Similarity=0.122  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999988764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.74  E-value=0.049  Score=55.45  Aligned_cols=35  Identities=23%  Similarity=0.091  Sum_probs=28.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ++..|+|+|++|+||||++..||..|   |  .-++++|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            36789999999999999999999776   3  33577773

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.73  E-value=0.069  Score=45.22  Aligned_cols=26  Identities=8%  Similarity=-0.088  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+|+|+|.+|+||||+.+.|.....
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            35799999999999999988876543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.71  E-value=0.03  Score=54.44  Aligned_cols=29  Identities=7%  Similarity=0.124  Sum_probs=24.6

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ....+|..+.|+|++|+||||+.+.|+..
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence            45667899999999999999999988643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.66  E-value=0.063  Score=46.62  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+..+|+|+|.+|+||||+...|...
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3345568999999999999999998864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.66  E-value=0.064  Score=54.13  Aligned_cols=27  Identities=11%  Similarity=0.033  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ++..|.|+|++||||||+.+.|+..+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            456799999999999999999998874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.63  E-value=0.073  Score=44.46  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=92.60  E-value=0.076  Score=43.69  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999988763

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.58  E-value=0.074  Score=44.77  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998864

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=92.57  E-value=0.34  Score=46.68  Aligned_cols=24  Identities=8%  Similarity=0.272  Sum_probs=19.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -.++.|||+|+   ||+|+.+.|-+..
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~  121 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEY  121 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHC
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhC
Confidence            35678999998   5999999998765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.57  E-value=0.059  Score=44.88  Aligned_cols=25  Identities=4%  Similarity=0.178  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999988753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.55  E-value=0.085  Score=44.99  Aligned_cols=25  Identities=20%  Similarity=0.029  Sum_probs=21.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999988653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.52  E-value=0.077  Score=44.79  Aligned_cols=24  Identities=21%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999998875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.52  E-value=0.078  Score=44.13  Aligned_cols=25  Identities=8%  Similarity=-0.007  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|+|+|.+|+||||+...|...-
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3579999999999999999988653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.51  E-value=0.087  Score=44.99  Aligned_cols=25  Identities=12%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+|+|+|.+|+||||+...|...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            4468999999999999999988763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.49  E-value=0.057  Score=45.38  Aligned_cols=25  Identities=12%  Similarity=0.206  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999988753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.46  E-value=0.082  Score=44.76  Aligned_cols=25  Identities=16%  Similarity=0.044  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+|+|+|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999988655

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.46  E-value=0.084  Score=46.14  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=21.1

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+...|+|+|.+|+||||+...|..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999998753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.44  E-value=0.071  Score=44.48  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.43  E-value=0.054  Score=45.68  Aligned_cols=24  Identities=13%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999988743

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=92.43  E-value=0.084  Score=51.78  Aligned_cols=49  Identities=18%  Similarity=0.121  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc-----CCcceechh----HHHHHhcCchhh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKE----LLETFAKQTIDS  231 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L-----G~~fID~D~----lIE~~~g~sI~e  231 (388)
                      ..+|..+.|.|.+|+||||++..++...     ...|+|++.    ...+..|.....
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~  115 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS  115 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHH
Confidence            3467899999999999999999888654     356777643    233344544443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.42  E-value=0.07  Score=55.35  Aligned_cols=26  Identities=27%  Similarity=0.096  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999999765

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=92.42  E-value=0.055  Score=54.82  Aligned_cols=34  Identities=12%  Similarity=0.008  Sum_probs=27.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc----C--Ccceechh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKE  219 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L----G--~~fID~D~  219 (388)
                      ++.|.++|..|+||||++..||..|    |  .-++|+|-
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4689999999999999999999766    3  34678873

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.41  E-value=0.068  Score=44.71  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            3467999999999999999988753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.40  E-value=0.086  Score=43.43  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +|+|+|.+|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.34  E-value=0.062  Score=55.90  Aligned_cols=27  Identities=19%  Similarity=0.102  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999999999765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.31  E-value=0.084  Score=44.44  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|+|+|.+|+||||+...|...-
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            479999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.30  E-value=0.057  Score=56.13  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            67889999999999999999999865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.27  E-value=0.084  Score=44.62  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=19.8

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +|+|+|.+|+||||+...|...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6999999999999999988754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.26  E-value=0.074  Score=56.22  Aligned_cols=27  Identities=22%  Similarity=0.049  Sum_probs=24.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+-.+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            368899999999999999999999766

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.25  E-value=0.09  Score=44.87  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...|+|+|.+|+||||+...|...
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999999999998874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.25  E-value=0.075  Score=45.89  Aligned_cols=28  Identities=11%  Similarity=0.055  Sum_probs=22.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+..+|+|+|.+|+||||+...+...
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3445568999999999999999877664

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.23  E-value=0.089  Score=45.36  Aligned_cols=25  Identities=4%  Similarity=0.106  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999998864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.22  E-value=0.056  Score=56.51  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+..+
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            357899999999999999999998876

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.21  E-value=0.075  Score=44.89  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34468999999999999999998864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.21  E-value=0.093  Score=44.30  Aligned_cols=23  Identities=4%  Similarity=0.118  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.13  E-value=0.067  Score=56.46  Aligned_cols=27  Identities=22%  Similarity=0.151  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.++|+-.+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            367899999999999999999999765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=92.12  E-value=0.085  Score=54.06  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHH--HHhc----CCcceechh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALEL--AVGL----GYTPLSTKE  219 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~L--Ak~L----G~~fID~D~  219 (388)
                      ...+|..+.|+|++||||||+++.+  +-.+    |--++++.+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            3446899999999999999999983  3332    445566543

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=92.11  E-value=0.078  Score=51.89  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=31.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      ...|.-|.|+|.+|+||||++..|.+ -|+.++.=|...
T Consensus       144 ~~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~  181 (312)
T 1knx_A          144 EVFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE  181 (312)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence            34678899999999999999999876 588888777654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.10  E-value=0.082  Score=45.40  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34468999999999999999988764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.09  E-value=0.067  Score=45.06  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +..+|+|+|.+|+||||+...|.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999998765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.08  E-value=0.082  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..+|+|+|.+|+||||+...|..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.08  E-value=0.088  Score=48.77  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|.|+|.+|+||||+...|...
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999998654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.05  E-value=0.095  Score=43.87  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            357999999999999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.94  E-value=0.096  Score=44.82  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            57999999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.93  E-value=0.1  Score=43.78  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999988754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=91.91  E-value=0.12  Score=48.56  Aligned_cols=33  Identities=15%  Similarity=0.073  Sum_probs=27.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCc--ceechh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE  219 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D~  219 (388)
                      .+|++.|.+|+||||++-.+|..+   |+.  ++|.|.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            479999999999999988888775   655  568874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.91  E-value=0.086  Score=55.65  Aligned_cols=26  Identities=27%  Similarity=0.096  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|..+.|+|++||||||+.+.|+-.+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999999765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=91.83  E-value=0.097  Score=50.69  Aligned_cols=27  Identities=7%  Similarity=-0.038  Sum_probs=23.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -++..|.|+|.+|+||||+...|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998765

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=91.76  E-value=0.13  Score=60.34  Aligned_cols=62  Identities=10%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCc-----ceech----hHHHHHhcCchhhhhhc---cCcHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT-----PLSTK----ELLETFAKQTIDSWMLA---EGSDSVVNGE  245 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~-----fID~D----~lIE~~~g~sI~eif~~---~Ge~~FRe~E  245 (388)
                      .+|+.+.|.|++|||||++|+.++..-...     ||+.+    +++.+..|-.+.+|+.+   .+|..++.+.
T Consensus      1080 p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~ 1153 (1706)
T 3cmw_A         1080 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1153 (1706)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHH
Confidence            367779999999999999999988765444     88864    45556667777777654   1455554433

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=91.70  E-value=0.05  Score=56.55  Aligned_cols=27  Identities=19%  Similarity=0.094  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.|+..+
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            368899999999999999999998766

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=91.65  E-value=0.1  Score=44.65  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +...|+|+|.+|+||||+...|...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999988653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=91.65  E-value=0.11  Score=52.26  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|..+.|+|++||||||+++.|+-.
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            36789999999999999999977643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.62  E-value=0.12  Score=44.32  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|+|+|.+|+||||+...|...-
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3579999999999999999888654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.60  E-value=0.11  Score=44.16  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47999999999999999988864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.60  E-value=0.1  Score=44.21  Aligned_cols=25  Identities=4%  Similarity=0.129  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999988754

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=91.60  E-value=0.44  Score=45.73  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .++.|+|+|+   ||+||.+.|-+.+
T Consensus       104 ~~r~ivl~GP---gK~tl~~~L~~~~  126 (295)
T 1kjw_A          104 YARPIIILGP---TKDRANDDLLSEF  126 (295)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHC
T ss_pred             CCCEEEEECC---CHHHHHHHHHhhC
Confidence            4678999998   7999999998865

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=91.60  E-value=0.16  Score=52.88  Aligned_cols=98  Identities=9%  Similarity=0.084  Sum_probs=52.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC---------------cceechhHHHHHhcCchh-------------hhhhcc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY---------------TPLSTKELLETFAKQTID-------------SWMLAE  236 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~---------------~fID~D~lIE~~~g~sI~-------------eif~~~  236 (388)
                      +-+||.|+|..++||||+...|-..-|.               .+.|.++ +|+.-|.||.             .+++.-
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~-~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMA-MERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChH-HHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            4589999999999999999988644442               3455443 5666666654             234555


Q ss_pred             CcHHHHHHHHHHHHHHhcCCC--eEEEecCCcccccccHHHHHhhcC---CcEEEEE
Q 016486          237 GSDSVVNGECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLYA---GFTVWLS  288 (388)
Q Consensus       237 Ge~~FRe~E~~vL~~L~~~~~--~VVStGGG~~gav~r~enr~~L~~---g~VVyLd  288 (388)
                      |-.-|-.   ++-+.|..-+.  +||+.-.|+  .+.....|+.+..   ..++||.
T Consensus       109 GHvDF~~---Ev~raL~~~DgAvlVvda~~GV--~~qT~~v~~~a~~~~lp~i~fIN  160 (548)
T 3vqt_A          109 GHQDFSE---DTYRVLTAVDSALVVIDAAKGV--EAQTRKLMDVCRMRATPVMTFVN  160 (548)
T ss_dssp             CGGGCSH---HHHHHHHSCSEEEEEEETTTBS--CHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcHHHHH---HHHHHHHhcCceEEEeecCCCc--ccccHHHHHHHHHhCCceEEEEe
Confidence            6655542   34444443333  455666675  3556667776653   3577774

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.59  E-value=0.1  Score=44.42  Aligned_cols=28  Identities=7%  Similarity=0.188  Sum_probs=21.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+..+|+|+|.+|+||||+...|...
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3445678999999999999999988753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.53  E-value=0.054  Score=56.57  Aligned_cols=28  Identities=7%  Similarity=0.125  Sum_probs=24.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      -+|..+.|+|++||||||+.+.|+..+.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            3578999999999999999999987763

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.50  E-value=0.12  Score=44.60  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|+|+|.+|+||||+...|...-
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4579999999999999999887653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.50  E-value=0.12  Score=45.10  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +..+|+|+|.+|+||||+...|....
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35689999999999999999888653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.47  E-value=0.11  Score=47.27  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999988643

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=91.46  E-value=0.11  Score=49.73  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=29.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc---------C--Ccceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL---------G--YTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L---------G--~~fID~D~  219 (388)
                      ..+|..+.|.|.+|+||||++..+|...         +  .-|||++.
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            3467899999999999999999998764         2  45777764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.45  E-value=0.12  Score=44.41  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999988764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.44  E-value=0.095  Score=53.32  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=22.1

Q ss_pred             cCCCe--EEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTS--IFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~--IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -+|..  |.|+|.+||||||+.+.|+..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            35667  999999999999999999865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.43  E-value=0.12  Score=44.05  Aligned_cols=24  Identities=8%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +..+|+|+|.+|+||||+...|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999998874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.42  E-value=0.1  Score=44.56  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999988753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.38  E-value=0.093  Score=44.79  Aligned_cols=27  Identities=7%  Similarity=0.055  Sum_probs=21.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHH
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +......|+|+|.+|+||||+...|..
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            344567899999999999999987754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.33  E-value=0.13  Score=43.71  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999998765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=91.28  E-value=0.12  Score=47.93  Aligned_cols=27  Identities=7%  Similarity=-0.034  Sum_probs=23.5

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+|...+++|.||+||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788899999999999999888876

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.27  E-value=0.12  Score=44.71  Aligned_cols=25  Identities=24%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            4568999999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.26  E-value=0.13  Score=43.99  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=91.26  E-value=0.11  Score=45.13  Aligned_cols=26  Identities=15%  Similarity=0.024  Sum_probs=22.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+...|+|+|.+|+||||+...|...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34468999999999999999988864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.25  E-value=0.12  Score=51.18  Aligned_cols=37  Identities=14%  Similarity=0.231  Sum_probs=28.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ..+|..+.|.|++|+||||++..++..+   |  .-|||+..
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3457889999999999999999988764   3  34777643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.21  E-value=0.11  Score=54.89  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      |..+.|+|++||||||+.+.|+-.+
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCC
Confidence            4678999999999999999999765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.20  E-value=0.12  Score=50.47  Aligned_cols=25  Identities=12%  Similarity=-0.036  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +..|.|+|++||||||+-..|...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=91.15  E-value=0.15  Score=45.26  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..+|..++|.|.+|+|||+++..+|.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45688999999999999999987653

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=91.13  E-value=0.094  Score=46.58  Aligned_cols=32  Identities=13%  Similarity=0.034  Sum_probs=26.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      .|.+.|-.|+||||++..||..|   |  .-.||+|-
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   38 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            47779999999999999999988   3  34577775

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.13  E-value=0.13  Score=44.23  Aligned_cols=25  Identities=4%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            3468999999999999999888764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.10  E-value=0.13  Score=44.45  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=91.10  E-value=0.12  Score=52.50  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=28.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----Ccceechh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE  219 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~  219 (388)
                      ++..|.|+|+.|+||||++..||..+.     .-++|.|-
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence            567899999999999999999998772     45667663

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.09  E-value=0.14  Score=44.35  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.08  E-value=0.14  Score=44.00  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.07  E-value=0.14  Score=44.00  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +..+|+|+|.+|+||||+...|...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4468999999999999999998875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.04  E-value=0.13  Score=44.02  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.00  E-value=0.12  Score=45.06  Aligned_cols=25  Identities=12%  Similarity=0.163  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+|+|+|.+|+||||+...|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            4468999999999999999988764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.98  E-value=0.13  Score=44.28  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+..+|+|+|.+|+||||+...|..
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3456899999999999999988864

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=90.95  E-value=0.14  Score=50.02  Aligned_cols=26  Identities=8%  Similarity=-0.032  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999888764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.94  E-value=0.12  Score=49.39  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      -.|.|+|.+|+||||+.+.|+.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.92  E-value=0.13  Score=44.47  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +..+|+|+|.+|+||||+...|.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.91  E-value=0.15  Score=45.10  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999874

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=90.90  E-value=0.16  Score=49.24  Aligned_cols=37  Identities=16%  Similarity=0.146  Sum_probs=29.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh--c-------C--Ccceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG--L-------G--YTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~--L-------G--~~fID~D~  219 (388)
                      ..+|..+.|.|.+|+||||++..+|..  +       +  .-|||++.
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            346788999999999999999999986  2       2  34777754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.88  E-value=0.15  Score=45.02  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...|...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            357999999999999999988764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=90.78  E-value=0.12  Score=49.04  Aligned_cols=27  Identities=11%  Similarity=0.024  Sum_probs=23.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|..+.|.|.+|+||||++..+|..
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345788999999999999999999864

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=90.76  E-value=0.16  Score=45.92  Aligned_cols=24  Identities=4%  Similarity=0.084  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+.++++|.+|||||+++..++..
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            467889999999999999886544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.74  E-value=0.15  Score=52.24  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=24.8

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..+.|+|++||||||+++.++..+
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34468899999999999999999998654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=90.68  E-value=0.16  Score=52.16  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=21.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ...|.|+||.|.||||+|+.++.
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999996

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.66  E-value=0.15  Score=44.01  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ....|+|+|.+|+||||+...|...
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3568999999999999999988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.63  E-value=0.15  Score=44.31  Aligned_cols=23  Identities=4%  Similarity=0.046  Sum_probs=20.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..+|+|+|.+|+||||+...|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            45799999999999999998863

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.61  E-value=0.14  Score=44.17  Aligned_cols=23  Identities=4%  Similarity=0.112  Sum_probs=19.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..+|+|+|.+|+||||+...|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999998753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.61  E-value=0.16  Score=43.93  Aligned_cols=24  Identities=13%  Similarity=0.101  Sum_probs=20.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +..+|+|+|.+|+||||+.+.|..
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999886654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.60  E-value=0.17  Score=43.32  Aligned_cols=23  Identities=17%  Similarity=0.175  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.53  E-value=0.12  Score=44.10  Aligned_cols=26  Identities=12%  Similarity=0.124  Sum_probs=21.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999887644

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.47  E-value=0.12  Score=45.10  Aligned_cols=23  Identities=22%  Similarity=0.157  Sum_probs=19.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ...|+|+|.+|+||||+...|..
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            35799999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.47  E-value=0.17  Score=43.91  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999988864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=90.42  E-value=0.21  Score=47.78  Aligned_cols=29  Identities=10%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..++|.|.+|+||||++..+|...
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999988654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=90.40  E-value=0.15  Score=52.60  Aligned_cols=24  Identities=13%  Similarity=0.087  Sum_probs=22.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.|+|++||||||+.+.|+-.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            778999999999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.38  E-value=0.14  Score=57.12  Aligned_cols=25  Identities=8%  Similarity=0.003  Sum_probs=22.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      -+|..+.|+|++||||||+.+.|+.
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3688999999999999999999994

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.33  E-value=0.16  Score=44.40  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            4799999999999999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=90.29  E-value=0.17  Score=44.81  Aligned_cols=26  Identities=23%  Similarity=0.211  Sum_probs=21.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            34578999999999999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.27  E-value=0.099  Score=44.11  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=10.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.20  E-value=0.13  Score=43.79  Aligned_cols=23  Identities=9%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +..+|+|+|.+|+||||+...|.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999998773

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.19  E-value=0.19  Score=43.89  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            57999999999999999988754

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=90.09  E-value=0.22  Score=50.02  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=24.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...+|..++|.|.+|+||||++..+|..+
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45578899999999999999999887753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=90.02  E-value=0.19  Score=46.40  Aligned_cols=24  Identities=8%  Similarity=0.145  Sum_probs=21.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +..+|+|+|..|+||||+...|..
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~   58 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIG   58 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=89.99  E-value=0.18  Score=44.37  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +..+|+|+|.+|+||||+...|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346899999999999999998864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=89.98  E-value=0.28  Score=58.54  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=37.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC-----Ccceech----hHHHHHhcCchhhh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTK----ELLETFAKQTIDSW  232 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D----~lIE~~~g~sI~ei  232 (388)
                      .-++++|.|.|++|+|||++|..++....     ..|++.+    .+..+..|..+.++
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l 1482 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNL 1482 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhc
Confidence            44689999999999999999998877653     4588876    44445556555544

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=89.97  E-value=0.18  Score=45.75  Aligned_cols=26  Identities=8%  Similarity=0.222  Sum_probs=21.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ++.-.|+|+|.+|+|||++...+...
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhC
Confidence            45568999999999999999988753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=89.93  E-value=0.084  Score=51.53  Aligned_cols=27  Identities=19%  Similarity=0.179  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      .| .++|+|.+||||||+.++|+-.++.
T Consensus        60 ~G-~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           60 GG-FCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             SS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45 8999999999999999999887763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=89.85  E-value=0.17  Score=44.98  Aligned_cols=24  Identities=13%  Similarity=0.097  Sum_probs=20.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +...|+|+|.+|+||||+...|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999999998864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=89.83  E-value=0.18  Score=50.93  Aligned_cols=25  Identities=8%  Similarity=-0.077  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +..|.|+|.+||||||+.+.|+..+
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            3489999999999999999998743

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=89.77  E-value=0.3  Score=44.64  Aligned_cols=30  Identities=17%  Similarity=0.064  Sum_probs=25.3

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ..+++.+++|+|++|+|||.++..++..++
T Consensus       104 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~  133 (237)
T 2fz4_A          104 RWLVDKRGCIVLPTGSGKTHVAMAAINELS  133 (237)
T ss_dssp             HHTTTSEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             HHHhCCCEEEEeCCCCCHHHHHHHHHHHcC
Confidence            344566799999999999999999988875

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=89.65  E-value=0.21  Score=52.19  Aligned_cols=29  Identities=17%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.+..++|.|++|+||||+.+.++..+
T Consensus       200 ~~~~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          200 QLAGHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             HHTTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34467899999999999999999888755

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.63  E-value=0.2  Score=43.58  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+||||+...+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999988753

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=89.51  E-value=0.19  Score=50.39  Aligned_cols=23  Identities=9%  Similarity=0.068  Sum_probs=21.8

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .++|.|.+|+||||+...+++.|
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999887

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=89.43  E-value=0.13  Score=44.97  Aligned_cols=25  Identities=16%  Similarity=0.054  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ....|+|+|.+|+||||+...|...
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4568999999999999999988665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	2e-11
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	3e-09
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	1e-05
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	9e-04

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           ++   Y ++   AE++L +          KD+ VD     L V +      +      +L
Sbjct: 5   SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVV----DGEL 60

Query: 136 FDKIKPTETIWYI-DEDQLVINLKKQDPELKWPDIVES 172
           ++++K  E+ W I D   + ++L+K +    W  +V S
Sbjct: 61  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTS 98

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 76  ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQL 135
           A    Y +S    ++E+R+ +    +   K + V    + + V +        L+E  +L
Sbjct: 17  AVRENYTWSQDYTDLEVRVPVPK-HVVKGKQVSVALSSSSIRVAMLEENGERVLME-GKL 74

Query: 136 FDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVES 172
             KI    ++W ++  + V+    +  E  W  I+E 
Sbjct: 75  THKINTESSLWSLEPGKCVLVNLSKVGEYWWNAILEG 111

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 81  YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIK 140
           Y++    +++ + L +   +     D+ V+     L+  V         ++   L   I 
Sbjct: 5   YDWYQTESQVVITLMI---KNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLE-LLHPII 60

Query: 141 PTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTA 178
           P ++ + +   ++ I LKK +           WE L  
Sbjct: 61  PEQSTFKVLSTKIEIKLKKPEA--------VRWEKLEG 90

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 9e-04
 Identities = 14/75 (18%), Positives = 30/75 (40%)

Query: 98  SLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINL 157
              ++ SKD+ V+ + + LT            +    LF  I P ++     +  ++  L
Sbjct: 18  EFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCL 77

Query: 158 KKQDPELKWPDIVES 172
           +K +    WP + + 
Sbjct: 78  RKGESGQSWPRLTKE 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.97
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.95
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.83
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.59
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.57
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.56
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.53
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.49
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.49
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.47
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.45
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.43
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.42
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.42
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.41
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.41
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.38
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.36
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.35
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.35
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.3
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.26
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.17
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.97
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.9
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.9
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.77
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.74
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.72
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.72
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.65
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.62
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.6
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.59
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.36
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.24
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	98.16
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.16
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.11
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.06
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.03
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	97.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.97
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.89
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.87
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.65
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.58
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.55
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	97.53
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.51
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.51
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.51
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.47
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.43
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.37
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.35
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.32
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.07
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.06
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.05
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.05
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.0
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.88
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.86
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	96.83
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.75
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.67
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.6
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.58
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.51
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.49
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.47
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.47
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.45
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.21
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.16
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	96.16
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.09
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.02
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.94
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.69
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.66
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.64
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.6
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.59
d1okkd2	207	GTPase domain of the signal recognition particle r	95.57
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.55
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.54
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.46
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.41
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.36
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.33
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.3
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.29
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.23
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.2
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.18
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.12
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.09
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.01
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.9
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.79
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.78
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.75
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.65
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.62
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.59
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.57
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.53
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.46
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.27
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.12
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.07
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.01
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.9
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.84
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.64
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	93.62
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.53
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.5
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.37
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.16
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.13
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.11
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	92.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.82
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.79
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.77
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.75
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.7
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.62
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.49
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.43
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	92.43
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.43
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.38
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.36
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.35
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	92.28
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.26
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.24
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.21
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.2
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.18
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.16
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.11
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.1
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.86
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.84
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.74
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.71
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.62
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.55
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.54
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.54
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.49
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.45
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.41
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.33
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.31
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.27
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.08
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.04
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.04
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.97
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	90.86
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.72
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.53
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.47
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.45
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.44
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	90.44
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.38
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.35
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.32
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.16
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.16
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.16
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.14
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.13
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.07
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	90.07
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.92
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.9
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.85
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.67
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.65
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.64
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.62
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	89.6
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.49
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.43
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	89.32
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.32
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	89.31
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.3
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.3
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.18
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	89.17
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.08
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	89.05
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	88.8
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.77
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.41
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	88.4
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.22
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	88.17
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.0
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.61
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.48
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	87.1
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	86.9
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.9
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.56
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.5
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.44
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	86.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.07
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.92
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.87
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.84
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.52
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.3
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	84.51
d1xpua3	289	Transcription termination factor Rho, ATPase domai	84.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.73
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.79

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.7e-30  Score=225.85  Aligned_cols=149  Identities=21%  Similarity=0.213  Sum_probs=134.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      .+|+|+|+|||||||+|+.||++||++|+|+|++|++.+|+++.+++...|+..||+.|.+++..+....+.|++|||| 
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~-   80 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG-   80 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT-
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhcccccccccccccc-
Confidence            3589999999999999999999999999999999999999999999999999999999999998888777899999999 


Q ss_pred             ccccccHHHHHhhcCCcEEEEEcCccc-------c-------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHH
Q 016486          267 QGAAARADKWQHLYAGFTVWLSQTEAM-------D-------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAK  331 (388)
Q Consensus       267 ~gav~r~enr~~L~~g~VVyLd~~~e~-------D-------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~e  331 (388)
                        .+..+.+|.++..+.+|||++++++       +       ..+..+.+.+++++|.+.|++ ||++|++++.+++   
T Consensus        81 --~~~~~~~~~~l~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~~ad~~Idt~~~s~~---  155 (165)
T d2iyva1          81 --AVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPG---  155 (165)
T ss_dssp             --GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHH---
T ss_pred             --ccccccccccccccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHhhCCEEEECCCCCHH---
Confidence              5889999999999999999999987       1       134567899999999999998 9999999998765   


Q ss_pred             HHHHHHHHHH
Q 016486          332 SVAQASLSAL  341 (388)
Q Consensus       332 eVa~eIl~~L  341 (388)
                      +++++|+++|
T Consensus       156 ei~~~Ii~~L  165 (165)
T d2iyva1         156 AVVRHILSRL  165 (165)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhcC
Confidence            9999998653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.96  E-value=8.6e-29  Score=215.55  Aligned_cols=146  Identities=21%  Similarity=0.255  Sum_probs=126.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      ++|+|+|||||||||+|++||+.||++|+|+|.++++..|+++.+++...|+..||+.|..+++.+......|+++|||.
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~~   80 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   80 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccch
Confidence            46999999999999999999999999999999999999999999999999999999999999999988888999999983


Q ss_pred             ccccccHHHHHhhc-CCcEEEEEcCccc-------cc-c-----CHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcccHH
Q 016486          267 QGAAARADKWQHLY-AGFTVWLSQTEAM-------DE-N-----SAKEEARRHVKDGKLGYSN-ADVVVKLQGWDADHAK  331 (388)
Q Consensus       267 ~gav~r~enr~~L~-~g~VVyLd~~~e~-------D~-~-----d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e~~e  331 (388)
                         +    ++..+. .+++|||++|.++       +. .     .....+++++++|.+.|++ ||++|++++.+++   
T Consensus        81 ---~----~~~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~~~ad~~Idt~~~s~e---  150 (161)
T d1viaa_          81 ---V----NVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNID---  150 (161)
T ss_dssp             ---G----GSTTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEECTTCCHH---
T ss_pred             ---h----hHHHHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHHHhhCCEEEECCCCCHH---
Confidence               3    234444 4999999999987       11 0     1245688899999999987 9999999998765   


Q ss_pred             HHHHHHHHHHH
Q 016486          332 SVAQASLSALK  342 (388)
Q Consensus       332 eVa~eIl~~L~  342 (388)
                      +++++|++.|+
T Consensus       151 ei~~~I~~~i~  161 (161)
T d1viaa_         151 ELLSEIKKVIK  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998773

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.95  E-value=1.7e-28  Score=214.04  Aligned_cols=148  Identities=24%  Similarity=0.303  Sum_probs=129.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ  266 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~  266 (388)
                      +.|+|+|+|||||||+|+.||++||++|+|+|+++++..|+++.++|.+.|++.|+++|.+++..... .+.++++||| 
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~-~~~~~~~~~~-   80 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVAT-PNRVVATGGG-   80 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEECCTT-
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhcc-ccceeccccc-
Confidence            56999999999999999999999999999999999999999999999999999999999999988654 4578888888 


Q ss_pred             ccccccHHHHHhhcC-CcEEEEEcCccc-------c----------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          267 QGAAARADKWQHLYA-GFTVWLSQTEAM-------D----------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       267 ~gav~r~enr~~L~~-g~VVyLd~~~e~-------D----------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                        .+..++++++|+. +++|||+++++.       +          .....+.+++++++|.+.|++ ||++|++++ + 
T Consensus        81 --~~~~~~~~~~l~~~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~~~Id~~~-~-  156 (170)
T d1e6ca_          81 --MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQ-P-  156 (170)
T ss_dssp             --GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTS-C-
T ss_pred             --chhhhHHHHhhhccceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEEEcCCC-C-
Confidence              5899999999986 999999999987       0          112356789999999999988 999998875 3 


Q ss_pred             ccHHHHHHHHHHHHH
Q 016486          328 DHAKSVAQASLSALK  342 (388)
Q Consensus       328 e~~eeVa~eIl~~L~  342 (388)
                        +++++++|++.|+
T Consensus       157 --~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         157 --PAAIVCELMQTMR  169 (170)
T ss_dssp             --HHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHcC
Confidence              4599999988764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.3e-20  Score=156.02  Aligned_cols=151  Identities=24%  Similarity=0.299  Sum_probs=112.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      +++|+|+|+|||||||||+.||++||++|+|.|.......+..........++...+.+..............|+.+...
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            46899999999999999999999999999999999999999887777777777777766655554444444556665554


Q ss_pred             cccccccHHHHHhhcC-CcEEEEEcCccc-------c--------ccCHHHHHHHHHHHhHhcccc-CcEEEEcCCCCcc
Q 016486          266 QQGAAARADKWQHLYA-GFTVWLSQTEAM-------D--------ENSAKEEARRHVKDGKLGYSN-ADVVVKLQGWDAD  328 (388)
Q Consensus       266 ~~gav~r~enr~~L~~-g~VVyLd~~~e~-------D--------~~d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~e  328 (388)
                         ..........+.. +..+|+..++..       +        .......+...+.+|.+.|+. ||++|++++.+++
T Consensus        82 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~d~~Idt~~~s~e  158 (169)
T d1kaga_          82 ---SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK  158 (169)
T ss_dssp             ---GGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----CHH
T ss_pred             ---hhhhhhhhHHhhhcceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccCCEEEECCCCCHH
Confidence               2455544555554 889999888765       0        123467888899999999987 9999999988754


Q ss_pred             cHHHHHHHHHHHHH
Q 016486          329 HAKSVAQASLSALK  342 (388)
Q Consensus       329 ~~eeVa~eIl~~L~  342 (388)
                         +++++|++.|+
T Consensus       159 ---e~v~~Ii~~le  169 (169)
T d1kaga_         159 ---VVANQIIHMLE  169 (169)
T ss_dssp             ---HHHHHHHHHHC
T ss_pred             ---HHHHHHHHHhC
Confidence               99999998874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.62  E-value=4.7e-16  Score=131.68  Aligned_cols=155  Identities=17%  Similarity=0.109  Sum_probs=95.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcCchhhhhhccCcHHHH--HHHHHHHHHHhcCCCeE
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQTIDSWMLAEGSDSVV--NGECDVLESLSSHVRAV  259 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~sI~eif~~~Ge~~FR--e~E~~vL~~L~~~~~~V  259 (388)
                      |.|+.|+|+|+|||||||+|+.||+++|+++++  +|.+.....+.....+.....+....  .....++.........|
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFV   81 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCe
Confidence            568899999999999999999999999999875  56665444433332222111111111  11122333444445677


Q ss_pred             EEecCCcccccccHHHHHhhcC-CcEEEEEcCccc--------c--ccCHHHHHHHHHHHhHhccccCcEEEEcCCCCcc
Q 016486          260 VATLGGQQGAAARADKWQHLYA-GFTVWLSQTEAM--------D--ENSAKEEARRHVKDGKLGYSNADVVVKLQGWDAD  328 (388)
Q Consensus       260 VStGGG~~gav~r~enr~~L~~-g~VVyLd~~~e~--------D--~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e  328 (388)
                      |..+...   ......+..... ..+|||++++++        +  .....+.+..+++.....+..++++|++++.+++
T Consensus        82 i~~~~~~---~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~idt~~~~~e  158 (176)
T d1zp6a1          82 ILDGVVR---PDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTD  158 (176)
T ss_dssp             EECSCCC---TTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEECTTCCTT
T ss_pred             Eeccccc---HHHHHHHHhcccccccccCCCCHHHHHHHHHhCCCccccchhhHHHHHHHHhhcccccCEEEECCCCCHH
Confidence            7776441   222222222222 568999999987        1  1222444555555544445557889999999887


Q ss_pred             cHHHHHHHHHHHHHHh
Q 016486          329 HAKSVAQASLSALKQL  344 (388)
Q Consensus       329 ~~eeVa~eIl~~L~~~  344 (388)
                         +++++|++.|+..
T Consensus       159 ---e~~~~I~~~l~~~  171 (176)
T d1zp6a1         159 ---QALQSAINALQSG  171 (176)
T ss_dssp             ---TTTTTTHHHHHHT
T ss_pred             ---HHHHHHHHHHHcC
Confidence               9999999998754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=2.1e-16  Score=133.92  Aligned_cols=142  Identities=14%  Similarity=0.091  Sum_probs=79.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-CcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHH---HHHhcCCCeE
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVL---ESLSSHVRAV  259 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL---~~L~~~~~~V  259 (388)
                      .++++|+|+|+|||||||+|+.||++|+ +.+++.|++..... ..........+...+......++   ..+......+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   81 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-FYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNH   81 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-CSCC------CCCCCHHHHHHHHHHHHHHHTSSSEE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHh-hhhhHHHhhcccchHHHHHHHHHHHHHhhhhhcccc
Confidence            4688999999999999999999999997 56666666554432 22211111111111111222222   2222222222


Q ss_pred             EEecCCcccccccHHHHHhhc---CCcEEEEEcCccc-------ccc--------CHHHHHHHHHHHhHhccccCcEEEE
Q 016486          260 VATLGGQQGAAARADKWQHLY---AGFTVWLSQTEAM-------DEN--------SAKEEARRHVKDGKLGYSNADVVVK  321 (388)
Q Consensus       260 VStGGG~~gav~r~enr~~L~---~g~VVyLd~~~e~-------D~~--------d~~e~l~~l~~eR~~~Y~~AD~vV~  321 (388)
                      +..+          ..+..+.   ...+|||++++++       ...        ...+.+..+++++...|. ++++|+
T Consensus        82 ~~~~----------~~~~~~~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~i~  150 (174)
T d1y63a_          82 VVDY----------HSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-DDIVLV  150 (174)
T ss_dssp             EEEC----------SCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEE
T ss_pred             cccH----------HHHHHHHHhcCceEEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhc-CCEEEE
Confidence            2222          1223333   2578999999887       111        112345666777888886 567888


Q ss_pred             cCCCCcccHHHHHHHHHHH
Q 016486          322 LQGWDADHAKSVAQASLSA  340 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~  340 (388)
                      +++.+++   ++++.|.+.
T Consensus       151 ~~~~t~e---e~~~~V~~I  166 (174)
T d1y63a_         151 RENDTLE---QMAATVEEI  166 (174)
T ss_dssp             EECSSHH---HHHHHHHHH
T ss_pred             CCCCCHH---HHHHHHHHH
Confidence            8777654   665555443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.5e-15  Score=127.12  Aligned_cols=149  Identities=13%  Similarity=0.036  Sum_probs=91.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhh---hhccCcHHHHHHHHHHHHHHhcCCCeEEE
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSW---MLAEGSDSVVNGECDVLESLSSHVRAVVA  261 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~ei---f~~~Ge~~FRe~E~~vL~~L~~~~~~VVS  261 (388)
                      .++.|+|+|++||||||+|+.||++||+++++.|.+++..........   .........+.++..+...+.....+++.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV   84 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCceEee
Confidence            456789999999999999999999999999999998665443222111   11222233343444343333343444555


Q ss_pred             ecCCcccccccHHHHHhhcC----CcEEEEEcCccc---------cccCHHHHHHHHHHHh-HhccccCc-EEEEcCCCC
Q 016486          262 TLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM---------DENSAKEEARRHVKDG-KLGYSNAD-VVVKLQGWD  326 (388)
Q Consensus       262 tGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~---------D~~d~~e~l~~l~~eR-~~~Y~~AD-~vV~~d~~s  326 (388)
                      +++.      ....+..+++    ..+|||++|+++         +.....+.+...++.. .+.|.+.+ ++|+.++ +
T Consensus        85 ~~~~------~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~e~~~~~e~~~~~id~~~-~  157 (171)
T d1knqa_          85 CSAL------KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQ-P  157 (171)
T ss_dssp             CCCC------SHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEECSS-C
T ss_pred             ccch------HHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCccHHHHHhhHHHhhCCCcccCCEEEEeCCC-C
Confidence            5543      3444444443    368999999887         1112344455555543 34555555 4556553 3


Q ss_pred             cccHHHHHHHHHHHHHH
Q 016486          327 ADHAKSVAQASLSALKQ  343 (388)
Q Consensus       327 ~e~~eeVa~eIl~~L~~  343 (388)
                         +++|+++|+++|++
T Consensus       158 ---~e~v~~~i~~~lk~  171 (171)
T d1knqa_         158 ---LEGVVASTIEVIKK  171 (171)
T ss_dssp             ---HHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHhcC
Confidence               56999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.5e-16  Score=132.41  Aligned_cols=155  Identities=13%  Similarity=0.142  Sum_probs=87.1

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhh--hhhccCcHHHHHHHHHHHHHHhcCCCeE-
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLSSHVRAV-  259 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~e--if~~~Ge~~FRe~E~~vL~~L~~~~~~V-  259 (388)
                      ..+|+.|+|+|+|||||||||+.||++|++.++++|.++..........  .+...+...+.+....++.........+ 
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCI   95 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccc
Confidence            3478899999999999999999999999999999998887766543222  2222233333333445555555544444 


Q ss_pred             EEecCCcccccccHHHHHhhc-CC----cEEEEEcCcccc----c----cCHHHHHHHHHH---HhHhccccCcEEEEcC
Q 016486          260 VATLGGQQGAAARADKWQHLY-AG----FTVWLSQTEAMD----E----NSAKEEARRHVK---DGKLGYSNADVVVKLQ  323 (388)
Q Consensus       260 VStGGG~~gav~r~enr~~L~-~g----~VVyLd~~~e~D----~----~d~~e~l~~l~~---eR~~~Y~~AD~vV~~d  323 (388)
                      +++.++   .......+..+. ..    ..+++..+....    .    ..........+.   .+...|..+|++|+++
T Consensus        96 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~dl~IdT~  172 (195)
T d1x6va3          96 TSFISP---YTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTD  172 (195)
T ss_dssp             EECCCC---CHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCCSSCSEEECTT
T ss_pred             cccccc---hHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCCCCCCEEEECC
Confidence            444444   233333444433 22    233333333220    0    000001111111   1223345689999999


Q ss_pred             CCCcccHHHHHHHHHHHHHH
Q 016486          324 GWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       324 ~~s~e~~eeVa~eIl~~L~~  343 (388)
                      +.+++   +++++|++.|++
T Consensus       173 ~~s~e---e~~~~Il~~l~~  189 (195)
T d1x6va3         173 SCDVN---DCVQQVVELLQE  189 (195)
T ss_dssp             TSCHH---HHHHHHHHHHHH
T ss_pred             CCCHH---HHHHHHHHHHHH
Confidence            88764   999999988874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.53  E-value=6.8e-15  Score=123.76  Aligned_cols=149  Identities=13%  Similarity=0.025  Sum_probs=89.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhcc--CcHHHHHHHHHHHHHHhcCCCeEEEec
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAE--GSDSVVNGECDVLESLSSHVRAVVATL  263 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~--Ge~~FRe~E~~vL~~L~~~~~~VVStG  263 (388)
                      -++|+|+|+|||||||+|+.||++||++++|+|+.+++.....   .+...  ....+.+.....+.........++...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD---GYDEEYDCPILDEDRVVDELDNQMREGGVIVDYH   80 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBC---CCCSSSSCCCBCHHHHHHHHHHHHHHCCEEEECS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhcccc---chhHHhhhhhHHHHHHHHHhhhhhhcCCcccchh
Confidence            4689999999999999999999999999999999988643221   11111  111111222223333322223333322


Q ss_pred             CCcccccccHHHHHhhcCCcEEEEEcCccc-------ccc--------CHHHHHHHHHHHhHhcccc-CcEEEEcCCCCc
Q 016486          264 GGQQGAAARADKWQHLYAGFTVWLSQTEAM-------DEN--------SAKEEARRHVKDGKLGYSN-ADVVVKLQGWDA  327 (388)
Q Consensus       264 GG~~gav~r~enr~~L~~g~VVyLd~~~e~-------D~~--------d~~e~l~~l~~eR~~~Y~~-AD~vV~~d~~s~  327 (388)
                      ..   .+..     ......+|||+++++.       ...        ...+.+...+.+|...|.. +++.++.  .++
T Consensus        81 ~~---~~~~-----~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~i~~~~--~~~  150 (173)
T d1rkba_          81 GC---DFFP-----ERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPS--NKP  150 (173)
T ss_dssp             CC---TTSC-----GGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEEC--SSH
T ss_pred             HH---HHHH-----HhcCCCcceecCCHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHhhhccEEEECC--CCH
Confidence            11   1111     1123789999999877       111        1223455567778888876 5554444  444


Q ss_pred             ccHHHHHHHHHHHHHHhhhc
Q 016486          328 DHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       328 e~~eeVa~eIl~~L~~~~~~  347 (388)
                      +..++.+++|++.++++++.
T Consensus       151 ~~~~~~i~~Ii~~i~~~~k~  170 (173)
T d1rkba_         151 EELENNVDQILKWIEQWIKD  170 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            44667788888888887754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.49  E-value=7e-14  Score=123.86  Aligned_cols=153  Identities=11%  Similarity=0.077  Sum_probs=96.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-c-----hhhhhhcc---CcHHHHHHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-T-----IDSWMLAE---GSDSVVNGECDVLESLSSH  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-s-----I~eif~~~---Ge~~FRe~E~~vL~~L~~~  255 (388)
                      +.++|+|+|+|||||||+|+.||+++|+.+|++++++.+.... +     +.+.+...   ..+.+..+..+.+.... .
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~-~   83 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT-Q   83 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh-h
Confidence            5689999999999999999999999999999999998765422 2     22222211   22344555555554432 2


Q ss_pred             CCeEEEecCCcccccccHHHHHhhcC----CcEEEEEcCccc------cc-cCHHHHH---HHHHHHhHhccccCcEEEE
Q 016486          256 VRAVVATLGGQQGAAARADKWQHLYA----GFTVWLSQTEAM------DE-NSAKEEA---RRHVKDGKLGYSNADVVVK  321 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~L~~----g~VVyLd~~~e~------D~-~d~~e~l---~~l~~eR~~~Y~~AD~vV~  321 (388)
                      .+.|+ .|.     +........|..    +.||||+++.+.      |. +....++   .+.......+|++.+..+.
T Consensus        84 ~~~il-dGf-----Pr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~  157 (189)
T d2ak3a1          84 YNWLL-DGF-----PRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLET  157 (189)
T ss_dssp             SCEEE-ESC-----CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             cCccc-ccc-----cchhhHHHHhhhcCcceEEEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            34554 342     455554555542    679999999876      11 1112222   2222334457877445555


Q ss_pred             cCCCCcccHHHHHHHHHHHHHHhhhc
Q 016486          322 LQGWDADHAKSVAQASLSALKQLIQS  347 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~L~~~~~~  347 (388)
                      +++.++   ++|.++|...|+..+..
T Consensus       158 idg~~~---~eV~~~I~~~i~~~l~~  180 (189)
T d2ak3a1         158 FSGTET---NKIWPHVYAFLQTKLPQ  180 (189)
T ss_dssp             EECSSH---HHHHHHHHHHHHTTSCB
T ss_pred             ECCCCh---HHHHHHHHHHHHHHhhc
Confidence            676554   58999999999876654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.49  E-value=3e-14  Score=119.63  Aligned_cols=147  Identities=15%  Similarity=0.004  Sum_probs=81.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCccee--chhHHHHHhcCchh----hhhhcc-------CcHHHHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS--TKELLETFAKQTID----SWMLAE-------GSDSVVNGECDVLE  250 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID--~D~lIE~~~g~sI~----eif~~~-------Ge~~FRe~E~~vL~  250 (388)
                      |..+.|+|+|+|||||||+|+.||++|+.++++  +|.+..........    ..+...       ....++....++..
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999988765  45554433222111    111110       01123333334444


Q ss_pred             HHhcCCCeEEEecCCcccccccHHHHHhhcC--CcEEEEEcCccccccCHHHHHHHHHHHh--------------Hhccc
Q 016486          251 SLSSHVRAVVATLGGQQGAAARADKWQHLYA--GFTVWLSQTEAMDENSAKEEARRHVKDG--------------KLGYS  314 (388)
Q Consensus       251 ~L~~~~~~VVStGGG~~gav~r~enr~~L~~--g~VVyLd~~~e~D~~d~~e~l~~l~~eR--------------~~~Y~  314 (388)
                      .+......+|...............+..+..  ..+|||++++++        +.++...|              ...+.
T Consensus        81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~--------~~~R~~~R~~~~~~~~~~~~~~~~~~~  152 (178)
T d1qhxa_          81 AMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAV--------AEGRETARGDRVAGMAAKQAYVVHEGV  152 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHH--------HHHHHHHTSSSCTTHHHHHTTGGGTTC
T ss_pred             HHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHH--------HHHHHHhcCCcchhhhhhhhhhhhcCC
Confidence            4554444444333221001112222223322  358999999865        12222222              12234


Q ss_pred             cCcEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          315 NADVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       315 ~AD~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      .+|++|++++.+++   |+|++|.++|
T Consensus       153 ~~dl~IDts~~s~e---e~a~~I~~~v  176 (178)
T d1qhxa_         153 EYDVEVDTTHKESI---ECAWAIAAHV  176 (178)
T ss_dssp             CCSEEEETTSSCHH---HHHHHHHTTC
T ss_pred             CCCEEEECCCCCHH---HHHHHHHHhc
Confidence            58999999998865   9999988653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.7e-13  Score=117.81  Aligned_cols=153  Identities=11%  Similarity=0.154  Sum_probs=89.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC---c----hhhhhhccCcHH----HHHHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---T----IDSWMLAEGSDS----VVNGECDVLESLSS  254 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~---s----I~eif~~~Ge~~----FRe~E~~vL~~L~~  254 (388)
                      ...|+|+|+|||||||+|+.||+.||+.+|++++++++....   .    +...+.......    .+.+...+......
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKA   87 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhcc
Confidence            467999999999999999999999999999999998765422   2    223333322111    12222222222233


Q ss_pred             CCCeEEEecCCcccccccHHHHH----hhcC-CcEEEEEcCccc--c-----------ccCHHHHHHHHHHH----hH--
Q 016486          255 HVRAVVATLGGQQGAAARADKWQ----HLYA-GFTVWLSQTEAM--D-----------ENSAKEEARRHVKD----GK--  310 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~----~L~~-g~VVyLd~~~e~--D-----------~~d~~e~l~~l~~e----R~--  310 (388)
                      ....+|-+|..     ...+.+.    .+.. +.+|+|+++.+.  .           .....+.++++++.    ..  
T Consensus        88 ~~~~~vl~g~p-----~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l  162 (196)
T d1ukza_          88 NKHKFLIDGFP-----RKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPV  162 (196)
T ss_dssp             TCCEEEEETCC-----CSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHH
T ss_pred             CCCceeeeccc-----hhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            34455655644     2222222    2233 789999999876  0           11223333333322    22  


Q ss_pred             -hccccCcEEEEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          311 -LGYSNADVVVKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       311 -~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                       .+|+..+..+.+++...  +++|.++|.+.|++.+
T Consensus       163 ~~~y~~~~~~~~Id~~~s--~eeV~~~I~~~i~~~L  196 (196)
T d1ukza_         163 IEYFETKSKVVRVRCDRS--VEDVYKDVQDAIRDSL  196 (196)
T ss_dssp             HHHHHTTTCEEEEECSSC--HHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCEEEEECCCC--HHHHHHHHHHHHHhhC
Confidence             35666554444443322  5699999999998753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.45  E-value=2.6e-13  Score=118.38  Aligned_cols=154  Identities=13%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCc------hhhhhhccCc----HHHHHHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT------IDSWMLAEGS----DSVVNGECDVLESLSS  254 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~s------I~eif~~~Ge----~~FRe~E~~vL~~L~~  254 (388)
                      ++++|+|+|+|||||||+|+.||+++|+++|++++++++.....      +.+.+. .|.    ..........+.....
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEIVVNMVKERLRQPDA   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHh-cCCcccceeehhhhhhHhhhccc
Confidence            46889999999999999999999999999999999988764321      112211 111    1111111111111111


Q ss_pred             CCCeEEEecCCcccccccHHHHHhhc-----CCcEEEEEcCccc--------cccC-HHHHHHHHHHHhH---hccccCc
Q 016486          255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAM--------DENS-AKEEARRHVKDGK---LGYSNAD  317 (388)
Q Consensus       255 ~~~~VVStGGG~~gav~r~enr~~L~-----~g~VVyLd~~~e~--------D~~d-~~e~l~~l~~eR~---~~Y~~AD  317 (388)
                      ..+.+|-.|.+     ...+....+.     ...+|||+++.++        |..+ ...++...+++-.   .+|..--
T Consensus        81 ~~~~~vid~~~-----~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y~~~~  155 (189)
T d1zaka1          81 QENGWLLDGYP-----RSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYENII  155 (189)
T ss_dssp             HHTCEEEESCC-----CSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             ccCcEEeeccc-----hhhHHHhhhhhcccccchheeechhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            12334444533     2233333332     2579999999877        1121 1223333222222   3454222


Q ss_pred             EEEEcCCCCcccHHHHHHHHHHHHHHhhhcC
Q 016486          318 VVVKLQGWDADHAKSVAQASLSALKQLIQSD  348 (388)
Q Consensus       318 ~vV~~d~~s~e~~eeVa~eIl~~L~~~~~~~  348 (388)
                      ++|+.+. +   +++|+++|.+.|...+...
T Consensus       156 ~~Id~~~-~---idev~~~I~~~l~~il~~~  182 (189)
T d1zaka1         156 VKVQGDA-T---VDAVFAKIDELLGSILEKK  182 (189)
T ss_dssp             EEEECSS-C---HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCC-C---HHHHHHHHHHHHHHHhhhh
Confidence            3444332 2   5699999999998877643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.43  E-value=2.8e-13  Score=116.14  Aligned_cols=154  Identities=14%  Similarity=0.101  Sum_probs=83.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHH-HHHHHHHHHHHHhc--CCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDS-VVNGECDVLESLSS--HVR  257 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~-FRe~E~~vL~~L~~--~~~  257 (388)
                      ++|+|+|+|||||||+|+.||++||+.+|++++++.+...      ..+.+.+.. |.-. .......+...+..  ...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDR-GDLVPDEVTIGIVRERLSKDDCQN   79 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHc-CCeeccchHHHHHHHHhhchhhhc
Confidence            5799999999999999999999999999999999876532      122222222 2211 11111112222221  123


Q ss_pred             eEEEecCCcccccccHHHHH-hhc-----CCcEEEEEcCcccc-----ccCHHHHHHHHHHH----hH---hccccCcEE
Q 016486          258 AVVATLGGQQGAAARADKWQ-HLY-----AGFTVWLSQTEAMD-----ENSAKEEARRHVKD----GK---LGYSNADVV  319 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~-~L~-----~g~VVyLd~~~e~D-----~~d~~e~l~~l~~e----R~---~~Y~~AD~v  319 (388)
                      .+|.+|...  ......... ...     ...++||+++.+.-     ..+..+.+.++++.    ..   .+|.+.+..
T Consensus        80 ~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~  157 (182)
T d1zina1          80 GFLLDGFPR--TVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYL  157 (182)
T ss_dssp             CEEEESCCC--SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHTHHHHHHHHHTCE
T ss_pred             Ccccccccc--hhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            455555431  111111111 111     25799999998771     11112333333332    12   346653323


Q ss_pred             EEcCCCCcccHHHHHHHHHHHHHHhh
Q 016486          320 VKLQGWDADHAKSVAQASLSALKQLI  345 (388)
Q Consensus       320 V~~d~~s~e~~eeVa~eIl~~L~~~~  345 (388)
                      +.+++..+  +++|.++|...|..+.
T Consensus       158 ~~Id~~~~--~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         158 RNINGEQD--MEKVFADIRELLGGLA  181 (182)
T ss_dssp             EEEECSSC--HHHHHHHHHHHHHHHH
T ss_pred             EEEECCCC--HHHHHHHHHHHHHhcc
Confidence            33333322  5699999999998765

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.42  E-value=3.7e-14  Score=119.00  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+|..|+|+|+|||||||||++||++|+..+++.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~   38 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV   38 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCch
Confidence            46899999999999999999999999976555543

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=8e-13  Score=114.07  Aligned_cols=148  Identities=16%  Similarity=0.103  Sum_probs=83.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHHHh--cCCCe
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLS--SHVRA  258 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~L~--~~~~~  258 (388)
                      ++|+|+|+|||||||+|+.||+++|+.++++++++.+...      ..+.+++..........+...+...+.  ...+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            5799999999999999999999999999999999876542      234444443221111111111222221  11234


Q ss_pred             EEEecCCcccccccHHHHHhh----c-CCcEEEEEcCccc--c---ccCHHHHHHHHHHH-------hHhcccc-C----
Q 016486          259 VVATLGGQQGAAARADKWQHL----Y-AGFTVWLSQTEAM--D---ENSAKEEARRHVKD-------GKLGYSN-A----  316 (388)
Q Consensus       259 VVStGGG~~gav~r~enr~~L----~-~g~VVyLd~~~e~--D---~~d~~e~l~~l~~e-------R~~~Y~~-A----  316 (388)
                      +|..|..     ........+    . ..++|||++|.++  +   ..+..+.+.++++.       ...+|.+ +    
T Consensus        81 ~i~~g~p-----r~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~  155 (179)
T d1e4va1          81 FLLDGFP-----RTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGN  155 (179)
T ss_dssp             EEEESCC-----CSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred             eeecccc-----cchHHhhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            5555543     222222222    2 2679999999987  1   11112333333322       2244543 3    


Q ss_pred             cEEEEcCCCCcccHHHHHHHHHHHH
Q 016486          317 DVVVKLQGWDADHAKSVAQASLSAL  341 (388)
Q Consensus       317 D~vV~~d~~s~e~~eeVa~eIl~~L  341 (388)
                      +.++.+|+..+  +++|.++|.+.|
T Consensus       156 ~~~~~IDa~~~--ieeV~~~I~~~l  178 (179)
T d1e4va1         156 TKYAKVDGTKP--VAEVRADLEKIL  178 (179)
T ss_dssp             CEEEEEETTSC--HHHHHHHHHHHH
T ss_pred             CcEEEEECCCC--HHHHHHHHHHHh
Confidence            23444554333  569998888765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.41  E-value=1.3e-12  Score=113.97  Aligned_cols=154  Identities=10%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC--chh----hhhhccCcHHHHHHHHHHHHHHhc-CC
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TID----SWMLAEGSDSVVNGECDVLESLSS-HV  256 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~--sI~----eif~~~Ge~~FRe~E~~vL~~L~~-~~  256 (388)
                      -++..|+|+|+|||||||+|+.||+.||+.+|++++++.+....  ...    ..+.......-......+...+.. ..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhhc
Confidence            35678999999999999999999999999999999998765432  222    222221111111122222222222 22


Q ss_pred             CeEEEecCCcccccccHHHHHhhc--------CCcEEEEEcCccc--c-----------ccCHHHHHHHHHHH----h--
Q 016486          257 RAVVATLGGQQGAAARADKWQHLY--------AGFTVWLSQTEAM--D-----------ENSAKEEARRHVKD----G--  309 (388)
Q Consensus       257 ~~VVStGGG~~gav~r~enr~~L~--------~g~VVyLd~~~e~--D-----------~~d~~e~l~~l~~e----R--  309 (388)
                      ..+|-.|.     ....+....+.        ..++|||+++++.  .           ..+..+.++++++.    .  
T Consensus        84 ~~~i~dg~-----p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~  158 (194)
T d1qf9a_          84 KNFLVDGF-----PRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKL  158 (194)
T ss_dssp             CCEEEETC-----CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHH
T ss_pred             CCeEEEec-----chhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHH
Confidence            33444443     33333333221        1479999999987  0           11223333333322    1  


Q ss_pred             -HhccccCcEEEEcCCCCcccHHHHHHHHHHHHHHh
Q 016486          310 -KLGYSNADVVVKLQGWDADHAKSVAQASLSALKQL  344 (388)
Q Consensus       310 -~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~~  344 (388)
                       ..+|.+.+.++.+++...  +++|.++|.+.|+.+
T Consensus       159 ~~~~y~~~~~~~~Id~~~~--ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         159 VIDHYNKFDKVKIIPANRD--VNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHHHHTTCEEEEECSSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCEEEEECCCC--HHHHHHHHHHHHHHc
Confidence             235666543333433221  569999988877753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.3e-13  Score=116.51  Aligned_cols=152  Identities=13%  Similarity=0.069  Sum_probs=85.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc------CchhhhhhccCcHHHHHHHHHHHHHHhc----C
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLSS----H  255 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g------~sI~eif~~~Ge~~FRe~E~~vL~~L~~----~  255 (388)
                      .++|+|+|+|||||||+|+.||+++|+.+|++++++.+...      ..+...+...+..........+...+..    .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            36799999999999999999999999999999999877543      2344444443333333333333333332    2


Q ss_pred             CCeEEEecCCcccccccHHHH-Hhhc-----CCcEEEEEcCccc--cccCHHHHHHHHHHH---h----HhccccCcEEE
Q 016486          256 VRAVVATLGGQQGAAARADKW-QHLY-----AGFTVWLSQTEAM--DENSAKEEARRHVKD---G----KLGYSNADVVV  320 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr-~~L~-----~g~VVyLd~~~e~--D~~d~~e~l~~l~~e---R----~~~Y~~AD~vV  320 (388)
                      ...|+. |.+.  .....+.+ ..+.     ...+|||+++.+.  ..-+.++.+.++++.   .    ..+|++-+..+
T Consensus        82 ~g~i~d-g~p~--~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~~~~~r~~~y~~~~~~v~~~y~~~~~~~  158 (180)
T d1akya1          82 NGFILD-GFPR--TIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKRLAAYHAQTEPIVDFYKKTGIWA  158 (180)
T ss_dssp             SCEEEE-SCCC--SHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHHHHHHHHHHHHHHTTHHHHHHHHHTCEE
T ss_pred             CCEecc-Cccc--hhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccccccchHHHHHHHHHHHHHHHHhcCCEE
Confidence            334554 4331  12222222 2332     2579999999876  000001112222211   1    13455433333


Q ss_pred             EcCCCCcccHHHHHHHHHHHHH
Q 016486          321 KLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       321 ~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                      .+++..+  +++|.++|++.|.
T Consensus       159 ~Id~~~~--~eeV~~~I~~~l~  178 (180)
T d1akya1         159 GVDASQP--PATVWADILNKLG  178 (180)
T ss_dssp             EEETTSC--HHHHHHHHHHHHT
T ss_pred             EEECCCC--HHHHHHHHHHHHc
Confidence            3333222  5699999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=9.6e-13  Score=113.76  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=87.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCcHHHHHHHHHHHHHHhc---CCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGSDSVVNGECDVLESLSS---HVR  257 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge~~FRe~E~~vL~~L~~---~~~  257 (388)
                      ++|+|+|+|||||||+|+.||+.||+.+|++++++.+....      .+..++. .|.....++...++.....   ...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~   79 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNNPDAAN   79 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHH-hhhhhhhHHHHHHHHHHhhCccccc
Confidence            58999999999999999999999999999999998775432      2233333 2333333455566655432   234


Q ss_pred             eEEEecCCcccccccHHHHHh-h-----cCCcEEEEEcCccc-------c--ccCHHHHHHHHHHH----hH---hcccc
Q 016486          258 AVVATLGGQQGAAARADKWQH-L-----YAGFTVWLSQTEAM-------D--ENSAKEEARRHVKD----GK---LGYSN  315 (388)
Q Consensus       258 ~VVStGGG~~gav~r~enr~~-L-----~~g~VVyLd~~~e~-------D--~~d~~e~l~~l~~e----R~---~~Y~~  315 (388)
                      .+|..|++.  .......+.. .     ...++|+|+++.+.       .  ..+..+.+.++++.    ..   .+|..
T Consensus        80 ~~i~d~~p~--~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~  157 (181)
T d2cdna1          80 GFILDGYPR--SVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRD  157 (181)
T ss_dssp             CEEEESCCC--SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred             cEEeccccc--chhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455555542  1111111211 1     12569999999876       0  12223333333332    22   23544


Q ss_pred             CcEEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          316 ADVVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       316 AD~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                      --++|+.++ +   +++|+++|++.|.
T Consensus       158 ~~~~Id~~~-s---~eeV~~~I~~~l~  180 (181)
T d2cdna1         158 QLKTVDAVG-T---MDEVFARALRALG  180 (181)
T ss_dssp             TEEEEECCS-C---HHHHHHHHHHHTT
T ss_pred             CeEEEECCC-C---HHHHHHHHHHHhC
Confidence            334555543 3   5699999988764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.36  E-value=3.1e-12  Score=111.35  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      +|.+|+|+|+|||||||+|+.||+++|+.+|++++++.+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~   41 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAM   41 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHH
Confidence            5789999999999999999999999999999999988654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.35  E-value=6.1e-12  Score=110.15  Aligned_cols=152  Identities=15%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC------chhhhhhccCcHHHHHHHHHHHHHHh---cC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGSDSVVNGECDVLESLS---SH  255 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~------sI~eif~~~Ge~~FRe~E~~vL~~L~---~~  255 (388)
                      +++.|+|+|+|||||||+|+.||+++|+++|++++++.+....      .+.+.+.....-.-..+...+.+.+.   ..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDT   86 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccc
Confidence            5678999999999999999999999999999999999876532      22333332111111111122222332   22


Q ss_pred             CCeEEEecCCcccccccHHHHHh----hcC-CcEEEEEcCccc----------------c-ccCHHHHHHHHHHHhH---
Q 016486          256 VRAVVATLGGQQGAAARADKWQH----LYA-GFTVWLSQTEAM----------------D-ENSAKEEARRHVKDGK---  310 (388)
Q Consensus       256 ~~~VVStGGG~~gav~r~enr~~----L~~-g~VVyLd~~~e~----------------D-~~d~~e~l~~l~~eR~---  310 (388)
                      .+.+|..|..     ........    +.. ..+++++++.+.                | .+....++....++..   
T Consensus        87 ~~g~ildg~p-----r~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~  161 (194)
T d3adka_          87 SKGFLIDGYP-----REVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVI  161 (194)
T ss_dssp             CSCEEEESCC-----SSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHH
T ss_pred             cccceeeecc-----chhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            3445556644     22222222    222 679999999877                0 1122233333333333   


Q ss_pred             hccccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          311 LGYSNADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       311 ~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      .+|+..+.++.+++...  +++|.++|...|+.
T Consensus       162 ~~y~~~~~~~~Id~~~s--~~eV~~~I~~~i~~  192 (194)
T d3adka_         162 AFYEKRGIVRKVNAEGS--VDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHHTTTTCEEEEECCSC--HHHHHHHHHHHHHT
T ss_pred             HHHHhcCCEEEEECCCC--HHHHHHHHHHHHHh
Confidence            34776543333443322  56999999988875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.35  E-value=6.8e-13  Score=110.47  Aligned_cols=151  Identities=9%  Similarity=-0.055  Sum_probs=80.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcce-echhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG  265 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fI-D~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG  265 (388)
                      +.|+|+|++||||||+|+.||+.++..++ ++|.+.+...+..........+.........+...........+|..+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~   82 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIA   82 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            46999999999999999999999998754 67776554443333222222121221222233333433444444444322


Q ss_pred             cccccccHHHHHhh-c--C---CcEEEEEcCccc------c-c--cCHHHHHHHHHHHhHhccccCcEEEEcCCCCcccH
Q 016486          266 QQGAAARADKWQHL-Y--A---GFTVWLSQTEAM------D-E--NSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHA  330 (388)
Q Consensus       266 ~~gav~r~enr~~L-~--~---g~VVyLd~~~e~------D-~--~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~  330 (388)
                      .  ..........+ .  .   ..+|||+++.++      . +  ....+...+.+++....+....++|++++.+++  
T Consensus        83 ~--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--  158 (176)
T d2bdta1          83 F--PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPT--  158 (176)
T ss_dssp             C--HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTCCTTSEEECSSSCGG--
T ss_pred             c--cHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHHHHHHHHHhCCCCCeEEEECCCCCHH--
Confidence            1  01111111111 1  2   247899999876      0 1  111112233344444444446688999998876  


Q ss_pred             HHHHHHHHHHHH
Q 016486          331 KSVAQASLSALK  342 (388)
Q Consensus       331 eeVa~eIl~~L~  342 (388)
                       ++++.|.+.++
T Consensus       159 -~~~~~I~~i~~  169 (176)
T d2bdta1         159 -NLNDIVKNLKT  169 (176)
T ss_dssp             -GHHHHHHHHHH
T ss_pred             -HHHHHHHHHHh
Confidence             77766655554

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.30  E-value=9.3e-12  Score=107.73  Aligned_cols=39  Identities=18%  Similarity=0.185  Sum_probs=35.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      |+|+|+|+|||||||+|+.||++||++++++++++.+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~   39 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAI   39 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhh
Confidence            579999999999999999999999999999999887643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.5e-11  Score=104.39  Aligned_cols=151  Identities=13%  Similarity=0.183  Sum_probs=85.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcC-------chhhhhhccC----cHHHHHHHHHHHHHHh-
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-------TIDSWMLAEG----SDSVVNGECDVLESLS-  253 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~-------sI~eif~~~G----e~~FRe~E~~vL~~L~-  253 (388)
                      ++.|+|+|+|||||||+|+.||+.||+.+|++++++.+....       .+.+.++...    +..+..+..++.+... 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            357999999999999999999999999999999999765532       1223333221    1122222222222222 


Q ss_pred             -cCCCeEEEecCCcccccccHHHHHhh----cC----CcEEEEEcCccc-----------c--ccCHHHHHHHHHHH---
Q 016486          254 -SHVRAVVATLGGQQGAAARADKWQHL----YA----GFTVWLSQTEAM-----------D--ENSAKEEARRHVKD---  308 (388)
Q Consensus       254 -~~~~~VVStGGG~~gav~r~enr~~L----~~----g~VVyLd~~~e~-----------D--~~d~~e~l~~l~~e---  308 (388)
                       .....++-.|..     ........+    ..    ..+|+|+++.+.           .  ..+..+.+.++++.   
T Consensus        81 ~~~~~~~~~~g~p-----r~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~  155 (194)
T d1teva_          81 NAQKNKFLIDGFP-----RNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQ  155 (194)
T ss_dssp             CTTCCEEEEESCC-----CSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHH
T ss_pred             hhcccceeeccch-----hhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHH
Confidence             123455555533     333322222    21    358899999876           0  12223334433322   


Q ss_pred             ----hHhccccCcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          309 ----GKLGYSNADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       309 ----R~~~Y~~AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                          ...+|.+.+..+.+|+..  ++++|.++|+..|..
T Consensus       156 ~~~~l~~~y~~~~~~~~IDa~~--s~eeV~~~I~~il~k  192 (194)
T d1teva_         156 STKPIIDLYEEMGKVKKIDASK--SVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHhc
Confidence                124576644333333322  256999999988765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.17  E-value=4.3e-11  Score=107.93  Aligned_cols=150  Identities=14%  Similarity=0.145  Sum_probs=85.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc----CCc--ceechhHHHHHhcCchhhhhhccCc-HHHHHHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL----GYT--PLSTKELLETFAKQTIDSWMLAEGS-DSVVNGECDVLESLSS  254 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----G~~--fID~D~lIE~~~g~sI~eif~~~Ge-~~FRe~E~~vL~~L~~  254 (388)
                      ...+|..|+|+|+|||||||+|+.|+++|    ++.  ++|+|.+.+.. +...  -|...+. +..+.+ .++...+..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l-~~~l--~ys~~~r~~~~~r~-~~~a~~~~~   95 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL-NKDL--GFSEADRNENIRRI-AEVAKLFAD   95 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT-TTTC--CSSHHHHHHHHHHH-HHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhh-cCCC--CCChhHHHHHHHHH-HHHHHHHhc
Confidence            34467899999999999999999999876    444  57788764322 1111  1222111 122222 223334444


Q ss_pred             CCC-eEEEecCCcccccccHHHHHhhc----------CCcEEEEEcCccc----cccCHHHHHHHHHHHh-------Hhc
Q 016486          255 HVR-AVVATLGGQQGAAARADKWQHLY----------AGFTVWLSQTEAM----DENSAKEEARRHVKDG-------KLG  312 (388)
Q Consensus       255 ~~~-~VVStGGG~~gav~r~enr~~L~----------~g~VVyLd~~~e~----D~~d~~e~l~~l~~eR-------~~~  312 (388)
                      .+. +||++....  ...+..+++.+.          ..+.|||++|.++    |......   +.....       ..-
T Consensus        96 ~g~~viv~~i~~~--~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~---~~~~~~~~~~~gvd~~  170 (208)
T d1m7ga_          96 SNSIAITSFISPY--RKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYK---KAREGVIKEFTGISAP  170 (208)
T ss_dssp             TTCEEEEECCCCC--HHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHH---HHHHTSSSSCBTTTBC
T ss_pred             cCCceeeeccccc--HHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchh---hhhcCcccceeccccc
Confidence            444 555555442  233444554431          1368999999876    2222111   111111       112


Q ss_pred             ccc---CcEEEEcCCCCcccHHHHHHHHHHHHHH
Q 016486          313 YSN---ADVVVKLQGWDADHAKSVAQASLSALKQ  343 (388)
Q Consensus       313 Y~~---AD~vV~~d~~s~e~~eeVa~eIl~~L~~  343 (388)
                      |+.   +|++|+++..++   ++.+++|++.|+.
T Consensus       171 ye~P~~~dl~Idt~~~s~---~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         171 YEAPANPEVHVKNYELPV---QDAVKQIIDYLDT  201 (208)
T ss_dssp             CCCCSSCSEEEECSSSCH---HHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEeCCCCCH---HHHHHHHHHHHHH
Confidence            433   789999988775   4999999888875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.17  E-value=1.6e-10  Score=101.70  Aligned_cols=42  Identities=24%  Similarity=0.305  Sum_probs=37.7

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      |+...|.|.|++||||||+|+.||+.||++++++.+++...+
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            456778899999999999999999999999999999987653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.97  E-value=3.2e-09  Score=88.72  Aligned_cols=151  Identities=9%  Similarity=-0.003  Sum_probs=76.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCc-----ceechhHHHHHhc-C---chhhhhhcc---CcHHHHHHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYT-----PLSTKELLETFAK-Q---TIDSWMLAE---GSDSVVNGECDVLESLSS  254 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~-----fID~D~lIE~~~g-~---sI~eif~~~---Ge~~FRe~E~~vL~~L~~  254 (388)
                      +.|+|.|++||||||+++.||++|+..     .+..++....... .   ...+.+...   ....+.......+..+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            679999999999999999999999643     3344555433321 1   111111111   111222222333444444


Q ss_pred             CCCeEEEecCCcccc-----c--ccHHHHHhhcCCcEEEEEcCccc-------c-----ccCHHHH------HHHHHHHh
Q 016486          255 HVRAVVATLGGQQGA-----A--ARADKWQHLYAGFTVWLSQTEAM-------D-----ENSAKEE------ARRHVKDG  309 (388)
Q Consensus       255 ~~~~VVStGGG~~ga-----v--~r~enr~~L~~g~VVyLd~~~e~-------D-----~~d~~e~------l~~l~~eR  309 (388)
                      . ..|+..+.+. ..     .  .............+|||++++++       +     .....+.      +.+.+...
T Consensus        82 ~-~~vl~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (190)
T d1khta_          82 E-SPVAVDTHST-VSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS  159 (190)
T ss_dssp             T-SCEEEECCSE-EEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             C-CeEEECCccc-chHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHH
Confidence            3 4454444331 00     0  01112223335789999999987       1     0111111      11122222


Q ss_pred             HhccccCc-EEEEcCCCCcccHHHHHHHHHHHHH
Q 016486          310 KLGYSNAD-VVVKLQGWDADHAKSVAQASLSALK  342 (388)
Q Consensus       310 ~~~Y~~AD-~vV~~d~~s~e~~eeVa~eIl~~L~  342 (388)
                      ...|..+. .+|++...+   +++++++|++.|+
T Consensus       160 ~~~~~~~~~~~v~~~~~~---~ee~~~ei~~~lk  190 (190)
T d1khta_         160 YGVLTGATVKIVQNRNGL---LDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHCCEEEEEECCTTC---HHHHHHHHHHHHC
T ss_pred             HHHhhCCCeEEEECCCCC---HHHHHHHHHHHhC
Confidence            23334433 456555555   4599999998874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.90  E-value=1.2e-09  Score=90.24  Aligned_cols=136  Identities=10%  Similarity=0.058  Sum_probs=75.3

Q ss_pred             CeEEEEecCCCchHHHHHHHH-HhcCCcceechhHHHHHhcCchhh--hhhccCcHHHHHHHHHHHHHHhcC---CCeEE
Q 016486          187 TSIFLVGDSTEVNEKVALELA-VGLGYTPLSTKELLETFAKQTIDS--WMLAEGSDSVVNGECDVLESLSSH---VRAVV  260 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LA-k~LG~~fID~D~lIE~~~g~sI~e--if~~~Ge~~FRe~E~~vL~~L~~~---~~~VV  260 (388)
                      +.|+|+|+|||||||+++.|+ +.+++.+++.|++.....+.....  .+....+...++....++..+...   ...||
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            468999999999999999875 456899999999988776542221  112212223333344444444432   23566


Q ss_pred             EecCCcccccccHHHHHhhcC-C---cEEEEEcCccccccCHHHHHHHHHHHhHhccccCcEEEEcCCCCcccHHHHHHH
Q 016486          261 ATLGGQQGAAARADKWQHLYA-G---FTVWLSQTEAMDENSAKEEARRHVKDGKLGYSNADVVVKLQGWDADHAKSVAQA  336 (388)
Q Consensus       261 StGGG~~gav~r~enr~~L~~-g---~VVyLd~~~e~D~~d~~e~l~~l~~eR~~~Y~~AD~vV~~d~~s~e~~eeVa~e  336 (388)
                      ..+++.. ...+....+.++. +   .+|||++|.+        .+.++...|...           .. +   +++...
T Consensus        83 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~~~e--------~~~~R~~~R~~~-----------~~-~---~~~i~~  138 (152)
T d1ly1a_          83 ISDTNLN-PERRLAWETFAKEYGWKVEHKVFDVPWT--------ELVKRNSKRGTK-----------AV-P---IDVLRS  138 (152)
T ss_dssp             ECSCCCS-HHHHHHHHHHHHHHTCEEEEEECCCCHH--------HHHHHHTTCGGG-----------CC-C---HHHHHH
T ss_pred             cccccCC-HHHHHHHHHhhhhhccchhhhhcCCCHH--------HHHHHHHccCCC-----------CC-C---HHHHHH
Confidence            6554410 1111122223332 3   5788887764        344444444221           11 2   267777


Q ss_pred             HHHHHHHhhh
Q 016486          337 SLSALKQLIQ  346 (388)
Q Consensus       337 Il~~L~~~~~  346 (388)
                      ..+.++++..
T Consensus       139 ~~~~~~~~~~  148 (152)
T d1ly1a_         139 MYKSMREYLG  148 (152)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHhhcC
Confidence            7777766553

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.90  E-value=4.1e-09  Score=88.60  Aligned_cols=26  Identities=12%  Similarity=-0.069  Sum_probs=23.1

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .|+|+|++||||||+++.||++|+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            46789999999999999999999644

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=8.1e-09  Score=89.73  Aligned_cols=38  Identities=18%  Similarity=0.151  Sum_probs=34.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      .++..|+|+|++||||||+++.|++.+++.+|+.|++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~   49 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG   49 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHH
Confidence            35678999999999999999999999999999999863

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.77  E-value=5.8e-08  Score=80.34  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      .++|+|+|++||||||+++.||+++|++++..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~   40 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG   40 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeeh
Confidence            4789999999999999999999999999998764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.74  E-value=1.9e-08  Score=88.97  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=32.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA  225 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~  225 (388)
                      .|-|+|.+|||||||++.|. .+|++++|+|.+..+.+
T Consensus         4 iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   40 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVV   40 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHH
Confidence            46799999999999999997 58999999999876644

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.3e-08  Score=84.47  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=29.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc----------ceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT----------PLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~----------fID~D~l  220 (388)
                      +-.|-|.|.+||||||+++.|++.||..          ++.+|++
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            3457799999999999999999999754          4677776

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=2.4e-08  Score=86.53  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      .|.|.||+||||+|+|+.||++||++++++.+++.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~   41 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   41 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            5777799999999999999999999999999998754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.8e-07  Score=80.75  Aligned_cols=26  Identities=12%  Similarity=0.041  Sum_probs=24.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|+-|+|.|++||||||+++.|++.|
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999987

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.5e-07  Score=83.23  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=33.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK  226 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g  226 (388)
                      .|.|+|.+||||||+++.|+ .+|++++|+|.+..+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~   42 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVE   42 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTS
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHh
Confidence            47799999999999999996 679999999999876653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.4e-07  Score=81.59  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=27.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---CCccee
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLS  216 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G~~fID  216 (388)
                      +|+-|+|.|+.||||||+++.|++.|   |+.++-
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            57889999999999999999999988   565553

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=1.1e-07  Score=81.95  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF  224 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~  224 (388)
                      ++.|-|+|.+||||||+++.|. .+|++++++|.+..+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~   40 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARA   40 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHh
Confidence            5668899999999999999995 5899999999986554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.2e-07  Score=82.88  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=26.1

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      +|+-|+|.|+.||||||+++.|++.|.-
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6889999999999999999999999964

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=3.3e-07  Score=78.72  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      |+-|+|+|++|||||||.+.|.+.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            6789999999999999999999886

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=9.6e-07  Score=75.47  Aligned_cols=42  Identities=17%  Similarity=0.206  Sum_probs=34.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCC-----cceechhHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQ  227 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~-----~fID~D~lIE~~~g~  227 (388)
                      ++.|+|+|.|||||||+++.||+.|++     ..++.|.+.....+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~   48 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT   48 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccc
Confidence            356999999999999999999999864     356779877776654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.24  E-value=2.2e-06  Score=75.96  Aligned_cols=50  Identities=12%  Similarity=0.102  Sum_probs=37.7

Q ss_pred             hhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcCCcce--echhHH
Q 016486          172 SWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELL  221 (388)
Q Consensus       172 ~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI--D~D~lI  221 (388)
                      .|+.+.++....-.++.|+|.|+|||||||+++.||..++..|+  ++|++.
T Consensus        18 ~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          18 NLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             HHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            45555554444445678999999999999999999999976555  556654

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.4e-07  Score=75.68  Aligned_cols=91  Identities=22%  Similarity=0.419  Sum_probs=74.0

Q ss_pred             CCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHH-
Q 016486           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVI-  155 (388)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~-  155 (388)
                      .+..|+|+....||++++.|+...+ ..+||.|+-..+++.|.++..+....+++ +.||..|.|.|..|.++++.+++ 
T Consensus        18 ~~~~Y~W~Qt~~~V~i~i~lp~~~~-k~kdv~v~~~~~~l~v~v~~~~~~~~~l~-g~L~~~I~~deS~w~i~~~~~~i~   95 (124)
T d1wgva_          18 VRENYTWSQDYTDLEVRVPVPKHVV-KGKQVSVALSSSSIRVAMLEENGERVLME-GKLTHKINTESSLWSLEPGKCVLV   95 (124)
T ss_dssp             CCSSCEEEEETTEEEEEEECCTTCC-SGGGEEEEECSSEEEEEEECSSSEEEEEE-EEBSSCBCTTTCEEEECTTSEEEE
T ss_pred             CCCCeEEEeECCEEEEEEEeCCCCc-chhhEEEEEEeCEEEEEEeccCCcceEEe-CcccCcccccccEEEEeCCCEEEE
Confidence            3458999999999999999996433 56899999999999999988877777775 78999999999999998887554 


Q ss_pred             HhhccCCCCCCchhh
Q 016486          156 NLKKQDPELKWPDIV  170 (388)
Q Consensus       156 ~~~~~~~~~~wp~~~  170 (388)
                      .+++. .+..||.+.
T Consensus        96 ~lkK~-~~~~W~~L~  109 (124)
T d1wgva_          96 NLSKV-GEYWWNAIL  109 (124)
T ss_dssp             EECBS-SSCCCSCSB
T ss_pred             EEEec-CCCcChhhc
Confidence            44554 445677664

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.3e-06  Score=73.13  Aligned_cols=31  Identities=10%  Similarity=-0.096  Sum_probs=26.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      +.+.|+|.|+.||||||+++.|++.|.-..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~   31 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV   31 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence            3578999999999999999999999964333

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.11  E-value=1.1e-06  Score=74.09  Aligned_cols=30  Identities=20%  Similarity=0.076  Sum_probs=24.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCccee
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLS  216 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID  216 (388)
                      ..|.|.|++||||||+++.|++.|+...++
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~~~~~~   52 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLREQGIS   52 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccccc
Confidence            346699999999999999999988744333

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=7.7e-06  Score=71.06  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=22.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .|+|+|++|||||||++.|++.++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            599999999999999999999865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.5e-05  Score=70.05  Aligned_cols=30  Identities=7%  Similarity=-0.082  Sum_probs=26.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcce
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL  215 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fI  215 (388)
                      ++.|+|.|+.||||||+++.|++.|+-..+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            467999999999999999999999975443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.1e-05  Score=71.78  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=23.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +|+-|+|+||+|+|||||.+.|.+..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            47889999999999999999998875

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.6e-06  Score=72.72  Aligned_cols=90  Identities=21%  Similarity=0.433  Sum_probs=74.3

Q ss_pred             CCCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchh-HHHH
Q 016486           77 NTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVI  155 (388)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~-~~v~  155 (388)
                      ...+|+|+....||++++.++.......+||.|+-..++|.|.++...   +|+ .+.||..|+|.|..|.++|. .+++
T Consensus         6 ~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~---~ll-~g~L~~~I~~des~W~ied~~~l~i   81 (131)
T d1wfia_           6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQP---PVV-DGELYNEVKVEESSWLIEDGKVVTV   81 (131)
T ss_dssp             SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSC---CSB-CSCBSSCBCSTTCEEEEETTTEEEE
T ss_pred             CCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCc---eee-cccccCcccccccEEEEeCCCEEEE
Confidence            445999999999999999998888889999999999999999887643   344 46899999999999999765 4567


Q ss_pred             HhhccCCCCCCchhh
Q 016486          156 NLKKQDPELKWPDIV  170 (388)
Q Consensus       156 ~~~~~~~~~~wp~~~  170 (388)
                      .+++...+..||.+.
T Consensus        82 ~L~K~~~~~~W~~l~   96 (131)
T d1wfia_          82 HLEKINKMEWWNRLV   96 (131)
T ss_dssp             EEEBSSSCCCCSCSB
T ss_pred             EEEECCCCccCHHHc
Confidence            777776665676663

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.6e-06  Score=73.64  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=22.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +.|+|+|++|||||||.+.|++.+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            469999999999999999999886

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.6e-05  Score=66.52  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.|+|+|++|+||+||.+.|.+..
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=7.1e-05  Score=64.06  Aligned_cols=29  Identities=14%  Similarity=0.104  Sum_probs=24.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCcce
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYTPL  215 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~fI  215 (388)
                      +.|+|.|+.||||||+++.|++.|   |+.++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~   32 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            459999999999999999999987   55443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=1.5e-05  Score=72.74  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=30.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+.|+|.|++|+|||++++.||+.+|++++..+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            467999999999999999999999999998765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.65  E-value=3.4e-05  Score=70.16  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=30.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .+.|.|.|++|||||++++.||+.+|++|+..+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            357999999999999999999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2.4e-05  Score=71.94  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=29.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|.|.|++|||||++++.+|+.+|++++..+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~   77 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS   77 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEE
Confidence            477999999999999999999999999996643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.55  E-value=2.2e-05  Score=69.34  Aligned_cols=37  Identities=14%  Similarity=0.101  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceec-hhHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST-KELLET  223 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~-D~lIE~  223 (388)
                      ..|.|+|..|||||||++.|++.+|+..+|. |.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            3588999999999999999999999999995 655444

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.6e-05  Score=61.55  Aligned_cols=85  Identities=16%  Similarity=0.352  Sum_probs=72.5

Q ss_pred             ceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEccCCCcchhhhhhhhhhccCCCCceeecchhHHHHHhhc
Q 016486           80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK  159 (388)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~~~~  159 (388)
                      -|+|.....+|.+++.+++.   ..+++.|+....++.+.+...++..-+++. .||..|+|.+..|.+.+..+.+.+++
T Consensus         4 ry~W~Qt~~~V~i~i~~~~~---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~~~~~kiei~L~K   79 (92)
T d1rl1a_           4 KYDWYQTESQVVITLMIKNV---QKNDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPIIPEQSTFKVLSTKIEIKLKK   79 (92)
T ss_dssp             CEEEEECSSEEEEEECCCSC---CGGGEEEECSSSCEEEEEECTTSSEEEEEE-CBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred             ceeEEeCCCEEEEEEEeCCC---ChHheEEEEecCEEEEEEEcCCCcEEEEEE-EcCcccCchhcEEEEeCCEEEEEEEE
Confidence            59999999999999999853   568999999999999988766666666665 69999999999999999998888888


Q ss_pred             cCCCCCCchh
Q 016486          160 QDPELKWPDI  169 (388)
Q Consensus       160 ~~~~~~wp~~  169 (388)
                      .+.+ .||.+
T Consensus        80 ~~~~-~W~~L   88 (92)
T d1rl1a_          80 PEAV-RWEKL   88 (92)
T ss_dssp             SSCC-CCSSS
T ss_pred             CCCC-cCcCc
Confidence            8764 68876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=2.6e-05  Score=68.56  Aligned_cols=32  Identities=19%  Similarity=0.066  Sum_probs=29.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ..+++|.|+||+||||+|++||+.+++.++..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~   66 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVT   66 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCcccc
Confidence            35799999999999999999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=3.5e-05  Score=76.23  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=33.8

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ...+.+.||.|+||+|||||-++|.||+.++.||+-.|
T Consensus        44 ~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          44 RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             TTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            34566889999999999999999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=2.4e-05  Score=73.20  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=31.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ...+.+|.|+||+|||||.+||.||+.++.+|+..|
T Consensus        46 ~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~   81 (309)
T d1ofha_          46 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (309)
T ss_dssp             HCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHhhccccchhccc
Confidence            345688999999999999999999999998876654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=3.2e-05  Score=68.10  Aligned_cols=33  Identities=21%  Similarity=0.143  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ..+++|.|++|+||||+|+.+|+.+++++..++
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~   67 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS   67 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            467999999999999999999999999988764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=7.5e-05  Score=62.20  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcC-------Ccceech
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTK  218 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D  218 (388)
                      -+|-.|||.|.+|+||||+|++|-..|.       +..+|.|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            3577899999999999999999977662       4556666

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.37  E-value=3.9e-05  Score=63.71  Aligned_cols=27  Identities=15%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      ++|+|+|++||||||+.+.++..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            479999999999999999999988643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=6e-05  Score=66.36  Aligned_cols=33  Identities=24%  Similarity=0.178  Sum_probs=29.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ....++|.|++|+||||++++||+.+++.++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~   83 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ   83 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            446899999999999999999999999887754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.9e-05  Score=62.10  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=22.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++|+|+|++|+||||+++.+++.|
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            679999999999999999999998

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=9.3e-05  Score=60.41  Aligned_cols=23  Identities=13%  Similarity=0.001  Sum_probs=21.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .|.|+|++||||||+++.|++.|
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.07  E-value=0.00012  Score=68.77  Aligned_cols=36  Identities=11%  Similarity=0.050  Sum_probs=27.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC---C--cceechhHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELL  221 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG---~--~fID~D~lI  221 (388)
                      ...|-|.|.+||||||+++.|++.++   +  .+|++|+++
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            44699999999999999999998773   4  489999985

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.06  E-value=8.2e-05  Score=63.23  Aligned_cols=32  Identities=3%  Similarity=-0.140  Sum_probs=27.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTP  214 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~f  214 (388)
                      .-++..|+|.|..||||||+++.|++.|+-..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~   37 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC   37 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            34567899999999999999999999997433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00015  Score=66.26  Aligned_cols=34  Identities=15%  Similarity=0.078  Sum_probs=31.3

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|.|.|++|+|||++++.||..+|++|+..+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            3577999999999999999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00018  Score=65.25  Aligned_cols=33  Identities=18%  Similarity=0.099  Sum_probs=30.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      ++.|.|.|++|+|||++++.+|..++++|+..+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            567999999999999999999999999999876

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00036  Score=61.16  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CC-chhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          165 KW-PDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       165 ~w-p~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .| |..-+.|+.+.+.+....-+..++|.|++|+||||+++.+|+.|-
T Consensus         2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2           2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            35 766678999987655544456799999999999999999999884

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0015  Score=61.48  Aligned_cols=36  Identities=19%  Similarity=0.119  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-------CcceechhHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL  221 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-------~~fID~D~lI  221 (388)
                      +..|-|.|.+||||||+++.|++.|.       ...|.+|+++
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            34678999999999999999999985       3458889884

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.86  E-value=0.00038  Score=66.81  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=32.6

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ...++++++|.||||+|||++++.||..+|++|+..
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            445678999999999999999999999999999875

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.026  Score=46.25  Aligned_cols=135  Identities=13%  Similarity=0.167  Sum_probs=78.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCCcceechhHHHHHhcCchhhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEecCCcc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ  267 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVStGGG~~  267 (388)
                      -|+|.|+..|=||||+..|++.|.||.+-+-.+--...           |.+..    .+-..+|...++++|..--...
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfelaks-----------gnekl----fehfnkladednviidrfvysn   66 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS-----------GNEKL----FEHFNKLADEDNVIIDRFVYSN   66 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHH-----------CHHHH----HHHHHHHTTCCSEEEESCHHHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhc-----------cCHHH----HHHHHhhccccceeeehhhhhh
Confidence            58999999999999999999999999998876532222           22221    1224466666677775210000


Q ss_pred             ---------cccccHHHHHhh----cC-CcEEEEEcCccc---------c---ccCHHHHHHHHHHHhHhccccCcEEEE
Q 016486          268 ---------GAAARADKWQHL----YA-GFTVWLSQTEAM---------D---ENSAKEEARRHVKDGKLGYSNADVVVK  321 (388)
Q Consensus       268 ---------gav~r~enr~~L----~~-g~VVyLd~~~e~---------D---~~d~~e~l~~l~~eR~~~Y~~AD~vV~  321 (388)
                               -.++.+...+.+    +. .-||||++++..         |   +....+.+.++|.+-...-....+.-+
T Consensus        67 lvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkdidsilelyrevmsnaglhtyswd  146 (164)
T d2axpa1          67 LVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWD  146 (164)
T ss_dssp             HHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             hHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCCHHHHHHHHHHHHhcCCceeeecc
Confidence                     012222222222    22 569999999876         1   122234444554433222112235677


Q ss_pred             cCCCCcccHHHHHHHHHHH
Q 016486          322 LQGWDADHAKSVAQASLSA  340 (388)
Q Consensus       322 ~d~~s~e~~eeVa~eIl~~  340 (388)
                      +..|+.+   ++|..|+-.
T Consensus       147 tgqwssd---eiakdiifl  162 (164)
T d2axpa1         147 TGQWSSD---EIAKDIIFL  162 (164)
T ss_dssp             TTTSCHH---HHHHHHHHH
T ss_pred             cCCcchH---HhhhheeEe
Confidence            7788765   888877643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.75  E-value=0.00024  Score=61.97  Aligned_cols=28  Identities=21%  Similarity=0.110  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      +..+++|.|++|+||||+++.+|+.++.
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3457999999999999999999998753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.67  E-value=0.00049  Score=59.60  Aligned_cols=27  Identities=11%  Similarity=-0.104  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      ...+++|.|++|+||||+++.|++.|.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            346899999999999999999999984

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00063  Score=59.34  Aligned_cols=25  Identities=12%  Similarity=0.175  Sum_probs=22.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+++|.|++|+||||+++.+|+.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3469999999999999999999987

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00031  Score=61.24  Aligned_cols=28  Identities=14%  Similarity=-0.039  Sum_probs=24.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTP  214 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~f  214 (388)
                      .+++|.|++|+||||+++.||+.++..+
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~~   64 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGRS   64 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhccc
Confidence            3689999999999999999999987653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.57  E-value=0.00054  Score=56.90  Aligned_cols=23  Identities=9%  Similarity=-0.006  Sum_probs=20.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .|.|+|.+||||||+...|+.+|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            45699999999999999998876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.51  E-value=0.0052  Score=54.02  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC-----CcceechhHHHHHhc----Cchhhhh---------------hccCcHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAK----QTIDSWM---------------LAEGSDSVV  242 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~lIE~~~g----~sI~eif---------------~~~Ge~~FR  242 (388)
                      ..++|.|++|+|||.++++++..+.     ..+++..++......    ....+++               .-.|.....
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~~~~~  116 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQ  116 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCchHHH
Confidence            3499999999999999999998873     456666665443321    1111111               111233333


Q ss_pred             HHHHHHHHHHhcCCC-eEEEecCCcccc-cccHHHHHhhcCCcEEEEE
Q 016486          243 NGECDVLESLSSHVR-AVVATLGGQQGA-AARADKWQHLYAGFTVWLS  288 (388)
Q Consensus       243 e~E~~vL~~L~~~~~-~VVStGGG~~ga-v~r~enr~~L~~g~VVyLd  288 (388)
                      +.=..++..+...+. +|+++....... ...++-+..|..|.++-|.
T Consensus       117 ~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~  164 (213)
T d1l8qa2         117 IEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE  164 (213)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred             HHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC
Confidence            222344555554444 555555432101 1244556667778888885

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00067  Score=63.41  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|+|++|+|||.+|+.||+.++.+|+-.|
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d   84 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD   84 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEec
Confidence            37889999999999999999999998887544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.47  E-value=0.00087  Score=64.25  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=31.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCcceec
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST  217 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~  217 (388)
                      ......+|.++||.|+|||-+||.||+.++.+|+-.
T Consensus        64 ~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~   99 (364)
T d1um8a_          64 VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS   99 (364)
T ss_dssp             TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             ccCCCcceeeeCCCCccHHHHHHHHHhhcccceeeh
Confidence            355678999999999999999999999998777643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.001  Score=57.47  Aligned_cols=34  Identities=6%  Similarity=-0.025  Sum_probs=29.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCcceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D  218 (388)
                      .++.|+|.|++|+|||++.+.+++.++..+...+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~   61 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLD   61 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEE
Confidence            4578999999999999999999999987665443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.00096  Score=57.38  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=26.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      +|..|+|.|..||||||+.|.+++.||..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            46679999999999999999999999974

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0012  Score=56.85  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+++|.|++|+||||+++.+|+.+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            459999999999999999999986

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.16  E-value=0.0057  Score=54.13  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=27.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +..|+|+|+.|+||||....||.++.     ..++.+|.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            44577899999999999888988772     457777766

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00044  Score=55.09  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=67.8

Q ss_pred             CCceeecCCCceEEEEEccCCcccccccceeeccCCCeEEEEEcc-CCCcchhhhhhhhhhccCCCCceeecchhHHHHH
Q 016486           78 TSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNR-SGSFITLIETNQLFDKIKPTETIWYIDEDQLVIN  156 (388)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~~~i~~~e~iw~~d~~~~v~~  156 (388)
                      |..|+++-...+|.+++.+++     .+++.|+-+.+++.+.+.- .++...+++ ..||..|+|.|..|.+.+..+.+.
T Consensus         3 p~~~~W~Qt~~~V~i~I~v~~-----~~~~~v~i~~~~l~~~~~~~~~~~~y~l~-~~L~~~I~~~~s~~~v~~~kiei~   76 (110)
T d1ejfa_           3 PASAKWYDRRDYVFIEFCVED-----SKDVNVNFEKSKLTFSCLGGSDNFKHLNE-IDLFHCIDPNDSKHKRTDRSILCC   76 (110)
T ss_dssp             CCCEEEEECSSEEEEEECCTT-----EEEEEEEEETTEEEEEEEETTTTEEEEEE-EEBSSCEEEEEEEEEECSSCEEEE
T ss_pred             CCCcEEEECCCEEEEEEEeCC-----CCCceEEEEeceEEEEEEecCCCceEEEE-EEcccCcccCccEEEEeCCEEEEE
Confidence            347889999999999999974     4678888888888886653 333334454 469999999999999998888888


Q ss_pred             hhccCCCCCCchhh
Q 016486          157 LKKQDPELKWPDIV  170 (388)
Q Consensus       157 ~~~~~~~~~wp~~~  170 (388)
                      .++.+.+.-||.+.
T Consensus        77 L~K~~~~~~W~~L~   90 (110)
T d1ejfa_          77 LRKGESGQSWPRLT   90 (110)
T ss_dssp             EEESSTTCCCSSSB
T ss_pred             EEEcCCCCCCCcee
Confidence            88887776777763

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.008  Score=53.04  Aligned_cols=69  Identities=17%  Similarity=0.192  Sum_probs=43.9

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech--hHHHHHhcCchhhhhhccCcHHHHHHHHHH
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK--ELLETFAKQTIDSWMLAEGSDSVVNGECDV  248 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D--~lIE~~~g~sI~eif~~~Ge~~FRe~E~~v  248 (388)
                      .....+.+++|+|.+|+|||+|...||+++          +..++.+|  .++   +|++.        ...|.+.-..+
T Consensus        38 L~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~Li---Ag~~~--------rG~~E~rl~~i  106 (195)
T d1jbka_          38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV---AGAKY--------RGEFEERLKGV  106 (195)
T ss_dssp             HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH---TTTCS--------HHHHHHHHHHH
T ss_pred             HhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHh---ccCCc--------cHHHHHHHHHH
Confidence            344466799999999999999999999966          35555555  333   23322        22344444466


Q ss_pred             HHHHhcC-CCeEE
Q 016486          249 LESLSSH-VRAVV  260 (388)
Q Consensus       249 L~~L~~~-~~~VV  260 (388)
                      +..+... +++|+
T Consensus       107 l~e~~~~~~~iIL  119 (195)
T d1jbka_         107 LNDLAKQEGNVIL  119 (195)
T ss_dssp             HHHHHHSTTTEEE
T ss_pred             HHHHhcCCCcEEE
Confidence            7676543 35554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.0056  Score=54.57  Aligned_cols=36  Identities=14%  Similarity=0.021  Sum_probs=27.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      ++..|+|+|+.|+||||....||.++.     ..++.+|.+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            456789999999999998888887662     455666665

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0017  Score=56.06  Aligned_cols=24  Identities=13%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +++|.|++|+||||+++.+|+.++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            589999999999999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0014  Score=60.47  Aligned_cols=69  Identities=20%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc----------CCcceech--hHHHHHhcCchhhhhhccCcHHHHHHHHHHH
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK--ELLETFAKQTIDSWMLAEGSDSVVNGECDVL  249 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L----------G~~fID~D--~lIE~~~g~sI~eif~~~Ge~~FRe~E~~vL  249 (388)
                      ....+.+++|+|++|+|||++.+.||+++          +..++.+|  .++   +|++        ....|.+.-..++
T Consensus        35 ~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~li---ag~~--------~~g~~e~r~~~i~  103 (268)
T d1r6bx2          35 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL---AGTK--------YRGDFEKRFKALL  103 (268)
T ss_dssp             TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------CCCC--------CSSCHHHHHHHHH
T ss_pred             hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHh---ccCc--------cchhHHHHHHHHH
Confidence            34456799999999999999999999875          23344433  332   2221        2233444445677


Q ss_pred             HHHhcCCCeEEE
Q 016486          250 ESLSSHVRAVVA  261 (388)
Q Consensus       250 ~~L~~~~~~VVS  261 (388)
                      ..+...+++|+-
T Consensus       104 ~~~~~~~~iIlf  115 (268)
T d1r6bx2         104 KQLEQDTNSILF  115 (268)
T ss_dssp             HHHSSSSCEEEE
T ss_pred             HHhhccCCceEE
Confidence            777666666653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.92  E-value=0.0011  Score=57.71  Aligned_cols=24  Identities=8%  Similarity=-0.152  Sum_probs=20.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .++|.|++|+|||++++.+++.|.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            355679999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.69  E-value=0.0024  Score=58.22  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -.+|..|.|+|++||||||+.+.|+..+
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3468899999999999999999998766

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.66  E-value=0.0024  Score=57.68  Aligned_cols=28  Identities=11%  Similarity=0.061  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.++++-.+
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            3368899999999999999999998776

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.64  E-value=0.0021  Score=60.84  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=27.6

Q ss_pred             CCeEE-EEecCCCchHHHHHHHHHhcC--Cccee--chhHHH
Q 016486          186 GTSIF-LVGDSTEVNEKVALELAVGLG--YTPLS--TKELLE  222 (388)
Q Consensus       186 g~~Iv-LIG~~GSGKSTVGr~LAk~LG--~~fID--~D~lIE  222 (388)
                      ++.++ |+|+||+|||.+++.||..+|  .+|+.  +-+++.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~  163 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS  163 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh
Confidence            34454 579999999999999999987  56655  344443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0022  Score=58.14  Aligned_cols=30  Identities=17%  Similarity=0.077  Sum_probs=26.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .--+|..|.|+|.+||||||+.++|+..+.
T Consensus        25 ~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          25 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            344689999999999999999999998773

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.011  Score=52.58  Aligned_cols=35  Identities=14%  Similarity=0.043  Sum_probs=27.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      +..|.|+|+.|+||||....||.++.     ..++.+|.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   48 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF   48 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            45688999999999998888897663     456777776

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.59  E-value=0.0069  Score=53.87  Aligned_cols=36  Identities=19%  Similarity=0.019  Sum_probs=25.0

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      ++..|+|+|+.|+||||....||.++.     ..+|.+|.+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            467789999999999998888887773     566777765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.57  E-value=0.012  Score=52.09  Aligned_cols=36  Identities=14%  Similarity=0.096  Sum_probs=27.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC-----CcceechhH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL  220 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG-----~~fID~D~l  220 (388)
                      ++..|.|+|+.|+||||....||..+.     ..+|.+|.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            467899999999999999888887763     345556654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.55  E-value=0.0033  Score=57.11  Aligned_cols=27  Identities=19%  Similarity=0.030  Sum_probs=24.3

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.++|+-.+
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            367899999999999999999998766

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0034  Score=56.80  Aligned_cols=28  Identities=18%  Similarity=0.089  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.++++-.+
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3468899999999999999999998766

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.003  Score=57.54  Aligned_cols=28  Identities=29%  Similarity=0.167  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.++|+..+
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3468899999999999999999998766

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.46  E-value=0.0037  Score=53.63  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=21.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .|+|+|+.||||||+-+.|.+.++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            589999999999999999987663

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.41  E-value=0.0032  Score=55.18  Aligned_cols=28  Identities=14%  Similarity=0.146  Sum_probs=24.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.+.++..+
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3368889999999999999999998765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.36  E-value=0.0047  Score=53.72  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      ...++-|.|+|.+|+||||++-.|.++ |+.+|.=|...
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~   48 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELVQR-GHRLIADDRVD   48 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEE
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEE
Confidence            456888999999999999999999987 99998877653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0038  Score=56.73  Aligned_cols=27  Identities=11%  Similarity=-0.020  Sum_probs=24.2

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.++-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            357889999999999999999998766

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.32  E-value=0.0034  Score=56.82  Aligned_cols=28  Identities=14%  Similarity=-0.031  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..|.|+|++||||||+.+.|+..+
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4468899999999999999999998776

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.30  E-value=0.0046  Score=56.20  Aligned_cols=28  Identities=18%  Similarity=0.055  Sum_probs=24.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.++++-.+
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3467889999999999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.031  Score=53.67  Aligned_cols=29  Identities=14%  Similarity=0.106  Sum_probs=25.2

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ....+.|++|+|.+|+|||+|...||+++
T Consensus        39 ~r~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          39 LRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             HCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             hcCCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            44567789999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.23  E-value=0.0057  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999988753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.20  E-value=0.0028  Score=58.48  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=23.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +.+|+|+|++|+||||++|.+|..|
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhC
Confidence            4689999999999999999999987

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.19  E-value=0.0038  Score=56.38  Aligned_cols=28  Identities=11%  Similarity=-0.008  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.++|+-.+
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3468899999999999999999999876

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.0055  Score=57.02  Aligned_cols=35  Identities=14%  Similarity=0.132  Sum_probs=27.9

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc--------CCcceechhH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL--------GYTPLSTKEL  220 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L--------G~~fID~D~l  220 (388)
                      +-.|-|.|..||||||++..|.+.|        ...++..|++
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            3456689999999999998887665        3456799998

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0057  Score=56.46  Aligned_cols=29  Identities=14%  Similarity=0.227  Sum_probs=25.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-.+|..|.|+|++||||||+.++|+..+
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34468999999999999999999998766

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.09  E-value=0.0054  Score=53.38  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=31.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      ..++-|.|.|.+|+||||++-.|.++ |+.+|.=|..+
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v~   49 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDAIE   49 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeEE
Confidence            46888999999999999999999876 99988777653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.01  E-value=0.0052  Score=56.16  Aligned_cols=28  Identities=14%  Similarity=0.052  Sum_probs=24.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.+.|+-.+
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3468899999999999999999998654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.94  E-value=0.0039  Score=56.78  Aligned_cols=27  Identities=15%  Similarity=-0.032  Sum_probs=24.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      -+|..+.|+|++||||||+.+.++-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            357899999999999999999999866

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.90  E-value=0.0088  Score=51.54  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechhHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL  221 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~lI  221 (388)
                      ...|+-|.|.|.+|+||||++-.|.++ |+.+|.=|..+
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            356889999999999999999999988 99988777654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.0084  Score=48.66  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ....|..+.|.|++|+|||+++-.+|...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35578999999999999999999888754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.011  Score=51.99  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      +..++|.|++|+||||+++.+++.++..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            3458999999999999999999998654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.75  E-value=0.004  Score=56.90  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=25.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      --+|..|.|+|.+||||||+.+.|+..+.
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            34688999999999999999999887663

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.65  E-value=0.0065  Score=56.65  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc---CCcceec
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL---GYTPLST  217 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L---G~~fID~  217 (388)
                      ++.|+|++|+|||.+|+.||+.|   +.+|+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~   87 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI   87 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEE
Confidence            67888999999999999999998   4455433

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.62  E-value=0.014  Score=52.78  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...|.|.||.|.||||+|+.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999998766

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.59  E-value=0.0093  Score=54.15  Aligned_cols=25  Identities=12%  Similarity=-0.041  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +-.+.|+|++||||||+.+.|+-.+
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEECCCCChHHHHHHHHHcCC
Confidence            3467799999999999999999877

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.57  E-value=0.0061  Score=57.66  Aligned_cols=29  Identities=21%  Similarity=0.087  Sum_probs=25.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      +..+|+|-|.-|+||||+++.|++.|+..
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            34579999999999999999999999754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.53  E-value=0.0071  Score=57.25  Aligned_cols=26  Identities=15%  Similarity=0.029  Sum_probs=24.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..|+|-|+.|+||||+++.|++.++.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            57999999999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.48  E-value=0.0086  Score=54.00  Aligned_cols=28  Identities=14%  Similarity=0.176  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      --+|..+.|+|++||||||+.+.|+-.+
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3468899999999999999999998776

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.46  E-value=0.0096  Score=48.18  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=19.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +..+|+|+|.+|+||||+-..|.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34679999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.27  E-value=0.46  Score=44.02  Aligned_cols=26  Identities=8%  Similarity=0.017  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +...|-|+|+||+||||+-..|++.+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998765

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.12  E-value=0.011  Score=53.49  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .-+|..+.|+|++||||||+.+.|+-.+
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3468889999999999999999998776

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.07  E-value=0.017  Score=53.29  Aligned_cols=96  Identities=14%  Similarity=0.072  Sum_probs=54.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC-----------cceechhHHHHHhcCchh-------------hhhhccCcHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY-----------TPLSTKELLETFAKQTID-------------SWMLAEGSDSVV  242 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~-----------~fID~D~lIE~~~g~sI~-------------eif~~~Ge~~FR  242 (388)
                      +||.|+|..|+||||+...|....|.           ...|.+. .|+.-|.||.             .+++.-|-..|-
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~-~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFME-QERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccH-HHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            68999999999999999999776663           2222222 3444455554             234455555553


Q ss_pred             HHHHHHHHHHhcCCC--eEEEecCCcccccccHHHHHhhcC---CcEEEEE
Q 016486          243 NGECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLYA---GFTVWLS  288 (388)
Q Consensus       243 e~E~~vL~~L~~~~~--~VVStGGG~~gav~r~enr~~L~~---g~VVyLd  288 (388)
                      .   ++...+...+.  +||+...|+  -+.....|+..+.   ..++|+.
T Consensus        86 ~---e~~~~l~~~D~avlVvda~~Gv--~~~T~~~w~~a~~~~lP~i~fIN  131 (276)
T d2bv3a2          86 I---EVERSMRVLDGAIVVFDSSQGV--EPQSETVWRQAEKYKVPRIAFAN  131 (276)
T ss_dssp             T---THHHHHHHCCEEEEEEETTTSS--CHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             H---HHHHHHHhhhheEEeccccCCc--chhHHHHHHHHHHcCCCEEEEEe
Confidence            2   22333332233  555666675  3556677877764   4588874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.01  E-value=0.016  Score=46.05  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..+|+|+|.+|+||||+...+...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            356999999999999999987653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.01  Score=52.98  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=23.6

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -.+|..+.|+|++||||||+.+.|+-.
T Consensus        22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          22 VRAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            346889999999999999999999863

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.94  E-value=0.015  Score=47.27  Aligned_cols=23  Identities=4%  Similarity=0.112  Sum_probs=20.0

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..+|+|+|.+|+||||+...|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.91  E-value=0.016  Score=47.05  Aligned_cols=23  Identities=9%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..+|+|+|.+||||||+...|..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.90  E-value=0.22  Score=41.10  Aligned_cols=27  Identities=11%  Similarity=0.069  Sum_probs=22.8

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++.-+|.|+|.+.+||||+...|.+.-
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhc
Confidence            455689999999999999999997543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.90  E-value=0.056  Score=49.26  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC-----------cceechhHHHHHhcCchh-------------hhhhccCcHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY-----------TPLSTKELLETFAKQTID-------------SWMLAEGSDSVV  242 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~-----------~fID~D~lIE~~~g~sI~-------------eif~~~Ge~~FR  242 (388)
                      +||.|+|..|+||||+...|....|.           ...|.+. .|+..|.|+.             .+++.-|-..|-
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~-~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchH-HHHHhCCeEEeecccccccccceeEEccCchhhhh
Confidence            68999999999999999998655543           2223222 3444555543             245666766665


Q ss_pred             HHHHHHHHHHhcCCC--eEEEecCCcccccccHHHHHhhcC---CcEEEEEc
Q 016486          243 NGECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLYA---GFTVWLSQ  289 (388)
Q Consensus       243 e~E~~vL~~L~~~~~--~VVStGGG~~gav~r~enr~~L~~---g~VVyLd~  289 (388)
                      .   ++...+...+.  +||+.-.|+  .+.....|+.+.+   ..+|++..
T Consensus        82 ~---e~~~al~~~D~avlvvda~~Gv--~~~t~~~~~~~~~~~~p~~i~iNk  128 (267)
T d2dy1a2          82 G---EIRGALEAADAALVAVSAEAGV--QVGTERAWTVAERLGLPRMVVVTK  128 (267)
T ss_dssp             H---HHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             h---hhhhhhcccCceEEEeeccCCc--cchhHHHHHhhhhccccccccccc
Confidence            3   44444443344  444555564  3455566776653   45667643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.015  Score=49.04  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             hhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          172 SWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       172 ~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .++.+..+  ...+|+.+.|.|.+||||||++-.+|..
T Consensus        22 ~LD~ll~G--Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          22 NLDTLLGG--GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             HHHHHHTS--SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             HHHhhhCC--CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            34555432  3567899999999999999999888754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.02  Score=44.90  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=19.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988763

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.62  E-value=0.096  Score=45.04  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=19.5

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+.|+|+|+   ||+|+.+.|.+.+
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~   30 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEF   30 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHC
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhC
Confidence            4578999986   6999999999975

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.53  E-value=0.017  Score=51.96  Aligned_cols=29  Identities=10%  Similarity=0.084  Sum_probs=25.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      -.+|..+-|+|++||||||+.+.|+-.+.
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34678899999999999999999998773

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.50  E-value=0.0099  Score=56.24  Aligned_cols=26  Identities=8%  Similarity=-0.037  Sum_probs=20.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..|+|-|..|+||||+++.|++.++.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            46999999999999999999998863

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.37  E-value=0.11  Score=44.73  Aligned_cols=97  Identities=10%  Similarity=0.069  Sum_probs=53.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC--------cceechhHH-HHHhcCchhh-------------hhhccCcHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY--------TPLSTKELL-ETFAKQTIDS-------------WMLAEGSDSVVNG  244 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~--------~fID~D~lI-E~~~g~sI~e-------------if~~~Ge~~FRe~  244 (388)
                      .+|.++|..++||||+...|-..+|.        ....+|..- |+.-|.++.-             +++.-|-..|-  
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~--   81 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI--   81 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH--
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH--
Confidence            58999999999999999988655441        122233333 3444656532             23444555554  


Q ss_pred             HHHHHHHHhcCCC--eEEEecCCcccccccHHHHHhhcC----CcEEEEE
Q 016486          245 ECDVLESLSSHVR--AVVATLGGQQGAAARADKWQHLYA----GFTVWLS  288 (388)
Q Consensus       245 E~~vL~~L~~~~~--~VVStGGG~~gav~r~enr~~L~~----g~VVyLd  288 (388)
                       .+++..+...+.  +||+.-.|+  -....+.|.++..    .++|+|.
T Consensus        82 -~~~~~~~~~aD~avlVvda~~Gv--~~qt~~~~~~~~~~gi~~iiv~iN  128 (204)
T d2c78a3          82 -KNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQVGVPYIVVFMN  128 (204)
T ss_dssp             -HHHHHHHTTCSSEEEEEETTTCC--CHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             -HHHHHHHHHCCEEEEEEECCCCC--cHHHHHHHHHHHHcCCCeEEEEEE
Confidence             245555554444  344555553  1223344555442    3466664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.16  E-value=0.026  Score=47.68  Aligned_cols=23  Identities=17%  Similarity=0.301  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ++|+|+|.+|+||||+-..|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999998888653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.13  E-value=0.029  Score=48.07  Aligned_cols=36  Identities=8%  Similarity=0.090  Sum_probs=28.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D  218 (388)
                      ..+|..++|.|.+|+|||+++..+|...   |  .-|++++
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            4468899999999999999999888876   2  4466554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.11  E-value=0.028  Score=48.00  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ..+|..+.|.|++|+||||+|-.+|...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5568899999999999999999887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.026  Score=45.25  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      |..|+|+|.+++||||+-..|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999988864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.82  E-value=0.029  Score=45.77  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +...|+|+|.+|+||||+...|.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            34679999999999999998773

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.03  Score=47.58  Aligned_cols=28  Identities=11%  Similarity=0.022  Sum_probs=24.1

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+|..+.|.|.+|+|||++|..+|..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3556889999999999999999988853

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.77  E-value=0.032  Score=45.42  Aligned_cols=22  Identities=9%  Similarity=0.175  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .+|+|+|.+|+||||+...|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999998775

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.75  E-value=0.022  Score=46.53  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      |+.-.|+|+|.+|+||||+...|..
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            3445799999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.029  Score=45.68  Aligned_cols=25  Identities=8%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHh
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +.-.|+|+|.+|+||||+...+...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            3457999999999999999988764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.62  E-value=0.026  Score=50.66  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             hhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          181 MQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       181 ~~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...++++..+|+|.+|+||||+-..|...
T Consensus        90 ~~~l~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          90 KEYLKGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HHHhcCCeEEEECCCCCCHHHHHHhhcch
Confidence            45678999999999999999999987543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.60  E-value=0.034  Score=45.54  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+...|...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4999999999999999988764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.035  Score=46.18  Aligned_cols=24  Identities=13%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             CeEEEEecC-CCchHHHHHHHHHhc
Q 016486          187 TSIFLVGDS-TEVNEKVALELAVGL  210 (388)
Q Consensus       187 ~~IvLIG~~-GSGKSTVGr~LAk~L  210 (388)
                      +++||+|-. |+||||+.-.||..|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            679999996 999999999999888

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.036  Score=45.55  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+...+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5999999999999999987653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=92.43  E-value=0.035  Score=46.38  Aligned_cols=21  Identities=24%  Similarity=0.172  Sum_probs=19.3

Q ss_pred             CeEEEEecCCCchHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      ..|.|+|.+|+||||+-..|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            369999999999999999986

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.43  E-value=0.029  Score=52.43  Aligned_cols=26  Identities=8%  Similarity=0.139  Sum_probs=23.4

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +.+|+++|..||||||+.+.|.....
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            57899999999999999999988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.04  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+.+.|...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5999999999999999998863

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.36  E-value=0.037  Score=45.18  Aligned_cols=20  Identities=15%  Similarity=0.297  Sum_probs=18.6

Q ss_pred             eEEEEecCCCchHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LA  207 (388)
                      .|+|+|.+|+||||+.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999886

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.35  E-value=0.043  Score=48.26  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=23.9

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ...+|..++|.|.+|+||||++..+|..
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            4567889999999999999998888754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.04  Score=44.94  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.26  E-value=0.044  Score=45.82  Aligned_cols=28  Identities=14%  Similarity=0.070  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ...|..+.|.|.+|+|||+++-.+|-.+
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998755

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.24  E-value=0.041  Score=44.47  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+...+...
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.21  E-value=0.076  Score=50.61  Aligned_cols=108  Identities=11%  Similarity=-0.025  Sum_probs=63.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC---CcceechhHHHHHhcCch-hhhhhccCcHHHHHHHHHHHHHHhcCCCeEEEe
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLETFAKQTI-DSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT  262 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG---~~fID~D~lIE~~~g~sI-~eif~~~Ge~~FRe~E~~vL~~L~~~~~~VVSt  262 (388)
                      --|+|+|+.||||||....+-+.+.   ..++..-+-+|....... -++-...+. .|.    ++++.+..++.=||..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~-~~~----~~l~~~lR~dPDvi~i  233 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDM-TFA----RGLRAILRQDPDVVMV  233 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTB-CHH----HHHHHHGGGCCSEEEE
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCC-CHH----HHHHHHHhhcCCEEEe
Confidence            3489999999999999988877764   455666666664432211 111222333 344    4566666666666666


Q ss_pred             cCCcccccccHHHH-Hhhc---CCcEEEEEcCccccccCHHHHHHHHHHH
Q 016486          263 LGGQQGAAARADKW-QHLY---AGFTVWLSQTEAMDENSAKEEARRHVKD  308 (388)
Q Consensus       263 GGG~~gav~r~enr-~~L~---~g~VVyLd~~~e~D~~d~~e~l~~l~~e  308 (388)
                      |=     +-.++.. ..+.   .|..||-.+...    ++...+.++...
T Consensus       234 gE-----iRd~~ta~~a~~aa~tGhlV~tTlHa~----~a~~~~~Rl~~~  274 (401)
T d1p9ra_         234 GE-----IRDLETAQIAVQASLTGHLVMSTLHTN----TAVGAVTRLRDM  274 (401)
T ss_dssp             SC-----CCSHHHHHHHHHHHHTTCEEEEEECCS----SSHHHHHHHHHH
T ss_pred             cC-----cCChHHHHHHHHHHhcCCeEEEEeccC----chHhhhhhhhhc
Confidence            62     3333333 2333   388999887765    445555555543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.20  E-value=0.03  Score=45.95  Aligned_cols=22  Identities=14%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      ...|+|+|.+|+||||+-..|.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4679999999999999999764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.18  E-value=0.042  Score=44.67  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .+|+|+|.+|+||||+...|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999988653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.16  E-value=0.039  Score=46.05  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHH
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      ..+|..+.|.|.+|+|||+++..++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4578999999999999999997554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.047  Score=47.95  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhc---CCc--ceech
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D  218 (388)
                      ++.|++.|--|+||||++..||..|   |++  .||+|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            5689999999999999988888887   543  47877

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.10  E-value=0.042  Score=44.89  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.041  Score=45.57  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=18.9

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            599999999999999988864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.94  E-value=0.051  Score=44.78  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALEL  206 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~L  206 (388)
                      +...|+|+|.+|+||||+...|
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHH
Confidence            4568999999999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.036  Score=45.09  Aligned_cols=22  Identities=9%  Similarity=0.218  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ..|+|+|.+|+||||+...|..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.05  Score=44.49  Aligned_cols=21  Identities=5%  Similarity=0.181  Sum_probs=19.1

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.053  Score=43.81  Aligned_cols=21  Identities=5%  Similarity=0.219  Sum_probs=19.1

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.053  Score=44.01  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+++|.+|+||||+...|...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.74  E-value=0.027  Score=50.78  Aligned_cols=28  Identities=7%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             hhhccCCCeEEEEecCCCchHHHHHHHH
Q 016486          180 SMQLLKGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +...++++..+|+|.+|+||||+-..|.
T Consensus        91 L~~~l~~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          91 IIPHFQDKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             TGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred             HHHhhccceEEEECCCCccHHHHHHhhc
Confidence            3567788999999999999999998775

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.051  Score=44.22  Aligned_cols=22  Identities=9%  Similarity=0.125  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+|||++...+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5999999999999999888753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.055  Score=44.22  Aligned_cols=22  Identities=9%  Similarity=0.214  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      -.|+|+|.+|+||||+...+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999998876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.048  Score=44.39  Aligned_cols=24  Identities=8%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .-.|+|+|.+|+|||++...+...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            346999999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.053  Score=44.58  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+|||++...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999888764

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.54  E-value=0.097  Score=53.69  Aligned_cols=75  Identities=16%  Similarity=0.104  Sum_probs=50.8

Q ss_pred             hhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          135 LFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       135 l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +.=.|.||..|-.+++ ..+-.|+........|-+...-+..-..+...-+..+|++.|-+|||||+-.|.+-+.|
T Consensus        41 iLiavNP~k~l~~y~~-~~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          41 FCVVINPYKQLPIYSE-KIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             SEEEECCSSCCTTCCH-HHHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCH-HHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3334667776653444 45666665555555687766444443344455567899999999999999999887766

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.05  Score=44.78  Aligned_cols=23  Identities=9%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+||||+...+...
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999988753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.45  E-value=0.052  Score=45.10  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+||||+-..|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999888653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.41  E-value=0.05  Score=44.35  Aligned_cols=21  Identities=14%  Similarity=0.229  Sum_probs=18.9

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.33  E-value=0.051  Score=44.85  Aligned_cols=20  Identities=15%  Similarity=0.298  Sum_probs=18.4

Q ss_pred             CeEEEEecCCCchHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALEL  206 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~L  206 (388)
                      -.|+|+|.+|+||||+...+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            36999999999999999988

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.059  Score=43.98  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+...|...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999988754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.058  Score=44.31  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999998765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.034  Score=44.90  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      +...|.|+|.+++||||+-..|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999998773

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.067  Score=46.91  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=26.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK  218 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D  218 (388)
                      ..+.|++.|--|+||||++-.||..|   |  .-.||+|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            35668888999999999877777766   4  4466888

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.061  Score=44.00  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=18.4

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            489999999999999987753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.04  E-value=0.07  Score=46.54  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=24.0

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+...+|.|.+|+||||++-.||..+
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999888763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.062  Score=43.66  Aligned_cols=21  Identities=10%  Similarity=0.172  Sum_probs=18.6

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999887764

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=90.86  E-value=0.13  Score=52.53  Aligned_cols=72  Identities=10%  Similarity=0.032  Sum_probs=47.9

Q ss_pred             ccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          138 KIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       138 ~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .|.|+..|-.++++ .+-+|+........|-+...-+..-..+....+..+|+|.|-+|||||+-+|.+=+.|
T Consensus        39 avNP~~~l~~y~~~-~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          39 STNPFKNLNIYKES-DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EECCSSCCSCCSHH-HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCHH-HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45566655445555 4556665444445677766444333344455577899999999999999999887765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.72  E-value=0.071  Score=44.03  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=19.0

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.077  Score=43.07  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -.|+|+|.+|+||||+...|...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999988753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.077  Score=43.42  Aligned_cols=21  Identities=14%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999988876

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.061  Score=47.08  Aligned_cols=23  Identities=9%  Similarity=-0.047  Sum_probs=19.7

Q ss_pred             eEEEEecCCCchHHHHHHHHHhc
Q 016486          188 SIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .++|.|+-||||||+-+.|.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            36889999999999999887754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.079  Score=43.28  Aligned_cols=22  Identities=5%  Similarity=0.138  Sum_probs=19.8

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+|||++-..+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.078  Score=43.82  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+|||++...+...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999888764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.44  E-value=0.15  Score=52.30  Aligned_cols=73  Identities=14%  Similarity=0.112  Sum_probs=48.9

Q ss_pred             hccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          137 DKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       137 ~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      =.|.|+..+=.+++ ..+-+|+........|-+...-+..-..+...-+..+|++.|-+|||||.-.|.+-+.|
T Consensus        77 iavNP~k~l~iy~~-~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2          77 VAVNPFKRIPIYTQ-EMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEECCSSCCSCCSH-HHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCH-HHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            34568776654555 45556665444445688766444433334445567899999999999999999876655

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.38  E-value=0.075  Score=43.63  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=19.6

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|.|+|.+|+||||+...|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999988754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.32  E-value=0.073  Score=43.29  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+|||++...+...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36999999999999999877654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.086  Score=42.91  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+|||++...+...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5999999999999999987663

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.16  E-value=0.078  Score=43.46  Aligned_cols=23  Identities=9%  Similarity=0.089  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCchHHHHHHHHH
Q 016486          186 GTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      +.+|.|+|.+|+||||+...|..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            46799999999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.22  Score=46.80  Aligned_cols=25  Identities=12%  Similarity=0.082  Sum_probs=20.0

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHH
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALEL  206 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~L  206 (388)
                      ..+.+...+|.|++|+||||+...+
T Consensus       159 ~al~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         159 VALTRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             HHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred             HHHcCCeEEEEcCCCCCceehHHHH
Confidence            4456788999999999999887543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.086  Score=43.32  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCchHHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      -.|+|+|.+|+||||+-..|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.089  Score=43.71  Aligned_cols=23  Identities=17%  Similarity=0.175  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -.|+|+|.+|+|||++...+...
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhhC
Confidence            36999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.076  Score=43.05  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=19.0

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|.|+|.+++||||+-.+|-.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999964

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.083  Score=43.40  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=18.7

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+|||++...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988764

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=90.07  E-value=0.17  Score=51.88  Aligned_cols=75  Identities=19%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             hhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          135 LFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       135 l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +.=.|.|+..+=.++++ .+-+|+......-.|-+...-+..-..+...-+..+|+|.|-+|||||...+.+-+.|
T Consensus        44 iLiaiNP~~~~~~y~~~-~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          44 VLVAINPYEQLPIYGED-IINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             EEEEECCSSCCSCCSHH-HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCHH-HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33345677766434444 4566665544445688766444444344455578899999999999999999876655

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.02  Score=45.87  Aligned_cols=23  Identities=13%  Similarity=0.070  Sum_probs=20.6

Q ss_pred             EEEEecCCCchHHHHHHHHHhcC
Q 016486          189 IFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+|+|+.||||||+-.+|.-.|+
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999998874

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.90  E-value=0.15  Score=52.94  Aligned_cols=76  Identities=8%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             hhhhccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          134 QLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       134 ~l~~~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      ++.=.|.||..|-.++++ .+-+|+........|-+...-+..-..+...-+..+|+|.|-+|||||.-.|.+-+.|
T Consensus        70 ~iLiavNP~k~l~iy~~~-~~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2          70 LFCIAVNPYRRLPIYTDS-VIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TEEEEECCSSCCSTTSHH-HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCCCCHH-HHHHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            333446688767545554 4566765444445688866444333334445567899999999999999988776655

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.85  E-value=0.097  Score=43.82  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.4

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+|+||||+...+...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4999999999999999988753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.077  Score=44.27  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -.|+|+|.+|+|||++...+...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999998877653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.65  E-value=0.1  Score=42.70  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999998865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.64  E-value=0.092  Score=41.32  Aligned_cols=28  Identities=11%  Similarity=-0.006  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .+..+|.++.|||||+++-.+....|..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            4678899999999999987776666643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.62  E-value=0.1  Score=43.21  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|.+|+|||++.+.+...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.60  E-value=0.21  Score=51.76  Aligned_cols=72  Identities=11%  Similarity=0.079  Sum_probs=48.6

Q ss_pred             ccCCCCceeecchhHHHHHhhccCCCCCCchhhhhhHHhhhhhhhccCCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          138 KIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       138 ~i~~~e~iw~~d~~~~v~~~~~~~~~~~wp~~~~~W~sl~~~~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .|.||..+-.++++. +-+|+........|-+...-+..-..+...-+..+|++.|-+|||||+-.|.+=+.|
T Consensus        76 avNPyk~l~ly~~~~-~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2          76 TVNPYKWLPVYNPKV-VLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             EECCSSCCGGGCTTH-HHHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCHHH-HHHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            345666554344444 456665545556788876555444445555678899999999999999999776665

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.49  E-value=0.1  Score=42.63  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998876

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.43  E-value=0.097  Score=45.85  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      +.|.|.|-=|+||||++-.||..|   |  .-.||+|-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            468889999999999998888777   3  34788883

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.32  E-value=0.097  Score=42.55  Aligned_cols=21  Identities=10%  Similarity=0.327  Sum_probs=18.6

Q ss_pred             CeEEEEecCCCchHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      ..|+|+|..|+|||++-+.+-
T Consensus         3 ~KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            469999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.32  E-value=0.061  Score=44.11  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=9.3

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999987754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.31  E-value=0.039  Score=44.17  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.7

Q ss_pred             eEEEEecCCCchHHHHHHHHHh
Q 016486          188 SIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      .|+|+|.+++||||+...|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999998653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.30  E-value=0.11  Score=46.21  Aligned_cols=18  Identities=6%  Similarity=0.193  Sum_probs=15.1

Q ss_pred             CeEEEEecCCCchHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVAL  204 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr  204 (388)
                      .+++|.|.+||||||+.-
T Consensus        25 g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SCEEEEECTTSCHHHHHH
T ss_pred             CCEEEEecCCccHHHHHH
Confidence            458899999999998764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.30  E-value=0.19  Score=44.57  Aligned_cols=27  Identities=19%  Similarity=0.116  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      .+..|+|.|.+|+||+++|+.|.+...
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            467899999999999999999987654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.18  E-value=0.096  Score=45.20  Aligned_cols=21  Identities=10%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             CeEEEEecCCCchHHHHHHHH
Q 016486          187 TSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      ..|+|+|.+|+||||+.+.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            469999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.17  E-value=0.1  Score=48.51  Aligned_cols=26  Identities=12%  Similarity=0.006  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      +...|-|+|+||+||||+-..|.+.+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998765

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.08  E-value=0.048  Score=46.10  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             hccCCCeEEEEecCCCchHHHHHH
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALE  205 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~  205 (388)
                      ..+++.+++|.++.|||||+++-.
T Consensus        36 ~l~~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          36 KVFSGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHTTCSCEEEECSSHHHHHHHHHH
T ss_pred             HHHcCCCEEEEcCCCCchhHHHHH
Confidence            344678999999999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.05  E-value=0.1  Score=46.46  Aligned_cols=23  Identities=9%  Similarity=0.182  Sum_probs=20.2

Q ss_pred             CCCeEEEEecCCCchHHHHHHHH
Q 016486          185 KGTSIFLVGDSTEVNEKVALELA  207 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LA  207 (388)
                      ...+|+|+|.+|+||||++-.|.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHh
Confidence            44689999999999999999775

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.96  E-value=0.13  Score=41.99  Aligned_cols=23  Identities=9%  Similarity=0.205  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCchHHHHHHHHHh
Q 016486          187 TSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      ..|+|+|..|+|||++-..+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999988655

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.08  Score=43.41  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=17.7

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|+|+|.+|+||||+...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999876543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.77  E-value=0.087  Score=46.52  Aligned_cols=26  Identities=12%  Similarity=0.095  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      ..-+|+|+.||||||+-.+|+-.||.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            34579999999999999999877653

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.40  E-value=0.073  Score=46.04  Aligned_cols=30  Identities=10%  Similarity=0.114  Sum_probs=24.6

Q ss_pred             hhhccCCCeEEEEecCCCchHHHHHHHHHh
Q 016486          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +...++|++++++++.|+|||+++-..+..
T Consensus        52 i~~~l~g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          52 AKRILRKESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             HHHHHTTCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             HHHHHCCCCEEEEecCCChHHHHHHHHHHH
Confidence            345668999999999999999988766643

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.22  E-value=0.13  Score=44.33  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCchHHHHHHHHHhc
Q 016486          185 KGTSIFLVGDSTEVNEKVALELAVGL  210 (388)
Q Consensus       185 ~g~~IvLIG~~GSGKSTVGr~LAk~L  210 (388)
                      .+.+++|.|++|+||||+|+.||+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999976

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.17  E-value=0.083  Score=43.34  Aligned_cols=21  Identities=14%  Similarity=0.147  Sum_probs=18.5

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|.|+|.+++||||+...|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999988853

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.00  E-value=0.12  Score=45.27  Aligned_cols=17  Identities=6%  Similarity=0.145  Sum_probs=14.3

Q ss_pred             CeEEEEecCCCchHHHH
Q 016486          187 TSIFLVGDSTEVNEKVA  203 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVG  203 (388)
                      .++.|.|.+||||||+.
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            45778899999999875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.61  E-value=0.18  Score=45.52  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=26.5

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCC
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      .-+...|+|.|++++|||+++..|++.+|-
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            345678999999999999999999999974

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.48  E-value=0.095  Score=40.12  Aligned_cols=21  Identities=19%  Similarity=0.058  Sum_probs=17.9

Q ss_pred             cCCCeEEEEecCCCchHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVAL  204 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr  204 (388)
                      -++++.+|.+++|||||.++-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            368899999999999997763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.10  E-value=0.12  Score=42.51  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=18.6

Q ss_pred             eEEEEecCCCchHHHHHHHHH
Q 016486          188 SIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      .|.|+|.+++||||+-..|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.19  Score=41.70  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      -.+|+++|.+|+||||+...+...
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999977654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.90  E-value=0.22  Score=44.00  Aligned_cols=32  Identities=6%  Similarity=0.023  Sum_probs=27.4

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .-.+..+|+|.|++++|||+++..|.+.|+-.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            34467899999999999999999999999733

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.56  E-value=0.2  Score=42.10  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=25.7

Q ss_pred             CCeEEEE-ecCCCchHHHHHHHHHhc---C--Ccceechh
Q 016486          186 GTSIFLV-GDSTEVNEKVALELAVGL---G--YTPLSTKE  219 (388)
Q Consensus       186 g~~IvLI-G~~GSGKSTVGr~LAk~L---G--~~fID~D~  219 (388)
                      ++.|.+. +--|+||||++..||..|   |  .-++|+|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4567677 678999999999888777   3  34677773

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.50  E-value=0.19  Score=41.60  Aligned_cols=24  Identities=17%  Similarity=0.045  Sum_probs=19.8

Q ss_pred             CCeEEEEecCCCchHHHHHHHHHh
Q 016486          186 GTSIFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       186 g~~IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      +.+.+|+++.|+|||.++-.++..
T Consensus        23 ~~n~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          23 ETNCLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             GSCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCcHHHHHHHHHHH
Confidence            456889999999999988877753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.44  E-value=0.29  Score=37.64  Aligned_cols=36  Identities=17%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCcceechh
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE  219 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~fID~D~  219 (388)
                      .-+.++|+|+|..|+|.|.+|+.|.++ |+.+-=.|.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~   40 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDI   40 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEES
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeC
Confidence            345689999999999999999977765 886665553

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.10  E-value=0.34  Score=41.17  Aligned_cols=31  Identities=16%  Similarity=0.026  Sum_probs=25.3

Q ss_pred             ccCCCeEEEEecCCCchHHHHHHHHHhcCCc
Q 016486          183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYT  213 (388)
Q Consensus       183 ~l~g~~IvLIG~~GSGKSTVGr~LAk~LG~~  213 (388)
                      .+++.+.+|..++|+|||-++-.++.+++.+
T Consensus        82 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          82 WLVDKRGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             HTTTSEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             HHhCCCcEEEeCCCCCceehHHhHHHHhcCc
Confidence            3455667789999999999999999888744

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.07  E-value=0.52  Score=42.32  Aligned_cols=50  Identities=12%  Similarity=0.199  Sum_probs=36.0

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceec----hhHHHHHhcCchhhhh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLST----KELLETFAKQTIDSWM  233 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~----D~lIE~~~g~sI~eif  233 (388)
                      ..|..+-|.|++|+||||++-.++...   |  .-|+|+    +...-+..|..+.+++
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~  110 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLL  110 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCE
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEE
Confidence            356889999999999999998776654   2  467776    3334455677766664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.92  E-value=0.18  Score=47.35  Aligned_cols=25  Identities=8%  Similarity=0.122  Sum_probs=22.1

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhcC
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +||.|+|.-++||||+...|-...|
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            5799999999999999999876555

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.19  Score=46.66  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=19.9

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHH
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAV  208 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk  208 (388)
                      ...++++|+|.+|||||+..+.+..
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cccceEEEEeCCCCcHHHHHHHHHH
Confidence            3457899999999999998764443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.84  E-value=0.22  Score=41.93  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             eEEEE-ecCCCchHHHHHHHHHhc---C--Ccceech
Q 016486          188 SIFLV-GDSTEVNEKVALELAVGL---G--YTPLSTK  218 (388)
Q Consensus       188 ~IvLI-G~~GSGKSTVGr~LAk~L---G--~~fID~D  218 (388)
                      .|.++ |--|+||||++..||..|   |  .-+||+|
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D   39 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            45555 888999999999888777   3  3467776

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.52  E-value=0.22  Score=44.02  Aligned_cols=32  Identities=13%  Similarity=0.133  Sum_probs=24.3

Q ss_pred             CeEEEEecCCCchHHHHHHHHHhc---CCc--ceech
Q 016486          187 TSIFLVGDSTEVNEKVALELAVGL---GYT--PLSTK  218 (388)
Q Consensus       187 ~~IvLIG~~GSGKSTVGr~LAk~L---G~~--fID~D  218 (388)
                      +.|++.|--|+||||++-.||..|   |+.  .||+|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            457789999999999777666655   544  47887

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.30  E-value=0.62  Score=41.99  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             cCCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceec----hhHHHHHhcCchhhhh
Q 016486          184 LKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLST----KELLETFAKQTIDSWM  233 (388)
Q Consensus       184 l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~----D~lIE~~~g~sI~eif  233 (388)
                      ..|+.+-|.|++||||||++-.++...   |  .-|||+    |..+-+..|....+++
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~  113 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELL  113 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCE
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEE
Confidence            357789999999999999998766544   3  577886    4445666787777765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.51  E-value=0.19  Score=43.42  Aligned_cols=21  Identities=5%  Similarity=0.067  Sum_probs=18.8

Q ss_pred             EEEEecCCCchHHHHHHHHHh
Q 016486          189 IFLVGDSTEVNEKVALELAVG  209 (388)
Q Consensus       189 IvLIG~~GSGKSTVGr~LAk~  209 (388)
                      |.|+|.+.+||||+...|-..
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhh
Confidence            999999999999998877654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=84.10  E-value=0.34  Score=44.59  Aligned_cols=32  Identities=9%  Similarity=0.151  Sum_probs=28.3

Q ss_pred             hhhccCCCeEEEEecCCCchHHHHHHHHHhcC
Q 016486          180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLG  211 (388)
Q Consensus       180 ~~~~l~g~~IvLIG~~GSGKSTVGr~LAk~LG  211 (388)
                      +.+..+|.++.|+|.+|+|||++...+++...
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            45778999999999999999999999998653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.73  E-value=0.3  Score=44.26  Aligned_cols=25  Identities=12%  Similarity=0.151  Sum_probs=21.3

Q ss_pred             eEEEEecCCCchHHHHHHHHHhcCC
Q 016486          188 SIFLVGDSTEVNEKVALELAVGLGY  212 (388)
Q Consensus       188 ~IvLIG~~GSGKSTVGr~LAk~LG~  212 (388)
                      .-+|+|..|||||++-.+++=.||.
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3468999999999999999877764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.79  E-value=0.81  Score=41.31  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             hccCCCeEEEEecCCCchHHHHHHHHHhc---C--Ccceech----hHHHHHhcCchhhhh
Q 016486          182 QLLKGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTK----ELLETFAKQTIDSWM  233 (388)
Q Consensus       182 ~~l~g~~IvLIG~~GSGKSTVGr~LAk~L---G--~~fID~D----~lIE~~~g~sI~eif  233 (388)
                      ....|..+-|.|++|+||||++-.++...   |  .-|||+.    ...-+..|....+++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il  116 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLL  116 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCE
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeE
Confidence            34457889999999999999987665433   3  4677863    334445577777754