Citrus Sinensis ID: 016543
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 387 | ||||||
| 224098828 | 381 | predicted protein [Populus trichocarpa] | 0.976 | 0.992 | 0.879 | 0.0 | |
| 224112331 | 381 | predicted protein [Populus trichocarpa] | 0.976 | 0.992 | 0.876 | 0.0 | |
| 225462301 | 414 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.920 | 0.828 | 0.0 | |
| 255564109 | 385 | conserved hypothetical protein [Ricinus | 0.976 | 0.981 | 0.818 | 0.0 | |
| 356528639 | 498 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.773 | 0.803 | 0.0 | |
| 297736105 | 368 | unnamed protein product [Vitis vinifera] | 0.948 | 0.997 | 0.826 | 1e-180 | |
| 356555234 | 392 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.961 | 0.807 | 1e-178 | |
| 147797309 | 372 | hypothetical protein VITISV_013340 [Viti | 0.956 | 0.994 | 0.768 | 1e-170 | |
| 18412368 | 417 | uncharacterized protein [Arabidopsis tha | 0.974 | 0.904 | 0.708 | 1e-161 | |
| 449448828 | 415 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.884 | 0.727 | 1e-159 |
| >gi|224098828|ref|XP_002311282.1| predicted protein [Populus trichocarpa] gi|222851102|gb|EEE88649.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/382 (87%), Positives = 359/382 (93%), Gaps = 4/382 (1%)
Query: 1 MSSKARRKQRWCTQTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNF 60
M S+AR KQRWCTQTLTPL+EGPDP+M EEG+KKESSWE+IREWF +Q+G+S+G NNF
Sbjct: 1 MGSRARWKQRWCTQTLTPLLEGPDPDMQEEGNKKESSWEIIREWFRLQRGLSAG---NNF 57
Query: 61 SMSLEGSSIPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYL 120
++SL GS IPAKRQDLRLLLGVLGCPLAPIPLVNDPI RIHIK+ PIE S+AHYIIQQYL
Sbjct: 58 TVSLYGS-IPAKRQDLRLLLGVLGCPLAPIPLVNDPIHRIHIKNTPIENSAAHYIIQQYL 116
Query: 121 AATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWS 180
A+TGCLKQQK KNMY+ G+VKMV CETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWS
Sbjct: 117 ASTGCLKQQKCMKNMYSAGSVKMVRCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWS 176
Query: 181 LELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCL 240
LELVVG NKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPK TA+LFAKAQCL
Sbjct: 177 LELVVGENKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKNTANLFAKAQCL 236
Query: 241 GEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQ 300
GEKRIG+D+CFVLKVAADR AV ERSEGPAEV+RHVLYGYFCQKSGLLIYLEDSHLTRVQ
Sbjct: 237 GEKRIGEDDCFVLKVAADREAVFERSEGPAEVLRHVLYGYFCQKSGLLIYLEDSHLTRVQ 296
Query: 301 TPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRID 360
TPEN+TIYWETTIGSSIGDY DVDGVLIAHQGRSIATVFRF ELS+QHSRTRMEE+WRID
Sbjct: 297 TPENETIYWETTIGSSIGDYRDVDGVLIAHQGRSIATVFRFEELSVQHSRTRMEEVWRID 356
Query: 361 DVVFNVPGLSMDYFIPPADIID 382
DVVFNVPGLSMDYFIPPADI D
Sbjct: 357 DVVFNVPGLSMDYFIPPADIFD 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112331|ref|XP_002316155.1| predicted protein [Populus trichocarpa] gi|222865195|gb|EEF02326.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225462301|ref|XP_002265161.1| PREDICTED: uncharacterized protein LOC100246643 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255564109|ref|XP_002523052.1| conserved hypothetical protein [Ricinus communis] gi|223537709|gb|EEF39331.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356528639|ref|XP_003532907.1| PREDICTED: uncharacterized protein LOC100791744 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297736105|emb|CBI24143.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356555234|ref|XP_003545939.1| PREDICTED: uncharacterized protein LOC100810457 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|147797309|emb|CAN76006.1| hypothetical protein VITISV_013340 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|18412368|ref|NP_565208.1| uncharacterized protein [Arabidopsis thaliana] gi|15450719|gb|AAK96631.1| At1g79420/T8K14_16 [Arabidopsis thaliana] gi|22655486|gb|AAM98335.1| At1g79420/T8K14_16 [Arabidopsis thaliana] gi|332198119|gb|AEE36240.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449448828|ref|XP_004142167.1| PREDICTED: uncharacterized protein LOC101217200 [Cucumis sativus] gi|449503445|ref|XP_004162006.1| PREDICTED: uncharacterized LOC101217200 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 387 | ||||||
| TAIR|locus:2206425 | 417 | AT1G79420 "AT1G79420" [Arabido | 0.974 | 0.904 | 0.690 | 4e-145 | |
| TAIR|locus:2101510 | 485 | AT3G19540 "AT3G19540" [Arabido | 0.914 | 0.729 | 0.501 | 2.2e-96 | |
| TAIR|locus:2007268 | 494 | AT1G49840 "AT1G49840" [Arabido | 0.922 | 0.722 | 0.490 | 1.3e-93 | |
| TAIR|locus:2199191 | 433 | AT1G27690 "AT1G27690" [Arabido | 0.950 | 0.849 | 0.480 | 1.2e-90 | |
| TAIR|locus:2166414 | 439 | AT5G05840 "AT5G05840" [Arabido | 0.932 | 0.822 | 0.445 | 1.6e-79 | |
| TAIR|locus:2144128 | 368 | AT5G06610 "AT5G06610" [Arabido | 0.731 | 0.769 | 0.511 | 8.5e-77 | |
| TAIR|locus:2173634 | 370 | AT5G66740 "AT5G66740" [Arabido | 0.705 | 0.737 | 0.496 | 3.6e-66 | |
| TAIR|locus:2078946 | 438 | AT3G55720 "AT3G55720" [Arabido | 0.754 | 0.666 | 0.431 | 3.3e-63 | |
| TAIR|locus:2025207 | 395 | AT1G75160 "AT1G75160" [Arabido | 0.932 | 0.913 | 0.381 | 3.4e-61 |
| TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
Identities = 272/394 (69%), Positives = 319/394 (80%)
Query: 7 RKQRWCT--QTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNFSMSL 64
RKQRW T Q LTPLMEGPDP+M +E +KKESSWE IREWF + KGIS + +
Sbjct: 9 RKQRWGTPPQALTPLMEGPDPDMQDERTKKESSWEAIREWFKVHKGISGNMSSPSVQPLC 68
Query: 65 EGSSIPAKRQDXXXXXXXXXXXXAPIPLV------NDPIL-RIHIKDIPIETSSAHYIIQ 117
+PAK QD API +V +DP+L IK++P ETS+AHYIIQ
Sbjct: 69 NSYDVPAKGQDLRLLLGVLGCPLAPISVVVSDLFPDDPLLGSFQIKNVPFETSTAHYIIQ 128
Query: 118 QYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGT----RSGESGCFVLWQ 173
QYLAATGCLK+ K AKNMYATG +KM CCETEI++GK+VK+LG RSG+SGCFVLWQ
Sbjct: 129 QYLAATGCLKRAKAAKNMYATGIMKMSCCETEIAAGKSVKTLGGGGNGRSGDSGCFVLWQ 188
Query: 174 MLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASL 233
M PGMWSLELV+GG K+I+GSDGKTVWRHTPWLGTHAAKGPQRPLRR+IQGLDPK TASL
Sbjct: 189 MQPGMWSLELVLGGTKLISGSDGKTVWRHTPWLGTHAAKGPQRPLRRLIQGLDPKTTASL 248
Query: 234 FAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEG--PAEVIRHVLYGYFCQKSGLLIYL 291
FAKAQCLGE+RIGDD+CFVLKV+ADR +++ER++ PAEVIRH LYGYFCQKSGLL+YL
Sbjct: 249 FAKAQCLGERRIGDDDCFVLKVSADRDSLLERNDAGAPAEVIRHALYGYFCQKSGLLVYL 308
Query: 292 EDSHLTRVQT--PENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHS 349
EDSHLTRV T PE++ +YWETTIG+SIGDY DVDGV +AH GR++ATVFRFGE S+Q+S
Sbjct: 309 EDSHLTRVMTISPEDEAVYWETTIGTSIGDYRDVDGVAVAHCGRAVATVFRFGETSLQYS 368
Query: 350 RTRMEEMWRIDDVVFNVPGLSMDYFIPPADIIDN 383
RTRMEE+WRIDDVVF+VPGLS+D FIPPADI ++
Sbjct: 369 RTRMEEIWRIDDVVFDVPGLSLDSFIPPADIFED 402
|
|
| TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_Genewise1_v1.C_LG_VIII1608 | hypothetical protein (381 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 387 | |||
| pfam04788 | 243 | pfam04788, DUF620, Protein of unknown function (DU | 1e-150 |
| >gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) | Back alignment and domain information |
|---|
Score = 423 bits (1090), Expect = e-150
Identities = 173/243 (71%), Positives = 196/243 (80%)
Query: 135 MYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGS 194
MYA G VKM+ E EI +GK+V+ SGESG FVLWQM P MW +ELVVGG+KV AGS
Sbjct: 1 MYAMGKVKMIASEFEIGNGKSVRRNSGGSGESGGFVLWQMKPDMWYVELVVGGSKVSAGS 60
Query: 195 DGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLK 254
DGK VWRHTPWLG HAAKGP RPLRR +QGLDPK TASLFA AQC+GEKR+ ++CFVLK
Sbjct: 61 DGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGEDCFVLK 120
Query: 255 VAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIG 314
+ AD AA+ RS+GPAEVIRH L+GYF Q+SGLL+ LEDSHLTR+QTP D +YWETTI
Sbjct: 121 LDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVYWETTIE 180
Query: 315 SSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYF 374
SS+GDY VDGV+IAH GRS+ T+FRFGE S HSRTRMEE W IDDV FNVPGLS D F
Sbjct: 181 SSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSHSRTRMEEAWTIDDVAFNVPGLSPDSF 240
Query: 375 IPP 377
IPP
Sbjct: 241 IPP 243
|
Family of uncharacterized proteins. Length = 243 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 387 | |||
| PF04788 | 245 | DUF620: Protein of unknown function (DUF620); Inte | 100.0 |
| >PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-140 Score=980.81 Aligned_cols=243 Identities=65% Similarity=1.110 Sum_probs=236.9
Q ss_pred hhhccceeeEEEeeeccCCccccccCCcccccceEEEeeeCCCCeEEEEEeeCceEEeccCCceeeecCCCCcCcccCCC
Q 016543 135 MYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGP 214 (387)
Q Consensus 135 mya~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~~Pd~W~~ELvv~G~Kv~AGsdGkvaWRhTpw~g~HAakGp 214 (387)
|||||||||+++||+.+++...+..+++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||||||
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp 80 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP 80 (245)
T ss_pred CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence 89999999999999998765554344678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhcCCccceecceeceeeeceeeeCCcceeEEEeecchhhhhhccCCCceEEEeeeecccccccceeEEeecc
Q 016543 215 QRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDS 294 (387)
Q Consensus 215 ~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS 294 (387)
||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++|||||||||||||||||
T Consensus 81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS 160 (245)
T PF04788_consen 81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS 160 (245)
T ss_pred CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeec--CCCCeeEEeeccccccccccccCceeeecCCcceEEEEeecCcccccccceeeeeeeeeeeeccCCCCCCc
Q 016543 295 HLTRVQT--PENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMD 372 (387)
Q Consensus 295 ~Ltri~~--~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV~GLs~D 372 (387)
||||||+ +++++|||||||||+|+|||+||||||||+|||+||||||||++++|+||||||+|+||||||||||||||
T Consensus 161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D 240 (245)
T PF04788_consen 161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD 240 (245)
T ss_pred eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence 9999999 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016543 373 YFIPP 377 (387)
Q Consensus 373 cFiPP 377 (387)
|||||
T Consensus 241 cFiPP 245 (245)
T PF04788_consen 241 CFIPP 245 (245)
T ss_pred cccCC
Confidence 99999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 387 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 74/301 (24%)
Query: 101 HIKDIPIETSSAHY----IIQQYLAA----TGCLKQQKRAKNMYATGTVKMVCCETEISS 152
H + ET Y I+ + A C Q K++ + + I
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID------HI-- 54
Query: 153 GKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAA- 211
+ ++ SG L W+L +++ + + + +L +
Sbjct: 55 ------IMSKDAVSGTLRL------FWTLLS--KQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 212 --KGPQRPLRRIIQGLDPKITAS-LFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEG 268
+ P R I+ D + +FAK R+ + LK+ R A++E
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRL---QP-YLKL---RQALLELR-- 148
Query: 269 PAEVIRHVLYGYF-CQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGD-------- 319
PA+ + ++ G K+ + + + S+ +VQ + I+W + +
Sbjct: 149 PAKNV--LIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFW-LNLKNCNSPETVLEMLQ 203
Query: 320 --YSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWR-----IDDV-------VFN 365
+D + S R + + R + + + +V FN
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 366 V 366
+
Sbjct: 264 L 264
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 387 | |||
| 3buu_A | 229 | Uncharacterized LOLA superfamily protein NE2245; P | 97.59 | |
| 3bk5_A | 237 | Putative outer membrane lipoprotein-sorting prote; | 97.07 |
| >3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0042 Score=54.31 Aligned_cols=207 Identities=11% Similarity=0.092 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHhhCchhhhhhhhhhhhccceeeEEEeeeccCCccccccCCcccccceEEEeeeCCCCeEEEEE----e
Q 016543 110 SSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELV----V 185 (387)
Q Consensus 110 SsA~YIvqQY~AAtGg~k~~~~v~smya~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~~Pd~W~~ELv----v 185 (387)
-+|+=|+++..++.++. ++..+. ++|.... ++| ....--+.+|.+.++.-++.+. +
T Consensus 7 ~~a~eil~~~~~~~~~~------~~~~~~--~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~P~~~ 66 (229)
T 3buu_A 7 VTAQSILEKADEIRFPQ------DSFQVN--VAIRTAA---PDH---------AEDLYRYQVLSKGNENSIVMITEPASE 66 (229)
T ss_dssp CCHHHHHHHHHHHHSCS------SCEEEE--EEEEEEE---TTE---------ECCCEEEEEEEETTTEEEEEEEESTTT
T ss_pred CCHHHHHHHHHhhccCC------CCeEEE--EEEEEEc---CCC---------ceEEEEEEEEecCCceEEEEEeCChhh
Confidence 36788999998887753 223332 3343221 111 0122346778888887666554 4
Q ss_pred eCceEEeccCCceeeecCCCCcCcccCCCCCh--h----hhhhhcCCccceecceeceeeeceeeeCCcceeEEEeecch
Q 016543 186 GGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRP--L----RRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADR 259 (387)
Q Consensus 186 ~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RP--L----RR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~ 259 (387)
.|..+. .+|+-+|--.|-+..- -+=++.+ + -.-+.++++ +. .-+...+|++.++|.+|++|++.+..
T Consensus 67 ~g~~~l--~~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~~-~y~~~l~g~~~v~g~~~~vl~~~pk~ 139 (229)
T 3buu_A 67 RGQAIL--MKGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---TG-DYHPQLLRNESIDDEDYYVLELTGID 139 (229)
T ss_dssp TTCEEE--EETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---BT-TEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred cCeEEe--ecCCceEEECCCCCce-EEccCcccccccccccccccCCc---cc-cCceEEeeeeeeCCeeEEEEEEEecC
Confidence 566666 3899999999977542 1111111 1 112222221 11 22447899999999999999998866
Q ss_pred hhhhhccCCCceEEEeeeecccccccceeEEeecceeeeeecCCCCeeEEeeccccccccccccCceeeecCCcceEEEE
Q 016543 260 AAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVF 339 (387)
Q Consensus 260 ~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~ 339 (387)
.. +. .=+.. =|++++|+|+++.|- . ..+.--|++.. ..+|..+||+.+++. .
T Consensus 140 ~~---~~-----y~k~~--lwiD~~t~~p~k~~~---~-----d~~G~l~k~~~---~~~~~~~~g~~~~~~-------~ 191 (229)
T 3buu_A 140 RS---VT-----YQKVL--LWVNQSNFRPYKAEF---Y-----SVSGRLLKTSR---YENFDNILGEMRPTR-------I 191 (229)
T ss_dssp TT---SS-----CSEEE--EEEETTTCCEEEEEE---E-----CTTSCEEEEEE---EEEEEEETTEEEEEE-------E
T ss_pred CC---Cc-----eEEEE--EEEECCCCcEEEEEE---E-----cCCCCEEEEEE---eeccEEECCEEEeEE-------E
Confidence 52 11 00111 267888999888754 1 11223455433 566777787666543 1
Q ss_pred eecC-cccccccceeeeeeeeeeeeccCCCCCCcccCCCc
Q 016543 340 RFGE-LSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPA 378 (387)
Q Consensus 340 RfGe-~~~~h~~TrMEE~WtIeeV~FNV~GLs~DcFiPP~ 378 (387)
.+-+ ...+| .|.|+ +.++.|| +|+-+.|-|..
T Consensus 192 ~~~d~~~~g~-~t~~~----~~~~~~~--~l~~~~Ft~~~ 224 (229)
T 3buu_A 192 IMEDALKSGE-VSVLD----YSDMKLR--DLPDKIFTKDY 224 (229)
T ss_dssp EEEESSSSCC-EEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred EEEeCcCCCC-EEEEE----EeeeEeC--CCChHhCCHHH
Confidence 2111 11223 45554 6689998 89888886643
|
| >3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00