Citrus Sinensis ID: 016543


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MSSKARRKQRWCTQTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNFSMSLEGSSIPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADIIDNEKSP
cccHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHccccEEEEEEEEEEEEEEEEccccccccccccccccccEEEEEcccccEEEEEEEccEEEEEcccccEEEEcccccccccccccccHHHHHHHccccEEEEcccccEEEEEEEEEccccEEEEEEEccHHHHHHHcccccEEEEEEEEEEEEcccccEEEEEccEEEEEEcccccEEEEEEccccccccccccccEEEEcccccEEEEEEEccccccccccEEEEEEEEEEEEcccccccccccccccccccccccc
ccHHHHHHccccHHHcccHccccccHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcEEEEEEEEEccccccEEEEccccccccccEEEEEccccEEEEEEEEEccEEEEccccEEEEEEccccccccccccccHHHHHHccccHHHHHHHHHccEEEcEEEEccccEEEEEEEccHHHHHHccccccEEEEEEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEEcHccHHccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEEEEccccccccccccHHHHHcccccc
msskarrkqrwctqtltplmegpdpemleegskkesSWEVIREWFGIqkgissgtnhnnfsmslegssipakRQDLRLLLGvlgcplapiplvndpilrihikdipietsSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCEteissgknvkslgtrsgesgCFVLWQMLPGMWSLELVVggnkviagsdgktvwrhtpwlgthaakgpqrplrriiqgldpKITASLFAKAQClgekrigddecFVLKVAADRAAVmersegpaEVIRHVLYGYfcqksglliyledshltrvqtpendtiYWETTigssigdysdvdGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDvvfnvpglsmdyfippadiidneksp
msskarrkqrwctqtltplmegpdpemLEEGSKKESSWEVIREWFGIQKGISSGTNHNNFSMSLEGSSIPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEissgknvkslgtrSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWlgthaakgpqrpLRRIIQGLDPKITASLFAKAQCLgekrigddeCFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSmdyfippadiidneksp
MSSKARRKQRWCTQTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNFSMSLEGSSIPAKRQDlrlllgvlgcplAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADIIDNEKSP
*************************************WEVIREWFGIQKGI**********************QDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADII******
***************LTPLMEGPD*******************WFGIQK***********************RQDLRLLLGVLGCPLAPIPLVNDP**********IETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMV***********************CFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWR*******************IIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAA**************VIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADII******
**********WCTQTLTPLMEGP**************WEVIREWFGIQKGISSGTNHNNFSMSLEGSSIPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADIIDNEKSP
*************QTLTPLMEGPDPEMLE**************W************************IPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADIID*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSKARRKQRWCTQTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNFSMSLEGSSIPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPADIIDNEKSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
224098828381 predicted protein [Populus trichocarpa] 0.976 0.992 0.879 0.0
224112331381 predicted protein [Populus trichocarpa] 0.976 0.992 0.876 0.0
225462301414 PREDICTED: uncharacterized protein LOC10 0.984 0.920 0.828 0.0
255564109385 conserved hypothetical protein [Ricinus 0.976 0.981 0.818 0.0
356528639 498 PREDICTED: uncharacterized protein LOC10 0.994 0.773 0.803 0.0
297736105368 unnamed protein product [Vitis vinifera] 0.948 0.997 0.826 1e-180
356555234392 PREDICTED: uncharacterized protein LOC10 0.974 0.961 0.807 1e-178
147797309372 hypothetical protein VITISV_013340 [Viti 0.956 0.994 0.768 1e-170
18412368417 uncharacterized protein [Arabidopsis tha 0.974 0.904 0.708 1e-161
449448828415 PREDICTED: uncharacterized protein LOC10 0.948 0.884 0.727 1e-159
>gi|224098828|ref|XP_002311282.1| predicted protein [Populus trichocarpa] gi|222851102|gb|EEE88649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/382 (87%), Positives = 359/382 (93%), Gaps = 4/382 (1%)

Query: 1   MSSKARRKQRWCTQTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNF 60
           M S+AR KQRWCTQTLTPL+EGPDP+M EEG+KKESSWE+IREWF +Q+G+S+G   NNF
Sbjct: 1   MGSRARWKQRWCTQTLTPLLEGPDPDMQEEGNKKESSWEIIREWFRLQRGLSAG---NNF 57

Query: 61  SMSLEGSSIPAKRQDLRLLLGVLGCPLAPIPLVNDPILRIHIKDIPIETSSAHYIIQQYL 120
           ++SL GS IPAKRQDLRLLLGVLGCPLAPIPLVNDPI RIHIK+ PIE S+AHYIIQQYL
Sbjct: 58  TVSLYGS-IPAKRQDLRLLLGVLGCPLAPIPLVNDPIHRIHIKNTPIENSAAHYIIQQYL 116

Query: 121 AATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWS 180
           A+TGCLKQQK  KNMY+ G+VKMV CETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWS
Sbjct: 117 ASTGCLKQQKCMKNMYSAGSVKMVRCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWS 176

Query: 181 LELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCL 240
           LELVVG NKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPK TA+LFAKAQCL
Sbjct: 177 LELVVGENKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKNTANLFAKAQCL 236

Query: 241 GEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQ 300
           GEKRIG+D+CFVLKVAADR AV ERSEGPAEV+RHVLYGYFCQKSGLLIYLEDSHLTRVQ
Sbjct: 237 GEKRIGEDDCFVLKVAADREAVFERSEGPAEVLRHVLYGYFCQKSGLLIYLEDSHLTRVQ 296

Query: 301 TPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRID 360
           TPEN+TIYWETTIGSSIGDY DVDGVLIAHQGRSIATVFRF ELS+QHSRTRMEE+WRID
Sbjct: 297 TPENETIYWETTIGSSIGDYRDVDGVLIAHQGRSIATVFRFEELSVQHSRTRMEEVWRID 356

Query: 361 DVVFNVPGLSMDYFIPPADIID 382
           DVVFNVPGLSMDYFIPPADI D
Sbjct: 357 DVVFNVPGLSMDYFIPPADIFD 378




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112331|ref|XP_002316155.1| predicted protein [Populus trichocarpa] gi|222865195|gb|EEF02326.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462301|ref|XP_002265161.1| PREDICTED: uncharacterized protein LOC100246643 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564109|ref|XP_002523052.1| conserved hypothetical protein [Ricinus communis] gi|223537709|gb|EEF39331.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356528639|ref|XP_003532907.1| PREDICTED: uncharacterized protein LOC100791744 [Glycine max] Back     alignment and taxonomy information
>gi|297736105|emb|CBI24143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555234|ref|XP_003545939.1| PREDICTED: uncharacterized protein LOC100810457 [Glycine max] Back     alignment and taxonomy information
>gi|147797309|emb|CAN76006.1| hypothetical protein VITISV_013340 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18412368|ref|NP_565208.1| uncharacterized protein [Arabidopsis thaliana] gi|15450719|gb|AAK96631.1| At1g79420/T8K14_16 [Arabidopsis thaliana] gi|22655486|gb|AAM98335.1| At1g79420/T8K14_16 [Arabidopsis thaliana] gi|332198119|gb|AEE36240.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449448828|ref|XP_004142167.1| PREDICTED: uncharacterized protein LOC101217200 [Cucumis sativus] gi|449503445|ref|XP_004162006.1| PREDICTED: uncharacterized LOC101217200 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2206425417 AT1G79420 "AT1G79420" [Arabido 0.974 0.904 0.690 4e-145
TAIR|locus:2101510485 AT3G19540 "AT3G19540" [Arabido 0.914 0.729 0.501 2.2e-96
TAIR|locus:2007268494 AT1G49840 "AT1G49840" [Arabido 0.922 0.722 0.490 1.3e-93
TAIR|locus:2199191433 AT1G27690 "AT1G27690" [Arabido 0.950 0.849 0.480 1.2e-90
TAIR|locus:2166414439 AT5G05840 "AT5G05840" [Arabido 0.932 0.822 0.445 1.6e-79
TAIR|locus:2144128368 AT5G06610 "AT5G06610" [Arabido 0.731 0.769 0.511 8.5e-77
TAIR|locus:2173634370 AT5G66740 "AT5G66740" [Arabido 0.705 0.737 0.496 3.6e-66
TAIR|locus:2078946438 AT3G55720 "AT3G55720" [Arabido 0.754 0.666 0.431 3.3e-63
TAIR|locus:2025207395 AT1G75160 "AT1G75160" [Arabido 0.932 0.913 0.381 3.4e-61
TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 272/394 (69%), Positives = 319/394 (80%)

Query:     7 RKQRWCT--QTLTPLMEGPDPEMLEEGSKKESSWEVIREWFGIQKGISSGTNHNNFSMSL 64
             RKQRW T  Q LTPLMEGPDP+M +E +KKESSWE IREWF + KGIS   +  +     
Sbjct:     9 RKQRWGTPPQALTPLMEGPDPDMQDERTKKESSWEAIREWFKVHKGISGNMSSPSVQPLC 68

Query:    65 EGSSIPAKRQDXXXXXXXXXXXXAPIPLV------NDPIL-RIHIKDIPIETSSAHYIIQ 117
                 +PAK QD            API +V      +DP+L    IK++P ETS+AHYIIQ
Sbjct:    69 NSYDVPAKGQDLRLLLGVLGCPLAPISVVVSDLFPDDPLLGSFQIKNVPFETSTAHYIIQ 128

Query:   118 QYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGT----RSGESGCFVLWQ 173
             QYLAATGCLK+ K AKNMYATG +KM CCETEI++GK+VK+LG     RSG+SGCFVLWQ
Sbjct:   129 QYLAATGCLKRAKAAKNMYATGIMKMSCCETEIAAGKSVKTLGGGGNGRSGDSGCFVLWQ 188

Query:   174 MLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASL 233
             M PGMWSLELV+GG K+I+GSDGKTVWRHTPWLGTHAAKGPQRPLRR+IQGLDPK TASL
Sbjct:   189 MQPGMWSLELVLGGTKLISGSDGKTVWRHTPWLGTHAAKGPQRPLRRLIQGLDPKTTASL 248

Query:   234 FAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEG--PAEVIRHVLYGYFCQKSGLLIYL 291
             FAKAQCLGE+RIGDD+CFVLKV+ADR +++ER++   PAEVIRH LYGYFCQKSGLL+YL
Sbjct:   249 FAKAQCLGERRIGDDDCFVLKVSADRDSLLERNDAGAPAEVIRHALYGYFCQKSGLLVYL 308

Query:   292 EDSHLTRVQT--PENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHS 349
             EDSHLTRV T  PE++ +YWETTIG+SIGDY DVDGV +AH GR++ATVFRFGE S+Q+S
Sbjct:   309 EDSHLTRVMTISPEDEAVYWETTIGTSIGDYRDVDGVAVAHCGRAVATVFRFGETSLQYS 368

Query:   350 RTRMEEMWRIDDVVFNVPGLSMDYFIPPADIIDN 383
             RTRMEE+WRIDDVVF+VPGLS+D FIPPADI ++
Sbjct:   369 RTRMEEIWRIDDVVFDVPGLSLDSFIPPADIFED 402




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_Genewise1_v1.C_LG_VIII1608
hypothetical protein (381 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
pfam04788243 pfam04788, DUF620, Protein of unknown function (DU 1e-150
>gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) Back     alignment and domain information
 Score =  423 bits (1090), Expect = e-150
 Identities = 173/243 (71%), Positives = 196/243 (80%)

Query: 135 MYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGS 194
           MYA G VKM+  E EI +GK+V+     SGESG FVLWQM P MW +ELVVGG+KV AGS
Sbjct: 1   MYAMGKVKMIASEFEIGNGKSVRRNSGGSGESGGFVLWQMKPDMWYVELVVGGSKVSAGS 60

Query: 195 DGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLK 254
           DGK VWRHTPWLG HAAKGP RPLRR +QGLDPK TASLFA AQC+GEKR+  ++CFVLK
Sbjct: 61  DGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGEDCFVLK 120

Query: 255 VAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIG 314
           + AD AA+  RS+GPAEVIRH L+GYF Q+SGLL+ LEDSHLTR+QTP  D +YWETTI 
Sbjct: 121 LDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVYWETTIE 180

Query: 315 SSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMDYF 374
           SS+GDY  VDGV+IAH GRS+ T+FRFGE S  HSRTRMEE W IDDV FNVPGLS D F
Sbjct: 181 SSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSHSRTRMEEAWTIDDVAFNVPGLSPDSF 240

Query: 375 IPP 377
           IPP
Sbjct: 241 IPP 243


Family of uncharacterized proteins. Length = 243

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PF04788245 DUF620: Protein of unknown function (DUF620); Inte 100.0
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins Back     alignment and domain information
Probab=100.00  E-value=3.2e-140  Score=980.81  Aligned_cols=243  Identities=65%  Similarity=1.110  Sum_probs=236.9

Q ss_pred             hhhccceeeEEEeeeccCCccccccCCcccccceEEEeeeCCCCeEEEEEeeCceEEeccCCceeeecCCCCcCcccCCC
Q 016543          135 MYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAAKGP  214 (387)
Q Consensus       135 mya~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~~Pd~W~~ELvv~G~Kv~AGsdGkvaWRhTpw~g~HAakGp  214 (387)
                      |||||||||+++||+.+++...+..+++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||||||
T Consensus         1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp   80 (245)
T PF04788_consen    1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP   80 (245)
T ss_pred             CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence            89999999999999998765554344678999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhhhcCCccceecceeceeeeceeeeCCcceeEEEeecchhhhhhccCCCceEEEeeeecccccccceeEEeecc
Q 016543          215 QRPLRRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDS  294 (387)
Q Consensus       215 ~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS  294 (387)
                      ||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++|||||||||||||||||
T Consensus        81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS  160 (245)
T PF04788_consen   81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS  160 (245)
T ss_pred             CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeec--CCCCeeEEeeccccccccccccCceeeecCCcceEEEEeecCcccccccceeeeeeeeeeeeccCCCCCCc
Q 016543          295 HLTRVQT--PENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWRIDDVVFNVPGLSMD  372 (387)
Q Consensus       295 ~Ltri~~--~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV~GLs~D  372 (387)
                      ||||||+  +++++|||||||||+|+|||+||||||||+|||+||||||||++++|+||||||+|+||||||||||||||
T Consensus       161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D  240 (245)
T PF04788_consen  161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD  240 (245)
T ss_pred             eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence            9999999  78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 016543          373 YFIPP  377 (387)
Q Consensus       373 cFiPP  377 (387)
                      |||||
T Consensus       241 cFiPP  245 (245)
T PF04788_consen  241 CFIPP  245 (245)
T ss_pred             cccCC
Confidence            99999




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 74/301 (24%)

Query: 101 HIKDIPIETSSAHY----IIQQYLAA----TGCLKQQKRAKNMYATGTVKMVCCETEISS 152
           H   +  ET    Y    I+  +  A      C   Q   K++ +   +        I  
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID------HI-- 54

Query: 153 GKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGGNKVIAGSDGKTVWRHTPWLGTHAA- 211
                 + ++   SG   L       W+L       +++     + +  +  +L +    
Sbjct: 55  ------IMSKDAVSGTLRL------FWTLLS--KQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 212 --KGPQRPLRRIIQGLDPKITAS-LFAKAQCLGEKRIGDDECFVLKVAADRAAVMERSEG 268
             + P    R  I+  D     + +FAK       R+   +   LK+   R A++E    
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRL---QP-YLKL---RQALLELR-- 148

Query: 269 PAEVIRHVLYGYF-CQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGD-------- 319
           PA+ +  ++ G     K+ + + +  S+  +VQ   +  I+W   + +            
Sbjct: 149 PAKNV--LIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFW-LNLKNCNSPETVLEMLQ 203

Query: 320 --YSDVDGVLIAHQGRSIATVFRFGELSIQHSRTRMEEMWR-----IDDV-------VFN 365
                +D    +    S     R   +  +  R    + +      + +V        FN
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 366 V 366
           +
Sbjct: 264 L 264


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3buu_A229 Uncharacterized LOLA superfamily protein NE2245; P 97.59
3bk5_A237 Putative outer membrane lipoprotein-sorting prote; 97.07
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} Back     alignment and structure
Probab=97.59  E-value=0.0042  Score=54.31  Aligned_cols=207  Identities=11%  Similarity=0.092  Sum_probs=117.9

Q ss_pred             chhHHHHHHHHHhhCchhhhhhhhhhhhccceeeEEEeeeccCCccccccCCcccccceEEEeeeCCCCeEEEEE----e
Q 016543          110 SSAHYIIQQYLAATGCLKQQKRAKNMYATGTVKMVCCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELV----V  185 (387)
Q Consensus       110 SsA~YIvqQY~AAtGg~k~~~~v~smya~GkVrM~~se~~~~~~~~v~~~g~~~~e~G~FVlWQ~~Pd~W~~ELv----v  185 (387)
                      -+|+=|+++..++.++.      ++..+.  ++|....   ++|         ....--+.+|.+.++.-++.+.    +
T Consensus         7 ~~a~eil~~~~~~~~~~------~~~~~~--~~~~~~~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~P~~~   66 (229)
T 3buu_A            7 VTAQSILEKADEIRFPQ------DSFQVN--VAIRTAA---PDH---------AEDLYRYQVLSKGNENSIVMITEPASE   66 (229)
T ss_dssp             CCHHHHHHHHHHHHSCS------SCEEEE--EEEEEEE---TTE---------ECCCEEEEEEEETTTEEEEEEEESTTT
T ss_pred             CCHHHHHHHHHhhccCC------CCeEEE--EEEEEEc---CCC---------ceEEEEEEEEecCCceEEEEEeCChhh
Confidence            36788999998887753      223332  3343221   111         0122346778888887666554    4


Q ss_pred             eCceEEeccCCceeeecCCCCcCcccCCCCCh--h----hhhhhcCCccceecceeceeeeceeeeCCcceeEEEeecch
Q 016543          186 GGNKVIAGSDGKTVWRHTPWLGTHAAKGPQRP--L----RRIIQGLDPKITASLFAKAQCLGEKRIGDDECFVLKVAADR  259 (387)
Q Consensus       186 ~G~Kv~AGsdGkvaWRhTpw~g~HAakGp~RP--L----RR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFvLkl~a~~  259 (387)
                      .|..+.  .+|+-+|--.|-+..- -+=++.+  +    -.-+.++++   +. .-+...+|++.++|.+|++|++.+..
T Consensus        67 ~g~~~l--~~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~---~~-~y~~~l~g~~~v~g~~~~vl~~~pk~  139 (229)
T 3buu_A           67 RGQAIL--MKGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANF---TG-DYHPQLLRNESIDDEDYYVLELTGID  139 (229)
T ss_dssp             TTCEEE--EETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCS---BT-TEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             cCeEEe--ecCCceEEECCCCCce-EEccCcccccccccccccccCCc---cc-cCceEEeeeeeeCCeeEEEEEEEecC
Confidence            566666  3899999999977542 1111111  1    112222221   11 22447899999999999999998866


Q ss_pred             hhhhhccCCCceEEEeeeecccccccceeEEeecceeeeeecCCCCeeEEeeccccccccccccCceeeecCCcceEEEE
Q 016543          260 AAVMERSEGPAEVIRHVLYGYFCQKSGLLIYLEDSHLTRVQTPENDTIYWETTIGSSIGDYSDVDGVLIAHQGRSIATVF  339 (387)
Q Consensus       260 ~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGv~IAH~G~t~vtl~  339 (387)
                      ..   +.     .=+..  =|++++|+|+++.|-   .     ..+.--|++..   ..+|..+||+.+++.       .
T Consensus       140 ~~---~~-----y~k~~--lwiD~~t~~p~k~~~---~-----d~~G~l~k~~~---~~~~~~~~g~~~~~~-------~  191 (229)
T 3buu_A          140 RS---VT-----YQKVL--LWVNQSNFRPYKAEF---Y-----SVSGRLLKTSR---YENFDNILGEMRPTR-------I  191 (229)
T ss_dssp             TT---SS-----CSEEE--EEEETTTCCEEEEEE---E-----CTTSCEEEEEE---EEEEEEETTEEEEEE-------E
T ss_pred             CC---Cc-----eEEEE--EEEECCCCcEEEEEE---E-----cCCCCEEEEEE---eeccEEECCEEEeEE-------E
Confidence            52   11     00111  267888999888754   1     11223455433   566777787666543       1


Q ss_pred             eecC-cccccccceeeeeeeeeeeeccCCCCCCcccCCCc
Q 016543          340 RFGE-LSIQHSRTRMEEMWRIDDVVFNVPGLSMDYFIPPA  378 (387)
Q Consensus       340 RfGe-~~~~h~~TrMEE~WtIeeV~FNV~GLs~DcFiPP~  378 (387)
                      .+-+ ...+| .|.|+    +.++.||  +|+-+.|-|..
T Consensus       192 ~~~d~~~~g~-~t~~~----~~~~~~~--~l~~~~Ft~~~  224 (229)
T 3buu_A          192 IMEDALKSGE-VSVLD----YSDMKLR--DLPDKIFTKDY  224 (229)
T ss_dssp             EEEESSSSCC-EEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred             EEEeCcCCCC-EEEEE----EeeeEeC--CCChHhCCHHH
Confidence            2111 11223 45554    6689998  89888886643



>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00