Citrus Sinensis ID: 016686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSSTQDAMGLR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEccccccccHHHcccccccccEEEccccccccHHHHHHHcccccccEEEcccccccccccccccccccEEEcccccccccHHHHHHHccccccEEEccccccccccHHHHHcccccccEEEcccccccHHcHHHHHccccccEEEccccccccHHHHHcccHHHHHcHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccHHHHHHHHHHcccEEEEcccccccccccccccccccccccHHHHHHHccccccccccHHHHHHccccHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccEEEccccccccccccccccHHHHHHHHcccccccHHHHHHHHcccccEEEEccccccccHHHHHHHHHccEEccccccccHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHHHHcccEEEcccccccHHHHHHHHccccccEEEcccccccHHHEEccccccccccHHHHHHcccccEEEcccccccHHHHHHHHHHHHccEEEcccccccHHHHHHHHccHcccEEccccccccHHHHHHccccccccEEEcccccEccHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccHHHHHcccccccccccHHHHHccccHHHHHHHHcccccccccccccHHHccccc
Coil and Loop (DISEMBL)
mfprlsflnlawtgvtklpnissleclnlsnctidsilegnenkaplakISLAGTTFINEREAFLYIETSLLSFldvsnsslsrFCFLTQMKALEhldlsssmigddSVEMVACVGANlrnlnlsntrfssagvgilaghlpnleilslsgtqiDDYAISYMsmmpslkfidisnTDIKGFIQQVGAETDLVLSLTALQNLNHLERLnleqtqvsdatlfplstFKELIHLSLrnasltdvslhqlsslskltnlsirdavltnsglgsfkpprslklldlhggwllTEDAILQFCKMHPRIEVWHELSvicpsdqigsngpspsrtSLRASLVkqkqdpmpmshsfLDQRLKYSREELLELQYSSlslarpddsstqdamglr
Flexible Loop (DISEMBL)
mfprlsflNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTnsglgsfkppRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLvkqkqdpmpmsHSFLDQRLKYSREELLELQysslslarpddsstqdamglr
Low Complexity Region (SEG)
MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSlklldlhggwllTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSReellelqysslslARPDDSSTQDAMGLR
Disordered region (IsUnstruct)
****LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP***********************************************************************
Disordered Region (DISOPRED)
MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVI**********************************SFLDQRLKYSREELLELQY*************QDAMGL*
Disordered Region (DISEMBL)
MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ*************************PMSHSFLDQRLKYSREELLELQYSSLSL***************
Disordered Region (DISPRO)
MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP*******************************HSFLDQRLKYSREELLELQYS*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSSTQDAMGLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q723X5	1775	Internalin-I OS=Listeria	yes	no	0.619	0.134	0.256	5e-06
Q8YA32	1778	Internalin-I OS=Listeria	yes	no	0.614	0.132	0.267	6e-05
Q9DGB6	781	Toll-like receptor 2 type	yes	no	0.236	0.116	0.387	0.0001
O01615	225	Acidic leucine-rich nucle	yes	no	0.236	0.404	0.349	0.0002
P0DJM0	800	Internalin-A OS=Listeria	no	no	0.604	0.29	0.284	0.0002
Q723K6	800	Internalin-A OS=Listeria	no	no	0.575	0.276	0.313	0.0002
G2K3G6	800	Internalin-A OS=Listeria	no	no	0.403	0.193	0.322	0.0003
Q6R5N8	991	Toll-like receptor 13 OS=	yes	no	0.726	0.281	0.25	0.0009

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 35/273 (12%)

Query: 2   FPRLSFLNLA---WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
            P L +LN++    + V+ L N  SL  +N+SN  I ++  G   + P  K   A     
Sbjct: 474 LPLLEWLNVSSNRLSDVSTLTNFPSLNYINVSNNVIRTV--GKMTELPSLKEFYAQNN-- 529

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV--------- 109
           N  +  +  +   L  +D SN+ ++       +  L++LD+ S+ I + SV         
Sbjct: 530 NVSDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQNLDVHSNRITNTSVIHDLPSLET 589

Query: 110 -----EMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 162
                 ++  +G   NL  L   +  F+        G LP LEIL ++       ++  M
Sbjct: 590 FYAQNNLITNIGTMDNLPELTYVDLSFNRIPSLAPIGDLPKLEILKVTDNYSYLRSLGTM 649

Query: 163 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL-EQTQVSDATLFP 221
             +  L+ +++ N     ++   G E +L    +AL +L +L  LNL +   +SD +   
Sbjct: 650 DGVSKLRNLELQNN----YLNYTGTEGNL----SALSDLTNLTELNLRDNGYISDIS--G 699

Query: 222 LSTFKELIHLSLRNASLTDVS-LHQLSSLSKLT 253
           LST   LI+L+L +  + D+S L  L++L +LT
Sbjct: 700 LSTLSRLIYLNLDSNKIKDISALSNLTTLQELT 732

Unknown. A role in virulence could not be demonstrated.
Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 37/273 (13%)

Query: 2   FPRLSFLNLA---WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
            P L +LN++    + V+ L N  SL  +N+SN  I ++  G   + P  K   A    I
Sbjct: 477 LPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTV--GKMTELPSLKEFYAQNNSI 534

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV--------- 109
           ++    +  +   L  +D SN+ ++       +  L+ LD+ S+ I   SV         
Sbjct: 535 SDIS--MIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTSVIHDLPSLET 592

Query: 110 -----EMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 162
                 ++  +G   NL +L   N  F+        G LPNLE L +S       ++  M
Sbjct: 593 FNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDNNSYLRSLGTM 652

Query: 163 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 222
             +P L+ +D+ N     ++   G E +    L++L +L +L  LNL      D  +  L
Sbjct: 653 DGVPKLRILDLQN----NYLNYTGTEGN----LSSLSDLTNLTELNLRNNVYID-DISGL 703

Query: 223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
           ST   LI+L+L +  + D+     S+LS LTNL
Sbjct: 704 STLSRLIYLNLDSNKIEDI-----SALSNLTNL 731

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q9DGB6|TLR22_CHICK Toll-like receptor 2 type-2 OS=Gallus gallus GN=TLR2-2 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 7/98 (7%)

Query: 86  CFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNLSNTRFSSAGV-GILAGHL 141
           C L+Q + +LE+LDLS++++GD S+E  AC GA  +L+ LNLS    S   + G    HL
Sbjct: 350 CKLSQHLLSLEYLDLSANLLGDQSLEHSACQGAWPSLQTLNLSQNSLSDLKMTGKSLFHL 409

Query: 142 PNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDI 178
            NL +L +S     +  I  M   P +LK++++S+T I
Sbjct: 410 RNLNLLDISENNFGE--IPDMCEWPENLKYLNLSSTQI 445

Participates in the innate immune response to microbial agents. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Mediates the response to mycoplasmal macrophage-activating lipopeptide-2kD (MALP-2).

Gallus gallus (taxid: 9031)

>sp|O01615|AN322_CAEEL Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Caenorhabditis elegans GN=T19H12.2 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 12/103 (11%)

Query: 86  CFLTQMK------ALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILA 138
           C LT +K      AL +LDLS + +GDD S +++      ++ + LS  R +   V  L 
Sbjct: 48  CGLTTLKGMPVLPALNYLDLSDNELGDDASFDVLIKCAPEIKKITLSGNRLTLDNVRTLK 107

Query: 139 GHLPNLEILSLSGTQ----IDDYAISYMSMMPSLKFIDISNTD 177
             LPNL  L LS       +DDY +    M+PSLK +D  + D
Sbjct: 108 -MLPNLMELDLSNNSSLGLLDDYRVKMFEMIPSLKILDGCDVD 149

Caenorhabditis elegans (taxid: 6239)

>sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 53/285 (18%)

Query: 4   RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
           +++F N   T +T L N++ L  + ++N  I  I        PLA ++ L G T  N + 
Sbjct: 102 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 154

Query: 63  AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
             +           +E S  +  D+S     +SL +  F         L  +  LE LD+
Sbjct: 155 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 214

Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
           SS+ + D SV  +A +  NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  
Sbjct: 215 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 265

Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
           I  ++ + +L  +D++N  I       G    T+L L      +++ L  L  L  L L 
Sbjct: 266 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 325

Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
           + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL  L
Sbjct: 326 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL 366

Mediates the entry of L.monocytogenes into cells.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 129/252 (51%), Gaps = 31/252 (12%)

Query: 15  VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL--L 72
           +T L N+S+L  L L N  I  I +  +N   L ++ L+  T I++  A   + TSL  L
Sbjct: 135 ITPLANLSNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGL-TSLQQL 191

Query: 73  SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS- 131
           SF     + ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  +N + S  
Sbjct: 192 SF----GNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDI 244

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--T 189
             +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G    T
Sbjct: 245 TPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 298

Query: 190 DLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 243
           +L L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   +++D+S 
Sbjct: 299 ELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS- 355

Query: 244 HQLSSLSKLTNL 255
             +SSL+KL  L
Sbjct: 356 -PVSSLTKLQRL 366

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 22/177 (12%)

Query: 88  LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEI 146
           L  +  LE LD+SS+ + D SV  +A +  NL +L  +N + S    +GIL     NL+ 
Sbjct: 203 LANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDE 255

Query: 147 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTAL 198
           LSL+G Q+ D  I  ++ + +L  +D++N  I       G    T+L L      +++ L
Sbjct: 256 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 313

Query: 199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
             L  L  L L + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL  L
Sbjct: 314 AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL 366

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|Q6R5N8|TLR13_MOUSE Toll-like receptor 13 OS=Mus musculus GN=Tlr13 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 138/320 (43%), Gaps = 41/320 (12%)

Query: 4   RLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 59
           +L +L+L+   ++     L  +  L CL   + T +SI+  +   +P + +SL   +F  
Sbjct: 199 KLKYLSLSRNNISDFSGILEAVQHLPCLERLDLTNNSIMYLDH--SPRSLVSLTHLSF-- 254

Query: 60  EREAFLYIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMV 112
           E      +  S LS  +++N S SR         +L  +  L+ L+LS ++I  +++   
Sbjct: 255 EGNKLRELNFSALSLPNLTNLSASRNGNKVIQNVYLKTLPQLKSLNLSGTVIKLENLS-- 312

Query: 113 ACVGANLRNLNLSNTRFSSAGVGI-----LAGHLPNLEILSLSGTQIDDYAISYMSMMPS 167
           A    NLR ++LSN       + +     L G+LP LE L       +   I  ++    
Sbjct: 313 AKHLQNLRAMDLSNWELRHGHLDMKTVCHLLGNLPKLETLVFQKNVTNAEGIKQLAKCTR 372

Query: 168 LKFIDISNTDIKGFIQQVGAETDLV-LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 226
           L F+D+            G  +DL+ L+ +    L  L++LNL + Q+S       S+ +
Sbjct: 373 LLFLDL------------GQNSDLIYLNDSEFNALPSLQKLNLNKCQLSFINNRTWSSLQ 420

Query: 227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286
            L  L L +           S L  L  LS+    +T     +F    +LK L+L   W+
Sbjct: 421 NLTSLDLSHNKFKSFPDFAFSPLKHLEFLSLSRNPITELNNLAFSGLFALKELNLAACWI 480

Query: 287 LTED--AILQFCKMHPRIEV 304
           +T D  +  QF    P +EV
Sbjct: 481 VTIDRYSFTQF----PNLEV 496

Key component of innate and adaptive immunity. TLRs (Toll-like receptors) control host immune response against pathogens through recognition of molecular patterns specific to microorganisms. Acts via MYD88 and TRAF6, leading to NF-kappa-B. activation, cytokine secretion and the inflammatory response.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
356513289	589	PREDICTED: uncharacterized protein LOC10	0.966	0.629	0.633	1e-128
297742329	588	unnamed protein product [Vitis vinifera]	0.942	0.615	0.6	1e-116
225426352	598	PREDICTED: uncharacterized protein LOC10	0.942	0.605	0.587	1e-114
255537779	597	protein binding protein, putative [Ricin	0.953	0.613	0.610	1e-113
449464060	586	PREDICTED: uncharacterized protein LOC10	0.984	0.645	0.536	1e-99
186701224	600	leucine-rich repeat family protein [Arab	0.971	0.621	0.489	3e-84
224058283	291	predicted protein [Populus trichocarpa]	0.734	0.969	0.600	6e-84
297803756	590	hypothetical protein ARALYDRAFT_492485 [	0.945	0.615	0.476	8e-79
42567079	597	leucine-rich repeat-containing protein [	0.966	0.621	0.461	7e-78
357134265	547	PREDICTED: uncharacterized protein LOC10	0.942	0.661	0.463	1e-76

>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/374 (63%), Positives = 297/374 (79%), Gaps = 3/374 (0%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
           FP+L++LNLAWT VTKLP +S LE LN+SNCTIDSILE  ++KAPLAK+ L+G  F+NE 
Sbjct: 209 FPKLTYLNLAWTSVTKLPKLSFLEYLNMSNCTIDSILE--DDKAPLAKLILSGAMFMNEA 266

Query: 62  EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121
           EA LY  T+ LSFLDV+NSS  RF FL++MK +EHL+LSS M+GDDSVEMVAC G NL++
Sbjct: 267 EALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMGDDSVEMVACAGGNLKS 326

Query: 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181
           LNLS TR SSAG+GILAGH+P+LEILSLS T +DD AIS++SMMPSLK +D+SNT+IKGF
Sbjct: 327 LNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNIKGF 386

Query: 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241
           + Q   + + +LSL ALQNL  LERLNLE TQV D  L+PLS+F+EL +LSL++ASL D+
Sbjct: 387 LHQGRTDVNSLLSLMALQNLK-LERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLADI 445

Query: 242 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 301
           SL+ LSS+ KLTNLSI DAVLTN GL  FK P +LKLLDL G WLLTED IL FC+ HP+
Sbjct: 446 SLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCWLLTEDTILSFCRNHPQ 505

Query: 302 IEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLE 361
           +EV HEL  + P +Q G N  SPSR++ +   + +K+D +P+S  F+DQRLKYSR+ELL 
Sbjct: 506 VEVRHELGTLFPVNQNGLNHSSPSRSTSKTMQMTKKKDQIPLSPYFVDQRLKYSRDELLA 565

Query: 362 LQYSSLSLARPDDS 375
           LQ++SL LA   +S
Sbjct: 566 LQFTSLPLASSSES 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/380 (60%), Positives = 285/380 (75%), Gaps = 18/380 (4%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 60
           +FP+LSFLN+AWT VT LP++ S+ CLN+SNCTI S+ EG   KA L KI+++G TF+N 
Sbjct: 213 VFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFLNV 272

Query: 61  REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120
            EAFL+IETS LSFLDVS SSL+ FCFL+ MKALEHLDLS +M+GDDS++++AC+GANLR
Sbjct: 273 SEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEHLDLSFTMMGDDSIQLIACIGANLR 332

Query: 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 180
           NLNLSNTR SSAGV ILAG +PNLE +SLS T +DD AISY+SMM S+K I++SNT++KG
Sbjct: 333 NLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNTNVKG 392

Query: 181 FIQQVGAETDLV--LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
            I    ++++LV  LSL AL +LN+++RL+LE TQV D  L PL  F++L  LSL+   L
Sbjct: 393 LIW---SDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTRL 449

Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 298
           TD+SL+QLSSL  L NLSI D VLTN GL SFKPP +LKLLDL G WLLTEDAIL F K 
Sbjct: 450 TDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTEDAILSFHKN 509

Query: 299 HPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHS------FLDQRL 352
            P+IEV HEL  I PS+Q  SN  SPS+         +KQ  +P S S       +DQR 
Sbjct: 510 DPQIEVRHELVHITPSEQNASNRSSPSQKG-------KKQQKLPKSQSRSKEETVIDQRW 562

Query: 353 KYSREELLELQYSSLSLARP 372
           KYSREELL +++S+L+L  P
Sbjct: 563 KYSREELLAMEHSTLALNFP 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/390 (58%), Positives = 286/390 (73%), Gaps = 28/390 (7%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 60
           +FP+LSFLN+AWT VT LP++ S+ CLN+SNCTI S+ EG   KA L KI+++G TF+N 
Sbjct: 213 VFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFLNV 272

Query: 61  REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120
            EAFL+IETS LSFLDVS SSL+ FCFL+ MKALEHLDLS +M+GDDS++++AC+GANLR
Sbjct: 273 SEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEHLDLSFTMMGDDSIQLIACIGANLR 332

Query: 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 180
           NLNLSNTR SSAGV ILAG +PNLE +SLS T +DD AISY+SMM S+K I++SNT++KG
Sbjct: 333 NLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNTNVKG 392

Query: 181 FIQQVGAETDLV--LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
            I    ++++LV  LSL AL +LN+++RL+LE TQV D  L PL  F++L  LSL+   L
Sbjct: 393 LIW---SDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTRL 449

Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 298
           TD+SL+QLSSL  L NLSI D VLTN GL SFKPP +LKLLDL G WLLTEDAIL F K 
Sbjct: 450 TDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTEDAILSFHKN 509

Query: 299 HPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHS------------ 346
            P+IEV HEL  I PS+Q  SN  SPS+         +KQ  +P S S            
Sbjct: 510 DPQIEVRHELVHITPSEQNASNRSSPSQKG-------KKQQKLPKSQSRSKEETVIGMEF 562

Query: 347 -FLD---QRLKYSREELLELQYSSLSLARP 372
            FL+   QR KYSREELL +++S+L+L  P
Sbjct: 563 PFLESSYQRWKYSREELLAMEHSTLALNFP 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis] gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/372 (61%), Positives = 279/372 (75%), Gaps = 6/372 (1%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNEN--KAPLAKISLAGTTFI 58
           +FP+LSFLNL WT VT+LP++ SLE LNLSNCTI+S+LEG+ +  KAPL K+ L+G TF 
Sbjct: 208 LFPKLSFLNLGWTSVTRLPSMLSLEYLNLSNCTIESLLEGDGDGDKAPLTKVILSGATFP 267

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
           NE EAF  IE   LSFLDVSNSSL  F FL  MK LEHLDLSS+M+GDD++E VAC+GAN
Sbjct: 268 NEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLSSTMMGDDAIEAVACIGAN 327

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
           L NLNLS TR +SAG+ ILA H+P LE LSLS   +DD+A+SY+ MM SLK +D+SNT+I
Sbjct: 328 LTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALSYIGMMSSLKVVDLSNTNI 387

Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
           KGFI+Q+G ET+L+ SL ALQ L+ L+ LNLE TQV DA + P+S+F+EL HLSL++ASL
Sbjct: 388 KGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVAPVSSFQELSHLSLKSASL 447

Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 298
            D +L+ LSSLSKLT+L I DAVLTN GL  F+PP +LK+LDL G WLLTE+AI  FC  
Sbjct: 448 ADETLYHLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLDLRGCWLLTEEAISSFCTK 507

Query: 299 HPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPM----PMSHSFLDQRLKY 354
           HP I++ HEL  +   ++  S   SPSR   R   V +KQ  M    PM   F+DQRLKY
Sbjct: 508 HPAIKLRHELLNVSSPNESSSYRASPSRILSRPPHVSRKQGKMPVSWPMPQHFIDQRLKY 567

Query: 355 SREELLELQYSS 366
           SREELL LQY S
Sbjct: 568 SREELLALQYQS 579

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus] gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/384 (53%), Positives = 255/384 (66%), Gaps = 6/384 (1%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 60
           MFP+LSFLN+AWT VTK PN+  LECLN+SNC IDS L+G   K P  K+  +G TF NE
Sbjct: 206 MFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDSTLKGLGAKVPPRKLIASGATFSNE 265

Query: 61  REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120
            E   ++    L +LD SN+SL RFCFL++MKA+EHLDLSS+ IGD SVE++A VG NL+
Sbjct: 266 TEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLSSTTIGDSSVELIASVGENLK 325

Query: 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 180
            LNLS T  SS+G+G LAG + NLE LSLS T +DD A+SYM+MMPSLK ID+S TDIKG
Sbjct: 326 YLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALSYMNMMPSLKCIDLSETDIKG 385

Query: 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240
           +I     ET  V SLT LQNL+ LE LNLE T V D +L PLS F++L HL LR+ S TD
Sbjct: 386 YIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRSPSFTD 445

Query: 241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 300
             L  LS L  L  LSIRDAVLTN    +FKP  +L+ +DL G WLLTED +  F +  P
Sbjct: 446 TVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATLQKIDLRGCWLLTEDGLSVFHRRFP 505

Query: 301 RIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELL 360
           +I+V HEL     S+   ++ PS      +  L  Q      M   F+DQRLKYS+EELL
Sbjct: 506 QIDVRHELFHF-SSNPTSTDQPSTHFIPKKIQL-NQTSRSTGMPSYFVDQRLKYSKEELL 563

Query: 361 ELQYSSLSLARPDDSSTQDAMGLR 384
            LQ+SSL    P  S++   MG +
Sbjct: 564 ALQFSSL----PHGSTSVPEMGRK 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 186/380 (48%), Positives = 241/380 (63%), Gaps = 7/380 (1%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
           F  LSFLNL+WT VT+ PNI  LECL+++ CTI S  + + + A L K+ L+G  F  E 
Sbjct: 207 FSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVSEPKTHSSLASLKKLVLSGANFSAET 266

Query: 62  EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121
           EA  +   S +++LDVS +SL  F FL  M  LEHLDLSS+  GDDSV  VACVG NLRN
Sbjct: 267 EALSFTNKSSITYLDVSKTSLQNFSFLETMINLEHLDLSSTAFGDDSVGFVACVGENLRN 326

Query: 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKG 180
           LN+S T+ +SAGVG LAGH+P LE  SLS T +DD +I  +S MMP +K +D+  T I+G
Sbjct: 327 LNVSETKITSAGVGNLAGHVPQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIRG 386

Query: 181 FI-QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239
           FI QQ   E     SL ALQ+L  L+ L+LE   + D  L  LS+   L HLSLR+ SLT
Sbjct: 387 FILQQSPQEEQAEPSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSLRSTSLT 446

Query: 240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 299
           D +LH LSSL  L +L +RDAVLT++GL  F+PP+ L+ LDL G WLLT+D I   CK +
Sbjct: 447 DSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKRY 506

Query: 300 PRIEVWHE--LSVICPSDQIGSNGPSPSRTSLRASLVKQKQDP---MPMSHSFLDQRLKY 354
           P I+V HE  +S     +Q+     +P   S      +  Q P   + +  SFLDQR+KY
Sbjct: 507 PHIKVRHEHDISSSLDQNQLLPRSSTPQTQSFGKLPRRNNQRPESYVAVPRSFLDQRVKY 566

Query: 355 SREELLELQYSSLSLARPDD 374
           +REEL+ LQ S LS   P +
Sbjct: 567 NREELVALQKSPLSQLLPRE 586

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058283|ref|XP_002299476.1| predicted protein [Populus trichocarpa] gi|222846734|gb|EEE84281.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (812), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 170/283 (60%), Positives = 208/283 (73%), Gaps = 1/283 (0%)

Query: 94  LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 153
           +E+LDLSSSMIGDDS+E VA +GA LRNLNL  TR +SAGV IL GH+P LE LSLS T 
Sbjct: 1   MEYLDLSSSMIGDDSIEAVASIGAILRNLNLGKTRVTSAGVAILVGHVPKLENLSLSHTL 60

Query: 154 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 213
           +DD A+SY+ MMPSLK +D++NT I GFI Q GA  +L+ SLTAL +L  LE LNLE   
Sbjct: 61  VDDLAMSYIGMMPSLKLVDLNNTIINGFIHQDGAGPNLISSLTALHSLKGLESLNLECAN 120

Query: 214 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 273
           + DA + PLS F+EL  LSL++ SLTD+SL+ LSSL K+ NL IRDAVLT+SGL SF+PP
Sbjct: 121 IKDAAVDPLSNFQELRLLSLKSPSLTDISLYHLSSLPKIRNLGIRDAVLTDSGLFSFRPP 180

Query: 274 RSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 333
            +L++LDL G WLLTEDAIL F K HP IE+ HE  V+  SDQ   +  +P RT LR   
Sbjct: 181 ATLEMLDLRGCWLLTEDAILSFRKRHPLIELRHE-HVVSTSDQTARHRLTPPRTFLRPPQ 239

Query: 334 VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDDSS 376
           V QKQ+ + +S  F+DQRLKY+REELL LQ+ S SL  P D S
Sbjct: 240 VNQKQEKLIVSQYFIDQRLKYTREELLALQFQSSSLGSPFDKS 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp. lyrata] gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp. lyrata]

 Score =  300 bits (768), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 179/376 (47%), Positives = 235/376 (62%), Gaps = 13/376 (3%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
           F  LSFLNL+WT VT+ PNI  LECL+++ CTI S  + + + A L K+ L+G  F  E 
Sbjct: 207 FSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVSEPKTHCSLASLKKLVLSGANFSAET 266

Query: 62  EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121
           EA  +   S +++LDVS +SL  F F+  M  LEHLDLSS+  GDDSV  VACVG NL+N
Sbjct: 267 EALSFTNKSSITYLDVSKTSLQNFSFIETMINLEHLDLSSTAFGDDSVGFVACVGENLKN 326

Query: 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKG 180
           LN+S+T+ +SAGVG LAGH+P LE  SLS T +DD +I  +S MMP +K +D+  T I+ 
Sbjct: 327 LNVSDTKITSAGVGNLAGHVPQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIR- 385

Query: 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240
                  E     SL ALQ+L  L+ L+LE   + D  L  LS+   L HLSLR+ SLTD
Sbjct: 386 -------EEQAEPSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSLRSTSLTD 438

Query: 241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 300
            +LH LSSL  L +L +RDAVLT++GL  F+PP+ L+ LDL G WLLT+D I   CK +P
Sbjct: 439 STLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKRYP 498

Query: 301 RIEVWHELSVICPSDQ----IGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSR 356
            I+V HE       DQ      S+ P       R S  ++ +  + +  SFLDQR+KY+R
Sbjct: 499 HIKVRHEHDDSSSLDQNQFLPRSSTPQSFGKVPRRSNNQRPESSVAVPRSFLDQRVKYNR 558

Query: 357 EELLELQYSSLSLARP 372
           EEL+ LQ S LS   P
Sbjct: 559 EELVALQNSPLSQLLP 574

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana] gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana] gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana] gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 173/375 (46%), Positives = 231/375 (61%), Gaps = 4/375 (1%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
           F  LSFLNL+WT +T+ PNI  LECL+++ CTI S  + + + A L K+ L+G  F  E 
Sbjct: 207 FSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKTHSSLASLKKLVLSGANFSAET 266

Query: 62  EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121
           E+  +   S +++LDVS +SL  F FL  M  LEHLDLSS+  GDDSV  VACVG NL+N
Sbjct: 267 ESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDSVGFVACVGENLKN 326

Query: 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKG 180
           LN+S+T+ + +GVG LAGH+P LE LS+S T +DD +I  +S  MP +K +D+      G
Sbjct: 327 LNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLISTTMPCIKALDLGMNSTLG 386

Query: 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240
           F   +  + +   SL ALQ+L  LE L+LE   + D  L  LS+   L HLSL + SLTD
Sbjct: 387 FYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLTSTSLTD 446

Query: 241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 300
            +LH LSSL  L +L +RD VLT++GL  F+PP  L+ LDL G WLLT+D I   CK +P
Sbjct: 447 STLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLCKRYP 506

Query: 301 RIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDP---MPMSHSFLDQRLKYSRE 357
            I+V HE +     DQ      S +  S      +  Q P   + +  SFLDQR+KY+RE
Sbjct: 507 HIKVRHEHADSSSLDQNQLLPRSSTPQSFGKVARRNNQRPESSVAVPRSFLDQRVKYNRE 566

Query: 358 ELLELQYSSLSLARP 372
           EL+ LQ S LS   P
Sbjct: 567 ELVALQNSPLSQLLP 581

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium distachyon]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 170/367 (46%), Positives = 241/367 (65%), Gaps = 5/367 (1%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINE 60
           F RLSFLN++WT VT+LP + +L+ LN+SNCTI SI +G+ E   PL K ++   +F N 
Sbjct: 161 FTRLSFLNVSWTHVTRLPPLPNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTVCAASFGNI 220

Query: 61  REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120
            E F  I+ S L +LD+S  SLS      +MK +EHLDLS S I D +++ VA +G NLR
Sbjct: 221 FEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLR 280

Query: 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 180
           +L+L NT  +S    ILAG +PNL  LSL+ T+IDD A++Y+SMMPSL+ ID+S+T IKG
Sbjct: 281 HLSLKNTGITSQAPCILAGTVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSHTSIKG 340

Query: 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240
           F   V   ++ + S+  L++L +LE LNLE T +SD  + PL++F+ + +L L++  L+D
Sbjct: 341 F-TCVEVNSEKIPSMPPLEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDFLSD 399

Query: 241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 300
            +LH LSS S LT+L     +L++SGL  F PP  L++LDL G W+LT DA+  FCK HP
Sbjct: 400 PALHALSSASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSGCWILTGDAVSTFCKHHP 459

Query: 301 RIEVWHELSVICPSDQIGSNGPSPSRTSLRAS--LVKQKQDPMPMSH-SFLDQRLKYSRE 357
            IEV HEL      +  G++    SR   +A    V ++  P  +S   F+D+R+KYSRE
Sbjct: 460 VIEVTHELWQELQPNSGGTSQVHKSRQLPKAKTEAVNRQAGPSRLSGIFFVDERIKYSRE 519

Query: 358 ELLELQY 364
           EL+ELQ+
Sbjct: 520 ELMELQH 526

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.916	0.589	0.436	5.6e-68
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.664	0.435	0.272	4.2e-12
UNIPROTKB|Q723K6	800	inlA "Internalin-A" [Listeria	0.580	0.278	0.316	2.5e-11
UNIPROTKB|F1P5J3	733	TLR2-2 "Toll-like receptor" [G	0.653	0.342	0.276	6.4e-09
UNIPROTKB|Q9DGB6	781	TLR2-2 "Toll-like receptor 2 t	0.640	0.314	0.270	4.2e-08
TIGR_CMR|BA_1346	542	BA_1346 "internalin, putative"	0.604	0.428	0.273	6.8e-08
UNIPROTKB|F1NUH0	728	TLR2-2 "Toll-like receptor 2 t	0.591	0.311	0.278	1.1e-07
FB|FBgn0034540	808	Lrt "Leucine-rich tendon-speci	0.580	0.275	0.280	1.2e-07
UNIPROTKB|Q724E1	499	inlE "Internalin E" [Listeria	0.393	0.302	0.295	6e-07
UNIPROTKB|Q5LMY8	556	SPO3424 "Leucine rich repeat p	0.414	0.285	0.309	1.5e-06

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 158/362 (43%), Positives = 214/362 (59%)

Query:     2 FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
             F  LSFLNL+WT +T+ PNI  LECL+++ CTI S  + + + A L K+ L+G  F  E 
Sbjct:   207 FSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKTHSSLASLKKLVLSGANFSAET 266

Query:    62 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121
             E+  +   S +++LDVS +SL  F FL  M  LEHLDLSS+  GDDSV  VACVG NL+N
Sbjct:   267 ESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDSVGFVACVGENLKN 326

Query:   122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTDIKG 180
             LN+S+T+ + +GVG LAGH+P LE LS+S T +DD +I  +S  MP +K +D+      G
Sbjct:   327 LNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLISTTMPCIKALDLGMNSTLG 386

Query:   181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240
             F   +  + +   SL ALQ+L  LE L+LE   + D  L  LS+   L HLSL + SLTD
Sbjct:   387 FYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLTSTSLTD 446

Query:   241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSXXXXXXXXXXXXTEDAILQFCKMHP 300
              +LH LSSL  L +L +RD VLT++GL  F+PP              T+D I   CK +P
Sbjct:   447 STLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLCKRYP 506

Query:   301 RIEVWHELSVICPSDQIGSNGPSP-SRTSLRASLVKQKQDPMPMS-----HSFLDQRLKY 354
              I+V HE +    S  +  N   P S T      V ++ +  P S      SFLDQR+KY
Sbjct:   507 HIKVRHEHA---DSSSLDQNQLLPRSSTPQSFGKVARRNNQRPESSVAVPRSFLDQRVKY 563

Query:   355 SR 356
             +R
Sbjct:   564 NR 565

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 75/275 (27%), Positives = 128/275 (46%)

Query:    14 GVTKLPNISSLECLNLS--NCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 71
             G+  L  ++ LE LN+   NC  D+ +E       L  + +  +   +   ++L    + 
Sbjct:   228 GLVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQICCSKITDIGISYLK-GLNK 286

Query:    72 LSFLDVSNSS-LSRFCF--LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR 128
             L+ L++     ++  C   LT +  L +L+L+     D   E  + +  NL+ LNL    
Sbjct:   287 LNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSDL-INLKILNLGMNN 345

Query:   129 FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI--KGFIQQVG 186
              +++ +  L G L  LE L+L   +I D  + ++S M  LK +++S+T++   G     G
Sbjct:   346 ITNSCLVHLKG-LTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSG 404

Query:   187 AET--DLVLSLTA--------LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
                   + LS T         L  L  L  LNL+   V+DA L  L++   L HL L  A
Sbjct:   405 LSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGA 464

Query:   237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 271
              +TD   + L +L KL +L I    LT++G+ + K
Sbjct:   465 RITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIK 499

GO:0005886 "plasma membrane" evidence=ISM

UNIPROTKB|Q723K6 inlA "Internalin-A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 186 (70.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 79/250 (31%), Positives = 128/250 (51%)

Query:    15 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
             +T L N+S+L  L L N  I  I +  +N   L ++ L+  T I++  A   + TSL   
Sbjct:   135 ITPLANLSNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGL-TSLQQ- 190

Query:    75 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
             L   N  ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  +N + S    
Sbjct:   191 LSFGNQ-VTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 246

Query:   134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
             +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G    T+L
Sbjct:   247 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 300

Query:   192 VLSLTALQNLNHLERL----NLE--QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
              L    + N++ L  L    NLE  + Q+ D +  P+S  K L +L+L   +++D+S   
Sbjct:   301 KLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--P 356

Query:   246 LSSLSKLTNL 255
             +SSL+KL  L
Sbjct:   357 VSSLTKLQRL 366

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

UNIPROTKB|F1P5J3 TLR2-2 "Toll-like receptor" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 76/275 (27%), Positives = 134/275 (48%)

Query:    14 GVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET--SL 71
             G+ KL  +   +C  L        +  N++++ L  +++   + I E   F  +++   L
Sbjct:   274 GMPKLMEVEMKDCTLLGTGKWYKQIHANQSQS-LRILTIENLS-IEEFYLFTDLQSVLDL 331

Query:    72 LS-FLDVSNSSLSRF---CFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNL 124
             LS F  V+  +   F   C L+Q + +LE+LDLS++++GD S+E  AC GA  +L+ LNL
Sbjct:   332 LSLFRKVTVENTKVFLVPCKLSQHLLSLEYLDLSANLLGDQSLEHSACQGAWPSLQTLNL 391

Query:   125 SNTRFSSAGV-GILAGHLPNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDIKGFI 182
             S    S   + G    HL NL +L +S     +  I  M   P +LK++++S+T I    
Sbjct:   392 SQNSLSDLKMTGKSLFHLRNLNLLDISENNFGE--IPDMCEWPENLKYLNLSSTQIPKLT 449

Query:   183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTD 240
               + +  + VL ++A    N+L+   L+   + +  L    L T  E   +   N     
Sbjct:   450 TCIPSTLE-VLDVSA----NNLQDFGLQLPFLKELYLTKNHLKTLPEATDIP--NLVAMS 502

Query:   241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 275
             +S ++L+S SK   L++R A + +  L   +  RS
Sbjct:   503 ISRNKLNSFSKEEPLTVRGAQVGSVQLSLMECHRS 537

GO:0002237 "response to molecule of bacterial origin" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=IEA

GO:0050707 "regulation of cytokine secretion" evidence=IEA

GO:0050729 "positive regulation of inflammatory response" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

UNIPROTKB|Q9DGB6 TLR2-2 "Toll-like receptor 2 type-2" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 73/270 (27%), Positives = 130/270 (48%)

Query:    14 GVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET--SL 71
             G+ KL  +   +C  L        +  N++++ L  +++   + I E   F  +++   L
Sbjct:   274 GMPKLMEVEMKDCTLLGTGKWYKQIHANQSQS-LRILTIENLS-IEEFYLFTDLQSVLDL 331

Query:    72 LS-FLDVSNSSLSRF---CFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNL 124
             LS F  V+  +   F   C L+Q + +LE+LDLS++++GD S+E  AC GA  +L+ LNL
Sbjct:   332 LSLFRKVTVENTKVFLVPCKLSQHLLSLEYLDLSANLLGDQSLEHSACQGAWPSLQTLNL 391

Query:   125 SNTRFSSAGV-GILAGHLPNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDIKGFI 182
             S    S   + G    HL NL +L +S     +  I  M   P +LK++++S+T I    
Sbjct:   392 SQNSLSDLKMTGKSLFHLRNLNLLDISENNFGE--IPDMCEWPENLKYLNLSSTQIPKLT 449

Query:   183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTD 240
               + +  + VL ++A    N+L+   L+   + +  L    L T  E   +   N     
Sbjct:   450 TCIPSTLE-VLDVSA----NNLQDFGLQLPFLKELYLTKNHLKTLPEATDIP--NLVAMS 502

Query:   241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
             +S ++L+S SK    S +   L ++   +F
Sbjct:   503 ISRNKLNSFSKEEFESFKQMELLDASANNF 532

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=IEA

GO:0050707 "regulation of cytokine secretion" evidence=IEA

GO:0050729 "positive regulation of inflammatory response" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0002224 "toll-like receptor signaling pathway" evidence=NAS

GO:0042494 "detection of bacterial lipoprotein" evidence=NAS

TIGR_CMR|BA_1346 BA_1346 "internalin, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 153 (58.9 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 71/260 (27%), Positives = 125/260 (48%)

Query:     7 FLN----LAWTGVTKLPNISSLECLNLSNCTI-DSILEGNENKAPLAKISLAGTTFINER 61
             FLN    L ++ +  +PN+ SL    ++N  I D     N  +  L  ++L G  F    
Sbjct:     2 FLNTNEILDYSALKYMPNLKSL---TVANAKIKDPSFFANLKQ--LNHLALRGNEF---S 53

Query:    62 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121
             +    ++   L  LD+SN+ ++    L +MK ++ L LS + I D  V  +A +   L  
Sbjct:    54 DVTPLVKMDHLDSLDLSNNKITNVAPLIEMKNVKSLYLSGNQIED--VTALAKM-EQLDY 110

Query:   122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL-----KFIDISNT 176
             LNL+N + ++  V  L+  L N+  L+L+G QI+D    Y   +  L     K  D+S  
Sbjct:   111 LNLANNKITN--VAPLSA-LKNVTYLTLAGNQIEDIKPLYSLPLTDLVLTRNKVKDLSGI 167

Query:   177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
             +    ++++    + +  +T L  +  L++L+L   ++ D T  PLS+   L  L L   
Sbjct:   168 EQMKQLEELWIGKNEIKDVTPLSKMTQLKQLHLPNNELKDIT--PLSSLVNLQKLDLEAN 225

Query:   237 SLTDVSLHQLSSLSKLTNLS 256
              ++D++    S+L KL  LS
Sbjct:   226 YISDLT--PASNLKKLVFLS 243

GO:0005102 "receptor binding" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

UNIPROTKB|F1NUH0 TLR2-2 "Toll-like receptor 2 type-2" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 70/251 (27%), Positives = 123/251 (49%)

Query:    14 GVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET--SL 71
             G+ KL  +   +C  L        +  N++++ L  +++   + I E   F  +++   L
Sbjct:   274 GMPKLMEVEMKDCTLLGTGKWYKQIHANQSQS-LRILTIENLS-IEEFYLFTDLQSVLDL 331

Query:    72 LS-FLDVSNSSLSRF---CFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNL 124
             LS F  V+  +   F   C L+Q + +LE+LDLS++++GD S+E  AC GA  +L+ LNL
Sbjct:   332 LSLFRKVTVENTKVFLVPCKLSQHLLSLEYLDLSANLLGDQSLEHSACQGAWPSLQTLNL 391

Query:   125 SNTRFSSAGV-GILAGHLPNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDIKGFI 182
             S    S   + G    HL NL +L +S     +  I  M   P +LK++++S+T I    
Sbjct:   392 SQNSLSDLKMTGKSLFHLRNLNLLDISENNFGE--IPDMCEWPENLKYLNLSSTQIPKLT 449

Query:   183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTD 240
               + +  + VL ++A    N+L+   L+   + +  L    L T  E   +   N     
Sbjct:   450 TCIPSTLE-VLDVSA----NNLQDFGLQLPFLKELYLTKNHLKTLPEATDIP--NLVAMS 502

Query:   241 VSLHQLSSLSK 251
             +S ++L+S SK
Sbjct:   503 ISRNKLNSFSK 513

GO:0002237 "response to molecule of bacterial origin" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0050707 "regulation of cytokine secretion" evidence=IEA

GO:0050729 "positive regulation of inflammatory response" evidence=IEA

FB|FBgn0034540 Lrt "Leucine-rich tendon-specific protein" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 68/242 (28%), Positives = 111/242 (45%)

Query:    20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79
             +IS L+C +L N T  S  +  +N +    +  +G      + AFL I   L +     N
Sbjct:   153 SISLLDC-SLRNVTFLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALGLPGN 211

Query:    80 SSLS-RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGIL 137
             + +S  +  L+ + ALE LDL+++ I   ++     VG  +L  L LSN + SS      
Sbjct:   212 ALMSVPWNALSTLSALERLDLANNKI--KALGTADFVGLTSLVYLELSNNQISSISQRTF 269

Query:   138 AGHLPNLEILSLSGTQIDDYAISYMSMMP--SLKFIDISNTDIKGFIQQVGAETDLVLSL 195
               +L  LE+L L G ++ DYA S  S+    SL+ +D+   ++ G            LS 
Sbjct:   270 V-NLRKLEVLKLGGNRLGDYAQSLRSLSQCLSLRQLDLQANNLNG-----------PLSE 317

Query:   196 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
               L  + +LE LNL +  +       L+ F  L+ LSLR+  +  +  H    L  L +L
Sbjct:   318 QTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQIDVLQDHAFFGLGALDSL 377

Query:   256 SI 257
              +
Sbjct:   378 DL 379

GO:0016021 "integral to membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:2001282 "negative regulation of muscle cell chemotaxis toward tendon cell" evidence=IMP

GO:0005927 "muscle tendon junction" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:2001283 "Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell" evidence=IGI

UNIPROTKB|Q724E1 inlE "Internalin E" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 144 (55.7 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 50/169 (29%), Positives = 91/169 (53%)

Query:    99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158
             LS+   G  ++E +  +  NL  L L++ + +   V  LA +L  +  L LSG  + D  
Sbjct:    79 LSAKSAGITTIEGMQYL-TNLSELELTDNQITD--VSPLA-NLTKITELGLSGNPLKD-- 132

Query:   159 ISYMSMMPSLKFIDISNTDIK------GF--IQQVGAETDLVLSLTALQNLNHLERLNLE 210
             +S ++ + SLK + +  TDI       G   +Q++  + + +  ++ L  L++L+ L+L 
Sbjct:   133 VSALAGLKSLKMLHLIYTDITDVTSLAGLTNLQELNLDINQITDISPLAALSNLQTLSLG 192

Query:   211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
              TQVSD T  P++   +L  L+  N  ++D+S   L+SLS LT + +R+
Sbjct:   193 YTQVSDLT--PIANLSKLTILNAENCKVSDIS--PLASLSSLTEVYLRE 237

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

UNIPROTKB|Q5LMY8 SPO3424 "Leucine rich repeat protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 56/181 (30%), Positives = 95/181 (52%)

Query:    88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147
             + ++  L  LDL+++ + D  +  +A +   L  L+L++T+ S   +  LA  L  L +L
Sbjct:    43 IAELTELRDLDLNNTQVSD--IAPLAAL-TRLNALSLNDTQVSD--IAPLAA-LTRLTML 96

Query:   148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV-LSLT--------AL 198
             SL+ TQ+ D  I+ ++ +  L  + + NT +   I  + A T L  LSL         AL
Sbjct:    97 SLNNTQVSD--IAPLAALTRLTGLWLHNTQVSD-IAPLAALTRLTGLSLNKTQVSDIAAL 153

Query:   199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 258
               L  L  L+L  TQVSD  + PL++   L  LSL N   +D++   L++L++L  LS+ 
Sbjct:   154 AALTRLTTLSLNNTQVSD--IAPLASLTRLTTLSLENMQASDIA--PLAALTRLIMLSLN 209

Query:   259 D 259
             +
Sbjct:   210 N 210

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 92  KALEHLDLSSSMIGDDSVEMVACVGANLRNLNL-SNTRFSSAGVGILAGHLPNLEILSLS 150
             LE L+L    I D  ++ ++     L+ L L  +      G+  LA   PNL++L L 
Sbjct: 28  SGLEWLELYMCPISDPPLDQLSN-CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLR 86

Query: 151 G-TQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLERL 207
               I D  I  ++   P L+ I++        I      TD+  SL+AL +N   L+ +
Sbjct: 87  ACENITDSGIVALATNCPKLQTINLGRHRNGHLI------TDV--SLSALGKNCTFLQTV 138

Query: 208 NLEQTQVSDATLFPLSTF--KELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSI 257
                 V+D  ++ L++   K L  LSL N   LTD S+  + + +   NLS+
Sbjct: 139 GFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 34/250 (13%)

Query: 12  WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETS 70
           W G+T   N S +  ++LS   I   +     + P +  I+L+           ++  +S
Sbjct: 60  WQGIT-CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118

Query: 71  LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 130
            L +L++SN++ +       +  LE LDLS++M+   S E+   +G+       S+ +  
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML---SGEIPNDIGS------FSSLKVL 169

Query: 131 SAGVGILAGHLPN-------LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI- 182
             G  +L G +PN       LE L+L+  Q+       +  M SLK+I +   ++ G I 
Sbjct: 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Query: 183 QQVGAET-----DLVLS-LT-----ALQNLNHLERLNLEQTQVSDATLFPLSTF--KELI 229
            ++G  T     DLV + LT     +L NL +L+ L L Q ++S     P S F  ++LI
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLI 287

Query: 230 HLSLRNASLT 239
            L L + SL+
Sbjct: 288 SLDLSDNSLS 297

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 24/201 (11%)

Query: 66  YIETSLLSFLDVSNSSLS-----RFCFLTQMKALEHLDLSSSMIGDDSVEMVAC----VG 116
             +   L  LD+S+++L          L +  +L+ L L+++ +GD  + ++A     + 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 117 ANLRNLNLSNTRFSSAGVGILAG---HLPNLEILSLSGTQIDDYAISY----MSMMPSLK 169
             L  L L   R   A    LA       +L+ L+L+   I D  I      +    +L+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 170 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 229
            +D++N         +  E    L+ T     + LE LNL    ++DA    L++     
Sbjct: 197 VLDLNNN-------GLTDEGASALAETLASLKS-LEVLNLGDNNLTDAGAAALASALLSP 248

Query: 230 HLSLRNASLTDVSLHQLSSLS 250
           ++SL   SL+   +    +  
Sbjct: 249 NISLLTLSLSCNDITDDGAKD 269

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 58/255 (22%), Positives = 100/255 (39%), Gaps = 21/255 (8%)

Query: 18  LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF---INEREAFLYIETSLLSF 74
           L  + SL+ L+ S  +     E   N  PL  + L        I+E      + +  L  
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTS--LDL 123

Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
            + + + +     L +   L+ LDLS + I      +      NL+NL+LS    S    
Sbjct: 124 DNNNITDIPPLIGLLKSN-LKELDLSDNKIESLPSPLRNL--PNLKNLDLSFNDLSDLPK 180

Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL- 193
             L  +L NL  L LSG +I D     + ++ +L+ +D+SN  I   +  +    +L   
Sbjct: 181 --LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237

Query: 194 ---------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 244
                       ++ NL++LE L+L   Q+S  +     T    + LS  + S     + 
Sbjct: 238 ELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 245 QLSSLSKLTNLSIRD 259
            L  L +L    +  
Sbjct: 298 LLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 23/134 (17%)

Query: 165 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN-----------------HLERL 207
           +P + F+DISN +++G I     +      + +LQ L+                  LE L
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWD------MPSLQMLSLARNKFFGGLPDSFGSKRLENL 480

Query: 208 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 267
           +L + Q S A    L +  EL+ L L    L+     +LSS  KL +L +    L+    
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 268 GSFKPPRSLKLLDL 281
            SF     L  LDL
Sbjct: 541 ASFSEMPVLSQLDL 554

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 90  QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 149
           ++  ++ ++LS++ +     + +    ++LR LNLSN  F+ +   I  G +PNLE L L
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS---IPRGSIPNLETLDL 147

Query: 150 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 209
           S   +     + +    SLK +D+    + G I              +L NL  LE L L
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP------------NSLTNLTSLEFLTL 195

Query: 210 EQTQVSDATLFPLSTFKEL--IHLSLRNAS-LTDVSLHQLSSLSKL 252
              Q+       L   K L  I+L   N S      +  L+SL+ L
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177
           NL++L+LSN R +    G   G LPNL++L LSG  +   +    S +PSL+ +D+S  +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 178 I 178
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.82
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
KOG4341	483	consensus F-box protein containing LRR [General fu	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
PLN03150	623	hypothetical protein; Provisional	98.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
PLN03150	623	hypothetical protein; Provisional	98.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG4341	483	consensus F-box protein containing LRR [General fu	98.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.28
PRK15386	426	type III secretion protein GogB; Provisional	97.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.76
KOG4308	478	consensus LRR-containing protein [Function unknown	96.71
KOG4308	478	consensus LRR-containing protein [Function unknown	96.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.67
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.79
smart00370	26	LRR Leucine-rich repeats, outliers.	92.79
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.71
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.19
smart00370	26	LRR Leucine-rich repeats, outliers.	90.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.87
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.58
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.89
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.64
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.18

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-35  Score=309.45  Aligned_cols=268  Identities=22%  Similarity=0.242  Sum_probs=153.8

Q ss_pred             CCCCcEEEccCCCCC-CCC-----CCCCCcEEEccCCCchh-HHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccE
Q 016686            2 FPRLSFLNLAWTGVT-KLP-----NISSLECLNLSNCTIDS-ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF   74 (384)
Q Consensus         2 l~~L~~L~l~~n~i~-~l~-----~~~~L~~L~ls~n~i~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~   74 (384)
                      +++|+.|++++|.+. .+|     .+++|++|++++|.+.+ +|.  ..+++|++|++++|.+++..+. .+.++++|++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~  168 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKV  168 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCE
Confidence            577788888877765 233     56677777777776653 332  2456666666666666543222 2346666666


Q ss_pred             EEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           75 LDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        75 L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      |++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n  246 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYN  246 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhH-hcCCCCCEEECcCc
Confidence            66666665433  345566666666666666665566666666 666666666666665555444 45666666666666


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS  232 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  232 (384)
                      .+.+..|..+..+++|+.|++++|.+.+..|.            .+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP------------SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCch------------hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence            66555555666666666666666666555444            344455555555555555544444445555555555


Q ss_pred             cCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       233 L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      +++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence            555555544444455555555555555555444444444444555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-35  Score=307.53  Aligned_cols=266  Identities=20%  Similarity=0.244  Sum_probs=168.6

Q ss_pred             CCcEEEccCCCCCC-----CCCCCCCcEEEccCCCch-hHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            4 RLSFLNLAWTGVTK-----LPNISSLECLNLSNCTID-SILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         4 ~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++.|++++|.+++     +..+++|+.|++++|.+. .+|..++ .+++|++|++++|.+++..+.   ..+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence            45666666666553     235666666666666665 4565555 666666666666666543322   2456666666


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI  154 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i  154 (384)
                      +++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|.+
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNL  224 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCcc
Confidence            666666533  345666666666666666666666666666 666666666666665555544 4566666666666666


Q ss_pred             ChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcC
Q 016686          155 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR  234 (384)
Q Consensus       155 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~  234 (384)
                      .+..|..+..+++|++|++++|.+.+..|.            .+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPS------------SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccCh------------hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence            666666666666666666666666655555            46666666666666666666566666666666666666


Q ss_pred             CCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       235 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      +|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence            6666666666666666666666666666666666666666666666666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-33  Score=254.59  Aligned_cols=342  Identities=19%  Similarity=0.181  Sum_probs=280.6

Q ss_pred             CCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            4 RLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         4 ~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      .-+.||+++|.+..     +.++++|+++++..|.++.||.......+|+.|+|.+|.|+.+... .+.-++.|+.||||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhhh
Confidence            34679999999886     4589999999999999999998777888899999999999887654 35577999999999


Q ss_pred             cCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCCh
Q 016686           79 NSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD  156 (384)
Q Consensus        79 ~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~  156 (384)
                      .|.|+.+  +.+..-.++++|+|++|.|+....++|..+ .+|..|.|+.|+++...+..| +.+++|+.|++..|+|.-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccccCHHHh-hhcchhhhhhccccceee
Confidence            9999888  567777789999999999998888889988 899999999999997766665 779999999999999864


Q ss_pred             HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686          157 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA  236 (384)
Q Consensus       157 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  236 (384)
                      .--..|.++++|+.|.+..|.+......            +|..+.++++|+++.|+++.....++.+++.|+.|++++|
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG------------~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDG------------AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCc------------ceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            4345688999999999999999877666            6888999999999999999887788889999999999999


Q ss_pred             CCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686          237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ  316 (384)
Q Consensus       237 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  316 (384)
                      .|..+.++.+..+++|+.|++++|+|+...+..|..+..|++|.|+.|.+..-  -...+..+.+++       .+++..
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l--~e~af~~lssL~-------~LdLr~  374 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL--AEGAFVGLSSLH-------KLDLRS  374 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH--HhhHHHHhhhhh-------hhcCcC
Confidence            99988888888899999999999999998888888899999999999987321  122233445555       567777


Q ss_pred             cccCCCCCC------chhhhhhh---hhhcCCCCCCc-hhhHHhhhhhcHHHHHhhhcccccccCCCCCc
Q 016686          317 IGSNGPSPS------RTSLRASL---VKQKQDPMPMS-HSFLDQRLKYSREELLELQYSSLSLARPDDSS  376 (384)
Q Consensus       317 n~~~~~~p~------~~~~~~~l---~n~l~~~ip~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  376 (384)
                      |.++..|-+      .+..++++   .|++. .||.. +      ..+..|+.|||.+|.|...-|.-++
T Consensus       375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAf------sgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAF------SGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             CeEEEEEecchhhhccchhhhheeecCceee-ecchhhh------ccCcccceecCCCCcceeecccccc
Confidence            776554322      23344444   77777 56665 5      7899999999999999887775443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=3.1e-31  Score=241.40  Aligned_cols=306  Identities=19%  Similarity=0.230  Sum_probs=196.1

Q ss_pred             CCCCCcEEEccCCCCCCCCCC----CCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            1 MFPRLSFLNLAWTGVTKLPNI----SSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         1 ~l~~L~~L~l~~n~i~~l~~~----~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      ++++|+++++.+|.++.+|..    .+|+.|++.+|.|+++.. .+..++.|+.||||.|.++.++.. .|..-+++++|
T Consensus       100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L  178 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKL  178 (873)
T ss_pred             cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEE
Confidence            367777777777777766532    246666666666654322 222445555555555555554433 23444555555


Q ss_pred             EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC------------------------C
Q 016686           76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR------------------------F  129 (384)
Q Consensus        76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~------------------------l  129 (384)
                      +|++|.|+.+  ..|..+.+|..|.|+.|.++...+..|.++ ++|+.|+|..|+                        +
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence            5555555544  344444455555555555554444444444 555555555554                        4


Q ss_pred             CchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEc
Q 016686          130 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL  209 (384)
Q Consensus       130 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  209 (384)
                      .......|. .+.++++|++..|+++.....++.++++|+.|++++|.|....++            ++..+++|+.|++
T Consensus       258 ~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d------------~WsftqkL~~LdL  324 (873)
T KOG4194|consen  258 SKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID------------SWSFTQKLKELDL  324 (873)
T ss_pred             ccccCccee-eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc------------hhhhcccceeEec
Confidence            433333332 255677777777777666556666777777777777777666555            6777788888888


Q ss_pred             cCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc---ccccccCCCCCCEEEccCCcC
Q 016686          210 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS---GLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       210 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      +.|+++...+..+..++.|++|+|++|.++......|..+++|++|+++.|.+...   ....|..+++|+.|++.+|++
T Consensus       325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence            88888887777788888888888888888877777788888888888888886653   234566778888888888887


Q ss_pred             CCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhh
Q 016686          287 LTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLR  330 (384)
Q Consensus       287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~  330 (384)
                      .+  .....+.+++.++       .+++-+|.+-..-|..+..+
T Consensus       405 k~--I~krAfsgl~~LE-------~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  405 KS--IPKRAFSGLEALE-------HLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             ee--cchhhhccCcccc-------eecCCCCcceeecccccccc
Confidence            43  3345566777777       67888888776666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=2.1e-29  Score=231.42  Aligned_cols=330  Identities=18%  Similarity=0.212  Sum_probs=266.8

Q ss_pred             CCCCcEEEccCCCCCC--CC----CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTK--LP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~--l~----~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +|.++.+|+++|++++  +|    .|.+++.|.+...++..+|..++.+.+|++|.+++|++..+...+.  .+|.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs--~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS--DLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc--cchhhHHH
Confidence            5778899999999984  55    6889999999999999999999999999999999999998877654  89999999


Q ss_pred             EeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           76 DVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        76 ~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      .+..|++...   +.+.++..|+.|||++|++. .+|..+... .++-.|+|+.|+|.. +|..++-++..|-.|+++.|
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh-cCcEEEEcccCcccc-CCchHHHhhHhHhhhccccc
Confidence            9999988544   57888999999999999998 688888887 899999999999984 45555567899999999999


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC-cccccccccCCCCcEE
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHL  231 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L  231 (384)
                      ++. ..|..+..+..|++|++++|.+....-.            .+..+++|+.|++++.+-+ .-+|..+..+.+|..+
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr------------QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLR------------QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHh------------cCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence            986 5566788999999999999988654222            3455678888899887433 3367888899999999


Q ss_pred             EcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccc
Q 016686          232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVI  311 (384)
Q Consensus       232 ~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~  311 (384)
                      +++.|.+.. .|+.+.++++|+.|++++|+|+..... .....+|++|+++.|+++..  +..+| .++++.       .
T Consensus       228 DlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L--P~avc-KL~kL~-------k  295 (1255)
T KOG0444|consen  228 DLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL--PDAVC-KLTKLT-------K  295 (1255)
T ss_pred             cccccCCCc-chHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc--hHHHh-hhHHHH-------H
Confidence            999999886 788999999999999999999875432 23447899999999998553  23333 334443       3


Q ss_pred             cCCCccccC-CCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686          312 CPSDQIGSN-GPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS  368 (384)
Q Consensus       312 ~~l~~n~~~-~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~  368 (384)
                      +-+..|+++ .-||..|+++..+      +|.+. -+|+++      +.|.+|+.|.|++|++-
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl------cRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL------CRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh------hhhHHHHHhccccccee
Confidence            344455543 3488999988887      66666 679988      89999999999999873

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=6.7e-28  Score=221.57  Aligned_cols=264  Identities=19%  Similarity=0.243  Sum_probs=138.6

Q ss_pred             CCCcEEEccCCCCCC----CCCCCCCcEEEccCCCch--hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK----LPNISSLECLNLSNCTID--SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~----l~~~~~L~~L~ls~n~i~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      .+|++|.+++|++..    +..+|.|+.+++..|++.  +||.+++.+..|+.|+||+|+++..|..+.  ...++-+|+
T Consensus        55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE--~AKn~iVLN  132 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE--YAKNSIVLN  132 (1255)
T ss_pred             hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh--hhcCcEEEE
Confidence            345555555555442    335555555555555544  456666666666666666666655555433  345555566


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI  154 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i  154 (384)
                      ||+|+|..+  +.+-+++.|-.|||++|.+. ..|+.+.++ ..|+.|.|++|.+.......+ -.+++|++|.+++.+-
T Consensus       133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL-SMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             cccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHH-hhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccc
Confidence            666665555  34445555555566666555 345555555 556666666555543333322 2244555555554442


Q ss_pred             C-hHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEc
Q 016686          155 D-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL  233 (384)
Q Consensus       155 ~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L  233 (384)
                      + ...|..+..+.+|..+|++.|.+..+ |.            .+.++++|+.|++++|.++.. ....+.+.+|++|++
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pe------------cly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLPIV-PE------------CLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNL  275 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCCcc-hH------------HHhhhhhhheeccCcCceeee-eccHHHHhhhhhhcc
Confidence            2 22344445555555566665555432 33            344555566666666655542 222334455555666


Q ss_pred             CCCCCChhhHHhccCCCCCCEEEccCCccCcc-ccccccCCCCCCEEEccCCcC
Q 016686          234 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       234 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      ++|+++. .|.+++.+++|+.|.+.+|+++-. +|..++.+..|+.+..++|.+
T Consensus       276 SrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  276 SRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             ccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            6665554 455555555666665555554432 344555555555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=1e-27  Score=209.66  Aligned_cols=341  Identities=20%  Similarity=0.192  Sum_probs=203.4

Q ss_pred             CCCcEEEccCCCCCCCC----CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            3 PRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~----~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      ..++.++.++|.+..++    .+..++.++-.+|+|..+|.+++++.++..+++.+|.++..++...  +|..|++|+..
T Consensus       114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~  191 (565)
T KOG0472|consen  114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI--AMKRLKHLDCN  191 (565)
T ss_pred             hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH--HHHHHHhcccc
Confidence            34555556666554332    4555566666666666666666666666666666666655555432  35556666666


Q ss_pred             cCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686           79 NSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY  157 (384)
Q Consensus        79 ~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  157 (384)
                      .|.+..+ +.++.+.+|..|++..|.+. ..| .|..+ ..|.+++++.|++. ..+.+..++++++..||++.|++. .
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e  266 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-E  266 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-c
Confidence            5555555 45555555666666666555 233 44444 55566666665554 344444456666666666666665 4


Q ss_pred             HHHhhhCCCCccEEEeeCCcCCcchhhccc--------chhhh----------------hhH------------------
Q 016686          158 AISYMSMMPSLKFIDISNTDIKGFIQQVGA--------ETDLV----------------LSL------------------  195 (384)
Q Consensus       158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--------~~~~~----------------~~~------------------  195 (384)
                      .|+.++.+.+|..||+++|.+++.++..+.        ..|++                +.+                  
T Consensus       267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             CchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            455566666666666666666654332110        00111                111                  


Q ss_pred             ---------HhhcCCCCCCEEEccCCCCCcccccccc--cCCCCcEEEcCCCCCC-----------------------hh
Q 016686          196 ---------TALQNLNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLT-----------------------DV  241 (384)
Q Consensus       196 ---------~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~L~~n~i~-----------------------~~  241 (384)
                               +......+.+.|++++-+++.++...|.  +-.-+...++++|++.                       +.
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf  426 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF  426 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc
Confidence                     1111223455566666555554333332  1122455566666543                       33


Q ss_pred             hHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCC
Q 016686          242 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG  321 (384)
Q Consensus       242 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~  321 (384)
                      +|..++.+++|..|++++|.+.+ .|..++.+-.|+.++++.|+|..   .+.++.....++       .+-.+.|++..
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~---lP~~~y~lq~lE-------tllas~nqi~~  495 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRM---LPECLYELQTLE-------TLLASNNQIGS  495 (565)
T ss_pred             chHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccccccccc---chHHHhhHHHHH-------HHHhccccccc
Confidence            56677788999999999999887 66677777789999999998733   333444444444       33445677765


Q ss_pred             CCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686          322 PSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS  368 (384)
Q Consensus       322 ~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~  368 (384)
                      .-|..+..++++      +|.+. .||..+      ++|++|+.|++++|+|.
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~L------gnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPIL------GNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhh------ccccceeEEEecCCccC
Confidence            555558888877      66666 689999      99999999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=1.1e-26  Score=203.13  Aligned_cols=259  Identities=19%  Similarity=0.243  Sum_probs=194.1

Q ss_pred             CCcEEEccCCCCCC----CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686            4 RLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN   79 (384)
Q Consensus         4 ~L~~L~l~~n~i~~----l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~   79 (384)
                      -++.+.+++|.+..    +.++..+..+++.+|+...+|++++.+..++.+++++|.+..+++...  .++.|..++.++
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~--s~~~l~~l~~s~  123 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIG--SLISLVKLDCSS  123 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHh--hhhhhhhhhccc
Confidence            35667788887765    447778888888888888888888888888888888888888887654  778888888888


Q ss_pred             CCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           80 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        80 n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      |.+... +.++.+-.++.++..+|+++ ..|..+..+ .++..+++.+|++....+..+  .++.|++|+...|.++ ..
T Consensus       124 n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~-~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  124 NELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNL-SKLSKLDLEGNKLKALPENHI--AMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             cceeecCchHHHHhhhhhhhccccccc-cCchHHHHH-HHHHHhhccccchhhCCHHHH--HHHHHHhcccchhhhh-cC
Confidence            887766 67778888888888888888 567777777 788888888888876655554  3778888888777665 56


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i  238 (384)
                      |..++.+.+|..|++..|++...+              .|.+|..|++|+++.|++.-........++++.+|++..|++
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~~lP--------------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIRFLP--------------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccccCC--------------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence            677888888888888888877543              366677777777777776654444444677777777777777


Q ss_pred             ChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      ++ .|..+..+.+|+.|++++|.|++ .|..++++ +|+.|.+.+|++
T Consensus       265 ke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  265 KE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             cc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence            76 46666667777777777777776 45566666 777777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=4.7e-24  Score=204.21  Aligned_cols=328  Identities=19%  Similarity=0.217  Sum_probs=201.2

Q ss_pred             CCcEEEccCCCCCCCC----CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686            4 RLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN   79 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~----~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~   79 (384)
                      +|+.||+++|.+.++|    .+.+|+.|.++.|.|..+|....++.+|+++.|.+|.+...|..+.  .+.+|+.|+++.
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~--~lknl~~LdlS~  123 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS--ELKNLQYLDLSF  123 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH--hhhcccccccch
Confidence            5889999999988866    5668888888888888888777788888888888888887776543  778888888888


Q ss_pred             CCCCCcc-cccCCCC-------------------ccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHH--
Q 016686           80 SSLSRFC-FLTQMKA-------------------LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL--  137 (384)
Q Consensus        80 n~l~~~~-~~~~~~~-------------------L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--  137 (384)
                      |.+..++ .+..+..                   ++.+++..|.+.+.++..+..+ ..  .++|.+|.+.......+  
T Consensus       124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l-~~--~ldLr~N~~~~~dls~~~~  200 (1081)
T KOG0618|consen  124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL-TH--QLDLRYNEMEVLDLSNLAN  200 (1081)
T ss_pred             hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh-he--eeecccchhhhhhhhhccc
Confidence            8776552 1111111                   3333333333333333333222 11  24444444331100000  


Q ss_pred             ------------------------------------HhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          138 ------------------------------------AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       138 ------------------------------------~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                                                          .....+|+.++++.|.+.+. |.|++.+.+|+.+++..|+++..
T Consensus       201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~l  279 (1081)
T KOG0618|consen  201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVAL  279 (1081)
T ss_pred             hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhh
Confidence                                                00112455555555555533 36666777777777777776543


Q ss_pred             hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhc---------------
Q 016686          182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---------------  246 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------  246 (384)
                      +..             +...++|+.+.+..|.+.. +|+...+.++|++|+|..|++.......+               
T Consensus       280 p~r-------------i~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n  345 (1081)
T KOG0618|consen  280 PLR-------------ISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN  345 (1081)
T ss_pred             HHH-------------HhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence            322             3334445555555555544 33444455666666666666554321111               


Q ss_pred             ----------cCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686          247 ----------SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ  316 (384)
Q Consensus       247 ----------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  316 (384)
                                ...+.|+.|.+.+|.+++.....+....+||.|+|++|++.+.  +.....+++.++       .+.+++
T Consensus       346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f--pas~~~kle~Le-------eL~LSG  416 (1081)
T KOG0618|consen  346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF--PASKLRKLEELE-------ELNLSG  416 (1081)
T ss_pred             cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC--CHHHHhchHHhH-------HHhccc
Confidence                      1234577778888888887777777788888888888887543  344455666666       778888


Q ss_pred             cccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686          317 IGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL  369 (384)
Q Consensus       317 n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~  369 (384)
                      |.++ .+|+.+..++.+      .|++. ..|+ +      .++++|+.+|++.|.++.
T Consensus       417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe-~------~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPE-L------AQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             chhh-hhhHHHHhhhhhHHHhhcCCcee-echh-h------hhcCcceEEecccchhhh
Confidence            8887 677888887777      66666 3463 3      367777777777777654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1.8e-23  Score=182.79  Aligned_cols=286  Identities=19%  Similarity=0.161  Sum_probs=208.2

Q ss_pred             EccCCCCCCCC-CCC-CCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec-CCCCC
Q 016686            9 NLAWTGVTKLP-NIS-SLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN-SSLSR   84 (384)
Q Consensus         9 ~l~~n~i~~l~-~~~-~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~   84 (384)
                      +-++-+++.+| ++| ...+++|..|.|+.||+..| .+++|++|||++|.|+.+.+. +|..++.|..|.+-+ |+|+.
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchhh
Confidence            34444555666 444 67889999999999988887 889999999999999988776 577888877766655 88888


Q ss_pred             c--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC-ChH----
Q 016686           85 F--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI-DDY----  157 (384)
Q Consensus        85 ~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i-~~~----  157 (384)
                      +  ..|..+..++.|.+..|++.-...+.+..+ +++..|.+.+|.+....-..+ ..+..++.+.+..|.+ .+.    
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q~i~~~tf-~~l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQSICKGTF-QGLAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhhhhccccc-cchhccchHhhhcCccccccccch
Confidence            8  578888888999898888887778888888 899999999888763322232 4567777777776662 111    


Q ss_pred             -------HHHhhhCCCCccEEEeeCCcCCcchhhcc------------cchhhh--hhHHhhcCCCCCCEEEccCCCCCc
Q 016686          158 -------AISYMSMMPSLKFIDISNTDIKGFIQQVG------------AETDLV--LSLTALQNLNHLERLNLEQTQVSD  216 (384)
Q Consensus       158 -------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~------------~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~  216 (384)
                             .+-.+++..-.....+.+.++....+.-|            .+..+.  .-...|..+++|+.+++++|++++
T Consensus       209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence                   11111111111111111111111100000            000000  001268899999999999999999


Q ss_pred             ccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686          217 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  296 (384)
Q Consensus       217 ~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  296 (384)
                      +-..+|.+...++.|.|.+|++..+...+|.+++.|+.|++.+|+|+...+..|....+|.+|.+-.|++.+.+.+..+.
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~  368 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG  368 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHH
Confidence            98889999999999999999999988889999999999999999999999999999999999999999998877765544


Q ss_pred             H
Q 016686          297 K  297 (384)
Q Consensus       297 ~  297 (384)
                      .
T Consensus       369 ~  369 (498)
T KOG4237|consen  369 E  369 (498)
T ss_pred             H
Confidence            3

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.82  E-value=4.9e-22  Score=190.51  Aligned_cols=264  Identities=23%  Similarity=0.298  Sum_probs=213.3

Q ss_pred             CCCcEEEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686            3 PRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN   79 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~   79 (384)
                      ++|+.|+.+.|.+..+   +...+|++++++.|++..+|+++..+.+|+.+...+|.++.++....  .+.+|+.|.+.+
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhh
Confidence            4566666666665532   34558999999999999999888899999999999999988876543  678999999999


Q ss_pred             CCCCCc-ccccCCCCccEEEeeCCCCCchhHHH-HHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686           80 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY  157 (384)
Q Consensus        80 n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  157 (384)
                      |.+..+ +.....++|++|++..|.+.. .|+. +......++.++.+.|.+.... ..-....+.|+.|++.+|.+++.
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCccccc
Confidence            998888 455669999999999999984 4443 3333134778888888776432 11112457899999999999988


Q ss_pred             HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCC
Q 016686          158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  237 (384)
Q Consensus       158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  237 (384)
                      ....+..++.|+.|++++|++..++..            .+.++..|+.|++++|.++. +|..+..+..|++|...+|+
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~~fpas------------~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLNSFPAS------------KLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             chhhhccccceeeeeecccccccCCHH------------HHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCc
Confidence            878889999999999999999887666            78899999999999999998 56888899999999999999


Q ss_pred             CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCc
Q 016686          238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  285 (384)
Q Consensus       238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  285 (384)
                      +... | .+..++.|+.+|++.|.++......-.+.+.|++||+++|.
T Consensus       442 l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  442 LLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             eeec-h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9874 4 78899999999999999987654433344899999999997

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.82  E-value=1.3e-19  Score=165.74  Aligned_cols=188  Identities=26%  Similarity=0.329  Sum_probs=86.5

Q ss_pred             CCCCccEEEeeCCCCCchhHHHHHhccCC---ccEEEccCCCCCchHHHH---HHhCC-CCCCEEeccCCCCCh----HH
Q 016686           90 QMKALEHLDLSSSMIGDDSVEMVACVGAN---LRNLNLSNTRFSSAGVGI---LAGHL-PNLEILSLSGTQIDD----YA  158 (384)
Q Consensus        90 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~---L~~L~L~~n~l~~~~~~~---~~~~l-~~L~~L~l~~n~i~~----~~  158 (384)
                      .+++|++|++++|.+....+..+..+ ..   |+.|++++|+++......   ....+ ++|++|++++|.+++    ..
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            34445555555554443333333333 22   555555555544222111   11223 455555555555542    12


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc----cccccCCCCcEEEcC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLR  234 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~  234 (384)
                      ...+..++.|++|++++|.+.+.....        ..+.+..+++|+.|++++|.+++...    ..+..+++|++|+++
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~--------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRA--------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG  229 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHH--------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence            223344455555555555554321100        00023334556666666655543322    223345556666666


Q ss_pred             CCCCChhhHHhcc-----CCCCCCEEEccCCccCcccc----ccccCCCCCCEEEccCCcC
Q 016686          235 NASLTDVSLHQLS-----SLSKLTNLSIRDAVLTNSGL----GSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       235 ~n~i~~~~~~~l~-----~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~  286 (384)
                      +|.+++.....+.     ..+.|++|++++|.+++.+.    ..+...++|+++++++|.+
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            6666543332222     12566666666666653222    2333345666666666666

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.82  E-value=1.2e-19  Score=190.42  Aligned_cols=321  Identities=18%  Similarity=0.175  Sum_probs=207.6

Q ss_pred             CCCCcEEEccCCCCC-----------CCCCC-CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCC
Q 016686            2 FPRLSFLNLAWTGVT-----------KLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET   69 (384)
Q Consensus         2 l~~L~~L~l~~n~i~-----------~l~~~-~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l   69 (384)
                      +++|+.|.+..+...           ++..+ ++|+.|.+.++.+..+|..+ ...+|++|+++++.+..++..  +..+
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~--~~~l  633 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG--VHSL  633 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc--cccC
Confidence            567888887655321           12233 36888999888888888766 578899999999888877654  3478


Q ss_pred             CCccEEEeecCC-CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEe
Q 016686           70 SLLSFLDVSNSS-LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  148 (384)
Q Consensus        70 ~~L~~L~ls~n~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  148 (384)
                      ++|+.|+++++. +..++.+..+++|+.|++++|.....+|..+..+ ++|+.|++++|..-...|..+  .+++|+.|+
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~  710 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPTGI--NLKSLYRLN  710 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCCcC--CCCCCCEEe
Confidence            899999998764 5566778888999999999887666778888888 899999999875333444332  578899999


Q ss_pred             ccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCc-------ccccc
Q 016686          149 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-------ATLFP  221 (384)
Q Consensus       149 l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~  221 (384)
                      +++|......|.   ...+|+.|++++|.+...+..             + .+++|+.|++.++....       ..+..
T Consensus       711 Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~-------------~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        711 LSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSN-------------L-RLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             CCCCCCcccccc---ccCCcCeeecCCCcccccccc-------------c-cccccccccccccchhhccccccccchhh
Confidence            988865433332   245788889988887654322             1 45666666666532111       11111


Q ss_pred             cccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCC
Q 016686          222 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR  301 (384)
Q Consensus       222 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  301 (384)
                      ...+++|+.|++++|.....+|..++++++|+.|++++|..-+..|..+ .+++|+.|++++|.....  +.   ...++
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~--~p---~~~~n  847 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT--FP---DISTN  847 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc--cc---ccccc
Confidence            2234677788887776666667777778888888887765333344443 567778888877754220  00   01112


Q ss_pred             ceeecccccccCCCccccCCCCCCchhhhhhh-------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccc
Q 016686          302 IEVWHELSVICPSDQIGSNGPSPSRTSLRASL-------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSS  366 (384)
Q Consensus       302 l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l-------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~  366 (384)
                      ++       .+.+++|.+. .+|.++..++++       .+.+. .+|..+      ..+++|+.+++++|.
T Consensus       848 L~-------~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~------~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        848 IS-------DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNI------SKLKHLETVDFSDCG  904 (1153)
T ss_pred             cC-------EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccc------ccccCCCeeecCCCc
Confidence            22       4566666665 467666666655       24444 345554      455566666666554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=2.4e-19  Score=176.31  Aligned_cols=247  Identities=19%  Similarity=0.159  Sum_probs=135.3

Q ss_pred             CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686            5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL   82 (384)
Q Consensus         5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l   82 (384)
                      -..|+++++.++.+|.  .++|+.|++++|+++.+|..   .++|++|++++|.++.++..     .++|+.|++++|.+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-----p~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-----PPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc-----ccccceeeccCCch
Confidence            4567777777777763  24677788888777776642   46777888887777766531     25677777777776


Q ss_pred             CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhh
Q 016686           83 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM  162 (384)
Q Consensus        83 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l  162 (384)
                      ..++.+  ..+|+.|++++|+++. +|.   .. ++|+.|++++|++.+. +.    ....|+.|++++|.++.. |.  
T Consensus       275 ~~Lp~l--p~~L~~L~Ls~N~Lt~-LP~---~p-~~L~~LdLS~N~L~~L-p~----lp~~L~~L~Ls~N~L~~L-P~--  339 (788)
T PRK15387        275 THLPAL--PSGLCKLWIFGNQLTS-LPV---LP-PGLQELSVSDNQLASL-PA----LPSELCKLWAYNNQLTSL-PT--  339 (788)
T ss_pred             hhhhhc--hhhcCEEECcCCcccc-ccc---cc-cccceeECCCCccccC-CC----CcccccccccccCccccc-cc--
Confidence            655432  2456677777777663 332   12 5677777777766642 11    123455666666665532 21  


Q ss_pred             hCCCCccEEEeeCCcCCcchhhc--c----cchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686          163 SMMPSLKFIDISNTDIKGFIQQV--G----AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA  236 (384)
Q Consensus       163 ~~~~~L~~L~l~~n~l~~~~~~~--~----~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  236 (384)
                       ...+|+.|++++|++++.++..  .    ...|.+..++.  ...+|+.|++++|.+++. |..   .++|+.|++++|
T Consensus       340 -lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N  412 (788)
T PRK15387        340 -LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSL-PVL---PSELKELMVSGN  412 (788)
T ss_pred             -cccccceEecCCCccCCCCCCCcccceehhhccccccCcc--cccccceEEecCCcccCC-CCc---ccCCCEEEccCC
Confidence             1135666666666665432110  0    00011111111  113456666666655542 221   245666666666


Q ss_pred             CCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       237 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      .+++ +|..   ..+|+.|++++|+++. .|..+..++.|+.|++++|++
T Consensus       413 ~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        413 RLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             cCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCC
Confidence            6554 2221   2345556666666653 455555566666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=5.6e-19  Score=161.47  Aligned_cols=280  Identities=23%  Similarity=0.243  Sum_probs=182.3

Q ss_pred             EeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCC------chhHHHHHhccC
Q 016686           50 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIG------DDSVEMVACVGA  117 (384)
Q Consensus        50 L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~------~~~~~~~~~~~~  117 (384)
                      |+|.++.+++......+..++.|++|+++++.++..      ..+...+.+++++++++.+.      ...+..+..+ +
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-C   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-C
Confidence            445555544221111233455566666666665332      23445556777777766655      2344566666 8


Q ss_pred             CccEEEccCCCCCchHHHHHHhCC---CCCCEEeccCCCCChHH----HHhhhCC-CCccEEEeeCCcCCcchhhcccch
Q 016686          118 NLRNLNLSNTRFSSAGVGILAGHL---PNLEILSLSGTQIDDYA----ISYMSMM-PSLKFIDISNTDIKGFIQQVGAET  189 (384)
Q Consensus       118 ~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~----~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~  189 (384)
                      +|+.|++++|.+....+..+ ..+   ++|++|++++|.+++..    ...+..+ ++|+.|++++|.+++.....    
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~----  156 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA----  156 (319)
T ss_pred             ceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH----
Confidence            99999999999876554443 233   44999999999988433    3345566 89999999999998532210    


Q ss_pred             hhhhhHHhhcCCCCCCEEEccCCCCCccc----ccccccCCCCcEEEcCCCCCChhh----HHhccCCCCCCEEEccCCc
Q 016686          190 DLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKLTNLSIRDAV  261 (384)
Q Consensus       190 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l~~n~  261 (384)
                          ....+..+++|+.|++++|.+++..    +..+..+++|++|++++|.+++..    ...+..+++|++|++++|.
T Consensus       157 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         157 ----LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             ----HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence                0114667789999999999998542    334456679999999999998654    3456678999999999999


Q ss_pred             cCccccccccC-----CCCCCEEEccCCcCCCHHHHHHH---HHhCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686          262 LTNSGLGSFKP-----PRSLKLLDLHGGWLLTEDAILQF---CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL  333 (384)
Q Consensus       262 l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l  333 (384)
                      +++.....+..     .+.|++|++++|.+. ..+...+   ...++.++       .++++.|.++..-...+..    
T Consensus       233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~~~~~L~-------~l~l~~N~l~~~~~~~~~~----  300 (319)
T cd00116         233 LTDAGAAALASALLSPNISLLTLSLSCNDIT-DDGAKDLAEVLAEKESLL-------ELDLRGNKFGEEGAQLLAE----  300 (319)
T ss_pred             CchHHHHHHHHHHhccCCCceEEEccCCCCC-cHHHHHHHHHHhcCCCcc-------EEECCCCCCcHHHHHHHHH----
Confidence            98754443322     379999999999984 3333333   33344444       6788888776432221111    


Q ss_pred             hhhcCCCCCCchhhHHhhhhh-cHHHHHhhhcccc
Q 016686          334 VKQKQDPMPMSHSFLDQRLKY-SREELLELQYSSL  367 (384)
Q Consensus       334 ~n~l~~~ip~~~~~~~~~~~~-~~L~~L~l~~n~l  367 (384)
                                      ..... +.++.+++.+|+|
T Consensus       301 ----------------~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         301 ----------------SLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             ----------------HHhhcCCchhhcccCCCCC
Confidence                            11233 5788888888765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=2.3e-19  Score=176.39  Aligned_cols=259  Identities=17%  Similarity=0.112  Sum_probs=187.9

Q ss_pred             CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686           22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  101 (384)
Q Consensus        22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~  101 (384)
                      ..-..|+++.+.++.+|..+.  ++|+.|++++|.++.++.     ..++|++|++++|+++.++.+  .++|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccCc--ccccceeeccC
Confidence            346789999999999998776  589999999999998764     248999999999999988643  57899999999


Q ss_pred             CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      |.+. .+|..   . .+|+.|++++|+++.. +.    ..++|+.|++++|.+.+. |.   ...+|+.|++++|.+++.
T Consensus       272 N~L~-~Lp~l---p-~~L~~L~Ls~N~Lt~L-P~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        272 NPLT-HLPAL---P-SGLCKLWIFGNQLTSL-PV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             Cchh-hhhhc---h-hhcCEEECcCCccccc-cc----cccccceeECCCCccccC-CC---CcccccccccccCccccc
Confidence            9987 34432   2 6789999999998853 32    357899999999998853 22   234688999999998764


Q ss_pred             hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686          182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  261 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~  261 (384)
                      + .               ...+|+.|++++|++++. |..   .++|+.|++++|++++ +|..   .++|+.|++++|.
T Consensus       338 P-~---------------lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~  393 (788)
T PRK15387        338 P-T---------------LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNR  393 (788)
T ss_pred             c-c---------------cccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCc
Confidence            2 2               124799999999999874 332   3568888888888886 3432   3578889999888


Q ss_pred             cCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hh
Q 016686          262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VK  335 (384)
Q Consensus       262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n  335 (384)
                      ++.. |..   .++|+.|++++|++.+.+.   ..   ..+.       .+++++|+++ .+|..+..++.+      +|
T Consensus       394 Lt~L-P~l---~s~L~~LdLS~N~LssIP~---l~---~~L~-------~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        394 LTSL-PVL---PSELKELMVSGNRLTSLPM---LP---SGLL-------SLSVYRNQLT-RLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             ccCC-CCc---ccCCCEEEccCCcCCCCCc---ch---hhhh-------hhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence            8863 322   2578888888888743211   11   1122       4566777776 567777666655      66


Q ss_pred             hcCCCCCCch
Q 016686          336 QKQDPMPMSH  345 (384)
Q Consensus       336 ~l~~~ip~~~  345 (384)
                      .+++.+|..+
T Consensus       456 ~Ls~~~~~~L  465 (788)
T PRK15387        456 PLSERTLQAL  465 (788)
T ss_pred             CCCchHHHHH
Confidence            6665555443

>PLN03210 Resistant to P

Probab=99.76  E-value=2.3e-17  Score=173.31  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccc
Q 016686          143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  222 (384)
Q Consensus       143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (384)
                      +|+.|++++|......|..+..+++|+.|++++|...+.+|.            .. .+++|+.|++++|..-...|.  
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~~-~L~sL~~L~Ls~c~~L~~~p~--  843 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------GI-NLESLESLDLSGCSRLRTFPD--  843 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------CC-CccccCEEECCCCCccccccc--
Confidence            455555555443334445555555555555555543223332            11 455566666665532222222  


Q ss_pred             ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc-cCccccccccCCCCCCEEEccCCcC
Q 016686          223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       223 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                       ..++|+.|++++|.++. +|..+..+++|+.|++++|. ++. .+..+..+++|+.+++++|.-
T Consensus       844 -~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        844 -ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             -cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcc
Confidence             12456677777776665 46667777777777777743 443 444556667777777777753

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=4.9e-18  Score=167.90  Aligned_cols=245  Identities=16%  Similarity=0.159  Sum_probs=187.9

Q ss_pred             CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686            3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS   80 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n   80 (384)
                      .+...|++++++++.+|.  .++++.|++++|+++.+|..++  ++|++|++++|.++.++..+.    ++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP----DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh----ccccEEECcCC
Confidence            356789999999998884  3589999999999999988765  589999999999998876532    57999999999


Q ss_pred             CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686           81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  160 (384)
Q Consensus        81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  160 (384)
                      .+..++.. ...+|+.|++++|.+. .+|..+.   ++|+.|++++|.++.. +..+   .++|+.|++++|.++.. |.
T Consensus       252 ~L~~LP~~-l~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~l---p~sL~~L~Ls~N~Lt~L-P~  321 (754)
T PRK15370        252 RITELPER-LPSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHL---PSGITHLNVQSNSLTAL-PE  321 (754)
T ss_pred             ccCcCChh-HhCCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccc---hhhHHHHHhcCCccccC-Cc
Confidence            98877421 1257999999999998 4565432   6899999999998853 3222   24789999999988743 33


Q ss_pred             hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh
Q 016686          161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  240 (384)
Q Consensus       161 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~  240 (384)
                      .+  .++|+.|++++|.++.....             +  .++|+.|++++|+++. +|..+  .+.|++|++++|.++.
T Consensus       322 ~l--~~sL~~L~Ls~N~Lt~LP~~-------------l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        322 TL--PPGLKTLEAGENALTSLPAS-------------L--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN  381 (754)
T ss_pred             cc--cccceeccccCCccccCChh-------------h--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence            22  36899999999998875322             2  2689999999999886 34444  3689999999999987


Q ss_pred             hhHHhccCCCCCCEEEccCCccCcccccc----ccCCCCCCEEEccCCcCC
Q 016686          241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWLL  287 (384)
Q Consensus       241 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~  287 (384)
                      . |..+.  ..|+.|++++|+++. .|..    ....+.+..+++.+|++.
T Consensus       382 L-P~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        382 L-PENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             C-CHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4 44443  468999999999885 3433    334478899999999983

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=2.5e-18  Score=169.92  Aligned_cols=250  Identities=16%  Similarity=0.165  Sum_probs=183.7

Q ss_pred             CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686           22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  101 (384)
Q Consensus        22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~  101 (384)
                      .+...|++++++++.+|..+.  ++|+.|++++|.++.++..+.    ++|+.|++++|.++.++. ....+|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPA-TLPDTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccccCCh-hhhccccEEECcC
Confidence            367889999999998887664  579999999999998876542    689999999999887742 1135799999999


Q ss_pred             CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      |.+. .+|..+.   .+|+.|++++|++.. .+..+   .++|+.|++++|.++.. |..+  .++|+.|++++|.+...
T Consensus       251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l---~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        251 NRIT-ELPERLP---SALQSLDLFHNKISC-LPENL---PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             CccC-cCChhHh---CCCCEEECcCCccCc-ccccc---CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccccC
Confidence            9988 4565543   689999999999884 34333   35899999999988743 3333  24788999999998865


Q ss_pred             hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686          182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  261 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~  261 (384)
                      +..             +  .++|+.|++++|.+++. |..+  +++|+.|++++|+++. +|..+.  ++|++|++++|.
T Consensus       320 P~~-------------l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~  378 (754)
T PRK15370        320 PET-------------L--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNA  378 (754)
T ss_pred             Ccc-------------c--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCc
Confidence            332             1  26899999999998874 4444  3789999999999886 454443  689999999999


Q ss_pred             cCccccccccCCCCCCEEEccCCcCCCHHH-HHHHHHhCCCceeecccccccCCCccccC
Q 016686          262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHPRIEVWHELSVICPSDQIGSN  320 (384)
Q Consensus       262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~~n~~~  320 (384)
                      ++.. |..+.  ..|+.|++++|++...+. +..+....+.+.       .+.+.+|.++
T Consensus       379 Lt~L-P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~-------~L~L~~Npls  428 (754)
T PRK15370        379 LTNL-PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPT-------RIIVEYNPFS  428 (754)
T ss_pred             CCCC-CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCcc-------EEEeeCCCcc
Confidence            9864 43332  478999999999854322 333333334443       4567777766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.71  E-value=3.4e-19  Score=156.23  Aligned_cols=245  Identities=19%  Similarity=0.196  Sum_probs=184.1

Q ss_pred             CCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccC-CCCCchhHHhhhcCCCCccEEE
Q 016686            4 RLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAG-TTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      .-.+++|..|+|+.||     .+++|++|||++|.|+.|.++.| .++.|.+|-+.+ |.|+.++.. .|..+..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~-~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG-AFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh-HhhhHHHHHHHh
Confidence            3467899999999876     78899999999999998755555 888888887776 899999877 588899999999


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCC------c------hHHHHHHhCCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS------S------AGVGILAGHLP  142 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~------~------~~~~~~~~~l~  142 (384)
                      +.-|.+.-+  ..+..++++..|.+.+|.+....-..+..+ ..++.+++..|.+.      .      ..+..+ +...
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdCnL~wla~~~a~~~iet-sgar  224 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDCNLPWLADDLAMNPIET-SGAR  224 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCccccccccchhhhHHhhchhhc-ccce
Confidence            888887666  678888888888888888774333356666 67777777766521      0      000000 0000


Q ss_pred             ----------------------CCCEE---eccCC-CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686          143 ----------------------NLEIL---SLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  196 (384)
Q Consensus       143 ----------------------~L~~L---~l~~n-~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  196 (384)
                                            .++.+   ..+.+ .........|..+++|+++++++|++++.-+.            
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~------------  292 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG------------  292 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh------------
Confidence                                  11211   11122 22222345688899999999999999988777            


Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccC
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  263 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  263 (384)
                      +|.....++.|.+..|++..+-...|.+++.|++|+|.+|+|+...|.+|....+|.+|++-.|.+.
T Consensus       293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            6888999999999999988876677888999999999999999999999999999999998887753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=3.5e-17  Score=128.07  Aligned_cols=159  Identities=20%  Similarity=0.226  Sum_probs=123.5

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEE
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLD   98 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~   98 (384)
                      ++.+++.|.+|+|+++.+|+.+..+.+|+.|++++|+++..|..+.  .+++|+.|++.-|++... ..|+.++.|+.||
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is--sl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh--hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            5667788888888888888888888888888888888888877644  788888888888877666 4788888888888


Q ss_pred             eeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc
Q 016686           99 LSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD  177 (384)
Q Consensus        99 L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~  177 (384)
                      +.+|.+.. ..|..|..+ ..|+.|++++|.+.- .|..+ +.+++|+.|.+..|.+- ..|..++.++.|++|.+.+|+
T Consensus       109 ltynnl~e~~lpgnff~m-~tlralyl~dndfe~-lp~dv-g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYM-TTLRALYLGDNDFEI-LPPDV-GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             ccccccccccCCcchhHH-HHHHHHHhcCCCccc-CChhh-hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            88887754 466667667 788888888888763 34443 67888888888888765 456778888888888888888


Q ss_pred             CCcchhh
Q 016686          178 IKGFIQQ  184 (384)
Q Consensus       178 l~~~~~~  184 (384)
                      ++-.+|.
T Consensus       185 l~vlppe  191 (264)
T KOG0617|consen  185 LTVLPPE  191 (264)
T ss_pred             eeecChh
Confidence            8765554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.50  E-value=3.1e-14  Score=123.61  Aligned_cols=139  Identities=20%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             CCCCCCEEeccCCCCChH----HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC
Q 016686          140 HLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  215 (384)
Q Consensus       140 ~l~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  215 (384)
                      .-+.|+++....|++.+.    ....|...+.|+.+.+..|.+.......        -...+..+++|+.||+.+|.++
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a--------l~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA--------LAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH--------HHHHHHhCCcceeeecccchhh
Confidence            345788888877776532    2344556677888888887765331110        0115677788888888888776


Q ss_pred             ccc----ccccccCCCCcEEEcCCCCCChhhHHhc-----cCCCCCCEEEccCCccCcccccc----ccCCCCCCEEEcc
Q 016686          216 DAT----LFPLSTFKELIHLSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLH  282 (384)
Q Consensus       216 ~~~----~~~l~~~~~L~~L~L~~n~i~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~  282 (384)
                      ...    ...++.+++|+.+++++|.+......++     ...|.|+.+.+.+|.|+......    +...+.|..|+|+
T Consensus       227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence            543    3345567778888888887765443333     24677888888888777654332    2334778888888


Q ss_pred             CCcC
Q 016686          283 GGWL  286 (384)
Q Consensus       283 ~n~~  286 (384)
                      +|++
T Consensus       307 gN~l  310 (382)
T KOG1909|consen  307 GNRL  310 (382)
T ss_pred             cccc
Confidence            8876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=7.7e-17  Score=126.17  Aligned_cols=158  Identities=14%  Similarity=0.248  Sum_probs=107.7

Q ss_pred             hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCC
Q 016686           40 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  118 (384)
Q Consensus        40 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  118 (384)
                      +++++.+++.|.+|+|.++.+++..+  .+.+|+.|++++|+|... ..++++++|++|+++.|.+. ..|..|+.+ |.
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~-p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF-PA  103 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHH--HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCC-ch
Confidence            55678888888888888888887655  788888888888888777 57788888888888888776 567777777 78


Q ss_pred             ccEEEccCCCCCc-hHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686          119 LRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  197 (384)
Q Consensus       119 L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  197 (384)
                      |+.|+++.|++.. ..|..|+ .+..|+.|+++.|.+. ..|..++.+++|+.|.+..|.+...+.             .
T Consensus       104 levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpk-------------e  168 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPK-------------E  168 (264)
T ss_pred             hhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcH-------------H
Confidence            8888887777653 2344443 2456666666666654 445556666666666666665544322             2


Q ss_pred             hcCCCCCCEEEccCCCCCc
Q 016686          198 LQNLNHLERLNLEQTQVSD  216 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~  216 (384)
                      ++.++.|+.|++.+|+++-
T Consensus       169 ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             HHHHHHHHHHhcccceeee
Confidence            4455555555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.47  E-value=1.4e-13  Score=119.53  Aligned_cols=235  Identities=21%  Similarity=0.218  Sum_probs=170.6

Q ss_pred             CCCCCcEEEccCCCchh-----HHhhCcCCCCccEEeccCCCCC----chhHHh-----hhcCCCCccEEEeecCCCCCc
Q 016686           20 NISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFI----NEREAF-----LYIETSLLSFLDVSNSSLSRF   85 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~-----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~-----~~~~l~~L~~L~ls~n~l~~~   85 (384)
                      .+..++.+++++|.+..     +...+.+.+.|++.++++---.    .+++.+     .+..+|+|+.++||.|-+..-
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            57788999999998862     5555557778888888864222    233322     233678999999999976433


Q ss_pred             ------ccccCCCCccEEEeeCCCCCchhHHHHHh------------ccCCccEEEccCCCCCch---HHHHHHhCCCCC
Q 016686           86 ------CFLTQMKALEHLDLSSSMIGDDSVEMVAC------------VGANLRNLNLSNTRFSSA---GVGILAGHLPNL  144 (384)
Q Consensus        86 ------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------~~~~L~~L~L~~n~l~~~---~~~~~~~~l~~L  144 (384)
                            ..+.++..|++|.|.+|++....-..++.            ..+.|+.+..+.|++...   .....++..+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence                  45677889999999999886433332221            117899999999987543   344445667899


Q ss_pred             CEEeccCCCCCh----HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc
Q 016686          145 EILSLSGTQIDD----YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF  220 (384)
Q Consensus       145 ~~L~l~~n~i~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  220 (384)
                      +.+.+..|.|..    .....+..++.|+.||+..|.++.......+        ..+..+++|+.+++++|.+......
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La--------kaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA--------KALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH--------HHhcccchheeecccccccccccHH
Confidence            999999998753    3346677999999999999998754332111        1567788999999999988876555


Q ss_pred             ccc-----cCCCCcEEEcCCCCCChh----hHHhccCCCCCCEEEccCCcc
Q 016686          221 PLS-----TFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVL  262 (384)
Q Consensus       221 ~l~-----~~~~L~~L~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l  262 (384)
                      ++.     ..+.|+.+.+.+|.|+..    ....+...+.|+.|++++|.+
T Consensus       260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            443     578999999999999754    333456689999999999999

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=7e-14  Score=124.76  Aligned_cols=185  Identities=25%  Similarity=0.314  Sum_probs=80.8

Q ss_pred             CCCCccEEEeecCCCCCc----ccccCCCCccEEEeeCCCCCchhHHHH-HhccCCccEEEccCCCCCchHHHHHHhCCC
Q 016686           68 ETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRNLNLSNTRFSSAGVGILAGHLP  142 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~  142 (384)
                      .||+++.|+|+.|-+..+    .....+|+|+.|+++.|.+..-.-... ..+ +.|+.|.+++|.++......+...+|
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l-~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL-SHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-hhhheEEeccCCCCHHHHHHHHHhCC
Confidence            344445555554444333    223344445555555444321111100 012 45555555555555444444444455


Q ss_pred             CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccc
Q 016686          143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  222 (384)
Q Consensus       143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (384)
                      +|+.|++.+|...........-+..|+.|+|++|.+......           ...+.++.|+.|.++.+.+.+......
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----------~~~~~l~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----------YKVGTLPGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----------cccccccchhhhhccccCcchhcCCCc
Confidence            555555555531111111112234455555555554433211           024445555555555555544321111


Q ss_pred             ------ccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCc
Q 016686          223 ------STFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       223 ------~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                            ..+++|++|++..|+|.+. ....+..+++|++|.+..|.+..
T Consensus       292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence                  2445566666666655332 11233344555555555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=7.4e-14  Score=124.59  Aligned_cols=212  Identities=23%  Similarity=0.255  Sum_probs=139.6

Q ss_pred             CCCCCcEEEccCCCchhHH--hhCcCCCCccEEeccCCCCCchhHHhhh-cCCCCccEEEeecCCCCCc---ccccCCCC
Q 016686           20 NISSLECLNLSNCTIDSIL--EGNENKAPLAKISLAGTTFINEREAFLY-IETSLLSFLDVSNSSLSRF---CFLTQMKA   93 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~---~~~~~~~~   93 (384)
                      ++++|+.+.+.++.+...+  .....|++++.|+||.|-+....+...+ ..+|+|+.|+++.|.+...   ..-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            6778888888888776544  2444788888888888888765544333 3578888888888876544   12225677


Q ss_pred             ccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-CCc-hHHHHHHhCCCCCCEEeccCCCCChHH-HHhhhCCCCccE
Q 016686           94 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSS-AGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKF  170 (384)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~  170 (384)
                      |+.|.+++|+++-.-..++...+|+|+.|++.+|. +.. ....   ..++.|++|+|++|.+-+.. ......++.|+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccchhh
Confidence            88888888888855444433333888889888884 221 1122   23567888888888765332 134457788888


Q ss_pred             EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc-ccccccCCCCcEEEcCCCCCCh
Q 016686          171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTD  240 (384)
Q Consensus       171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~i~~  240 (384)
                      |+++.+.+.+.....      +........+++|++|++..|++.+.. ...+..+++|+.+.+..|.+..
T Consensus       276 Lnls~tgi~si~~~d------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPD------VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhccccCcchhcCCC------ccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            888888876542110      001112346788999999998886542 2345567778888888887754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=2.7e-12  Score=104.56  Aligned_cols=135  Identities=24%  Similarity=0.252  Sum_probs=40.2

Q ss_pred             ccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc
Q 016686           10 LAWTGVTKLP---NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF   85 (384)
Q Consensus        10 l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~   85 (384)
                      ++.+.|+.++   ++.++++|++.+|.|+.+. .+. .+.+|+.|++++|.++.+..   +..++.|++|++++|.|+.+
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-
T ss_pred             cccccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC---ccChhhhhhcccCCCCCCcc
Confidence            3444455444   3445677777777777653 444 56677777777777776542   33667777777777777666


Q ss_pred             c-cc-cCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCch--HHHHHHhCCCCCCEEec
Q 016686           86 C-FL-TQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSA--GVGILAGHLPNLEILSL  149 (384)
Q Consensus        86 ~-~~-~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l  149 (384)
                      . .+ ..+++|++|++++|.|... ....+..+ ++|+.|++.+|.++..  .-..+...+|+|+.||-
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            2 33 3467777777777766531 22345555 7777777777766432  12223345777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=1.5e-12  Score=106.03  Aligned_cols=141  Identities=28%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             ccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchh
Q 016686           29 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS  108 (384)
Q Consensus        29 ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~  108 (384)
                      ++.+.|..++. ..+..++++|+|++|.|+.+..- . ..+.+|+.|++++|.|..++.+..++.|+.|++++|.++...
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L-~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENL-G-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             ---------------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred             ccccccccccc-cccccccccccccccccccccch-h-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence            44455555543 23556788999999988876532 1 146788999999999988888888889999999999888543


Q ss_pred             HHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH---HHHhhhCCCCccEEEe
Q 016686          109 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFIDI  173 (384)
Q Consensus       109 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~---~~~~l~~~~~L~~L~l  173 (384)
                      ......+ ++|+.|++++|+|.....-...+.+++|++|++.+|+++..   -...+..+|+|+.||-
T Consensus        81 ~~l~~~l-p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   81 EGLDKNL-PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHHHHH--TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cchHHhC-CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            3222346 88999999888875432212234678888888888876532   2233446677776664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.20  E-value=1.4e-11  Score=109.68  Aligned_cols=294  Identities=23%  Similarity=0.272  Sum_probs=189.2

Q ss_pred             CcEEEccCCCCCC-------CCCCCCCcEEEccCCC-chh-HHhhCc-CCCCccEEeccCC-CCCchhHHhhhcCCCCcc
Q 016686            5 LSFLNLAWTGVTK-------LPNISSLECLNLSNCT-IDS-ILEGNE-NKAPLAKISLAGT-TFINEREAFLYIETSLLS   73 (384)
Q Consensus         5 L~~L~l~~n~i~~-------l~~~~~L~~L~ls~n~-i~~-~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~   73 (384)
                      |+.|.+.++.-..       -.+||++++|.+.+|. |+. -...+. .+++|++|++..| .++...-...-..+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            5666666654222       1278888888888885 442 222333 7888888888874 455432221123578888


Q ss_pred             EEEeecCC-CCCc---ccccCCCCccEEEeeCCCC-CchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEE
Q 016686           74 FLDVSNSS-LSRF---CFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        74 ~L~ls~n~-l~~~---~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L  147 (384)
                      +|+++++. |++-   +...++..++.+.+.+|.- .......+....+.+.++++..+. ++......+...+..|+.|
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            88888874 4332   3455666667776666532 222222222221446666665653 6666555555567888999


Q ss_pred             eccCCC-CChHHHHhhh-CCCCccEEEeeCCc-CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc-cccc-
Q 016686          148 SLSGTQ-IDDYAISYMS-MMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPL-  222 (384)
Q Consensus       148 ~l~~n~-i~~~~~~~l~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l-  222 (384)
                      ..+++. +++.....+. +..+|+.+-+++++ ++...-..           .-.+++.|+.+++..+...... ...+ 
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-----------l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-----------LGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-----------hhcCChhhhhhcccccceehhhhHhhhc
Confidence            887654 5555555555 67889999999886 33321110           1245788999999888543221 2222 


Q ss_pred             ccCCCCcEEEcCCCC-CChhhHHhc----cCCCCCCEEEccCCc-cCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686          223 STFKELIHLSLRNAS-LTDVSLHQL----SSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  296 (384)
Q Consensus       223 ~~~~~L~~L~L~~n~-i~~~~~~~l----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  296 (384)
                      .+|+.|+.+.+++|. +++..-..+    ..+..++.+.+++++ +++...+.+..++.|+.+++.+|+.++.+.+..+.
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence            378999999999885 455433333    346678899999987 55556677888899999999999999999999999


Q ss_pred             HhCCCceeecccc
Q 016686          297 KMHPRIEVWHELS  309 (384)
Q Consensus       297 ~~~~~l~~~~~~~  309 (384)
                      +.+|++++.....
T Consensus       449 ~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  449 THLPNIKVHAYFA  461 (483)
T ss_pred             hhCccceehhhcc
Confidence            9999998664444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=5.1e-12  Score=107.92  Aligned_cols=223  Identities=18%  Similarity=0.215  Sum_probs=121.4

Q ss_pred             CCCCCcEEEccCCC--ch-------hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccC
Q 016686           20 NISSLECLNLSNCT--ID-------SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQ   90 (384)
Q Consensus        20 ~~~~L~~L~ls~n~--i~-------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~   90 (384)
                      -+.+|.+|.+++..  |.       .+|-++..+.+|+.+.++.+.-..+.....  .-|.|+.+...+.-+++.+.+--
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~--~kptl~t~~v~~s~~~~~~~l~p  257 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIEL--LKPTLQTICVHNTTIQDVPSLLP  257 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceee--cCchhheeeeecccccccccccc
Confidence            35567777776643  21       122233345677777777665443322111  33677777776666655544433


Q ss_pred             CCCccEEEeeC-CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCcc
Q 016686           91 MKALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  169 (384)
Q Consensus        91 ~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~  169 (384)
                      ...+....-+. ....|.....+... ..|++++|+.|.|+.. .... .-.|.++.|++++|++...  ..+..+++|+
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTW-q~LtelDLS~N~I~~i-DESv-KL~Pkir~L~lS~N~i~~v--~nLa~L~~L~  332 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTW-QELTELDLSGNLITQI-DESV-KLAPKLRRLILSQNRIRTV--QNLAELPQLQ  332 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchH-hhhhhccccccchhhh-hhhh-hhccceeEEeccccceeee--hhhhhcccce
Confidence            33333222211 11122211122222 4566777777776532 2222 3456777777777776644  3356677777


Q ss_pred             EEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChh-hHHhccC
Q 016686          170 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSS  248 (384)
Q Consensus       170 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~  248 (384)
                      .||+++|.++... .            .-..+.+.+.|.+++|.+.+.  ..+.++-+|..|++++|+|... -...+++
T Consensus       333 ~LDLS~N~Ls~~~-G------------wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~  397 (490)
T KOG1259|consen  333 LLDLSGNLLAECV-G------------WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGN  397 (490)
T ss_pred             EeecccchhHhhh-h------------hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccccc
Confidence            7777777665331 1            122456667777777766542  4455666777777777776543 2345667


Q ss_pred             CCCCCEEEccCCccCc
Q 016686          249 LSKLTNLSIRDAVLTN  264 (384)
Q Consensus       249 ~~~L~~L~l~~n~l~~  264 (384)
                      +|.|+++.+.+|++.+
T Consensus       398 LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  398 LPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccHHHHHhhcCCCccc
Confidence            7777777777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=8.4e-11  Score=110.72  Aligned_cols=196  Identities=25%  Similarity=0.299  Sum_probs=148.1

Q ss_pred             EEEccCCCC-CC---CCCCCCCcEEEccCCCchhHHhhCcCCC-CccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            7 FLNLAWTGV-TK---LPNISSLECLNLSNCTIDSILEGNENKA-PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         7 ~L~l~~n~i-~~---l~~~~~L~~L~ls~n~i~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      .++.+.+.+ ..   +...+.++.|++.+|.+..++....... +|++|++++|.+..++...  ..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~--~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL--RNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh--hccccccccccCCch
Confidence            466776765 32   3355678999999999999988887774 9999999999999885433  388999999999999


Q ss_pred             CCCccccc-CCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686           82 LSRFCFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  160 (384)
Q Consensus        82 l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  160 (384)
                      +..++... ..+.|+.|++++|.++ .+|...... ..|+++.+++|++..... . ...+.++..+.+..|++... +.
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~~~~~-~-~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSIIELLS-S-LSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcceecch-h-hhhcccccccccCCceeeec-cc
Confidence            98886554 7889999999999998 455544443 569999999996432222 2 24577888888888877642 45


Q ss_pred             hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686          161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  223 (384)
Q Consensus       161 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  223 (384)
                      .+..++.++.|++++|.++...              .+....+++.+++++|.+....+....
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~--------------~~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSIS--------------SLGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             hhccccccceeccccccccccc--------------cccccCccCEEeccCccccccchhhhc
Confidence            6778888999999999987653              356778899999999988876655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=2.5e-12  Score=118.53  Aligned_cols=171  Identities=22%  Similarity=0.272  Sum_probs=79.7

Q ss_pred             ccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEcc
Q 016686           47 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS  125 (384)
Q Consensus        47 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  125 (384)
                      -...|++.|.+..++..+.  .+..|+.+.+..|.+..+ ..+..+..|++++++.|+++ ..|..++.+  -|+.|-++
T Consensus        77 t~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--pLkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--PLKVLIVS  151 (722)
T ss_pred             hhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC--cceeEEEe
Confidence            3344555555554444322  334444455555544444 34444555555555555554 344444443  35555555


Q ss_pred             CCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCC
Q 016686          126 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE  205 (384)
Q Consensus       126 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  205 (384)
                      +|+++. .+..+ +..+.|..|+.+.|.+. ..|..++.+.+|+.|.+..|++...+++             +..++ |.
T Consensus       152 NNkl~~-lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-------------l~~Lp-Li  214 (722)
T KOG0532|consen  152 NNKLTS-LPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-------------LCSLP-LI  214 (722)
T ss_pred             cCcccc-CCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-------------HhCCc-ee
Confidence            555442 22222 23445555555555543 2333444555555555555555444333             22222 55


Q ss_pred             EEEccCCCCCcccccccccCCCCcEEEcCCCCCCh
Q 016686          206 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  240 (384)
Q Consensus       206 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~  240 (384)
                      .||++.|++.. +|..|.++++|++|-|.+|.+++
T Consensus       215 ~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  215 RLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             eeecccCceee-cchhhhhhhhheeeeeccCCCCC
Confidence            55555555544 34445555555555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.08  E-value=1.6e-11  Score=115.92  Aligned_cols=238  Identities=24%  Similarity=0.244  Sum_probs=132.9

Q ss_pred             CCCcEEEccCCCCCC----CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            3 PRLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~----l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      ..++.+.+..|.+..    +..+.+++.|++.+|.|..+...+..+++|++|++++|.|+.+...   ..++.|+.|+++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~  148 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLS  148 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheec
Confidence            345555566666554    4566677777777777776654455677777777777777766532   255667777777


Q ss_pred             cCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           79 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        79 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      +|.|..+..+..++.|+.+++++|.+....+.....+ .+++.+.+.+|.+.......   .+..+..+++..|.++...
T Consensus       149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhcccchH---HHHHHHHhhcccccceecc
Confidence            7777777666667777777777777764333103444 67777777777654332211   1223333355556554221


Q ss_pred             HHhhhCCC--CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686          159 ISYMSMMP--SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA  236 (384)
Q Consensus       159 ~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  236 (384)
                        .+....  .|+.+++++|.+.... .            .+..+..+..+++.+|.+...  ..+...+.+..+....+
T Consensus       225 --~l~~~~~~~L~~l~l~~n~i~~~~-~------------~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~  287 (414)
T KOG0531|consen  225 --GLNELVMLHLRELYLSGNRISRSP-E------------GLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN  287 (414)
T ss_pred             --CcccchhHHHHHHhcccCcccccc-c------------cccccccccccchhhcccccc--ccccccchHHHhccCcc
Confidence              111222  2666667666665431 1            244556666777776665543  22333444455555555


Q ss_pred             CCChh---hHH-hccCCCCCCEEEccCCccCc
Q 016686          237 SLTDV---SLH-QLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       237 ~i~~~---~~~-~l~~~~~L~~L~l~~n~l~~  264 (384)
                      .+...   ... ..+..+.++.+.+..|.+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  288 KLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhcchhhhhccccccccccccccccccCcccc
Confidence            44321   111 12344556666666665544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=4.5e-11  Score=102.21  Aligned_cols=180  Identities=24%  Similarity=0.298  Sum_probs=122.2

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCch----hHHh---------------hhcC---CCCccEEEe
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE----REAF---------------LYIE---TSLLSFLDV   77 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~---------------~~~~---l~~L~~L~l   77 (384)
                      -+++|..+.++.|.-..|-.-...-|.|+++.+.+..+...    |...               ....   -..|+++++
T Consensus       212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL  291 (490)
T KOG1259|consen  212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL  291 (490)
T ss_pred             HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence            45577777777776443322222456677776665443221    1100               0001   145778999


Q ss_pred             ecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCCh
Q 016686           78 SNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD  156 (384)
Q Consensus        78 s~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~  156 (384)
                      |+|.|+.+ ....-.|.++.|++++|.+..  .+.++.+ ++|+.|+|++|.++.. ..+ -..+-+++.|.++.|.+.+
T Consensus       292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L-~~L~~LDLS~N~Ls~~-~Gw-h~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  292 SGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAEL-PQLQLLDLSGNLLAEC-VGW-HLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             cccchhhhhhhhhhccceeEEeccccceee--ehhhhhc-ccceEeecccchhHhh-hhh-HhhhcCEeeeehhhhhHhh
Confidence            99988877 466777889999999998874  3447777 8999999999887632 221 1246788899999888764


Q ss_pred             HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc
Q 016686          157 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA  217 (384)
Q Consensus       157 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  217 (384)
                      .  ..+..+.+|..||+++|++......           +.++++|.|+.+.+.+|.+...
T Consensus       367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV-----------~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  367 L--SGLRKLYSLVNLDLSSNQIEELDEV-----------NHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             h--hhhHhhhhheeccccccchhhHHHh-----------cccccccHHHHHhhcCCCcccc
Confidence            3  5567788899999999988754332           3678889999999999988874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.3e-11  Score=103.78  Aligned_cols=196  Identities=22%  Similarity=0.275  Sum_probs=101.3

Q ss_pred             ccEEEeeCCCCCchhHH-HHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC-CChHHH-HhhhCCCCccE
Q 016686           94 LEHLDLSSSMIGDDSVE-MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAI-SYMSMMPSLKF  170 (384)
Q Consensus        94 L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~l~~~~~L~~  170 (384)
                      |+++||+...++..... -+..+ .+|+.|.+.++++...+...++ .-.+|+.|+++.+. ++.... .-+..++.|..
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQC-SKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHH-HhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            55666665555533222 23333 5566666666666555554443 23556666665442 443222 22345556666


Q ss_pred             EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCC--CCcc-cccccccCCCCcEEEcCCC-CCChhhHHhc
Q 016686          171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ--VSDA-TLFPLSTFKELIHLSLRNA-SLTDVSLHQL  246 (384)
Q Consensus       171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~-~~~~l~~~~~L~~L~L~~n-~i~~~~~~~l  246 (384)
                      |+++.|.+.......          ..-.--+++..|+++++.  +... ...-..+|++|.+|+|++| .++......|
T Consensus       265 LNlsWc~l~~~~Vtv----------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~  334 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTV----------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  334 (419)
T ss_pred             cCchHhhccchhhhH----------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence            666665544322110          000112455566665542  1111 1112235667777777665 3444445556


Q ss_pred             cCCCCCCEEEccCCccC-ccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCce
Q 016686          247 SSLSKLTNLSIRDAVLT-NSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE  303 (384)
Q Consensus       247 ~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~  303 (384)
                      ..++.|++|.++.|..- ....-.+...++|.+|++.+|-  ++....-+-..+|++.
T Consensus       335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v--sdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV--SDTTMELLKEMLSHLK  390 (419)
T ss_pred             HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc--CchHHHHHHHhCcccc
Confidence            66777777777766421 1122245566889999998875  3445555566677665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=3.6e-10  Score=106.46  Aligned_cols=175  Identities=29%  Similarity=0.420  Sum_probs=84.5

Q ss_pred             CCCccEEEeecCCCCCcccccCCC--CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCE
Q 016686           69 TSLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI  146 (384)
Q Consensus        69 l~~L~~L~ls~n~l~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  146 (384)
                      .+.++.|++.+|.+..++......  +|+.|++++|.+. ..+..+..+ +.|+.|+++.|++.......  +..+.|+.
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~--~~~~~L~~  190 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL-PNLKNLDLSFNDLSDLPKLL--SNLSNLNN  190 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcc-ccccccccCCchhhhhhhhh--hhhhhhhh
Confidence            345555555555555553222222  5556666655555 233344444 55555555555555332221  13455555


Q ss_pred             EeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCC
Q 016686          147 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  226 (384)
Q Consensus       147 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  226 (384)
                      |++++|.+... |........|+++.+++|++...+.             .+..+..+..+.+.+|++... +..++.++
T Consensus       191 L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~-------------~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~  255 (394)
T COG4886         191 LDLSGNKISDL-PPEIELLSALEELDLSNNSIIELLS-------------SLSNLKNLSGLELSNNKLEDL-PESIGNLS  255 (394)
T ss_pred             eeccCCccccC-chhhhhhhhhhhhhhcCCcceecch-------------hhhhcccccccccCCceeeec-cchhcccc
Confidence            55555555432 2222233345555555553222211             244445555555555554432 33444555


Q ss_pred             CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCc
Q 016686          227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                      .+++|++++|.++....  ++...+++.|++++|.+..
T Consensus       256 ~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         256 NLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccceecccccccccccc--ccccCccCEEeccCccccc
Confidence            55555555555555332  5555555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.9e-11  Score=101.36  Aligned_cols=80  Identities=24%  Similarity=0.268  Sum_probs=33.9

Q ss_pred             CcEEEccCCCch--hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC-CCCCc---ccccCCCCccEE
Q 016686           24 LECLNLSNCTID--SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS-SLSRF---CFLTQMKALEHL   97 (384)
Q Consensus        24 L~~L~ls~n~i~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~---~~~~~~~~L~~L   97 (384)
                      |+++|+++..|+  .+.--+..|.+|+.|.+.++++.+..-. ..++-.+|+.|+++.+ +++..   -.+.+|+.|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            455555555444  1222222445555555555554432111 1224445555555544 23222   133444445555


Q ss_pred             EeeCCCC
Q 016686           98 DLSSSMI  104 (384)
Q Consensus        98 ~L~~n~l  104 (384)
                      +++.|.+
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            5555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=9.8e-12  Score=114.68  Aligned_cols=212  Identities=20%  Similarity=0.254  Sum_probs=152.9

Q ss_pred             EeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC
Q 016686           50 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR  128 (384)
Q Consensus        50 L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  128 (384)
                      |.|++-.+..++....-..+.--...+++.|++..+ ..++.+..|+.+.+++|.+. .+|..++.+ ..|+.++++.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L-~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNL-EALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhh-hHHHHhhhccch
Confidence            334444444443321112334445678888888777 45666777888888888887 577888888 889999999999


Q ss_pred             CCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEE
Q 016686          129 FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN  208 (384)
Q Consensus       129 l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  208 (384)
                      ++......+   .--|+.|.+++|.++ ..|..++....|..||.+.|.+....++             +..+.+|+.|.
T Consensus       133 lS~lp~~lC---~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsq-------------l~~l~slr~l~  195 (722)
T KOG0532|consen  133 LSHLPDGLC---DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQ-------------LGYLTSLRDLN  195 (722)
T ss_pred             hhcCChhhh---cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHH-------------hhhHHHHHHHH
Confidence            875444322   345888888888876 5667777888899999999988877665             77788899999


Q ss_pred             ccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcccccccc---CCCCCCEEEccCC
Q 016686          209 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK---PPRSLKLLDLHGG  284 (384)
Q Consensus       209 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n  284 (384)
                      +..|++... |..+..+ .|..||++.|++.. +|..|..|..|++|-|.+|.++.- |..++   ...-.|+|+..-|
T Consensus       196 vrRn~l~~l-p~El~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  196 VRRNHLEDL-PEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HhhhhhhhC-CHHHhCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence            999988874 5556544 48899999999887 678889999999999999998763 22222   2234566766666

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=2.5e-09  Score=105.79  Aligned_cols=109  Identities=18%  Similarity=0.259  Sum_probs=75.8

Q ss_pred             ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhcc
Q 016686          168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  247 (384)
Q Consensus       168 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  247 (384)
                      ++.|++++|.+.+..|.            .+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..++
T Consensus       420 v~~L~L~~n~L~g~ip~------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPN------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             EEEEECCCCCccccCCH------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence            56677777777766666            566777777777777777776666677777777777777777777777777


Q ss_pred             CCCCCCEEEccCCccCccccccccCC-CCCCEEEccCCcCCC
Q 016686          248 SLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLT  288 (384)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~  288 (384)
                      .+++|+.|++++|.+++..|..+... .++..+++.+|...+
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            77777777777777777666655543 355667777766533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=1.1e-10  Score=110.24  Aligned_cols=240  Identities=24%  Similarity=0.305  Sum_probs=131.0

Q ss_pred             CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686           22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  101 (384)
Q Consensus        22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~  101 (384)
                      ..++.+.+..|.|..+-..+..+.+|+.+++.+|.+..+...  +..+++|++|++++|.|+.+..+..++.|+.|++++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG  149 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhhheecc
Confidence            445555566666665444455667777777777777665542  235677777777777777776666666677777777


Q ss_pred             CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      |.+..  ...+..+ +.|+.+++++|++....... ...+.+++.+++..|.+...  ..+.....+..+++..|.+...
T Consensus       150 N~i~~--~~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  150 NLISD--ISGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             Ccchh--ccCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence            76652  2223334 66677777777665433311 13456677777766665432  2222333344445555555432


Q ss_pred             hhhcccchhhhhhHHhhcCCC--CCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686          182 IQQVGAETDLVLSLTALQNLN--HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  259 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~  259 (384)
                      -+              +....  +|+.+++++|.+.... ..+..+..+..+++..|++...-  .+...+.+..+....
T Consensus       224 ~~--------------l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  224 EG--------------LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLND  286 (414)
T ss_pred             cC--------------cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCc
Confidence            11              11112  2667777777666531 33445566666777666655421  233344455555555


Q ss_pred             CccCccc---cc-cccCCCCCCEEEccCCcC
Q 016686          260 AVLTNSG---LG-SFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       260 n~l~~~~---~~-~~~~~~~L~~L~l~~n~~  286 (384)
                      |.+....   .. .....+.+..+.+..|..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  287 NKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             chhcchhhhhccccccccccccccccccCcc
Confidence            5544211   11 123345666666666654

>PLN03150 hypothetical protein; Provisional

Probab=98.84  E-value=6.9e-09  Score=102.64  Aligned_cols=110  Identities=20%  Similarity=0.243  Sum_probs=99.0

Q ss_pred             CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccc
Q 016686          143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  222 (384)
Q Consensus       143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (384)
                      .++.|+|++|.+.+..|..+..+++|+.|++++|.+.+.+|.            .+..+++|+.|++++|++++.+|..+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~------------~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------SLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh------------HHhCCCCCCEEECCCCCCCCCCchHH
Confidence            378899999999988899999999999999999999988887            68999999999999999999999999


Q ss_pred             ccCCCCcEEEcCCCCCChhhHHhccCC-CCCCEEEccCCccCc
Q 016686          223 STFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVLTN  264 (384)
Q Consensus       223 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~L~~L~l~~n~l~~  264 (384)
                      +.+++|+.|++++|.+++.+|..+... .++..+++.+|....
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            999999999999999999999888753 567889999987443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.83  E-value=9.5e-09  Score=86.98  Aligned_cols=145  Identities=15%  Similarity=0.143  Sum_probs=84.9

Q ss_pred             CCCCCEEeccCCCCChH----HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCc
Q 016686          141 LPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD  216 (384)
Q Consensus       141 l~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  216 (384)
                      -|.|++.....|++..-    ....+.....|+.+.+..|.|....-..      +.. -.+..+.+|+.||+.+|.++.
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~------L~~-~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTM------LAF-LGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHH------HHH-HHHHHhCcceeeeccccchhh
Confidence            45677777777765421    1122333356777777777765331110      000 023456778888888887765


Q ss_pred             cc----ccccccCCCCcEEEcCCCCCChhhHHh----cc--CCCCCCEEEccCCccCcccccc--c-----cCCCCCCEE
Q 016686          217 AT----LFPLSTFKELIHLSLRNASLTDVSLHQ----LS--SLSKLTNLSIRDAVLTNSGLGS--F-----KPPRSLKLL  279 (384)
Q Consensus       217 ~~----~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~--~~~~L~~L~l~~n~l~~~~~~~--~-----~~~~~L~~L  279 (384)
                      ..    ...+..++.|+.|.+..|-++......    |.  ..|+|..|...+|.+.+.....  +     ..++-|..|
T Consensus       229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l  308 (388)
T COG5238         229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL  308 (388)
T ss_pred             hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence            42    334456777888888888776543332    22  3678888888888776643332  1     234677888


Q ss_pred             EccCCcCCCHHHH
Q 016686          280 DLHGGWLLTEDAI  292 (384)
Q Consensus       280 ~l~~n~~~~~~~~  292 (384)
                      .+.+|++.....+
T Consensus       309 e~ngNr~~E~~d~  321 (388)
T COG5238         309 ERNGNRIKELADF  321 (388)
T ss_pred             HHccCcchhHHHH
Confidence            8888888443333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.9e-09  Score=71.43  Aligned_cols=57  Identities=30%  Similarity=0.424  Sum_probs=22.0

Q ss_pred             CcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCC
Q 016686          228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  284 (384)
Q Consensus       228 L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  284 (384)
                      |++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333333333333333333333334444444444333333333333344444444433

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4e-09  Score=70.68  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=57.5

Q ss_pred             CCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCcc
Q 016686          202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  262 (384)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  262 (384)
                      ++|++|++++|+++...+..+.++++|++|++++|.++...+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999998888999999999999999999999899999999999999999975

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.72  E-value=5.9e-09  Score=93.23  Aligned_cols=268  Identities=20%  Similarity=0.201  Sum_probs=174.4

Q ss_pred             CCcEEEccCCCch---hHHhhCcCCCCccEEeccCCC-CCchhHHhhh-cCCCCccEEEeecC-CCCCc---ccccCCCC
Q 016686           23 SLECLNLSNCTID---SILEGNENKAPLAKISLAGTT-FINEREAFLY-IETSLLSFLDVSNS-SLSRF---CFLTQMKA   93 (384)
Q Consensus        23 ~L~~L~ls~n~i~---~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~-~~l~~L~~L~ls~n-~l~~~---~~~~~~~~   93 (384)
                      .|+.|.+.++.-.   .+-....++|++++|.+.++. +++..- ..+ ..+++|+++++..| .++..   .-...+++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            5788888888533   233333488999999998875 333211 112 35789999999885 34444   24567889


Q ss_pred             ccEEEeeCCC-CCchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhhh-CCCCcc
Q 016686           94 LEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMS-MMPSLK  169 (384)
Q Consensus        94 L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~-~~~~L~  169 (384)
                      |++++++.|. +++.....+.+-+..++.+.+.+|. ..........+.+..+..+++..+ .+++.....+. .+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            9999999884 5544444443332567777666663 444444444556677777776544 46665443333 567899


Q ss_pred             EEEeeCCcCCcchhhcccchhhhhhHHhh-cCCCCCCEEEccCC-CCCcccccccc-cCCCCcEEEcCCCCCC-hh-hHH
Q 016686          170 FIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLERLNLEQT-QVSDATLFPLS-TFKELIHLSLRNASLT-DV-SLH  244 (384)
Q Consensus       170 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~l~-~~~~L~~L~L~~n~i~-~~-~~~  244 (384)
                      .++.+++...+..+-+           .+ .++.+|+.+-++.+ ++++.....++ +++.|+.+++.++... +. ...
T Consensus       298 ~l~~s~~t~~~d~~l~-----------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLW-----------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhcccCCCCCchHHHH-----------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence            9999887643322211           23 46789999999998 46665555555 6889999999988543 22 333


Q ss_pred             hccCCCCCCEEEccCCc-cCccccccccC----CCCCCEEEccCCcCCCHHHHHHHHHhCCCce
Q 016686          245 QLSSLSKLTNLSIRDAV-LTNSGLGSFKP----PRSLKLLDLHGGWLLTEDAILQFCKMHPRIE  303 (384)
Q Consensus       245 ~l~~~~~L~~L~l~~n~-l~~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~  303 (384)
                      .-.+++.|+.+.++++. +++.+...+..    +..+..+.+++++.+++..... ...+++++
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Le  429 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLE  429 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH-HhhCcccc
Confidence            33578999999999885 66665544443    4789999999999977655443 34455555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=5.5e-09  Score=89.51  Aligned_cols=208  Identities=16%  Similarity=0.197  Sum_probs=115.8

Q ss_pred             CCCccEEEeecCCCCCc----ccccCCCCccEEEeeCCCCCchhHHHH-HhccCCccEEEccCCCCCchHHHHHHhCCCC
Q 016686           69 TSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRNLNLSNTRFSSAGVGILAGHLPN  143 (384)
Q Consensus        69 l~~L~~L~ls~n~l~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~  143 (384)
                      ++.+++++|.+|.|+++    ..+.++|.|+.|+++.|++...+ +.+ ... .+|+.|-|.+..+.......+...+|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccc-cceEEEEEcCCCCChhhhhhhhhcchh
Confidence            45566666666666655    24456666666666666665322 122 233 566677776666665555555556666


Q ss_pred             CCEEeccCCCCChH--HHHhhh-CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc-c
Q 016686          144 LEILSLSGTQIDDY--AISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-L  219 (384)
Q Consensus       144 L~~L~l~~n~i~~~--~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~  219 (384)
                      +++|.++.|.....  ...... ..+.+.++....|........          ...-+.++++..+.+..|.+.... .
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~----------~~l~r~Fpnv~sv~v~e~PlK~~s~e  217 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK----------NKLSRIFPNVNSVFVCEGPLKTESSE  217 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH----------HhHHhhcccchheeeecCcccchhhc
Confidence            77776666632100  001111 122344454444432211100          001234577888888887665432 2


Q ss_pred             cccccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCccccc------cccCCCCCCEEEccCCcCCCHH
Q 016686          220 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGLG------SFKPPRSLKLLDLHGGWLLTED  290 (384)
Q Consensus       220 ~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~~~~~~  290 (384)
                      .....++.+-.|+|+.++|.+. ..+++..+++|..|.++++++.+....      .++.+++++.|+=  ..+.+.+
T Consensus       218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG--skIss~e  293 (418)
T KOG2982|consen  218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG--SKISSRE  293 (418)
T ss_pred             ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC--cccchhh
Confidence            2333456667888888888663 446788899999999999987764221      2445567776653  3554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.64  E-value=3.7e-08  Score=100.00  Aligned_cols=151  Identities=23%  Similarity=0.293  Sum_probs=102.6

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCC--CCchhHHhhhcCCCCccEEEeecCC-CCCc-ccccCCCCcc
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT--FINEREAFLYIETSLLSFLDVSNSS-LSRF-CFLTQMKALE   95 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~-~~~~~~~~L~   95 (384)
                      +....+...+-+|.+..++... .++.|++|-+..|.  +..++..+ |..+|.|++||+++|. +... ..++.+-+|+
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~f-f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEF-FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHH-HhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3456778888888877665433 55678888888875  56666553 6688888899988763 4444 4677788888


Q ss_pred             EEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC--CChHHHHhhhCCCCccEEEe
Q 016686           96 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ--IDDYAISYMSMMPSLKFIDI  173 (384)
Q Consensus        96 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~l~~~~~L~~L~l  173 (384)
                      +|+++++.+. ..|..+..+ ..|.+|++..+......+. +...+++|++|.+....  .+......+..+..|+.+..
T Consensus       599 yL~L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccccCCCcc-ccchHHHHH-Hhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            8888888888 678888888 8888888887654323232 22447888888875443  33334445556666666655


Q ss_pred             eC
Q 016686          174 SN  175 (384)
Q Consensus       174 ~~  175 (384)
                      ..
T Consensus       676 ~~  677 (889)
T KOG4658|consen  676 TI  677 (889)
T ss_pred             ec
Confidence            43

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.61  E-value=2.5e-07  Score=78.55  Aligned_cols=43  Identities=26%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             cCCCCcEEEcCCCCCChh----hHHhccCCCCCCEEEccCCccCccc
Q 016686          224 TFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSG  266 (384)
Q Consensus       224 ~~~~L~~L~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~  266 (384)
                      .+.+|+.|++..|-++..    ...+++.++.|+.|.+..|.++..+
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G  258 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG  258 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence            445555555555544432    2223344455555555555544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=2.7e-08  Score=85.40  Aligned_cols=206  Identities=17%  Similarity=0.168  Sum_probs=112.8

Q ss_pred             CCcEEEccCCCchh--HHhhCc-CCCCccEEeccCCCCCchhHHhh-hcCCCCccEEEeecCCCCCc-ccc-cCCCCccE
Q 016686           23 SLECLNLSNCTIDS--ILEGNE-NKAPLAKISLAGTTFINEREAFL-YIETSLLSFLDVSNSSLSRF-CFL-TQMKALEH   96 (384)
Q Consensus        23 ~L~~L~ls~n~i~~--~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~-~~~-~~~~~L~~   96 (384)
                      -++.+.+.++.|..  ....++ .++.++++|+.+|.++.....+. +.++|.|+.|+++.|++... ..+ ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44567777777763  333444 77888899999998887554332 45789999999998887654 333 35567888


Q ss_pred             EEeeCCCCCchhHH-HHHhccCCccEEEccCCCCCchHHH--HHHhCCCCCCEEeccCCCCCh--HHHHhhhCCCCccEE
Q 016686           97 LDLSSSMIGDDSVE-MVACVGANLRNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFI  171 (384)
Q Consensus        97 L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L  171 (384)
                      |-|.+..+.=.... .+..+ |.+++|+++.|........  ....--+.+++|....|....  .....-..++++..+
T Consensus       126 lVLNgT~L~w~~~~s~l~~l-P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDL-PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcc-hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            88888776533333 33344 7888888888853221110  000011245555554443220  001111234566666


Q ss_pred             EeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc-cccccccCCCCcEEEcCCCCCCh
Q 016686          172 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTD  240 (384)
Q Consensus       172 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~i~~  240 (384)
                      -+..|.+......-           .+..++.+-.|+++.+++.+. ..+++.+++.|+.|.++++.+.+
T Consensus       205 ~v~e~PlK~~s~ek-----------~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  205 FVCEGPLKTESSEK-----------GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eeecCcccchhhcc-----------cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            66666554332211           233344455555555555442 12344455566666666555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=8.1e-10  Score=105.02  Aligned_cols=86  Identities=28%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc-cccccCCCCC
Q 016686          198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSL  276 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L  276 (384)
                      +..++.|++||++.|.+....--....|. |+.|.+.+|.++...  .+.++.+|+.|++++|-+.+.. ...+..+..|
T Consensus       205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L  281 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL  281 (1096)
T ss_pred             HHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence            34444444444444444432111112222 444444444444321  2334444444555544443321 1122223444


Q ss_pred             CEEEccCCcC
Q 016686          277 KLLDLHGGWL  286 (384)
Q Consensus       277 ~~L~l~~n~~  286 (384)
                      +.|+|.+|++
T Consensus       282 ~~L~LeGNPl  291 (1096)
T KOG1859|consen  282 IVLWLEGNPL  291 (1096)
T ss_pred             HHHhhcCCcc
Confidence            4455555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=2.9e-09  Score=101.37  Aligned_cols=176  Identities=24%  Similarity=0.287  Sum_probs=117.9

Q ss_pred             CCCCccEEEeecCCCCCcccccCCC-CccEEEeeCCCCCchhHHHHHhcc---------CCccEEEccCCCCCchHHHHH
Q 016686           68 ETSLLSFLDVSNSSLSRFCFLTQMK-ALEHLDLSSSMIGDDSVEMVACVG---------ANLRNLNLSNTRFSSAGVGIL  137 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~---------~~L~~L~L~~n~l~~~~~~~~  137 (384)
                      .+..|++|.+..+.+.....+..+. .|++| |.+|.++ ..-..+..+.         -.|...+.+.|.+.. .... 
T Consensus       107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-mD~S-  182 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLVL-MDES-  182 (1096)
T ss_pred             cccceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHHh-HHHH-
Confidence            5567788888887775543222221 23333 2222221 1111111110         256667777777652 2222 


Q ss_pred             HhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc
Q 016686          138 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA  217 (384)
Q Consensus       138 ~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  217 (384)
                      ..-++.+++|+|+.|+++..  +.+..++.|++||+++|.+..+...            ....+. |+.|.+++|.++..
T Consensus       183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l------------~~~gc~-L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQL------------SMVGCK-LQLLNLRNNALTTL  247 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcccccc------------chhhhh-heeeeecccHHHhh
Confidence            24578999999999999866  5889999999999999998865433            334444 99999999988864


Q ss_pred             cccccccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCc
Q 016686          218 TLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       218 ~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                        ..+.++.+|+.|++++|-+.+. -...++.+..|+.|.|.||++--
T Consensus       248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence              4567899999999999987653 23345677899999999999854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.52  E-value=7.5e-08  Score=97.76  Aligned_cols=142  Identities=20%  Similarity=0.203  Sum_probs=93.6

Q ss_pred             CCcEEEccCCCCCCCC---CCCCCcEEEccCCC--chhHHhhCc-CCCCccEEeccCC-CCCchhHHhhhcCCCCccEEE
Q 016686            4 RLSFLNLAWTGVTKLP---NISSLECLNLSNCT--IDSILEGNE-NKAPLAKISLAGT-TFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~--i~~~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      ..+.+.+-+|.+..++   .+++|++|-+..|.  +..++..++ .+|.|+.||+++| .+..+|....  .+-+|++|+
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhccc
Confidence            4455666666655443   56678888888875  566666655 7888888888876 4455665543  778888888


Q ss_pred             eecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC--CCchHHHHHHhCCCCCCEEec
Q 016686           77 VSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR--FSSAGVGILAGHLPNLEILSL  149 (384)
Q Consensus        77 ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l  149 (384)
                      ++.+.+... ..+.+++.|.+|++..+.-....+.....+ ++|+.|.+..-.  .+....... ..+.+|+.+..
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~  675 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSI  675 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhc-ccccEEEeeccccccchhhHHhh-hcccchhhhee
Confidence            888888776 477788888888888776544445555556 788888776654  222223332 34555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.32  E-value=1.4e-06  Score=86.40  Aligned_cols=149  Identities=21%  Similarity=0.267  Sum_probs=88.5

Q ss_pred             CCcEEEccCCCch--hHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686           23 SLECLNLSNCTID--SILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL   99 (384)
Q Consensus        23 ~L~~L~ls~n~i~--~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L   99 (384)
                      +|++|++++...-  +.|..++ -+|.|+.|.+++-.+......-.+.++|+|..||+|+++++...+++++++|+.|.+
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m  202 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM  202 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence            6777777775532  4566666 677777777777666543322234567777777777777777777777777777776


Q ss_pred             eCCCCCc-hhHHHHHhccCCccEEEccCCCCCch--HHH---HHHhCCCCCCEEeccCCCCChHHHHhhh-CCCCccEEE
Q 016686          100 SSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSA--GVG---ILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFID  172 (384)
Q Consensus       100 ~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~  172 (384)
                      .+=.+.. .....+..+ .+|+.||++.......  .+.   +....+|+|+.||.+++.+++...+.+. ..++|+.+.
T Consensus       203 rnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  203 RNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             cCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            6555543 233445555 7777777777553221  111   1112367777777777766654443332 334444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=9.8e-07  Score=54.26  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchh
Q 016686           23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER   61 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~   61 (384)
                      +|++|++++|+|+.+|..+.++++|++|++++|.++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            566666666666666655556666666666666665443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.29  E-value=1.1e-06  Score=71.55  Aligned_cols=120  Identities=15%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             cEEEccCCCCCCCCCC----CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            6 SFLNLAWTGVTKLPNI----SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         6 ~~L~l~~n~i~~l~~~----~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      +++++.+..+..+.++    .+...+|+++|.+..+ ..+..++.|.+|.+.+|.|+.+.+.+. .-+|+|+.|.+.+|.
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchh-hhccccceEEecCcc
Confidence            4566666666655543    3566788888887754 345577888888888888887766542 235778888888887


Q ss_pred             CCCc---ccccCCCCccEEEeeCCCCCchhH---HHHHhccCCccEEEccCCC
Q 016686           82 LSRF---CFLTQMKALEHLDLSSSMIGDDSV---EMVACVGANLRNLNLSNTR  128 (384)
Q Consensus        82 l~~~---~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~L~~n~  128 (384)
                      |..+   ..+..|++|++|.+-+|+++..--   ..+..+ |+|+.||+.+-.
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl-p~l~~LDF~kVt  151 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL-PSLRTLDFQKVT  151 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec-CcceEeehhhhh
Confidence            7655   567778888888888887653211   122334 788888876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.20  E-value=3.3e-06  Score=83.84  Aligned_cols=152  Identities=26%  Similarity=0.409  Sum_probs=106.6

Q ss_pred             CCccEEEeeCCCC-CchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccE
Q 016686           92 KALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF  170 (384)
Q Consensus        92 ~~L~~L~L~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  170 (384)
                      .+|++|++++... ...++..++.++|+|+.|.+++-.+........+.++|+|..||+++++++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5688999988654 44577778877799999999887776655556667899999999999988765  56778888888


Q ss_pred             EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc--cc----ccccCCCCcEEEcCCCCCChhhHH
Q 016686          171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT--LF----PLSTFKELIHLSLRNASLTDVSLH  244 (384)
Q Consensus       171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~----~l~~~~~L~~L~L~~n~i~~~~~~  244 (384)
                      |.+.+=.+.....           +..+-.+++|+.||+|........  ..    .-..+|+|+.||.++..+.+...+
T Consensus       200 L~mrnLe~e~~~~-----------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  200 LSMRNLEFESYQD-----------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             HhccCCCCCchhh-----------HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            8887766654211           124667889999999887544422  11    112578889999888888766544


Q ss_pred             hc-cCCCCCCEEE
Q 016686          245 QL-SSLSKLTNLS  256 (384)
Q Consensus       245 ~l-~~~~~L~~L~  256 (384)
                      .+ ..-|+|+.+.
T Consensus       269 ~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  269 ELLNSHPNLQQIA  281 (699)
T ss_pred             HHHHhCccHhhhh
Confidence            43 2344454444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=5.2e-06  Score=51.03  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccc
Q 016686           45 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL   88 (384)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~   88 (384)
                      ++|++|++++|.++.+++.  +.++++|+.|++++|++++++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~--l~~l~~L~~L~l~~N~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE--LSNLPNLETLNLSNNPISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH--GTTCTTSSEEEETSSCCSBEGGG
T ss_pred             CcceEEEccCCCCcccCch--HhCCCCCCEEEecCCCCCCCcCC
Confidence            4688888888888887764  44888888888888888776544

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=2.6e-07  Score=70.43  Aligned_cols=105  Identities=25%  Similarity=0.313  Sum_probs=62.3

Q ss_pred             CCcEEEccCCCchhHHhhC---cCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEE
Q 016686           23 SLECLNLSNCTIDSILEGN---ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLD   98 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~   98 (384)
                      .+-.++++.|.+-.+++..   ....+|+.+++++|.+..+++.+. .+.|.++.|++++|.|+++ ..+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft-~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT-IKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-hccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            3455667777655444333   255666667777777776666542 3445666666666666666 2455666666666


Q ss_pred             eeCCCCCchhHHHHHhccCCccEEEccCCCCC
Q 016686           99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFS  130 (384)
Q Consensus        99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  130 (384)
                      ++.|.+. ..|..+..+ .++..|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L-~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPL-IKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHH-HhHHHhcCCCCccc
Confidence            6666665 345555555 56666666665544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.05  E-value=4.4e-06  Score=68.07  Aligned_cols=106  Identities=22%  Similarity=0.316  Sum_probs=68.6

Q ss_pred             CCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEec
Q 016686           70 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL  149 (384)
Q Consensus        70 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  149 (384)
                      .....+++++|.+...+.+.+++.|..|.++.|.|+...|.-...+ ++|..|.+.+|++.....-.-...||+|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4566788888888777778888888888888888876555433334 788888888887754322111235778888887


Q ss_pred             cCCCCChHHH---HhhhCCCCccEEEeeCC
Q 016686          150 SGTQIDDYAI---SYMSMMPSLKFIDISNT  176 (384)
Q Consensus       150 ~~n~i~~~~~---~~l~~~~~L~~L~l~~n  176 (384)
                      -+|+++...-   ..+..+++|+.||+++-
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7777653211   12335556666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=7.4e-07  Score=67.97  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CcEEEccCCCCCCCC-------CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            5 LSFLNLAWTGVTKLP-------NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         5 L~~L~l~~n~i~~l~-------~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +..+|++++.+-.++       ...+|+.+++++|.+..+|..+. +++.++.|++++|.++.+|..+  ..+|.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~--Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL--AAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH--hhhHHhhhcc
Confidence            445778888766443       45578889999999999999888 7889999999999999999874  4999999999


Q ss_pred             eecCCCCCc-ccccCCCCccEEEeeCCCCCch
Q 016686           77 VSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD  107 (384)
Q Consensus        77 ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~  107 (384)
                      ++.|.+... ..+..+.++-.|+..+|.+...
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccC
Confidence            999999877 3455588888888888877643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=4.1e-07  Score=77.55  Aligned_cols=76  Identities=20%  Similarity=0.139  Sum_probs=33.5

Q ss_pred             CcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            5 LSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         5 L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      .+.|++.++++++|+   .|+.|+.|.||-|+|+.+. .+..|++|++|+|..|.|..+.+-..+.++|+|+.|.|..|.
T Consensus        21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            344444444444432   4444444444444444331 122444444444444444444433333344444444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.90  E-value=1.5e-05  Score=77.04  Aligned_cols=109  Identities=28%  Similarity=0.356  Sum_probs=63.1

Q ss_pred             CCCCccEEeccCC-CCCc--hhHHhhhcCCCCccEEEeecC-C-CCCc-----ccccCCCCccEEEeeCCC-CCchhHHH
Q 016686           43 NKAPLAKISLAGT-TFIN--EREAFLYIETSLLSFLDVSNS-S-LSRF-----CFLTQMKALEHLDLSSSM-IGDDSVEM  111 (384)
Q Consensus        43 ~~~~L~~L~l~~n-~~~~--~~~~~~~~~l~~L~~L~ls~n-~-l~~~-----~~~~~~~~L~~L~L~~n~-l~~~~~~~  111 (384)
                      .++.|+.+.+.++ .++.  ..+.  ...++.|+.|+++.+ . +...     .....+++|+.++++++. +++.....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDAL--ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHH--HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            4566777777665 3333  2222  235677777777652 1 1111     233445667777777666 56555555


Q ss_pred             HHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCCC
Q 016686          112 VACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQ  153 (384)
Q Consensus       112 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~  153 (384)
                      ++..+++|+.|.+..+. ++......+...++.|++|+++++.
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            55533677777766665 5666666666666777777776665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=6.8e-05  Score=69.10  Aligned_cols=53  Identities=17%  Similarity=0.225  Sum_probs=25.0

Q ss_pred             CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCC-CCCchhHHhhhcCCCCccEEEeecC
Q 016686           21 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT-TFINEREAFLYIETSLLSFLDVSNS   80 (384)
Q Consensus        21 ~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~ls~n   80 (384)
                      ++++++|++++|.++.+| .+  .++|++|.++++ .++.++..+    .++|+.|.+++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh----hhhhhheEccCc
Confidence            455555555555555554 11  124555555543 333333221    135555665555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.62  E-value=9.6e-05  Score=71.47  Aligned_cols=112  Identities=28%  Similarity=0.402  Sum_probs=72.6

Q ss_pred             CCCCccEEEeecC-CCCC--c-ccccCCCCccEEEeeCC-CC-C--chhHHHHHhccCCccEEEccCCC-CCchHHHHHH
Q 016686           68 ETSLLSFLDVSNS-SLSR--F-CFLTQMKALEHLDLSSS-MI-G--DDSVEMVACVGANLRNLNLSNTR-FSSAGVGILA  138 (384)
Q Consensus        68 ~l~~L~~L~ls~n-~l~~--~-~~~~~~~~L~~L~L~~n-~l-~--~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~  138 (384)
                      .++.|+.+.+..+ .+..  . +....++.|+.|+++++ .. .  +.....+...+.+|+.++++.+. ++......+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4688888888777 3443  2 45667788888888763 21 1  11112233333778888888877 6766676666


Q ss_pred             hCCCCCCEEeccCCC-CChHHHHhhh-CCCCccEEEeeCCcCC
Q 016686          139 GHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFIDISNTDIK  179 (384)
Q Consensus       139 ~~l~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~l~~n~l~  179 (384)
                      ..+++|++|.+..+. +++.....+. .++.|++|+++++...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            667888888877676 5655544443 5677888888877643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=2.6e-05  Score=66.26  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=69.1

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCC--CCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCc
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT--TFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKAL   94 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L   94 (384)
                      ....|+.+++.+..++.+ ..+..+++|++|.++.|  .++.--.. ....+|+|++|.++.|+|..+   ..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            455778888888777654 34457889999999988  44332111 123669999999999987755   456677778


Q ss_pred             cEEEeeCCCCCch--hHHHHHhccCCccEEEccC
Q 016686           95 EHLDLSSSMIGDD--SVEMVACVGANLRNLNLSN  126 (384)
Q Consensus        95 ~~L~L~~n~l~~~--~~~~~~~~~~~L~~L~L~~  126 (384)
                      ..|++..|..+..  --..+..++++|++++-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            8889988866531  1122233337787776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=1.3e-05  Score=68.55  Aligned_cols=102  Identities=22%  Similarity=0.240  Sum_probs=79.0

Q ss_pred             CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCch-hHHHHHhccCCccE
Q 016686           43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRN  121 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~  121 (384)
                      .+.+.++|+..+|.++++.-.   .+|+.|++|.|+.|.|+....+..|+.|++|.|..|.|.+. ....+..+ |+|+.
T Consensus        17 dl~~vkKLNcwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhh
Confidence            356778899999999887643   38899999999999999998899999999999999988753 34567777 89999


Q ss_pred             EEccCCCCCchH----HHHHHhCCCCCCEEe
Q 016686          122 LNLSNTRFSSAG----VGILAGHLPNLEILS  148 (384)
Q Consensus       122 L~L~~n~l~~~~----~~~~~~~l~~L~~L~  148 (384)
                      |.|..|.=.+..    -..+...+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999888643322    234446688888885

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.28  E-value=0.00053  Score=53.35  Aligned_cols=59  Identities=17%  Similarity=0.308  Sum_probs=20.1

Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEcc
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR  258 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~  258 (384)
                      ++..++.++.+.+.. .+.......+..+++++.+.+..+ ++......|.++ .++.+.+.
T Consensus        53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            344444445554433 222222233334444444444432 333333334443 44444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.17  E-value=0.0024  Score=59.06  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCC-CCCchHHHHHHhCCCCCCE
Q 016686           68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEI  146 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~  146 (384)
                      .+.+++.|++++|.+..++.+  ..+|+.|.+++|.--...|+.+.   ++|+.|.+++| .+. ..       ...|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sL-------P~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GL-------PESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-cc-------ccccce
Confidence            468889999999887777632  34688999887644334554332   67888888887 443 11       246777


Q ss_pred             EeccCCCCChHHHHhhhCC-CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccC
Q 016686          147 LSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF  225 (384)
Q Consensus       147 L~l~~n~i~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  225 (384)
                      |++..+....     +..+ ++|+.|.+.+++.......            .-.-.++|+.|++++|.... .|..+.  
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~l------------p~~LPsSLk~L~Is~c~~i~-LP~~LP--  176 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARI------------DNLISPSLKTLSLTGCSNII-LPEKLP--  176 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheecccccccccccc------------ccccCCcccEEEecCCCccc-Cccccc--
Confidence            7776655432     1222 3567777654321100000            00012568888888876543 232222  


Q ss_pred             CCCcEEEcCCC
Q 016686          226 KELIHLSLRNA  236 (384)
Q Consensus       226 ~~L~~L~L~~n  236 (384)
                      .+|+.|.++.+
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            57788887665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00014  Score=61.91  Aligned_cols=84  Identities=24%  Similarity=0.290  Sum_probs=38.3

Q ss_pred             CCccEEEeecCCCCCcccccCCCCccEEEeeCC--CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686           70 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        70 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  147 (384)
                      ..|+.|++.+..++....+..+++|+.|.++.|  .+.+...--...+ |+|+++++++|.+.....-.-...+.+|..|
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccchhhhhcchhhh
Confidence            444445555555555545555555555555555  3332222222233 5555555555554321100001234455555


Q ss_pred             eccCCCC
Q 016686          148 SLSGTQI  154 (384)
Q Consensus       148 ~l~~n~i  154 (384)
                      ++..|..
T Consensus       122 dl~n~~~  128 (260)
T KOG2739|consen  122 DLFNCSV  128 (260)
T ss_pred             hcccCCc
Confidence            5555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.76  E-value=0.0045  Score=48.04  Aligned_cols=107  Identities=22%  Similarity=0.315  Sum_probs=62.2

Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..|..+++|+.+.+.. .+......            +|..++.++.+.+..+ +.......+..+++++.+.+.. .+.
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~------------~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~   70 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGEN------------AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK   70 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TT------------TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChh------------hccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence            3466777888888764 44444444            6778878888888775 6666556677887888888865 555


Q ss_pred             hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccC
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG  283 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  283 (384)
                      ......|..+++++.+.+..+ +.......|..+ .|+.+.+.+
T Consensus        71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555557777888888888765 655555667776 888888765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.71  E-value=9.5e-05  Score=70.48  Aligned_cols=186  Identities=24%  Similarity=0.276  Sum_probs=87.2

Q ss_pred             ccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHH---H
Q 016686           72 LSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGIL---A  138 (384)
Q Consensus        72 L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~---~  138 (384)
                      +..+.+.+|.+...      ..+...+.|+.|++++|.+.+.....+....    +.++.|.+..|.++......+   .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55666666665443      2455556666666666666644443333222    234455555555544322211   1


Q ss_pred             hCCCCCCEEeccCCCCChH----HHHhhh----CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC-CCEEEc
Q 016686          139 GHLPNLEILSLSGTQIDDY----AISYMS----MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNL  209 (384)
Q Consensus       139 ~~l~~L~~L~l~~n~i~~~----~~~~l~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l  209 (384)
                      .....++.++++.|.+...    .+..+.    ...++++|.+++|.++.....        ..-.++...+. +..+++
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------LLDEVLASGESLLRELDL  240 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------HHHHHHhccchhhHHHHH
Confidence            2245566666666654311    112222    244556666666655532111        00002333333 444666


Q ss_pred             cCCCCCccccc----ccccC-CCCcEEEcCCCCCChhh----HHhccCCCCCCEEEccCCccCcc
Q 016686          210 EQTQVSDATLF----PLSTF-KELIHLSLRNASLTDVS----LHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       210 ~~n~l~~~~~~----~l~~~-~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      ..|.+.+....    .+..+ ..++++++..|.|++..    ...+..++.++.+.+++|.+.+.
T Consensus       241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            66655543211    22223 34556666666555432    23334455566666666655554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.59  E-value=0.00014  Score=69.32  Aligned_cols=62  Identities=27%  Similarity=0.440  Sum_probs=29.1

Q ss_pred             ccEEEccCCCCCchHHHHHH---hCCCCCCEEeccCCCCChHHHHhhh----CC-CCccEEEeeCCcCCc
Q 016686          119 LRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYMS----MM-PSLKFIDISNTDIKG  180 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~l~----~~-~~L~~L~l~~n~l~~  180 (384)
                      +..+.|.+|.+.......+.   ...+.|..|++++|.+.+.....++    .. ..++.|++..|.++.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~  158 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS  158 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc
Confidence            44555666655443322222   2345566666666666544333322    22 334555555555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.0052  Score=50.57  Aligned_cols=83  Identities=25%  Similarity=0.390  Sum_probs=63.6

Q ss_pred             CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCCC-CChHHHHhhhCCCCccE
Q 016686           93 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMSMMPSLKF  170 (384)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~  170 (384)
                      .++.++-+++.|.....+.+..+ +.++.|.+.+|. +.......+.+-.++|+.|++++|. |++.....+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            36778888888888888888888 888888888875 5555555555556789999998775 78777788888888888


Q ss_pred             EEeeCC
Q 016686          171 IDISNT  176 (384)
Q Consensus       171 L~l~~n  176 (384)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            877653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.72  E-value=0.0039  Score=31.76  Aligned_cols=17  Identities=41%  Similarity=0.509  Sum_probs=9.9

Q ss_pred             CcEEEccCCCchhHHhh
Q 016686           24 LECLNLSNCTIDSILEG   40 (384)
Q Consensus        24 L~~L~ls~n~i~~~~~~   40 (384)
                      |++|++++|.++.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            55566666665555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.67  E-value=0.021  Score=26.97  Aligned_cols=14  Identities=29%  Similarity=0.323  Sum_probs=5.6

Q ss_pred             CCcEEEccCCCCCC
Q 016686            4 RLSFLNLAWTGVTK   17 (384)
Q Consensus         4 ~L~~L~l~~n~i~~   17 (384)
                      +|+.|++++|+++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            45555555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.56  E-value=0.057  Score=44.62  Aligned_cols=83  Identities=22%  Similarity=0.310  Sum_probs=45.5

Q ss_pred             CCCEEEccCCCCCcccccccccCCCCcEEEcCCCC-CChhhHHhcc-CCCCCCEEEccCCc-cCccccccccCCCCCCEE
Q 016686          203 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLS-SLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLL  279 (384)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L  279 (384)
                      .++.++.++..+..+....+..++.++.|.+.+|. +.+...+.++ -.++|+.|++++|. |++.+...+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35566666666666655666666666666666653 3332222222 23556666666553 555555555555666666


Q ss_pred             EccCCc
Q 016686          280 DLHGGW  285 (384)
Q Consensus       280 ~l~~n~  285 (384)
                      .+.+=.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.86  E-value=0.07  Score=27.03  Aligned_cols=12  Identities=33%  Similarity=0.382  Sum_probs=7.3

Q ss_pred             CCEEEccCCccC
Q 016686          252 LTNLSIRDAVLT  263 (384)
Q Consensus       252 L~~L~l~~n~l~  263 (384)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            556666666665

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.79  E-value=0.068  Score=28.31  Aligned_cols=17  Identities=35%  Similarity=0.436  Sum_probs=7.2

Q ss_pred             CCcEEEccCCCchhHHh
Q 016686           23 SLECLNLSNCTIDSILE   39 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~   39 (384)
                      +|++|++++|.|..+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.79  E-value=0.068  Score=28.31  Aligned_cols=17  Identities=35%  Similarity=0.436  Sum_probs=7.2

Q ss_pred             CCcEEEccCCCchhHHh
Q 016686           23 SLECLNLSNCTIDSILE   39 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~   39 (384)
                      +|++|++++|.|..+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.71  E-value=0.092  Score=27.19  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=9.3

Q ss_pred             CCccEEEeeCCCCCchhHHHH
Q 016686           92 KALEHLDLSSSMIGDDSVEMV  112 (384)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~  112 (384)
                      ++|++|++++|++++..+.++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            445555555555554444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.19  E-value=0.27  Score=25.39  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=10.5

Q ss_pred             CCCCEEEccCCcCCCHHHHHHH
Q 016686          274 RSLKLLDLHGGWLLTEDAILQF  295 (384)
Q Consensus       274 ~~L~~L~l~~n~~~~~~~~~~~  295 (384)
                      ++|++|+|++|++ +++++..+
T Consensus         2 ~~L~~L~l~~n~i-~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQI-TDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBE-HHHHHHHH
T ss_pred             CCCCEEEccCCcC-CHHHHHHh
Confidence            4566666666664 55554443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.87  E-value=0.24  Score=26.14  Aligned_cols=18  Identities=33%  Similarity=0.593  Sum_probs=16.3

Q ss_pred             CCCCcEEEccCCCCCCCC
Q 016686            2 FPRLSFLNLAWTGVTKLP   19 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~   19 (384)
                      +++|++|++++|.++.+|
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            578999999999999886

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.87  E-value=0.24  Score=26.14  Aligned_cols=18  Identities=33%  Similarity=0.593  Sum_probs=16.3

Q ss_pred             CCCCcEEEccCCCCCCCC
Q 016686            2 FPRLSFLNLAWTGVTKLP   19 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~   19 (384)
                      +++|++|++++|.++.+|
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            578999999999999886

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.58  E-value=0.26  Score=26.18  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=13.5

Q ss_pred             CCCCcEEEccCCCCCCCCCCC
Q 016686            2 FPRLSFLNLAWTGVTKLPNIS   22 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~~~~   22 (384)
                      +++|+.|+++.|.|+.+.++.
T Consensus         1 L~~L~~L~L~~NkI~~IEnL~   21 (26)
T smart00365        1 LTNLEELDLSQNKIKKIENLD   21 (26)
T ss_pred             CCccCEEECCCCccceecCcc
Confidence            356777777777776665443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.89  E-value=0.5  Score=24.95  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=18.7

Q ss_pred             CCCCCEEEccCCcCCCHHHHHHHH
Q 016686          273 PRSLKLLDLHGGWLLTEDAILQFC  296 (384)
Q Consensus       273 ~~~L~~L~l~~n~~~~~~~~~~~~  296 (384)
                      ++.|++|++++|.-+++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            367888899998877888776654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.64  E-value=0.71  Score=24.92  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=16.1

Q ss_pred             CCCCEEEccCCcCCCHHHHHHHHHh
Q 016686          274 RSLKLLDLHGGWLLTEDAILQFCKM  298 (384)
Q Consensus       274 ~~L~~L~l~~n~~~~~~~~~~~~~~  298 (384)
                      ++|++|+|++|.+ +.++...++..
T Consensus         2 ~~L~~LdL~~N~i-~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKL-GDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCC-CHHHHHHHHHH
Confidence            4677777777776 66666666554

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.18  E-value=0.9  Score=43.48  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CCCCCcEEEccCCCchh---HHhhCcCCCCccEEeccCC--CCCchhHHhhhcCCCCccEEEeecCCCC
Q 016686           20 NISSLECLNLSNCTIDS---ILEGNENKAPLAKISLAGT--TFINEREAFLYIETSLLSFLDVSNSSLS   83 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~---~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~L~ls~n~l~   83 (384)
                      +.+.+..+++++|++..   +..-....|+|+.|+|++|  .+....+.-. .+...|++|.+.+|++.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCccc
Confidence            44556666666665542   2221125566666666666  3332221111 12345666666666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		9e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		9e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-05
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-04

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 26/247 (10%)
Query: 15  VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
           +T L N+++L  L L N  I  I +  +N   L ++ L+  T I++  A   + +  L  
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTS--LQQ 155
Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
           L+ S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  +N + S    
Sbjct: 156 LNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 212
Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
           +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G    T+L
Sbjct: 213 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 192 VL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
            L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   +++D+S   
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--P 322
Query: 246 LSSLSKL 252
           +SSL+KL
Sbjct: 323 VSSLTKL 329

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 26/247 (10%)
Query: 15  VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
           +T L N+++L  L L N  I  I +  +N   L ++ L+  T I++  A   + +  L  
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTS--LQQ 155
Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
           L  S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  +N + S    
Sbjct: 156 LSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 212
Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
           +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G    T+L
Sbjct: 213 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 192 VL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
            L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   +++D+S   
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--P 322
Query: 246 LSSLSKL 252
           +SSL+KL
Sbjct: 323 VSSLTKL 329

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4   RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
           +++F N   T +T L N++ L  + ++N  I  I        PLA ++ L G T  N + 
Sbjct: 72  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 124
Query: 63  AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
             +           +E S  +  D+S     +SL +  F         L  +  LE LD+
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
           SS+ + D SV  +A +  NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  
Sbjct: 185 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 235
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
           I  ++ + +L  +D++N  I       G    T+L L      +++ L  L  L  L L 
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 295
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
           + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 296 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 333

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4   RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
           +++F N   T +T L N++ L  + ++N  I  I        PLA ++ L G T  N + 
Sbjct: 71  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 123
Query: 63  AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
             +           +E S  +  D+S     +SL +  F         L  +  LE LD+
Sbjct: 124 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 183
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
           SS+ + D SV  +A +  NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  
Sbjct: 184 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 234
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
           I  ++ + +L  +D++N  I       G    T+L L      +++ L  L  L  L L 
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 294
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
           + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 295 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 332

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 26/247 (10%)
Query: 15  VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
           +T L N+++L  L L N  I  I +  +N   L ++ L+  T I++  A   + +  L  
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTS--LQQ 155
Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
           L  S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  +N + S    
Sbjct: 156 LSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 212
Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
           +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G    T+L
Sbjct: 213 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 192 VL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
            L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   +++D+S   
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--P 322
Query: 246 LSSLSKL 252
           +SSL+KL
Sbjct: 323 VSSLTKL 329

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4   RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
           +++F N   T +T L N++ L  + ++N  I  I        PLA ++ L G T  N + 
Sbjct: 67  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 119
Query: 63  AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
             +           +E S  +  D+S     +SL +  F         L  +  LE LD+
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
           SS+ + D SV  +A +  NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  
Sbjct: 180 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 230
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
           I  ++ + +L  +D++N  I       G    T+L L      +++ L  L  L  L L 
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 290
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
           + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 291 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4   RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
           +++F N   T +T L N++ L  + ++N  I  I        PLA ++ L G T  N + 
Sbjct: 67  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 119
Query: 63  AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
             +           +E S  +  D+S     +SL +  F         L  +  LE LD+
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
           SS+ + D SV  +A +  NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  
Sbjct: 180 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 230
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
           I  ++ + +L  +D++N  I       G    T+L L      +++ L  L  L  L L 
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 290
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
           + Q+ D  + P+S  K L +L+L   +++D+S   +SSL+KL
Sbjct: 291 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
           L++ ++ ++    L  +  +  L+LS + + +  V  +A + + ++ L+L++T+ +   V
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQS-IKTLDLTSTQITD--V 122
Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 194
             LAG L NL++L L   QI +  IS ++ + +L+++ I N  +                
Sbjct: 123 TPLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS--------------D 165
Query: 195 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 254
           LT L NL+ L  L  +  ++SD  + PL++   LI + L+N  ++DVS   L++ S L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221
Query: 255 LSIRDAVLTN 264
           +++ +  +TN
Sbjct: 222 VTLTNQTITN 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-18
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-16
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-08
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	7e-04

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 20/291 (6%)

Query: 2   FPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTT 56
           F  L  L+L  T +++LP     +S+L+ L LS    +++ + +  N   L  +S+ G T
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMV 112
              E           L  LD+S+  +         L  +  L+ L+LS +       E  
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
                 L  L+L+ TR           +L  L++L+LS + +D  +      +P+L+ ++
Sbjct: 397 KEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           +                  +    +LQ L  LE L L    +S       ++ K + H+ 
Sbjct: 456 LQGNHFPKGN---------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           L +  LT  S+  LS L  +  L++    ++             + ++L  
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFIDIS 174
           +   L  S     +      +  L NL  L L+      I +           L  + ++
Sbjct: 34  STECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQ---HRLDTLVLT 89

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
              +    +            TAL     L+ L   QT +S     PL   K L  L L 
Sbjct: 90  ANPLIFMAE------------TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 282
           +  ++ + L +     KL  L  ++  +           +    L L+
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 43/294 (14%), Positives = 94/294 (31%), Gaps = 26/294 (8%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTT 56
             L  L    TG++ +      N  +LE L L +  I SI          L  +      
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 57  FIN-EREAFLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMVA- 113
                +E    ++ +    L+++ + ++            + L+   +       + +  
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 114 CVGANLRNLNLSNTRFSSAGVGILAG-HLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
               +L      +         +  G    ++E ++L      + + +       L+ +D
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           ++ T +                 + L  L+ L++L L   +  +      S F  L HLS
Sbjct: 285 LTATHLSEL-------------PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 233 L-RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL--GSFKPPRSLKLLDLHG 283
           +  N    ++    L +L  L  L +    +  S       +    L+ L+L  
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181
            N  N   +     I      + E L  S   +     +  S + +L F+D++   I   
Sbjct: 17  YNCENLGLNE----IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241
            +               Q+ + L+ L L    +       LS  K L HL      ++ +
Sbjct: 73  HED------------TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 242 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
               L +   L +L +    +++  L    P   LK+LD   
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 46/296 (15%), Positives = 90/296 (30%), Gaps = 54/296 (18%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
                 L  ++  +  +       + +L  L+L+ C I  I                   
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI------------------- 72

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC 114
                + F       L  L ++ + L       L+  KAL+HL    + I       +  
Sbjct: 73  ---HEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFI 171
               L +L L +   SS  +         L++L         +    +S +    +L  +
Sbjct: 128 Q-KTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-L 184

Query: 172 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS--TFKELI 229
           +++  DI G                   +    + LN   TQ        L   T + L 
Sbjct: 185 NLNGNDIAGIEPGAF-------------DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 230 HLSLRNASLTDVSLHQLSSLSK--LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
             +  +    D+S      L +  + +++++     N    +F     L+ LDL  
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 4e-19
 Identities = 55/270 (20%), Positives = 97/270 (35%), Gaps = 61/270 (22%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTT 56
           F      NL    VT     +   S++ +  +N  I S+  ++   N             
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN------------- 66

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
                          ++ L ++ + L+    LT +K L  L L  + I D  +  +  + 
Sbjct: 67  ---------------VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LSSLKDL- 108

Query: 117 ANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174
             L++L+L +   S      + G  HLP LE L L   +I D  I+ +S +  L  + + 
Sbjct: 109 KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 161

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
           +  I                +  L  L  L+ L L +  +SD  L  L+  K L  L L 
Sbjct: 162 DNQIS--------------DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 205

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
           +    +  ++  S+L     +   D  L  
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 4e-19
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 29/212 (13%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           +  +  +NS +     +  +  +  L L+ + + D  ++ +  +  NL  L L   +   
Sbjct: 45  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNL-KNLGWLFLDENKIKD 101

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
             +  L   L  L+ LSL    I D  I+ +  +P L+ + + N  I             
Sbjct: 102 --LSSLK-DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT------------ 144

Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
              +T L  L  L+ L+LE  Q+SD  + PL+   +L +L L    ++D+    L+ L  
Sbjct: 145 --DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLR--ALAGLKN 198

Query: 252 LTNLSIRDAVLTNSGLGSFKP---PRSLKLLD 280
           L  L +      N  +        P ++K  D
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 20/185 (10%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTT 56
            P ++ L L    +T +  ++   +L  L L    I  +  L+  +    L  +SL    
Sbjct: 64  LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK---LKSLSLEHN- 119

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
            I++    +++    L  L + N+ ++    L+++  L+ L L  + I D  +  +A + 
Sbjct: 120 GISDINGLVHL--PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVPLAGLT 175

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDI 173
             L+NL LS    S   +  LA  L NL++L L   +  +      S + +  ++K  D 
Sbjct: 176 -KLQNLYLSKNHISD--LRALA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 174 SNTDI 178
           S    
Sbjct: 232 SLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 204 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 263
           +       T +    +FP   F E I  +L+  S+TD      + L+ +  +   ++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 264 N-SGLGSFKPPRSLKLLDLHG 283
           +  G+       ++  L L+G
Sbjct: 57  SVQGIQYLP---NVTKLFLNG 74

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
              L +L L    +  L ++     L+ L+L +  I  I  G  +   L  + L     I
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-I 143

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
            +      +  + L  L + ++ +S    L  +  L++L LS + I D  +  +A +  N
Sbjct: 144 TDITVLSRL--TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK-N 198

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 169
           L  L L +    +  +   +  +    + +  G+ +    IS         
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.4 bits (215), Expect = 5e-19
 Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 28/294 (9%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
              ++ L +A   V  +  I    +LE LNL+   I  I     N   L  + +     I
Sbjct: 43  LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTN-KI 100

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
            +  A   +    L  L ++  ++S    L  +  +  L+L ++    D   +       
Sbjct: 101 TDISALQNLTN--LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT--G 156

Query: 119 LRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177
           L  L ++ ++       +    +L +L  LSL+  QI+D  IS ++ + SL +       
Sbjct: 157 LNYLTVTESKVKD----VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQ 210

Query: 178 IKGF--IQQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 229
           I     +  +     L +       L+ L NL+ L  L +   Q+SD  +  +    +L 
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLK 268

Query: 230 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
            L++ +  ++D+S   L++LS+L +L + +  L N  +       +L  L L  
Sbjct: 269 MLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 1e-15
 Identities = 47/269 (17%), Positives = 104/269 (38%), Gaps = 24/269 (8%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
             +L+ L +    +T +  +    +L  L L+   I  I     N   +  ++L     +
Sbjct: 87  LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNL 145

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
           ++      +  + L++L V+ S +     +  +  L  L L+ + I D S  + +    +
Sbjct: 146 SDLSPLSNM--TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-PLASLT--S 200

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
           L        + +         ++  L  L +   +I D  +S ++ +  L +++I    I
Sbjct: 201 LHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI 255

Query: 179 KGF--IQQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 230
                ++ +     L +       ++ L NL+ L  L L   Q+ +  +  +     L  
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
           L L    +TD+    L+SLSK+ +    +
Sbjct: 316 LFLSQNHITDIR--PLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 53/288 (18%), Positives = 122/288 (42%), Gaps = 27/288 (9%)

Query: 5   LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 64
           L+ L      +    +++      L   ++  ++   E ++ + K+ +AG   +   +  
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELES-ITKLVVAGEK-VASIQGI 62

Query: 65  LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 124
            Y+    L +L+++ + ++    L+ +  L +L + ++ I    +  +  +  NLR L L
Sbjct: 63  EYLTN--LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISALQNL-TNLRELYL 117

Query: 125 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF--I 182
           +    S         +L  +  L+L         +S +S M  L ++ ++ + +K    I
Sbjct: 118 NEDNISDI---SPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 183 QQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
             +     L L+      ++ L +L  L        Q++D  + P++    L  L + N 
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNN 231

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 283
            +TD+S   L++LS+LT L I    +++ + +        LK+L++  
Sbjct: 232 KITDLS--PLANLSQLTWLEIGTNQISDINAVKDLT---KLKMLNVGS 274

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 36/220 (16%), Positives = 87/220 (39%), Gaps = 35/220 (15%)

Query: 3   PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTF 57
             L++L +  + V  +  I+    L  L+L+   I+ I  L    +   L   +      
Sbjct: 155 TGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS---LHYFTAYV--- 208

Query: 58  INEREAFLYIET-SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD-DSVEMVACV 115
            N+      +   + L+ L + N+ ++    L  +  L  L++ ++ I D ++V+ +   
Sbjct: 209 -NQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLT-- 265

Query: 116 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
              L+ LN+ + + S   + +L  +L  L  L L+  Q+ +  +  +  + +L  + +S 
Sbjct: 266 --KLKMLNVGSNQISD--ISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 176 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 215
             I                +  L +L+ ++  +     + 
Sbjct: 321 NHIT--------------DIRPLASLSKMDSADFANQVIK 346

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 22/242 (9%)

Query: 50  ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGD 106
           I+        ++    +     +  +D+SNS +        L+Q   L++L L    + D
Sbjct: 73  IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132

Query: 107 DSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYM-- 162
             V  +A   +NL  LNLS  + FS   +  L      L+ L+LS      +  +     
Sbjct: 133 PIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191

Query: 163 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFP 221
            +  ++  +++S     G+ + +       LS    +   +L  L+L     + +     
Sbjct: 192 HVSETITQLNLS-----GYRKNL---QKSDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQE 242

Query: 222 LSTFKELIHLSLRN-ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 280
                 L HLSL     +   +L +L  +  L  L +   ++ +  L   K   +L  L 
Sbjct: 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-IVPDGTLQLLK--EALPHLQ 299

Query: 281 LH 282
           ++
Sbjct: 300 IN 301

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 39/259 (15%), Positives = 97/259 (37%), Gaps = 29/259 (11%)

Query: 70  SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 129
           SL   LD++  +L       ++ +   +         D           +++++LSN+  
Sbjct: 47  SLWQTLDLTGKNLHPDV-TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 105

Query: 130 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN----TDIKGFIQQV 185
             + +  +      L+ LSL G ++ D  ++ ++   +L  +++S     ++    +Q +
Sbjct: 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTL 163

Query: 186 GAE---------------TDLVLSLTALQNLNHLERLNLE--QTQVSDATLFPLSTF-KE 227
            +                T+  + +        + +LNL   +  +  + L  L      
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223

Query: 228 LIHLSLRN-ASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGW 285
           L+HL L +   L +    +   L+ L +LS+     +    L       +LK L + G  
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-- 281

Query: 286 LLTEDAILQFCKMHPRIEV 304
           ++ +  +    +  P +++
Sbjct: 282 IVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 49/270 (18%)

Query: 2   FPRLSFLNLAWTGVTK------LPNISSLECLNLSNCTI-DSILEGNENKAPLAKISLAG 54
             R+  ++L+ + +        L   S L+ L+L    + D I+      + L +++L+G
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 55  TTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS-SMIGDDSVE-MV 112
            +  +                + +  +L   C       L+ L+LS      +  V+  V
Sbjct: 152 CSGFS----------------EFALQTLLSSC-----SRLDELNLSWCFDFTEKHVQVAV 190

Query: 113 ACVGANLRNLNLS--NTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLK 169
           A V   +  LNLS        + +  L    PNL  L LS    + +        +  L+
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250

Query: 170 FIDISN-TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 228
            + +S   DI               +L  L  +  L+ L +    V D TL  L   + L
Sbjct: 251 HLSLSRCYDI----------IP--ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EAL 295

Query: 229 IHLSLRNASLTDVSLHQLSSLSKLTNLSIR 258
            HL +  +  T ++   + +        I+
Sbjct: 296 PHLQINCSHFTTIARPTIGNKKNQEIWGIK 325

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 53/295 (17%), Positives = 104/295 (35%), Gaps = 22/295 (7%)

Query: 4   RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA 63
           RL++ N     + K   ++++  ++L+  +I   LE          +S+           
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 64  FLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNL 122
            L      L  L ++ +  S       + +L +LDLS + +        + +G  +LR+L
Sbjct: 326 DL----PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGF 181
           +LS               L  L+ L    + +      S    +  L ++DIS T+ K  
Sbjct: 382 DLSFNGAIIMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 182 IQQV--GAETDLVLSLT-----------ALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 228
              +  G  +   L +               N  +L  L+L + Q+   +     T   L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 229 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
             L++ + +L  +     + L  L+ L      +  S       P+SL   +L  
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 54/313 (17%), Positives = 106/313 (33%), Gaps = 58/313 (18%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
                 ++L++  +  L      N S L+ L+LS C I++I                   
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI------------------- 71

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC 114
              E +A+       LS L ++ + +  F     + + +LE+L    + +       +  
Sbjct: 72  ---EDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMP-SLKF 170
           +   L+ LN+++    S  +     +L NL  + LS      I    + ++   P     
Sbjct: 127 LI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 171 IDISNTDIKGFIQQVGAETDL-VLSL-----------TALQNLNHLERLNLEQTQVSD-- 216
           +D+S   I     Q      L  L+L           T LQNL  L    L   +  D  
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 217 -ATLFPLSTFKELIHLSLRNASL-----TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
              +F  S  + L  +++    L         + +   L+ ++ +S+    +    L   
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDV 303

Query: 271 KPPRSLKLLDLHG 283
                 + L +  
Sbjct: 304 PKHFKWQSLSIIR 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 52/301 (17%), Positives = 90/301 (29%), Gaps = 41/301 (13%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGT- 55
             LS L L    +          ++SLE L      + S+          L K+++A   
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 56  -TFINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKA-LEHLDLSSSMIGDDS 108
                    F     + L  +D+S + +         FL +       LD+S + I    
Sbjct: 140 IHSCKLPAYFS--NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID--F 195

Query: 109 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG------TQIDDYAISYM 162
           ++  A  G  L  L L     SS  +     +L  L +  L          ++ +  S M
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 163 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 222
             +  +   +   T    F             +     L ++  ++L    +    L  +
Sbjct: 256 EGLCDVTIDEFRLTYTNDFS----------DDIVKFHCLANVSAMSLAGVSIK--YLEDV 303

Query: 223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 282
               +   LS+    L       L  L  L  L++       S         SL  LDL 
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSL-TLTM----NKGSISFKKVALPSLSYLDLS 358

Query: 283 G 283
            
Sbjct: 359 R 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 41/243 (16%), Positives = 81/243 (33%), Gaps = 24/243 (9%)

Query: 2   FPRLSFLNLAW---TGVTKLPNISSLECLNLSNCTIDSILEG---NENKAPLAKISLAGT 55
            P L  L L     +   K   + SL  L+LS   +         +     L  + L+  
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 56  TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 112
             I     F+      L  LD  +     ++ F     ++ L +LD+S +    D   + 
Sbjct: 387 GAIIMSANFM--GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
             +  +L  L ++   F    +  +  +  NL  L LS  Q++  +      +  L+ ++
Sbjct: 445 LGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           +S+ ++                      L  L  L+    ++  +        K L   +
Sbjct: 504 MSHNNLLFLDSS------------HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 233 LRN 235
           L N
Sbjct: 552 LTN 554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.9 bits (195), Expect = 8e-17
 Identities = 53/270 (19%), Positives = 96/270 (35%), Gaps = 61/270 (22%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTT 56
           F      NL    VT     +   S++ +  +N  I S+  ++   N             
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN------------- 69

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
                          ++ L ++ + L+    L  +K L  L L  + + D  +  +  + 
Sbjct: 70  ---------------VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDL- 111

Query: 117 ANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174
             L++L+L +   S      + G  HLP LE L L   +I D  I+ +S +  L  + + 
Sbjct: 112 KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
           +  I                +  L  L  L+ L L +  +SD  L  L+  K L  L L 
Sbjct: 165 DNQIS--------------DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
           +    +  ++  S+L     +   D  L  
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 26/221 (11%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           +  +  +NS +     +  +  +  L L+ + + D  ++ +A +  NL  L L   +   
Sbjct: 48  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLANL-KNLGWLFLDENKVKD 104

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
             +  L   L  L+ LSL    I D  I+ +  +P L+ + + N  I             
Sbjct: 105 --LSSLK-DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT------------ 147

Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
              +T L  L  L+ L+LE  Q+SD  + PL+   +L +L L    ++D+    L+ L  
Sbjct: 148 --DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLR--ALAGLKN 201

Query: 252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 292
           L  L +      N  +           +    G L+T + I
Sbjct: 202 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 38/184 (20%), Positives = 79/184 (42%), Gaps = 16/184 (8%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
            P ++ L L    +T +  ++   +L  L L    +  +    ++   L  +SL     I
Sbjct: 67  LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG-I 124

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
           ++    +++    L  L + N+ ++    L+++  L+ L L  + I    +  +A +   
Sbjct: 125 SDINGLVHL--PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGL-TK 179

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---MMPSLKFIDISN 175
           L+NL LS    S   +  LA  L NL++L L   +  +  I++ S   +  ++K  D S 
Sbjct: 180 LQNLYLSKNHISD--LRALA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 176 TDIK 179
              +
Sbjct: 237 VTPE 240

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 61/293 (20%), Positives = 123/293 (41%), Gaps = 30/293 (10%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
              L+ +N +   +T +  +     L  + ++N  I  I     N   L  ++L     I
Sbjct: 67  LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN-NQI 124

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
            + +    +    L+ L++S++++S    L+ + +L+ L   + +     +  +      
Sbjct: 125 TDIDPLKNLTN--LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL----TT 178

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
           L  L++S+ + S   + +L   L NLE L  +  QI D  I+ + ++ +L  + ++   +
Sbjct: 179 LERLDISSNKVSD--ISVL-AKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQL 233

Query: 179 KGFIQQVGAE--TDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 230
           K           TDL L+      L  L  L  L  L L   Q+S+  + PL+    L +
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTN 291

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           L L    L D+S   +S+L  LT L++    +++  +        L+ L  + 
Sbjct: 292 LELNENQLEDIS--PISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 69/294 (23%), Positives = 110/294 (37%), Gaps = 54/294 (18%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
                   L  T VT   + +    +  L      I   ++G E                
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI-KSIDGVEY-------------LN 68

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
           N            L+ ++ SN+ L+    L  +  L  + ++++ I D +  +      N
Sbjct: 69  N------------LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLT--N 113

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN--T 176
           L  L L N + +         +L NL  L LS   I D  IS +S + SL+ +   N  T
Sbjct: 114 LTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT 168

Query: 177 DIKGFIQQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 230
           D+K        E  L +S      ++ L  L +LE L     Q+SD  + PL     L  
Sbjct: 169 DLKPLANLTTLER-LDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDE 225

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 283
           LSL    L D+    L+SL+ LT+L + +  ++N + L        L  L L  
Sbjct: 226 LSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 57/297 (19%), Positives = 114/297 (38%), Gaps = 61/297 (20%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTT 56
              L  L+++   V+ +  ++   +LE L  +N  I  I  L    N             
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN------------- 222

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
                          L  L ++ + L     L  +  L  LDL+++ I   ++  ++ + 
Sbjct: 223 ---------------LDELSLNGNQLKDIGTLASLTNLTDLDLANNQI--SNLAPLSGL- 264

Query: 117 ANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
             L  L L   + S+    I     L  L  L L+  Q++D  IS +S + +L ++ +  
Sbjct: 265 TKLTELKLGANQISN----ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318

Query: 176 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 235
            +I                ++ + +L  L+RL     +VSD  +  L+    +  LS  +
Sbjct: 319 NNIS--------------DISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

Query: 236 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 292
             ++D++   L++L+++T L + D   TN+ +           +    G L+    I
Sbjct: 363 NQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 22/144 (15%)

Query: 140 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 199
            L       L  T + D      + +  +  +      IK              S+  ++
Sbjct: 22  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--------------SIDGVE 65

Query: 200 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
            LN+L ++N    Q++D  + PL    +L+ + + N  + D++   L++L+ LT L++ +
Sbjct: 66  YLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFN 121

Query: 260 AVLTNSGLGSFKPPRSLKLLDLHG 283
             +T+  +   K   +L  L+L  
Sbjct: 122 NQITD--IDPLKNLTNLNRLELSS 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 58/301 (19%), Positives = 112/301 (37%), Gaps = 29/301 (9%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
              L  LN+    +  +       + +L+ L+LSN         NE    LA   L    
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL---H 384

Query: 57  FIN---------EREAFLYIETSLLSFLDVSNSSLSR---FCFLTQMKALEHLDLSSSMI 104
            +N         E +AF ++    L  LD+  + + +         ++ +  + LS +  
Sbjct: 385 ILNLTKNKISKIESDAFSWLGH--LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 105 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMS 163
              +    A V  +L+ L L      +          L NL IL LS   I +     + 
Sbjct: 443 LQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 164 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 223
            +  L+ +D+ +      + ++    +    +  L+ L+HL  LNLE     +  +    
Sbjct: 502 GLEKLEILDLQHN----NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-PRSLKLLDLH 282
              EL  + L   +L  +     ++   L +L+++  ++T+     F P  R+L  LD+ 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 283 G 283
            
Sbjct: 618 F 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 29/280 (10%)

Query: 20  NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAG---TTFINEREAFLYIETSLLSFL 75
            +  LE LN+ +  I  I          L  +SL+    +      E F+ +  S L  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 76  DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 133
           +++ + +S+      + +  LE LDL  + IG +          N+  + LS  ++    
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISY--MSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
                  +P+L+ L L    + +   S      + +L  +D+SN +I             
Sbjct: 447 RNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD------- 498

Query: 192 VLSLTALQNLNHLERLNLEQTQVSD-----ATLFPLSTFKELIHL---SLRNASLTDVSL 243
                 L+ L  LE L+L+   ++          P+   K L HL   +L +    ++ +
Sbjct: 499 -----MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 244 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
                L +L  + +    L       F    SLK L+L  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 55/311 (17%), Positives = 108/311 (34%), Gaps = 41/311 (13%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP---------- 46
            P+L +  L +  +  L       + ++  LNL        +                  
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 47  LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS------RFCFLTQMKALEHLDLS 100
           L  +++     I   ++ ++     L +L +SNS  S                L  L+L+
Sbjct: 331 LEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 160
            + I     +  + +G +L  L+L          G     L N+  + LS  +      +
Sbjct: 390 KNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 220
             +++PSL+ + +    +K              S +  Q L +L  L+L    +++    
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDS----------SPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 221 PLSTFKELIHLSLRNASLTDVSLH--------QLSSLSKLTNLSIRDAVLTNSGLGSFKP 272
            L   ++L  L L++ +L  +  H         L  LS L  L++         +  FK 
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 273 PRSLKLLDLHG 283
              LK++DL  
Sbjct: 559 LFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 54/311 (17%), Positives = 114/311 (36%), Gaps = 46/311 (14%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
           + +L+ L++ +  ++KL       +  L+ LNL +  +  + +           + A  T
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK----------TFAFCT 97

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC 114
                          L+ L + ++S+ +       + K L  LDLS + +   S ++   
Sbjct: 98  --------------NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL--SSTKLGTQ 141

Query: 115 VG-ANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
           V   NL+ L LSN +  +     L      +L+ L LS  QI +++      +  L  + 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS--DATLFPLSTFKELIH 230
           ++N  +   + +          L        +  L+L  +Q+S    T F    +  L  
Sbjct: 202 LNNVQLGPSLTE---------KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 290
           L L   +L  V     + L +L    +    + +    S     +++ L+L   +     
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 291 AILQFCKMHPR 301
           ++    K+   
Sbjct: 313 SLASLPKIDDF 323

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 45/269 (16%), Positives = 87/269 (32%), Gaps = 50/269 (18%)

Query: 23  SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 82
           S E  + S+  +  + +                           + T+ ++ L+++++ L
Sbjct: 5   SHEVADCSHLKLTQVPDD--------------------------LPTN-ITVLNLTHNQL 37

Query: 83  SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAG 139
            R      T+   L  LD+  + I    +E   C     L+ LNL +   S       A 
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 140 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 199
              NL  L L    I     +      +L  +D+S+  +                L    
Sbjct: 96  -CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK------------LGTQV 142

Query: 200 NLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257
            L +L+ L L   ++    +    +     L  L L +  + + S     ++ +L  L +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 258 RDAVLTNS---GLGSFKPPRSLKLLDLHG 283
            +  L  S    L       S++ L L  
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSN 231

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 24/161 (14%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
              L+ L+L+   +  +       +  LE L+L +  +  + +      P+  +      
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK----- 533

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCF--LTQMKALEHLDLSSSMIGDDSVEMVAC 114
                        S L  L++ ++            +  L+ +DL  + +      +   
Sbjct: 534 -----------GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 155
              +L++LNL     +S    +      NL  L +     D
Sbjct: 583 Q-VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 51/290 (17%), Positives = 97/290 (33%), Gaps = 26/290 (8%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
              +S  +L    + ++ + S     + L L NC              L  +     T  
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLTFTSN 335

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCF----LTQMKALEHLDLSSSMIGDDSVEMVAC 114
               AF  ++   L FLD+S + LS             +L++LDLS + +   S   +  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174
               L +L+  ++         +   L NL  L +S T          + + SL+ + ++
Sbjct: 396 --EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
               +                     L +L  L+L Q Q+   +    ++   L  L++ 
Sbjct: 454 GNSFQENF-----------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-PRSLKLLDLHG 283
           + +   +       L+ L  L      +  S     +  P SL  L+L  
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 58/296 (19%), Positives = 96/296 (32%), Gaps = 30/296 (10%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTT 56
             LS L L    +  L       +SSL+ L      + S+          L ++++A   
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALE-HLDLSSSMIGDDSVE 110
             + +    +   + L  LD+S++ +          L QM  L   LDLS + +    ++
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQ 193

Query: 111 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM---SMMPS 167
             A     L  L L N   S   +      L  LE+  L   +  +         S +  
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 227
           L  + I    +      +    DL         L ++   +L    +    +   S    
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDL------FNCLTNVSSFSLVSVTIE--RVKDFSYNFG 305

Query: 228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
             HL L N         +L SL +LT  S +          S     SL+ LDL  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSLEFLDLSR 356

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 55/315 (17%), Positives = 108/315 (34%), Gaps = 65/315 (20%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
                 L+L++  +  L      +   L+ L+LS C I +I                   
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------- 67

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEM 111
              E  A+     S LS L ++ + +       F  L+    L+ L    + +       
Sbjct: 68  ---EDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSS---LQKLVAVETNLASLENFP 119

Query: 112 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF- 170
           +  +   L+ LN+++    S  +     +L NLE L LS  +I     + + ++  +   
Sbjct: 120 IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 171 ---IDISNTDIKGFIQQVGAETDL-VLSL-----------TALQNLNHLERLNLEQTQVS 215
              +D+S   +         E  L  L+L           T +Q L  LE   L   +  
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 216 DA---TLFPLSTFKELIHLSLRNASLTDVSL------HQLSSLSKLTNLSIRDAVLTNSG 266
           +      F  S  + L +L++    L  +           + L+ +++ S+    +T   
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS--VTIER 296

Query: 267 LGSFKPPRSLKLLDL 281
           +  F      + L+L
Sbjct: 297 VKDFSYNFGWQHLEL 311

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 22/168 (13%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
                LN            I      + + L LS   +           P L+ +D+S  
Sbjct: 12  YQCMELNFYK---------IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
           +I+                 A Q+L+HL  L L    +    L   S    L  L     
Sbjct: 63  EIQTIEDG------------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHG 283
           +L  +    +  L  L  L++   ++ +  L   F    +L+ LDL  
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 56/297 (18%), Positives = 120/297 (40%), Gaps = 59/297 (19%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTT 56
                 +    + VT     +    +  L+     + +I  ++   N             
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN------------- 64

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
                          L  L++ ++ ++    L  +  +  L+LS + + +  V  +A + 
Sbjct: 65  ---------------LIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGL- 106

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
            +++ L+L++T+ +   V  LA  L NL++L L   QI +  IS ++ + +L+++ I N 
Sbjct: 107 QSIKTLDLTSTQITD--VTPLA-GLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNA 161

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
            +                LT L NL+ L  L  +  ++SD  + PL++   LI + L+N 
Sbjct: 162 QVS--------------DLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNN 205

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL 293
            ++DVS   L++ S L  +++ +  +TN  +          ++    G  +    I 
Sbjct: 206 QISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 26/297 (8%)

Query: 5   LSFLNLAWTGVTKLP-NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINERE 62
             F NL     T++P  +++ E L LS   I ++   +      L  + L         +
Sbjct: 11  YRFCNL-----TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 63  AFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG- 116
              +     L  LD+ +S +       F  L     L  L L    + D  ++       
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH---LFELRLYFCGLSDAVLKDGYFRNL 122

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS--MMPSLKFIDIS 174
             L  L+LS  +  S  +    G L +L+ +  S  QI       +      +L F  ++
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLN------HLERLNLEQTQVSDATLFPLSTFKEL 228
              +   +     +         L+ L+       ++        +S +  F L     +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 229 IHLSLRNASLTDVSLHQLSSL--SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           +       ++ D   +  + L  S + +L +    + +     F+  + LK+L+L  
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 47/293 (16%), Positives = 105/293 (35%), Gaps = 39/293 (13%)

Query: 5   LSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFI 58
           +  L+L+   V  L       +  L+ LNL+   I+ I +        L  ++L+    +
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LL 326

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
            E  +  +     ++++D+  + ++         ++ L+ LDL  + +            
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI------HFI 380

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISN 175
            ++ ++ LS  +  +     L        ++ LS  ++++  I Y  + +P L+ + ++ 
Sbjct: 381 PSIPDIFLSGNKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 176 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ--VSDATLFPLSTFKE---LIH 230
                                       LE+L L +    ++  T      F+    L  
Sbjct: 436 NRFSSCSGDQ-----------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           L L +  L  +     S L+ L  LS+    LT           +L++LD+  
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 41/268 (15%), Positives = 98/268 (36%), Gaps = 33/268 (12%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
            P++++++L    +  +       +  L+ L+L +  + +I         +  I L+G  
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSGNK 392

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
            +   +  + +  +L+   +    +L    FL ++  L+ L L+ +     S +      
Sbjct: 393 LVTLPK--INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 117 ANLRNLNLSNTRFSSAGVGILAG----HLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
            +L  L L       A    L       L +L++L L+   ++       S + +L+ + 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           +++  +                L+      +LE L++ + Q+          F  L  L 
Sbjct: 511 LNSNRLT--------------VLSHNDLPANLEILDISRNQL---LAPNPDVFVSLSVLD 553

Query: 233 LR-NASLTDVSLHQLSSLSKLTNLSIRD 259
           +  N  + +  L    +    TN++I  
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAG 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 42/296 (14%), Positives = 94/296 (31%), Gaps = 33/296 (11%)

Query: 3   PRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEG---NENKAPLAKISLA 53
             L+ L+L+   +  L        ++SL+ ++ S+  I  + E          L+  SLA
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 54  GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 113
             +  +          +    + +    +S   +   +       +S S      +    
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH-- 240

Query: 114 CVGANLRNLNLSNTRFSSAGVGILAG-HLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
               ++                  AG    ++  L LS   +          +  LK ++
Sbjct: 241 ----HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           ++   I              ++  A   L++L+ LNL    + +          ++ ++ 
Sbjct: 297 LAYNKINK------------IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 288
           L+   +  +       L KL  L      L ++ L +     S+  + L G  L+T
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLD-----LRDNALTTIHFIPSIPDIFLSGNKLVT 395

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 48/289 (16%), Positives = 97/289 (33%), Gaps = 53/289 (18%)

Query: 22  SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81
             ++ L++    +      +   A L                    +   L    ++ + 
Sbjct: 3   LDIQSLDIQCEEL-----SDARWAELLP-------------LLQQCQVVRLDDCGLTEAR 44

Query: 82  LSRFCF-LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSAGVGI 136
                  L    AL  L+L S+ +GD  V  V          ++ L+L N   + AG G+
Sbjct: 45  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 137 LAGHL---PNLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQVGAE 188
           L+  L   P L+ L LS   + D  +  +          L+ + +    +        A 
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-------SAA 157

Query: 189 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE-----LIHLSLRNASLTDVSL 243
           +   L+ + L+     + L +    +++A +  L    +     L  L L +  +T  + 
Sbjct: 158 SCEPLA-SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 244 HQLSSL----SKLTNLSIRDAVLTNSGL-----GSFKPPRSLKLLDLHG 283
             L  +    + L  L++    L + G+     G   P   L+ L +  
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 49/274 (17%)

Query: 18  LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 77
           LP +   + + L +C                 ++ A    I    +        L+ L++
Sbjct: 24  LPLLQQCQVVRLDDC----------------GLTEARCKDI----SSALRVNPALAELNL 63

Query: 78  SNSSLSR-------FCFLTQMKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNT 127
            ++ L             T    ++ L L +  +      +++        L+ L+LS+ 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 128 RFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDIK 179
               AG+ +L   L      LE L L    +   +   ++ +    P  K + +SN D  
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-- 181

Query: 180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF----KELIHLSLRN 235
             I + G     VL      +   LE L LE   V+      L         L  L+L +
Sbjct: 182 --INEAGVR---VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 236 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 269
             L DV + +L       +  +R   +   G+ +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 53/293 (18%), Positives = 102/293 (34%), Gaps = 49/293 (16%)

Query: 18  LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 77
           L  + +L+ L+LS+  +     G+     L +  L     +         E   L +  +
Sbjct: 109 LRTLPTLQELHLSDNLL-----GDAGLQLLCEGLLDPQCRL---------EKLQLEYCSL 154

Query: 78  SNSSLSRFCF-LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSA 132
           S +S       L      + L +S++ I +  V ++          L  L L +   +S 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

Query: 133 GVGILAGHL---PNLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQ 184
               L G +    +L  L+L   ++ D  ++ +          L+ + I    I      
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI------ 268

Query: 185 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS-----TFKELIHLSLRNASLT 239
             A+    L    L+    L+ L+L   ++ D     L         +L  L +++ S T
Sbjct: 269 -TAKGCGDLC-RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

Query: 240 DVSLHQLSSL----SKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHG 283
                  SS+      L  L I +  L ++G+        +P   L++L L  
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 63/322 (19%), Positives = 104/322 (32%), Gaps = 68/322 (21%)

Query: 3   PRLSFLNLAWTGVT----------KLPNISSLECLNLSNCTIDSILEGNENKAPLAKISL 52
           P L  L+L+   +            L     LE L L  C++ +                
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA---------------- 156

Query: 53  AGTTFINEREAFLYIETSLLSFLDVSNSSLSR-------FCFLTQMKALEHLDLSSSMIG 105
           A    +    A +         L VSN+ ++                 LE L L S  + 
Sbjct: 157 ASCEPL----ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212

Query: 106 DDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYA 158
            D+   +       A+LR L L + +    G+  L   L      L  L +    I    
Sbjct: 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272

Query: 159 ISYMSMM----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 214
              +  +     SLK + ++  ++       G E   +L  T L+    LE L ++    
Sbjct: 273 CGDLCRVLRAKESLKELSLAGNEL-------GDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 215 SDATLFPLS----TFKELIHLSLRNASLTDVSLHQLS-----SLSKLTNLSIRDAVLTNS 265
           + A     S      + L+ L + N  L D  + +L        S L  L + D  +++S
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

Query: 266 GLGSF----KPPRSLKLLDLHG 283
              S         SL+ LDL  
Sbjct: 386 SCSSLAATLLANHSLRELDLSN 407

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 47/302 (15%), Positives = 103/302 (34%), Gaps = 59/302 (19%)

Query: 3   PRLSFLNLAWT-----GVTKL-----PNISSLECLNLSNCTID--------SILEGNENK 44
           P    L ++       GV  L      +   LE L L +C +          I+    + 
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS- 228

Query: 45  APLAKISLAGTTFINE-----REAFLYIETSLLSFLDVSNSSLSRFCF------LTQMKA 93
             L +++L      +          L+  + L + L +    ++          L   ++
Sbjct: 229 --LRELALGSNKLGDVGMAELCPGLLHPSSRLRT-LWIWECGITAKGCGDLCRVLRAKES 285

Query: 94  LEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEI 146
           L+ L L+ + +GD+      E +   G  L +L + +  F++A     +        L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 147 LSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 201
           L +S  +++D  +  +          L+ + +++ D+          +   L+   L   
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS----SCSS---LA-ATLLAN 397

Query: 202 NHLERLNLEQTQVSDATLFPLSTFKE-----LIHLSLRNASLTDVSLHQLSS-LSKLTNL 255
           + L  L+L    + DA +  L          L  L L +   ++    +L +      +L
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 457

Query: 256 SI 257
            +
Sbjct: 458 RV 459

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.4 bits (185), Expect = 5e-15
 Identities = 54/331 (16%), Positives = 112/331 (33%), Gaps = 33/331 (9%)

Query: 3   PRLSFLNLAWTGVTK---------LPNISSLECLNLSNC-----TIDSILEGNENKAPLA 48
            ++  L +  +  ++           + +SLE LN         +   +     N   L 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 49  KISLAGTTFINEREAFLYIET-SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD 107
            + +     +     F             ++        ++  +   +   L  S +G +
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 108 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 167
            + ++    A +R L+L      +     L    PNLE+L       D            
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 168 LKFIDISN-TDIKGFIQQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLST- 224
           LK + I    D +G   + G  +     L AL Q    LE + +  + +++ +L  + T 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 225 FKELIHLSLRN----ASLTDVSLHQ-----LSSLSKLTNLSIRD--AVLTNSGLGSF-KP 272
            K L    L        +TD+ L       L    KL   +       LT+ GL    + 
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 273 PRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 303
             +++ + L G    +++ +++F +  P ++
Sbjct: 462 SPNVRWMLL-GYVGESDEGLMEFSRGCPNLQ 491

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 72.3 bits (177), Expect = 6e-14
 Identities = 43/275 (15%), Positives = 90/275 (32%), Gaps = 43/275 (15%)

Query: 3   PRLSFLNLAWT------GVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGT 55
            ++  L+L +         T +    +LE L   N   D  LE        L ++ +   
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 56  TFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 115
                 E     E  L+S       +L++ C     + LE++ +  S I ++S+E +   
Sbjct: 353 ADEQGME----DEEGLVS--QRGLIALAQGC-----QELEYMAVYVSDITNESLESIGTY 401

Query: 116 GANLRNLNLSNTRFSS--------AGVGILAGHLPNLEILSLSG--TQIDDYAISYMSMM 165
             NL +  L                GV  L      L   +       + D  +SY+   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 166 -PSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLS 223
            P+++++ +               +D    L    +   +L++L +     S+  +    
Sbjct: 462 SPNVRWMLLGYVGE----------SDE--GLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509

Query: 224 T-FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257
           T    L +L ++    +      +       N+ +
Sbjct: 510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 87  FLTQMKALEHLDLSSSMIGDDSVEMVA-CVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 144
               ++ L+ +     ++ D  ++ +A     +L  L L   + F++ G+  +  H   +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166

Query: 145 EILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQN 200
           + L +  +   +    ++  +     SL+ ++   T+           +   L   A +N
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-------SPKDLETIA-RN 218

Query: 201 LNHLERLNLEQ-TQVSDATLFPLST-FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 258
              L  + +     +     F  +   +E    SL            L    KL  L + 
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 259 DAVLTNSGLGSFKP-PRSLKLLDLHGGWLLTEDAILQFCKMH 299
              +  + +    P    ++ LDL    L TED      K  
Sbjct: 279 Y--MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 30/301 (9%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
           FP L  L L       + N+            +  I         L  +        +  
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ---LKSVHFRRMIVSDLD 128

Query: 62  -EAFLYIETSLLSFLDVSN----SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
            +         L  L +      ++      +T  + ++ L +  S   +   + +  + 
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 117 AN---LRNLNLSNT---RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 170
            +   L  LN   T   + S   +  +A +  +L  + +   +I +  + +     +L+ 
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLEE 247

Query: 171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF-KELI 229
               + +          +  +      L     L RL L  + +    +  L  F  ++ 
Sbjct: 248 FCGGSLN---------EDIGMPEKYMNLVFPRKLCRLGL--SYMGPNEMPILFPFAAQIR 296

Query: 230 HLSLRNASL-TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLDLHGGWLL 287
            L L  A L T+     +     L  L  R+ V+ + GL    +  + LK L +  G   
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADE 355

Query: 288 T 288
            
Sbjct: 356 Q 356

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 25/185 (13%)

Query: 3   PRLSFLNLAWTGVT---------KLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLA 53
             L ++ +  + +T          L N+     + L      + L  +     L      
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI-GCK 436

Query: 54  GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 113
                       Y+    L+  D+  S + ++        +  + L      D+ +   +
Sbjct: 437 KLRRFA-----FYLRQGGLT--DLGLSYIGQYS-----PNVRWMLLGYVGESDEGLMEFS 484

Query: 114 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM---MPSLKF 170
               NL+ L +    FS   +      LP+L  L + G +        M M     +++ 
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544

Query: 171 IDISN 175
           I    
Sbjct: 545 IPSRR 549

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 52/287 (18%), Positives = 96/287 (33%), Gaps = 37/287 (12%)

Query: 18  LPNISSLECLNLSNCTI-DSILEGNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFL 75
             + + LE + L    + D  LE           + L+     +                
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS---------------- 144

Query: 76  DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN---LRNLNLSNTR--FS 130
               ++++  C     + L+ LDL  S + D S   ++        L +LN+S      S
Sbjct: 145 TDGLAAIAATC-----RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199

Query: 131 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD 190
            + +  L    PNL+ L L+     +   + +   P L+ +        G+  +V  +  
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG-----GYTAEVRPDVY 254

Query: 191 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL-SSL 249
             LS  AL     L  L+     V        S    L  L+L  A++    L +L    
Sbjct: 255 SGLS-VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 250 SKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLDLHGGWLLTEDAILQF 295
            KL  L + D +  ++GL       + L+ L +        +  +  
Sbjct: 314 PKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 49/339 (14%), Positives = 103/339 (30%), Gaps = 46/339 (13%)

Query: 2   FPRLSFLNLAWTGVTKL---------PNISSLECLNLSNCT-------IDSILEGNENKA 45
              L  L+L  + V  +            +SL  LN+S          ++ ++    N  
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN-- 212

Query: 46  PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM-------KALEHLD 98
            L  + L     + +    L     L        ++  R    + +       K L  L 
Sbjct: 213 -LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 99  LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158
                     +  V  V + L  LNLS     S  +  L    P L+ L +    I+D  
Sbjct: 272 GFWD-AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYIEDAG 329

Query: 159 ISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 217
           +  ++     L+ + +  ++    ++   A T+  L   +      LE +     Q+++A
Sbjct: 330 LEVLASTCKDLRELRVFPSE-PFVMEPNVALTEQGLVSVS-MGCPKLESVLYFCRQMTNA 387

Query: 218 TLFPLST-FKELIHLSLR----------NASLTDVSLHQL-SSLSKLTNLSIRDAVLTNS 265
            L  ++     +    L                D+    +      L  LS+    LT+ 
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDK 446

Query: 266 GLGSF-KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 303
                    + +++L +      ++  +         + 
Sbjct: 447 VFEYIGTYAKKMEMLSV-AFAGDSDLGMHHVLSGCDSLR 484

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 17/216 (7%)

Query: 97  LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQID 155
           +           +E ++     L  + L     +   + ++A    N ++L LS      
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144

Query: 156 DYAISYM-SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE--QT 212
              ++ + +   +LK +D+  +D+          +   LS         L  LN+    +
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDD-------VSGHWLS-HFPDTYTSLVSLNISCLAS 196

Query: 213 QVSDATLFPLSTF-KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG--- 268
           +VS + L  L T    L  L L  A   +     L    +L  L                
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 269 -SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 303
            S       +L  L G W      +     +  R+ 
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 40/282 (14%), Positives = 88/282 (31%), Gaps = 46/282 (16%)

Query: 3   PRLSFLNLAWTGVTK------LPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGT 55
            RL+ LNL++  V        L     L+ L + +   D+ LE   +    L ++ +  +
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348

Query: 56  TFINEREAFL--------------YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS- 100
                                    +E+ L     ++N++L           +    L  
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI--TIARNRPNMTRFRLCI 406

Query: 101 ---------SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 151
                    +    D     +     +LR L+LS    +      +  +   +E+LS++ 
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAF 465

Query: 152 TQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 210
               D  + ++     SL+ ++I +              D  L L     L  +  L + 
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPF----------GDKAL-LANASKLETMRSLWMS 514

Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
              VS      L      +++ + +      S  +   + ++
Sbjct: 515 SCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERV 556

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 89  TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 148
            QM +L ++ L++  + D +  +      N+++L ++N   ++     ++G L NLE L 
Sbjct: 41  AQMNSLTYITLANINVTDLT-GIEYAH--NIKDLTINNIHATN--YNPISG-LSNLERLR 94

Query: 149 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN 208
           + G  +    I  +S + SL  +DIS++                  LT +  L  +  ++
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD------------SILTKINTLPKVNSID 142

Query: 209 LEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
           L     ++D  + PL T  EL  L+++   + D     +    KL  L    
Sbjct: 143 LSYNGAITD--IMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 5e-14
 Identities = 28/169 (16%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
               N  L  +  ++    I    + +L  ++L+   + D  ++ +    ++K + I+N 
Sbjct: 23  KAYLNGLLGQSSTAN----ITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
                            +   +  L++LERL +    V+   +  LS    L  L + ++
Sbjct: 77  HAT--------------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 237 SLTDVSLHQLSSLSKLTNLSIRD-AVLTN-SGLGSFKPPRSLKLLDLHG 283
           +  D  L ++++L K+ ++ +     +T+   L +      LK L++  
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP---ELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 43/171 (25%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           +  L ++N   + +  ++ +  LE L +    +  D +             NLS      
Sbjct: 68  IKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP------------NLSG----- 110

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS-NTDIKGFIQQVGAETD 190
                    L +L +L +S +  DD  ++ ++ +P +  ID+S N  I            
Sbjct: 111 ---------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT----------- 150

Query: 191 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241
               +  L+ L  L+ LN++   V D     +  F +L  L   + ++   
Sbjct: 151 ---DIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGK 196

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 27/305 (8%)

Query: 1   MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAG 54
           +      L+L    +  L      +   LE L L+   + ++  G   N   L  + L  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 55  TTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 111
              +      ++   S L+ LD+S      L  + F   +  L+ L++  + +    +  
Sbjct: 90  -NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLV--YISH 145

Query: 112 VACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 170
            A  G  +L  L L     +S     L+ HL  L +L L    I+         +  LK 
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 171 IDISNTDIKGFIQQVGAE----TDLVLS---LT-----ALQNLNHLERLNLEQTQVSDAT 218
           ++IS+      +          T L ++   LT     A+++L +L  LNL    +S   
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

Query: 219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 278
              L     L  + L    L  V  +    L+ L  L++    LT      F    +L+ 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

Query: 279 LDLHG 283
           L L  
Sbjct: 325 LILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 20/199 (10%)

Query: 94  LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 153
              LDL  + I   + +  A    +L  L L+    S+   G     L NL  L L   +
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNR 91

Query: 154 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-- 211
           +    +   + + +L  +DIS   I             +L     Q+L +L+ L +    
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIV------------ILLDYMFQDLYNLKSLEVGDND 139

Query: 212 -TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
              +S      L++   L  L+L   +LT +    LS L  L  L +R   +      SF
Sbjct: 140 LVYISHRAFSGLNS---LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 271 KPPRSLKLLDLHGGWLLTE 289
           K    LK+L++     L  
Sbjct: 197 KRLYRLKVLEISHWPYLDT 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 44/262 (16%), Positives = 87/262 (33%), Gaps = 60/262 (22%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTT 56
                  NL    VT L +      ++  N  N  I S+  ++   N             
Sbjct: 18  LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTN------------- 64

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
                          L  L +S++ +S    L  +  LE L ++ + + + +        
Sbjct: 65  ---------------LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN----GIPS 105

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
           A L  L L N          L  HL NLEILS+   ++    I  +  +  L+ +D+   
Sbjct: 106 ACLSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGN 160

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL-SLRN 235
           +I               +   L  L  +  ++L   +  +    P+    EL    ++++
Sbjct: 161 EIT--------------NTGGLTRLKKVNWIDLTGQKCVN---EPVKYQPELYITNTVKD 203

Query: 236 ASLTDVSLHQLSSLSKLTNLSI 257
                +S + +S+     +  +
Sbjct: 204 PDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 25/192 (13%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           +   +  NS++     +     L+ L LS + I D  +  +  +   L  L+++  R  +
Sbjct: 43  VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSPLKDL-TKLEELSVNRNRLKN 99

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
               +       L  L L   ++ D     +  + +L+ + I N  +K            
Sbjct: 100 ----LNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK------------ 141

Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
             S+  L  L+ LE L+L   ++++     L+  K++  + L      +  +     L  
Sbjct: 142 --SIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

Query: 252 LTNLSIRDAVLT 263
              +   D    
Sbjct: 198 TNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 28/168 (16%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
           AN    NL     +   +      L  ++  +   + I    ++ M    +LK + +S+ 
Sbjct: 19  ANAVKQNLGKQSVTD--LVSQK-ELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN 73

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
            I                L+ L++L  LE L++ + ++ +  L  + +   L  L L N 
Sbjct: 74  QIS--------------DLSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFLDNN 116

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 283
            L D     L  L  L  LSIR+  L +   LG       L++LDLHG
Sbjct: 117 ELRDTD--SLIHLKNLEILSIRNNKLKSIVMLGFLS---KLEVLDLHG 159

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 31/223 (13%)

Query: 72  LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 127
            + L++ +    SL    F  ++  L  L LSS+ +        +  G  +L+ L+LS  
Sbjct: 30  ATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM---MPSLKFIDISNTDIKGFIQQ 184
              +     L   L  LE L    + +    +S  S+   + +L ++DIS+T  +     
Sbjct: 89  GVITMSSNFL--GLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTHTR----- 139

Query: 185 VGAETDLVLSLTALQNLNHLERLNLE----QTQVSDATLFPLSTFKELIHLSLRNASLTD 240
                  V        L+ LE L +     Q          L     L  L L    L  
Sbjct: 140 -------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLEQ 189

Query: 241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           +S    +SLS L  L++      +     +K   SL++LD   
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 59/274 (21%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
               + L L    +  LP      ++ L  L+LS+  +                     +
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-------------GCCSQS 73

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSR----FCFLTQMKALEHLDLSSSMIGDDSVEMV 112
                       T+ L +LD+S + +      F  L Q   LEHLD   S +     + +
Sbjct: 74  DFG---------TTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNL-----KQM 116

Query: 113 ACVGA-----NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM-SMMP 166
           +         NL  L++S+T    A  GI  G L +LE+L ++G    +  +  + + + 
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 226
           +L F+D+S   ++             LS TA  +L+ L+ LN+          FP     
Sbjct: 176 NLTFLDLSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 227 ELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRD 259
            L  L      +      +L    S L  L++  
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 18/167 (10%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS------SLECLNLSNCTIDSI----LEGNENKAPLAKIS 51
             +L  L+   + + ++   S      +L  L++S+            G  +   L  + 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLK 156

Query: 52  LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSV 109
           +AG +F       ++ E   L+FLD+S   L +        + +L+ L++S +     S+
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SL 214

Query: 110 EMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 155
           +        +L+ L+ S     ++    L     +L  L+L+     
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 56/284 (19%), Positives = 107/284 (37%), Gaps = 23/284 (8%)

Query: 4   RLSFLNLAWTGVTKL-PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 62
           RL++L+     +  L   ++++   +L + TI+ + + + N      + L       +  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVN----CKFG 317

Query: 63  AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRN 121
            F  ++   L  L  +++          + +LE LDLS + +        +  G  +L+ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKG 180
           L+LS     +     L   L  LE L    + +      S    + +L ++DIS+T  + 
Sbjct: 378 LDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLT 239
               +               L+ LE L +      +  L    +  + L  L L    L 
Sbjct: 436 AFNGI------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
            +S    +SLS L  L++    L +   G F    SL+ + LH 
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 45/265 (16%), Positives = 91/265 (34%), Gaps = 25/265 (9%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
              +S  +L    + ++ + S     + L L NC              L +++    T  
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTF---TSN 335

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVAC 114
               AF  ++   L FLD+S + LS             +L++LDLS + +   ++     
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFL 393

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174
               L +L+  ++         +   L NL  L +S T          + + SL+ + ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
               +                     L +L  L+L Q Q+   +    ++   L  L++ 
Sbjct: 454 GNSFQENFLP-----------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRD 259
           +  L  V       L+ L  + +  
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 58/312 (18%), Positives = 108/312 (34%), Gaps = 55/312 (17%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
                 L+L++  +  L      +   L+ L+LS C I +I                   
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------- 67

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC 114
              E  A+     S LS L ++ + +        + + +L+ L    + +       +  
Sbjct: 68  ---EDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF---- 170
           +   L+ LN+++    S  +     +L NLE L LS  +I     + + ++  +      
Sbjct: 123 L-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 171 IDISNTDIKGFIQQVGAETDL-VLSL-----------TALQNLNHLERLNLEQTQVSDA- 217
           +D+S   +         E  L  L+L           T +Q L  LE   L   +  +  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 218 --TLFPLSTFKELIHLS---LRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFK 271
               F  S  + L +L+    R A L       +   + LTN+S    V +T   +  F 
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 272 PPRSLKLLDLHG 283
                + L+L  
Sbjct: 302 YNFGWQHLELVN 313

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 49/271 (18%), Positives = 97/271 (35%), Gaps = 56/271 (20%)

Query: 1   MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 55
           +      LNL    +  +      ++  LE L LS   I +I  G               
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG--------------- 106

Query: 56  TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSV 109
            F            + L+ L++ +   +++    F   +  L+ L L +     I   + 
Sbjct: 107 AFNG---------LANLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPIESIPSYAF 156

Query: 110 EMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 168
             +     +LR L+L    R S    G   G L NL  L+L+   + +  I  ++ +  L
Sbjct: 157 NRIP----SLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLRE--IPNLTPLIKL 209

Query: 169 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 228
             +D+S   +              +   + Q L HL++L + Q+Q+           + L
Sbjct: 210 DELDLSGNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 229 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
           + ++L + +LT +     + L  L  + +  
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 19/227 (8%)

Query: 72  LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 127
              L++       +    F   ++ LE L LS + I   ++E+ A  G ANL  L L + 
Sbjct: 66  TRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDN 122

Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN----TDI-KGFI 182
           R ++   G     L  L+ L L    I+       + +PSL+ +D+      + I +G  
Sbjct: 123 RLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 183 QQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
           + +     L L+      +  L  L  L+ L+L    +S            L  L +  +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
            +  +  +   +L  L  +++    LT      F P   L+ + LH 
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 9e-12
 Identities = 49/330 (14%), Positives = 101/330 (30%), Gaps = 65/330 (19%)

Query: 21  ISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINEREAFLYIETSL---- 71
             S+E  +L    I +     +         + +I L+G T     EA  ++  ++    
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIASKK 60

Query: 72  -LSFLDVSNSSLSRFCF------------LTQMKALEHLDLSSSMIGDDSVEMVA---CV 115
            L   + S+    R               L +   L  + LS +  G  + E +      
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 116 GANLRNLNLSNTRFSSAGVGILAGHL------------PNLEILSLSGTQIDDYAISYMS 163
              L +L L N          +A  L            P L  +     ++++ ++   +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 164 MM----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 219
                   L  + +        I+  G E  L+     L     L+ L+L+    +    
Sbjct: 181 KTFQSHRLLHTVKMVQNG----IRPEGIEHLLL---EGLAYCQELKVLDLQDNTFTHLGS 233

Query: 220 FPLS----TFKELIHLSLRNASLTDVSLHQLSSL------SKLTNLSIRDAVLTNSGLGS 269
             L+    ++  L  L L +  L+      +           L  L ++   +    + +
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 270 F-----KPPRSLKLLDLHGGWLLTEDAILQ 294
                 +    L  L+L+G     ED ++ 
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 41/286 (14%), Positives = 84/286 (29%), Gaps = 59/286 (20%)

Query: 18  LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 77
           + +   LE    S+     +   +E    L  +  A                  L  + +
Sbjct: 56  IASKKDLEIAEFSDIFTGRV--KDEIPEALRLLLQALLKCPK------------LHTVRL 101

Query: 78  SNSSLSRFC------FLTQMKALEHLDLSSSMIGDDSVEMVA------------CVGANL 119
           S+++           FL++   LEHL L ++ +G  +   +A                 L
Sbjct: 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 120 RNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISY-----MSMMPSLKFI 171
           R++     R  +  +   A        L  + +    I    I +     ++    LK +
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 172 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD------ATLFPLSTF 225
           D+ +                 L+  AL++  +L  L L    +S          F     
Sbjct: 222 DLQDNTF-------THLGSSALA-IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 226 KELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTNSG 266
             L  L L+   +   ++  L +     +  L  L +     +   
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 44/311 (14%), Positives = 100/311 (32%), Gaps = 65/311 (20%)

Query: 1   MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 55
           + P  + L+L    +++L       +  L  L L N  I  I E           + +  
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK----------AFSPL 101

Query: 56  TFINEREAFLYIE----TSL-------LSFLDVSN---SSLSRFCFLTQMKALEHLDLSS 101
             + +    LYI       +       L  L + +     + +  F + ++ +  +++  
Sbjct: 102 RKLQK----LYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF-SGLRNMNCIEMGG 156

Query: 102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 161
           + + +   E  A  G  L  L +S  + +     I       L  L L   +I    +  
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTG----IPKDLPETLNELHLDHNKIQAIELED 212

Query: 162 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ---TQVSDAT 218
           +     L  + + +  I+            ++   +L  L  L  L+L+    ++V    
Sbjct: 213 LLRYSKLYRLGLGHNQIR------------MIENGSLSFLPTLRELHLDNNKLSRVPAG- 259

Query: 219 LFPLSTFKELIHLSLRNASLTDVS------LHQLSSLSKLTNLSIRDAVLTNSGL--GSF 270
              L   K L  + L   ++T V       +      +    +S+ +  +    +   +F
Sbjct: 260 ---LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 271 KPPRSLKLLDL 281
           +       +  
Sbjct: 317 RCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 25/216 (11%)

Query: 72  LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 127
            + LD+ N   S L +  F   ++ L  L L ++ I    +   A      L+ L +S  
Sbjct: 56  TTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKN 112

Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 187
                   I      +L  L +   +I        S + ++  I++    +         
Sbjct: 113 HLVE----IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL--------- 159

Query: 188 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 247
             +      A   L  L  L + + +++     P    + L  L L +  +  + L  L 
Sbjct: 160 -ENSGFEPGAFDGLK-LNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLL 214

Query: 248 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
             SKL  L +    +     GS     +L+ L L  
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 35/271 (12%), Positives = 87/271 (32%), Gaps = 48/271 (17%)

Query: 22  SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81
            ++  L+L           +++ +                +AF  +  S+ S L++  + 
Sbjct: 109 FTITVLDLGWNDF-----SSKSSSEFK-------------QAFSNLPASITS-LNLRGND 149

Query: 82  LSRFC-------FLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFS 130
           L                  +  L+L  + +   +     + +A + A++ +L+LS     
Sbjct: 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209

Query: 131 SAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDIKGFI 182
                 LA        ++  L+L    +   ++  + ++      L+ + +    +K   
Sbjct: 210 LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK--- 266

Query: 183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE-----LIHLSLRNAS 237
             +  E        A  N+  +  ++    ++  +   P+S             SL N  
Sbjct: 267 -NMSKE-QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC 324

Query: 238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 268
           L     HQ +         +R+++ T   L 
Sbjct: 325 LIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 37/226 (16%)

Query: 87  FLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 142
           F +    +  LDLS + +   S     +  A   A++ +LNLS           L   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 143 ----NLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQVGAETDLVL 193
               N+  L+LSG  +   +   +         ++  +D+   D         +++    
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-------SSKSSSEF 129

Query: 194 SLTALQNLN-HLERLNLEQTQVSDATLFPLSTF-----KELIHLSLRNASLTDVSLHQLS 247
              A  NL   +  LNL    +   +   L          +  L+LR  +L   +  +L+
Sbjct: 130 K-QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188

Query: 248 SL-----SKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHG 283
                  + +T+L +   +L               P  +  L+L  
Sbjct: 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 39/317 (12%), Positives = 103/317 (32%), Gaps = 63/317 (19%)

Query: 18  LPNISSLECLNLSNCTID-----SILEG-NENKAPLAKISLAGTTFINEREAFLYIETSL 71
                 +  L+LS   +       +++      A +  ++L+G + +  + +       L
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNS-----DEL 71

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNT 127
           +  L    ++            +  L+LS + +   S     + +A +   +  L+L   
Sbjct: 72  VQILAAIPAN------------VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Query: 128 RFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDI 178
            FSS               ++  L+L G  +   +   +  +      ++  +++   ++
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 179 KGFIQQVGAETDLVLSLTALQNLN-HLERLNLEQTQVSDATLFPLSTF-----KELIHLS 232
                   ++    L+   L ++   +  L+L    +   +   L+         ++ L+
Sbjct: 180 -------ASKNCAELA-KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 233 LRNASLTDVSLHQLSSL----SKLTNLSIRDAVLTNSG-------LGSFKPPRSLKLLDL 281
           L    L   SL  L  L      L  + +   ++ N           +F   + + L+D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 282 HGGWLLTEDAILQFCKM 298
             G  +     +    +
Sbjct: 292 -NGKEIHPSHSIPISNL 307

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 50/308 (16%), Positives = 98/308 (31%), Gaps = 57/308 (18%)

Query: 2   FPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 60
           F      + ++  + KL   I  L  +   +CT++ + + N ++              + 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE-------------SDV 276

Query: 61  REAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGA- 117
                 +ET  +  L +    L        + ++ ++ + + +S +    V         
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLK 334

Query: 118 NLRNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDI 173
           +L  L+LS        +      G  P+L+ L LS   +         +  + +L  +DI
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 174 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 233
           S                      + Q    +  LNL  T +    +      + L  L +
Sbjct: 395 SRNTFHPM-------------PDSCQWPEKMRFLNLSSTGI---RVVKTCIPQTLEVLDV 438

Query: 234 RNASLTDVSLH------------QLSSL------SKLTNLSIRDAVLTNSGLGSFKPPRS 275
            N +L   SL             +L +L        L  + I    L +   G F    S
Sbjct: 439 SNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 276 LKLLDLHG 283
           L+ + LH 
Sbjct: 499 LQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 47/300 (15%), Positives = 109/300 (36%), Gaps = 23/300 (7%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGT 55
              L  L L  + +  +      ++ SLE L+LS+  + S+          L  ++L G 
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 56  TFINEREAFLYIETSLLSFLDVSN----SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 111
            +       L+   + L  L + N    S + R  F   + +L  L++ +  + +   + 
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQS 167

Query: 112 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 171
           +  +  ++ +L L  +  +          L ++  L L  T +  +  S + +       
Sbjct: 168 LKSIR-DIHHLTLHLSESAFLLEIFADI-LSSVRYLELRDTNLARFQFSPLPVDEVSS-- 223

Query: 172 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 231
            +     +G +    +  +L+  L  +  L+ +E  +     + D          EL  +
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 232 ---SLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
              ++R   +    L        S L K+  +++ ++ +        +  +SL+ LDL  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 8e-10
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 22/227 (9%)

Query: 70  SLLSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 124
           + L  L + +S ++      F  L     LEHLDLS + +   S      + ++L+ LNL
Sbjct: 50  ANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDNHLSSLSSSWFGPL-SSLKYLNL 105

Query: 125 SNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 183
               + + GV  L  +L NL+ L +       +      + + SL  ++I    ++    
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--- 162

Query: 184 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 243
                        +L+++  +  L L  ++ +            + +L LR+ +L     
Sbjct: 163 ---------YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 244 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 290
             L      + +       +     SF     L    L    +  +D
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 51/324 (15%), Positives = 108/324 (33%), Gaps = 44/324 (13%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE--NKAPLAKISLAGT 55
             L  L+L+   ++ L       +SSL+ LNL      ++   +   N   L  + +   
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 56  TFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVA 113
              +E     +   + L+ L++   SL  +    L  ++ + HL L  S           
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 114 CVGANLRNLNLSNTRFSSAGVGILAGH--LPNLEILSLSGTQIDDYAISYMSMMP----- 166
            + +++R L L +T  +      L        ++ L+  G+ + D + + +  +      
Sbjct: 194 IL-SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 167 --SLKFIDISNTDIKGF----------IQQVGAETDLVLSLT----------ALQNLNHL 204
              ++F D +   +  F          + +V   T   L +               L  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ---LSSLSKLTNLSIRDAV 261
           +R+ +E ++V           K L  L L    + +  L       +   L  L +    
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 262 LTN--SGLGSFKPPRSLKLLDLHG 283
           L +           ++L  LD+  
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISR 396

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 29/220 (13%)

Query: 72  LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 127
           L  L +       +    F   + +L  L+L  + +    +   A    + LR L L N 
Sbjct: 101 LEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNN 157

Query: 128 RFSSAGVGILAGHLPNLEILSLSG----TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 183
              S         +P+L  L L        I + A   +    +LK++++   +IK    
Sbjct: 158 PIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGL---FNLKYLNLGMCNIK---- 209

Query: 184 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 243
                      +  L  L  LE L +      +           L  L + N+ ++ +  
Sbjct: 210 ----------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 244 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           +    L+ L  L++    L++     F P R L  L LH 
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 28/176 (15%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFIDIS 174
           +L  L L         VG   G L +L  L L     T I   A  Y+     L+ + + 
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEYL---SKLRELWLR 155

Query: 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ----TQVSDATLFPLSTFKELIH 230
           N  I+             +   A   +  L RL+L +      +S+     L     L +
Sbjct: 156 NNPIE------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---NLKY 200

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286
           L+L   ++    +  L+ L  L  L +          GSF    SLK L +    +
Sbjct: 201 LNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 20/197 (10%)

Query: 88  LTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEI 146
              +K L  L L ++ I    +   A      L  L LS  +       +       L+ 
Sbjct: 72  FKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLSKNQLKE----LPEKMPKTLQE 125

Query: 147 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER 206
           L +   +I     S  + +  +  +++    +              +   A Q +  L  
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPL----------KSSGIENGAFQGMKKLSY 175

Query: 207 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 266
           + +  T ++     P      L  L L    +T V    L  L+ L  L +    ++   
Sbjct: 176 IRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 267 LGSFKPPRSLKLLDLHG 283
            GS      L+ L L+ 
Sbjct: 233 NGSLANTPHLRELHLNN 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 50/312 (16%), Positives = 106/312 (33%), Gaps = 64/312 (20%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
            P  + L+L    +T++      N+ +L  L L N  I  I  G          + A   
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG----------AFAPLV 100

Query: 57  FINEREAFLYIE----TSL-------LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSS 102
            +      LY+       L       L  L V     + + +  F   +  +  ++L ++
Sbjct: 101 KLER----LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTN 155

Query: 103 MIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 161
            +    +E  A  G   L  + +++T  ++    I  G  P+L  L L G +I     + 
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITT----IPQGLPPSLTELHLDGNKITKVDAAS 211

Query: 162 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS--DATL 219
           +  + +L  + +S   I              +   +L N  HL  L+L   ++      L
Sbjct: 212 LKGLNNLAKLGLSFNSISA------------VDNGSLANTPHLRELHLNNNKLVKVPGGL 259

Query: 220 FPLSTFKELIHLSLRNASLTDVS------LHQLSSLSKLTNLSIRDAVLTNSGL--GSFK 271
                 K +  + L N +++ +           +  +  + +S+    +    +   +F+
Sbjct: 260 ADH---KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 272 PPRSLKLLDLHG 283
                  + L  
Sbjct: 317 CVYVRAAVQLGN 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 47/292 (16%), Positives = 97/292 (33%), Gaps = 36/292 (12%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTF 57
              L+ L+   + +T +  I     L  L  ++  I ++ L  N N   L  ++      
Sbjct: 41  LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTN---LTYLACDS--- 94

Query: 58  INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 117
            N+         + L++L+   + L++   ++Q   L +L+ + + + +  V        
Sbjct: 95  -NKLTNLDVTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSHNT---- 148

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177
            L  L+    +  +    +       L  L  S  +I +  +S       L  ++    +
Sbjct: 149 QLTELDCHLNKKITK---LDVTPQTQLTTLDCSFNKITELDVSQN---KLLNRLNCDTNN 202

Query: 178 IKGF-IQQVGAETDLVLS---LTAL--QNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 231
           I    + Q    T L  S   LT +    L  L   +     +++     +ST  +L  L
Sbjct: 203 ITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE---LDVSTLSKLTTL 259

Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
                 L ++    L+  ++L                       L LLD   
Sbjct: 260 HCIQTDLLEID---LTHNTQLIYFQAEG--CRKIKELDVTHNTQLYLLDCQA 306

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 46/254 (18%), Positives = 93/254 (36%), Gaps = 38/254 (14%)

Query: 2   FPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFI 58
             +L++LN     +TKL       L  LN +  T+  I +  N     L ++       I
Sbjct: 105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQ---LTELDCHLNKKI 161

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
            + +       + L+ LD S + ++    ++Q K L  L+  ++ I    +++   +   
Sbjct: 162 TKLDVT---PQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNI--TKLDLNQNI--Q 213

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
           L  L+ S+ + +     I    L  L     S   + +  +S    +  L  +    TD+
Sbjct: 214 LTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDL 266

Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
                         + LT    L + +     + +  D     ++   +L  L  + A +
Sbjct: 267 L------------EIDLTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGI 309

Query: 239 TDVSLHQLSSLSKL 252
           T++ L Q   L  L
Sbjct: 310 TELDLSQNPKLVYL 323

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 37/268 (13%), Positives = 82/268 (30%), Gaps = 65/268 (24%)

Query: 18  LPNISSLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75
              +++L  L+  N +I  +  +E                                L+ L
Sbjct: 38  EEQLATLTSLDCHNSSITDMTGIEKLTG----------------------------LTKL 69

Query: 76  DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 135
             ++++++    L+Q   L +L   S+ + +  V  +      L  LN    + +     
Sbjct: 70  ICTSNNITTL-DLSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTK---- 120

Query: 136 ILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 195
           +     P L  L+ +   + +  +   S    L  +D                    ++ 
Sbjct: 121 LDVSQNPLLTYLNCARNTLTEIDV---SHNTQLTELDCHLNKK--------------ITK 163

Query: 196 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
             +     L  L+    ++++     +S  K L  L+    ++T +    L+   +LT L
Sbjct: 164 LDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFL 217

Query: 256 SIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
                 LT   +        L   D   
Sbjct: 218 DCSSNKLTEIDVTPLT---QLTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 27/270 (10%)

Query: 2   FPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 59
            P L++LN A   +T++   + + L  L+       + L+       L  +  +      
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSFNKITE 184

Query: 60  EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 119
              +       LL+ L+   +++++   L Q   L  LD SS+ +    +++       L
Sbjct: 185 LDVSQN----KLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKL--TEIDVTPLT--QL 235

Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 179
              + S    +     +    L  L  L    T + +  +++ + +   +          
Sbjct: 236 TYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKE- 290

Query: 180 GFIQQVGAETDLVLSLTALQNLN-----HLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
             +        L      +  L+      L  L L  T++++     +S   +L  LS  
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCV 347

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
           NA + D S   +  +  L N    +     
Sbjct: 348 NAHIQDFSS--VGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 2   FPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 59
             +L+FL+ +   +T++    ++ L   + S   +  +     +K  L  +         
Sbjct: 211 NIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSK--LTTLHCIQ----T 264

Query: 60  EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 119
           +         + L +         +   +T    L  LD  ++ I +  +         L
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP----KL 320

Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 179
             L L+NT  +     +   H   L+ LS     I D   S +  +P+L     +     
Sbjct: 321 VYLYLNNTELTE----LDVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI 374

Query: 180 GFIQQVGAETDLVLSL 195
              ++      L +++
Sbjct: 375 TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 23/142 (16%)

Query: 142 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 201
            N      +  ++          + +L  +D  N+ I                +T ++ L
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--------------DMTGIEKL 63

Query: 202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 261
             L +L      ++      LS    L +L+  +  LT++    ++ L+KLT L+     
Sbjct: 64  TGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNK 117

Query: 262 LTNSGLGSFKPPRSLKLLDLHG 283
           LT   +        L  L+   
Sbjct: 118 LTKLDVSQNP---LLTYLNCAR 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 44/266 (16%), Positives = 103/266 (38%), Gaps = 27/266 (10%)

Query: 19  PNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFLDV 77
            N +  +   +++ ++   L      A  + ++ L+G   +++  A      + L  L++
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNL 65

Query: 78  SNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 137
           S++ L     L  +  L  LDL+++ + +        VG ++  L+ +N   S     + 
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQELL------VGPSIETLHAANNNISR----VS 115

Query: 138 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197
                  + + L+  +I             ++++D+   +I             V     
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAEL 164

Query: 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257
             + + LE LNL+   +    +     F +L  L L +  L  +   +  S + +T +S+
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISL 221

Query: 258 RDAVLTNSGLGSFKPPRSLKLLDLHG 283
           R+  L      + +  ++L+  DL G
Sbjct: 222 RNNKLVLIE-KALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 49/292 (16%), Positives = 96/292 (32%), Gaps = 55/292 (18%)

Query: 3   PRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 59
            +L  LNL+   + +  ++   S+L  L+L+N  +  +L G                   
Sbjct: 58  TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS----------------- 100

Query: 60  EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 119
                       +  L  +N+++SR       +  +++ L+++ I         C  + +
Sbjct: 101 ------------IETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCR-SRV 146

Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN---T 176
           + L+L      +     LA     LE L+L    I D  +    +   LK +D+S+    
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLA 204

Query: 177 DIKGFIQQVGAETDLVLS---LT----ALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 229
            +    Q     T + L    L     AL+   +LE  +L        T         L 
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT---------LR 255

Query: 230 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 281
               +N  +  V+   +  L+           L + G    +   +     L
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 18/157 (11%)

Query: 137 LAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK----GFIQQVGAETDLV 192
           +  +    +I  ++ + +     S      ++K +D+S   +       +        L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 193 LS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 246
           LS         L++L+ L  L+L    V +     L     +  L   N +++ VS    
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVS---C 116

Query: 247 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           S      N+ + +  +T            ++ LDL  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 50/287 (17%), Positives = 105/287 (36%), Gaps = 37/287 (12%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTT 56
             +  L + +  +  LP     N+  L  L L    + S+  G  +  P L  +S++   
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN- 151

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 116
            +   E   +  T+ L  L +S++ L+     + + +L H ++S +++   ++ +     
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPI----- 205

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
             +  L+ S+   +     +       L IL L    + D   +++   P L  +D+S  
Sbjct: 206 -AVEELDASHNSINV----VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 258

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
           +++             +       +  LERL +   ++    L+       L  L L + 
Sbjct: 259 ELE------------KIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHN 305

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
            L  V         +L NL +    +    L +     +LK L L  
Sbjct: 306 HLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 62/291 (21%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
                 +    + + KLP     +   +E LNL++  I+ I                   
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI------------------- 84

Query: 57  FINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 113
              +  AF Y     +  L +       L    F   +  L  L L  + +   S+    
Sbjct: 85  ---DTYAFAY--AHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDL--SSLPRGI 136

Query: 114 CVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172
                 L  L++SN                +L+ L LS  ++    +   S++PSL   +
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHVDL---SLIPSLFHAN 192

Query: 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           +S                    L+ L     +E L+     ++           EL  L 
Sbjct: 193 VSYN-----------------LLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILK 232

Query: 233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           L++ +LTD +   L +   L  + +    L       F   + L+ L +  
Sbjct: 233 LQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 51/273 (18%), Positives = 93/273 (34%), Gaps = 57/273 (20%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 57
           P+L+ L+++   + ++        +SL+ L LS+  +  +                    
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL---------------I 185

Query: 58  INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 117
            +            L   +VS + LS          +E LD S + I  + V        
Sbjct: 186 PS------------LFHANVSYNLLSTLAIPIA---VEELDASHNSI--NVVRGPVN--V 226

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN-- 175
            L  L L +   +         + P L  + LS  +++         M  L+ + ISN  
Sbjct: 227 ELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 176 -TDIKGFIQQVGAETDLVLS---LTALQ----NLNHLERLNLEQTQVSDATLFPLSTFKE 227
              +  + Q +     L LS   L  ++      + LE L L+   +       LST   
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHT 340

Query: 228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 260
           L +L+L +      SL  L     +   ++ DA
Sbjct: 341 LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 28/212 (13%)

Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
           +D+    +        +   + +   +S +      ++      +  LNL++ +      
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDT 86

Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 194
              A     ++ L +    I          +P L  + +   D+              L 
Sbjct: 87  YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------------SLP 133

Query: 195 LTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
                N   L  L++      ++ D T    +    L +L L +  LT V L  + SL  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT---SLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
                     ++ + L +   P +++ LD   
Sbjct: 191 AN--------VSYNLLSTLAIPIAVEELDASH 214

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 13/165 (7%)

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
             ++++          G     L N +I++   + +     + +     ++ +++++  I
Sbjct: 23  FYDVHIDMQTQD-VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
           +             +   A    + +++L +    +             L  L L    L
Sbjct: 82  E------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           + +      +  KLT LS+ +  L      +F+   SL+ L L  
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 33/177 (18%), Positives = 71/177 (40%), Gaps = 14/177 (7%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 60
           + P L   N+++  ++ L    ++E L+ S+ +I+ +      +  L  + L     + +
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQH-NNLTD 240

Query: 61  REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
                 +    L  +D+S + L +       +M+ LE L +S++ +   ++         
Sbjct: 241 TAWL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI--PT 296

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
           L+ L+LS+       V         LE L L    I    +   S   +LK + +S+
Sbjct: 297 LKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 12/144 (8%)

Query: 140 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 199
           +      + +     D Y       + + K +   N+ ++             L    L 
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR------------KLPAALLD 66

Query: 200 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
           +   +E LNL   Q+ +   +  +    +  L +   ++  +  H   ++  LT L +  
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 260 AVLTNSGLGSFKPPRSLKLLDLHG 283
             L++   G F     L  L +  
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSN 150

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 27/220 (12%)

Query: 72  LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLS-N 126
              + +     S +    F    + L  L L S+++    ++  A  G A L  L+LS N
Sbjct: 34  SQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDN 90

Query: 127 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 186
            +  S       G L  L  L L    + +        + +L+++ + +  ++       
Sbjct: 91  AQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ------- 142

Query: 187 AETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSL 243
                 L     ++L +L  L L     + V +     L     L  L L    +  V  
Sbjct: 143 -----ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH---SLDRLLLHQNRVAHVHP 194

Query: 244 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           H    L +L  L +    L+     +  P R+L+ L L+ 
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 27/301 (8%), Positives = 84/301 (27%), Gaps = 42/301 (13%)

Query: 18  LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 77
           +  ++ L+ +  +N          + +   +  +                    L+ +++
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-----KDLTDVEL 498

Query: 78  SNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACV--------GANLRNLNLSNT 127
            N         FL  +  L+ L+++ +     +               G  ++   +   
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 187
                        +  L +L     ++    +        L  + +    I+   +   A
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 188 ETDLVLSL-------------TALQNLNHLERLNLEQ---TQVSDATLFPLSTFKE--LI 229
            TD V  L                +++  +  ++                +  +K     
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 230 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-------SGLGSFKPPRSLKLLDLH 282
            ++L    +        ++ S ++ + + + ++T+          G++K    L  +DL 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 283 G 283
            
Sbjct: 737 F 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 29/275 (10%), Positives = 79/275 (28%), Gaps = 29/275 (10%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE--NKAPLAKISLAG- 54
            +L+ L L +  + ++P         +E L  S+  +  I       +   +  +  +  
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 55  --TTFINEREAFLYIETSL-LSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSV 109
              +        +     +  S + +S + + +F          +  + LS++++     
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 110 EMVACVGA------NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 163
             +            L  ++L   + +S      A  LP L  + +S      +      
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-PL 773

Query: 164 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 223
               LK   I +       + +          T +     L +L +    +         
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILR------QWPTGITTCPSLIQLQIGSNDIRK---VDEK 824

Query: 224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 258
              +L  L + +     + +  +    +     + 
Sbjct: 825 LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 45/319 (14%), Positives = 100/319 (31%), Gaps = 53/319 (16%)

Query: 4   RLSFLNLAWTGVTKLP-----NISSLECLNLSNC--TIDSILEGNENKAPLAKISLAGTT 56
           R++ L+LA  G           ++ L+ L+      T+   L G+E   P          
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS-------V 109
            ++ ++ FL  +  L +  D+   +++R   +  +K    + L  + IG+ +        
Sbjct: 384 RMHYKKMFLDYDQRL-NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 110 EMVACVGANLRNLNLSNTRFSSAGVGILA------------------GHLPNLEILSLSG 151
            +       L+ +  +N+ F+   + +                     +L +L  + L  
Sbjct: 443 AIQRLT--KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 152 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL-------NHL 204
                    ++  +P L+ ++I+        Q     T L         +       N+L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
           E      +         L    +L  L   +  +    L    +  KLT+L +    +  
Sbjct: 561 EEFPASAS---------LQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE 609

Query: 265 SGLGSFKPPRSLKLLDLHG 283
                      ++ L    
Sbjct: 610 IPEDFCAFTDQVEGLGFSH 628

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 24/214 (11%)

Query: 87  FLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE 145
            L     +  L L+     G     +       L+ L+      + +G       L    
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLT--ELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 146 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT--------- 196
                      Y   ++     L   D+    I    +    + D  +SL          
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 197 -------ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 249
                  A+Q L  L+ +    +     T   ++   E  +         +      S+L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPF---TYDNIAVDWEDANSDYAK--QYENEELSWSNL 490

Query: 250 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
             LT++ + +                L+ L++  
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 38/273 (13%), Positives = 83/273 (30%), Gaps = 30/273 (10%)

Query: 18  LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTF-INEREAFLYIETSL---- 71
              I +L+ L  +      + + G +   P   +      +    +     + +SL    
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLN 78

Query: 72  LSFLDVSNSSLSRFCFLTQM--KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 129
           L+ + ++    +    +      AL+ ++L+S  +    +  +  V    R L L     
Sbjct: 79  LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138

Query: 130 SSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDIKGF 181
                  L   L      +  L LS   +    ++ +        S+  + + +T +   
Sbjct: 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD- 197

Query: 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF----KELIHLSLRNAS 237
               G E   +L+   L     L+ LN+      D     L+        L  L L    
Sbjct: 198 ---EGLE---LLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 238 LTDVSLHQLSSLSKL--TNLSIRDAVLTNSGLG 268
           L+      L  L         +  ++   + + 
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 16  TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75
            +  N      L+L    I  I    EN                     L         +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVI----EN---------------------LGATLDQFDAI 47

Query: 76  DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGV 134
           D S++ + +      ++ L+ L ++++ I     E +     +L  L L+N        +
Sbjct: 48  DFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDL 106

Query: 135 GILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 172
             LA  L +L  L +     T    Y +  +  +P ++ +D
Sbjct: 107 DPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 140 HLPNLEILSLSGTQIDDYAISYM-SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 198
           +      L L G +I    I  + + +     ID S+ +I+               L   
Sbjct: 17  NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR--------------KLDGF 60

Query: 199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSI 257
             L  L+ L +   ++            +L  L L N SL ++  L  L+SL  LT L I
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 258 RD 259
             
Sbjct: 121 LR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 88  LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLE 145
            T       LDL    I    +E +         ++ S+          L G   L  L+
Sbjct: 15  YTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRLK 67

Query: 146 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 205
            L ++  +I          +P L  + ++N  +                L  L +L  L 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-----------GDLDPLASLKSLT 116

Query: 206 RLNLEQTQVSD 216
            L + +  V++
Sbjct: 117 YLCILRNPVTN 127

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 44/266 (16%), Positives = 105/266 (39%), Gaps = 27/266 (10%)

Query: 19  PNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 77
            N +  +   +++ ++   L    ++   + ++ L+G   +++  A      + L  L++
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNL 65

Query: 78  SNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 137
           S++ L     L  +  L  LDL+++ + +        VG ++  L+ +N   S     + 
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQELL------VGPSIETLHAANNNISR----VS 115

Query: 138 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197
                  + + L+  +I             ++++D+   +I             V     
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAEL 164

Query: 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257
             + + LE LNL+   + D  +     F +L  L L +  L  +   +  S + +T +S+
Sbjct: 165 AASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISL 221

Query: 258 RDAVLTNSGLGSFKPPRSLKLLDLHG 283
           R+  L      + +  ++L+  DL G
Sbjct: 222 RNNKLVLIE-KALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 15/221 (6%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           +  L  +N+++SR       +  +++ L+++ I         C  + ++ L+L      +
Sbjct: 101 IETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDT 158

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN---TDIKGFIQQVGAE 188
                LA     LE L+L    I D  +    +   LK +D+S+     +    Q     
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 189 TDLVLS---LT----ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241
           T + L    L     AL+   +LE  +L        TL    +  + +  ++   ++  +
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQTVKKL 275

Query: 242 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 282
           +       +  T          +          +LK  +  
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 18/157 (11%)

Query: 137 LAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK----GFIQQVGAETDLV 192
           +  +    +I  ++ + +     S      ++K +D+S   +       +        L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 193 LS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 246
           LS         L++L+ L  L+L    V +     L     +  L   N +++ VS    
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVS---C 116

Query: 247 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           S      N+ + +  +T            ++ LDL  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.3 bits (132), Expect = 1e-08
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 21/152 (13%)

Query: 94  LEHLDLSSSMIGDDSVEMVACVGA-NLRNLNL---SNTRFSSAGVGILA-----GHLPNL 144
           L+ L++ S  + D  VE +      NL  L L            + +          PNL
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 145 EILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 201
           + L +   +  +          ++P L+ +DIS     G +   GA     L L  +  +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISA----GVLTDEGAR----LLLDHVDKI 306

Query: 202 NHLERLNLEQTQVSDATLFPL-STFKELIHLS 232
            HL+ +N++   +SD     L  +    I +S
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.2 bits (129), Expect = 3e-08
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 87  FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV-GILAGHLPNLE 145
            L  M  L +L +  +    +++ +      NL++L + +     + V  IL   LPNLE
Sbjct: 167 VLDAMPLLNNLKIKGT----NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 146 ILSLSGTQIDD---------YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 196
            L L     D            +      P+LK++ I + + +           +V    
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ---------NVVVEMFL 273

Query: 197 ALQNLNHLERLNLEQTQVSD----ATLFPLSTFKELIHLSLRNASLTDVSLHQL-SSLSK 251
               L  LE +++    ++D      L  +   K L  ++++   L+D    +L  SL  
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM 333

Query: 252 LTNLSIRD 259
             ++S   
Sbjct: 334 KIDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 8/164 (4%)

Query: 3   PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 62
           P L  L +   G+     +  +   +L N     +  G E+      +++    F  +R 
Sbjct: 193 PNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR- 250

Query: 63  AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA---CVGANL 119
            F  ++   +   +  N  +  F     +  LE +D+S+ ++ D+   ++        +L
Sbjct: 251 -FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 163
           + +N+     S      L   LP    + +S +Q  D   SY  
Sbjct: 310 KFINMKYNYLSDEMKKELQKSLPMK--IDVSDSQEYDDDYSYPM 351

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
           A +R L L N + +   +  L     NLE LSL    +    +S +  +P LK +++S  
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSEN 81

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRN 235
            I G                  + L +L  LNL   ++ D +TL PL   + L  L L N
Sbjct: 82  RIFG------------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 236 ASLTDVSLHQLSSLSKLTNLSIRD 259
             +T+++ ++ S    L  L+  D
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 29/157 (18%)

Query: 20  NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79
             +++  L L NC  +             KI      F+N            L FL + N
Sbjct: 22  TPAAVRELVLDNCKSNDG-----------KIEGLTAEFVN------------LEFLSLIN 58

Query: 80  SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILA 138
             L     L ++  L+ L+LS + I      +   +  NL +LNLS  +    + +  L 
Sbjct: 59  VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLK 117

Query: 139 GHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 172
             L  L+ L L     T ++DY  S   ++P L ++D
Sbjct: 118 -KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 60/301 (19%), Positives = 111/301 (36%), Gaps = 36/301 (11%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGT 55
                 +    + + KLP     +   +E LNL++  I+ I       A  + K+ +   
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF- 108

Query: 56  TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSV 109
             I      ++    LL+ L +     SSL R  F      L  L +S+     I DD+ 
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTF 167

Query: 110 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 169
           +       +L+NL LS+ R +     +    +P+L   ++S        +S +++  +++
Sbjct: 168 QAT----TSLQNLQLSSNRLTH----VDLSLIPSLFHANVSYNL-----LSTLAIPIAVE 214

Query: 170 FIDISNTDIKGFIQQVGAE-TDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPL 222
            +D S+  I      V  E T L L          L N   L  ++L   ++      P 
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 282
              + L  L + N  L  ++L+    +  L  L +    L +      +    L+ L L 
Sbjct: 275 VKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFD-RLENLYLD 332

Query: 283 G 283
            
Sbjct: 333 H 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 30/212 (14%), Positives = 65/212 (30%), Gaps = 28/212 (13%)

Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
           +D+    +        +   + +   +S +      ++      +  LNL++ +      
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDT 92

Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 194
              A     ++ L +    I          +P L  + +   D+              L 
Sbjct: 93  YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------------SLP 139

Query: 195 LTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
                N   L  L++      ++ D T         L +L L +  LT V L  + SL  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVDLSLIPSLFH 196

Query: 252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
                     ++ + L +   P +++ LD   
Sbjct: 197 AN--------VSYNLLSTLAIPIAVEELDASH 220

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 14/176 (7%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61
            P L   N+++  ++ L    ++E L+ S+ +I+ +      +  L  + L     + + 
Sbjct: 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNN-LTDT 247

Query: 62  EAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 119
                +    L  +D+S + L +       +M+ LE L +S++ +   ++         L
Sbjct: 248 AWL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI--PTL 303

Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
           + L+LS+       V         LE L L    I    +   S   +LK + +S+
Sbjct: 304 KVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 13/165 (7%)

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
             ++++          G     L N +I++   + +     + +     ++ +++++  I
Sbjct: 29  FYDVHIDMQT-QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
           +             +   A    + +++L +    +             L  L L    L
Sbjct: 88  E------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           + +      +  KLT LS+ +  L      +F+   SL+ L L  
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 34/223 (15%)

Query: 72  LSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMIGD---DSVEMVACVGANLRNLNLSNT 127
           L  L +SNS ++          +L  LDLS + +         + +C  + L+ LN+S+ 
Sbjct: 79  LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC--SGLKFLNVSSN 136

Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQ 184
                G       L +LE+L LS   I                LK + IS   I G +  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 185 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP-LSTFKELIHLSLRNASLTDVSL 243
                        +    +LE L++     S     P L     L HL +    L+    
Sbjct: 196 -------------VSRCVNLEFLDVSSNNFSTG--IPFLGDCSALQHLDISGNKLSGDFS 240

Query: 244 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---RSLKLLDLHG 283
             +S+ ++L  L+I          G   PP   +SL+ L L  
Sbjct: 241 RAISTCTELKLLNISSNQFV----GPI-PPLPLKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 71/317 (22%), Positives = 117/317 (36%), Gaps = 50/317 (15%)

Query: 2   FPRLSFLNLAWTGVT-KLP--NISSLECLNLSNC----TIDSILEGNENKAPLAKISLAG 54
              L  LN++       +P   + SL+ L+L+       I   L G  +   L  + L+G
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSG 303

Query: 55  TTFINEREAFLYIETSL-----LSFLDVSNSSLSR---FCFLTQMKALEHLDLSSSMIGD 106
             F         +         L  L +S+++ S       L +M+ L+ LDLS +    
Sbjct: 304 NHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 107 DSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYAISYMS 163
           +  E +  + A+L  L+LS+  FS  G     +       L+ L L            +S
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 164 MMPSLKFIDISNTDIKGFI-QQVGAETDL-VLSL----------TALQNLNHLERLNLEQ 211
               L  + +S   + G I   +G+ + L  L L            L  +  LE L L+ 
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 212 TQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN---SG 266
             ++     P  LS    L  +SL N  LT      +  L  L  L + +   +    + 
Sbjct: 476 NDLTGE--IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 267 LGSFKPPRSLKLLDLHG 283
           LG  +   SL  LDL+ 
Sbjct: 534 LGDCR---SLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 58/293 (19%), Positives = 111/293 (37%), Gaps = 62/293 (21%)

Query: 3   PRLSFLNLAWTGVT------KLPNISSLECLNLSNC----TIDSILEGNENKAPLAKISL 52
             L FLN++   +           ++SLE L+LS              ++    L  +++
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 53  AGTTFINEREAFLYIETSLLS---FLDVSNSSLS-RFCFLTQMKALEHLDLSSSMI-GDD 107
           +G     +      ++ S      FLDVS+++ S    FL    AL+HLD+S + + GD 
Sbjct: 186 SGNKISGD------VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 108 SVEMVACVG--------------------ANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147
           S  +  C                       +L+ L+L+  +F+      L+G    L  L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL 207
            LSG         +      L+ + +S+ +  G +            +  L  +  L+ L
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL-----------PMDTLLKMRGLKVL 348

Query: 208 NLEQTQVSD---ATLFPLSTFKELIHLSLRNASLT-----DVSLHQLSSLSKL 252
           +L   + S     +L  LS    L+ L L + + +     ++  +  ++L +L
Sbjct: 349 DLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 57/304 (18%), Positives = 104/304 (34%), Gaps = 66/304 (21%)

Query: 2   FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
              +  L+L+   +T +         +L+ L L++  I++I E                +
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED---------------S 95

Query: 57  FINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSVE 110
           F +            L  LD+S    S+LS   F   + +L  L+L       +G+ S+ 
Sbjct: 96  FSSLGS---------LEHLDLSYNYLSNLSSSWF-KPLSSLTFLNLLGNPYKTLGETSL- 144

Query: 111 MVACVGANLRNLN----LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 166
                 ++L  L      +   F+       AG L  LE L +  + +  Y    +  + 
Sbjct: 145 -----FSHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL--FPLST 224
           ++  + +                  +L    +   + +E L L  T +            
Sbjct: 199 NVSHLILHMKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 225 FKELIHL-SLRNASLTDVSLHQL----SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 279
              LI   + RN  +TD SL Q+    + +S L  L      L +   G F    SL+ +
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 280 DLHG 283
            LH 
Sbjct: 307 WLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 13/170 (7%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177
           NL+ L L++   ++      +  L +LE L LS   + + + S+   + SL F+++    
Sbjct: 77  NLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNA 236
            K  + +           + L  L  L   N++  T++       L+    L  L +  +
Sbjct: 136 YK-TLGETSL-------FSHLTKLQILRVGNMDTFTKIQRKDFAGLT---FLEELEIDAS 184

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286
            L       L S+  +++L +                 S++ L+L    L
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 74  FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 133
            L +++  L+  C L Q+  + HLDLS + +      + A     L  L  S+    +  
Sbjct: 445 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR--CLEVLQASDNALEN-- 500

Query: 134 VGILAG--HLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISN---TDIKGFIQQV 185
              + G  +LP L+ L L   ++    AI  +   P L  +++        +G  +++
Sbjct: 501 ---VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 40/245 (16%), Positives = 85/245 (34%), Gaps = 22/245 (8%)

Query: 12  WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 71
                       L    LS      +    E+   L ++       +      +      
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-ALDP 397

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           L +   +    S    +  M+A    DL S  + ++SV       A++R L+L++   + 
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK--MEYADVRVLHLAHKDLTV 455

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
             +  L   L  +  L LS  ++     + ++ +  L+ +  S+  ++            
Sbjct: 456 --LCHL-EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE------------ 499

Query: 192 VLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 250
             ++  + NL  L+ L L   ++   A + PL +   L+ L+L+  SL      Q     
Sbjct: 500 --NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557

Query: 251 KLTNL 255
            L ++
Sbjct: 558 MLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 70  SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR 128
            L++ LD+S++ L      L  ++ LE L  S + +  ++V+ VA +   L+ L L N R
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVDGVANL-PRLQELLLCNNR 519

Query: 129 FSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 172
              +         P L +L+L G    Q +        M+PS+  I 
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 116 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
           GA +R       +     +         ++ +  + + I      +M  +  ++ I +  
Sbjct: 35  GAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK 94

Query: 176 TDIKGFIQQVGAETDLVLS-LTALQNLNH-LERLNLEQ-TQVSDATLFPLSTFKELIHLS 232
                    +    D  L  L+ L+NL   +  + +     V+D  +  L  F+ L +L 
Sbjct: 95  CH------YI---EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLF 145

Query: 233 LRNAS-LTDVSLHQLSSLSKLTNLSIR 258
           L +   + +      +  + L +L ++
Sbjct: 146 LSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFK 226
           ++ ID +++ I                   ++ L ++E++ L +   + D  L  LS  +
Sbjct: 63  IQAIDATDSCIMSIGFDH------------MEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 227 E----LIHLSLRN-ASLTDVSLHQLSSLSKLTNLSIRD-AVLTNSGLGSFKPPRSLKLLD 280
                ++ + + +  ++TD  +  L     L  L + D   +            SL  L+
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170

Query: 281 LH 282
           L 
Sbjct: 171 LK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN-ASLTDVSLHQLSSLSK 251
           L    L     ++ ++   + +       +   + +  + L     + D  L +LS L  
Sbjct: 53  LPTGPLDKYK-IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN 111

Query: 252 ----LTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLT--EDAILQFCKMHPRIEV 304
               +  + I     +T+ G+ +    R+LK L L     +   E  +  F    P +E+
Sbjct: 112 LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 38/251 (15%), Positives = 67/251 (26%), Gaps = 35/251 (13%)

Query: 1   MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN--ENKAPLAKISLA 53
           +      L    T +  +          LE + +S   +  ++E +   N   L +I + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 54  GTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS----SMIGD 106
               +       +     L +L +SN     L     +        LD+        I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIER 146

Query: 107 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 166
           +S      +      L L+             G     E+       +++          
Sbjct: 147 NSF---VGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 226
               +DIS T I              L    L+NL  L   +    +     L  L    
Sbjct: 203 GPVILDISRTRIH------------SLPSYGLENLKKLRARSTYNLK----KLPTLEKLV 246

Query: 227 ELIHLSLRNAS 237
            L+  SL   S
Sbjct: 247 ALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 30/209 (14%), Positives = 63/209 (30%), Gaps = 23/209 (11%)

Query: 80  SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT-RFSSAGVGIL 137
             + +  F +    LE +++S + +  + +E         L  + +              
Sbjct: 43  RVIQKGAF-SGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 138 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS-NTDIKGFIQQVGAETDLVLSLT 196
              LPNL+ L +S T I      +         +DI  N +I              +   
Sbjct: 101 QN-LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------TIERN 147

Query: 197 ALQNL-NHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 253
           +   L      L L +  + +   + F  +   EL      N +L ++        S   
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL--NLSDNNNLEELPNDVFHGASGPV 205

Query: 254 NLSIRDAVLTNSGLGSFKPPRSLKLLDLH 282
            L I    + +      +  + L+    +
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTY 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 18/122 (14%)

Query: 166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 225
            +   +    T ++            V+   A      LE++ + Q  V    +     F
Sbjct: 30  RNAIELRFVLTKLR------------VIQKGAFSGFGDLEKIEISQNDVL--EVIEADVF 75

Query: 226 ---KELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 281
               +L  + +  A +L  ++     +L  L  L I +  + +             LLD+
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 282 HG 283
             
Sbjct: 136 QD 137

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 29/157 (18%)

Query: 20  NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79
             S ++ L L N   +             K+      F              L FL   N
Sbjct: 15  TPSDVKELVLDNSRSNEG-----------KLEGLTDEFEE------------LEFLSTIN 51

Query: 80  SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILA 138
             L+    L ++  L+ L+LS + +    +E++A    NL +LNLS  +    + +  L 
Sbjct: 52  VGLTSIANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110

Query: 139 GHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 172
             L NL+ L L     T ++DY  +   ++P L ++D
Sbjct: 111 K-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 15/120 (12%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
           ++++ L L N+R +   +  L      LE LS     +    I+ +  +  LK +++S+ 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELSDN 74

Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRN 235
            + G                  +   +L  LNL   ++ D +T+ PL   + L  L L N
Sbjct: 75  RVSG------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 21/181 (11%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN- 175
            +   L+LS     +  +  L      L  L+L   ++    +     +P L  +D+S+ 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHN 87

Query: 176 --TDIKGFIQQVGAETDLVLS---LTAL-----QNLNHLERLNLEQTQVSDATLFPLSTF 225
               +    Q + A T L +S   LT+L     + L  L+ L L+  ++      P    
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL---KTLPPGLL 144

Query: 226 K---ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 282
               +L  LSL N +LT++    L+ L  L  L +++  L     G F     L    LH
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLH 203

Query: 283 G 283
           G
Sbjct: 204 G 204

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 35/270 (12%), Positives = 90/270 (33%), Gaps = 31/270 (11%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTT 56
              +     ++  + +L   +++   ++SN  +         + +        I    + 
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVA 113
                ++++Y   S ++  + + S        C  +++    HLD S++++ D   E   
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCG 345

Query: 114 CVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFI 171
            +   L  L L   +    + +  +   + +L+ L +S   +  D      S   SL  +
Sbjct: 346 HLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 172 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK--ELI 229
           ++S+  +                         ++ L+L   ++      P    K   L 
Sbjct: 405 NMSSNILT--------------DTIFRCLPPRIKVLDLHSNKIKS---IPKQVVKLEALQ 447

Query: 230 HLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
            L++ +  L  V       L+ L  + +  
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 47/300 (15%), Positives = 95/300 (31%), Gaps = 25/300 (8%)

Query: 2   FPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEG---NENKAPLAKISL 52
              L  L+L++     LP      N+S L+ L LS   ++        + N + +  +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 53  AGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVE 110
                  + E      T  L  +  +N          +  +  LE  ++   +  +    
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 111 MV-----ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 165
            +           L NL L+N   +      +   + +  +   S + +       +   
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK------LQGQ 262

Query: 166 PSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 224
              +  D S T +K   I QV ++          +  +++   N   +      +   S 
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLH 282
               +HL   N  LTD        L++L  L ++   L             +SL+ LD+ 
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 30/199 (15%)

Query: 72  LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSS---SMIGDDSVEMVACVGANLRNLN 123
           L  L +S++ +       F F  +   LE+LDLS      I             NL++L+
Sbjct: 47  LRILIISHNRIQYLDISVFKFNQE---LEYLDLSHNKLVKISCHPTV-------NLKHLD 96

Query: 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 183
           LS   F +  +    G++  L+ L LS T +                + I++ +I   + 
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHL-----------EKSSVLPIAHLNISKVLL 145

Query: 184 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 243
            +G           LQ+ N    L++      +       + K + +L L N        
Sbjct: 146 VLGETYGEKEDPEGLQDFNTE-SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 244 HQLSSLSKLTNLSIRDAVL 262
                LS L  L     + 
Sbjct: 205 KCSYFLSILAKLQTNPKLS 223

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 21/230 (9%)

Query: 2   FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS------LAGT 55
                  +    G  ++  IS L+ L L N  +         +A    ++      ++  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 56  TFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMV 112
           T               L  L ++ +    F    +    AL  LDLS    +G+  +   
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 113 ACVGA--NLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPS 167
            C      L+ L L N    +       LA     L+ L LS   + D            
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 168 LKFIDISNTDIKGFIQQVGAE-TDLVLS------LTALQNLNHLERLNLE 210
           L  +++S T +K   + + A+ + L LS        +   L  +  L+L+
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLK 304

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 70  SLLSFLDVSNSSLSRFCFLTQMKA--LEHLDLSSSMIGDDSVEMVACV--GANLRNLNLS 125
           SL   L   ++      F   +K+  L+ L + ++ I    +     V   + L+ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 126 NTRFSSAG-VGILAGHLPNLEILSLS----GTQIDDYAISYMSMMPSLKFIDISNTDIKG 180
           N   +      +L    P+L IL+L      T+    A     + P LK + I+      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-- 161

Query: 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS----TFKELIHLSLRNA 236
                     L  S   ++    L  L+L             +     F  L  L+LRNA
Sbjct: 162 ----------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 237 SLTDVSLHQLSSLSKLTNLSIRDA---VLTNS-GLGSFKPPRSLKLLDL 281
            +   S    +  +    L   D     L ++ G  S   P  L  L+L
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 22/167 (13%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLA---- 53
           P L  L++A                +L  L+LS+              PL   +L     
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 54  ---GTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDD 107
              G    +   + L      L  LD+S++SL              L  L+LS + +   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--- 265

Query: 108 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 154
             ++   + A L  L+LS  R            LP +  LSL G   
Sbjct: 266 -KQVPKGLPAKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPF 308

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 32/269 (11%), Positives = 79/269 (29%), Gaps = 45/269 (16%)

Query: 3   PRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 56
            ++  L+ A   +  +P      ++S +  ++ S   I S+   N +             
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG---- 432

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC 114
                          +S +++SN+ +S+F     +    L  ++L  +M+ +     +  
Sbjct: 433 -------------INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 115 VGA------NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPS 167
                     L +++L   + +       A  LP L  + LS          +      +
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSST 537

Query: 168 LKFIDISNTDIKGFIQQVGAETDLVLSL-TALQNLNHLERLNLEQTQVSDATLFPLSTFK 226
           LK   I N       + +             +     L +L +    +            
Sbjct: 538 LKGFGIRNQRDAQGNRTLR-------EWPEGITLCPSLTQLQIGSNDIRK---VNEKITP 587

Query: 227 ELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
            +  L +++     + L  +    +    
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 34/320 (10%), Positives = 93/320 (29%), Gaps = 46/320 (14%)

Query: 4   RLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 59
           + + +      +T +      ++ L    + N    +     E                +
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTED 242

Query: 60  EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSS-------SMIGDDSVE 110
            +   L      L+ ++V N         FL  +  ++ ++++         +  D    
Sbjct: 243 LKWDNL----KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 111 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 170
             A VG  ++ + +      +  V      +  L +L     Q++   +        L  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLAS 357

Query: 171 IDISNTDIKGFIQQVGAE----TDLVLS---------LTALQNLNHLERLNLEQ---TQV 214
           ++++   I               +L  +         +   ++++ +  ++        V
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 215 SDATLFPLST----FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD-------AVLT 263
                 PL         +  ++L N  ++       S+ S L+++++             
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 264 NSGLGSFKPPRSLKLLDLHG 283
                +FK    L  +DL  
Sbjct: 478 KDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 33/291 (11%), Positives = 80/291 (27%), Gaps = 34/291 (11%)

Query: 20  NISSLECLNLSN-----CTIDSILEGNENKAPLAKISLAGTTFINEREAFL-YIETSLLS 73
            ++ LE L L +            +G        +       +      +    + S L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 74  FLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
              +++    +              +   S+ I   S  ++      LR   + N+ F +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT--KLRQFYMGNSPFVA 220

Query: 132 AGVGILA------------------GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 173
             +                       +L +L  + +          +++  +P ++ I++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 174 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP-LSTFKELIHLS 232
           +        Q      D   +L        ++ + +    +    +   L   K+L  L 
Sbjct: 281 ACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
                L    L    S  KL +L++    +T            ++ L    
Sbjct: 337 CLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)

Query: 88  LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147
           L+ +KA +HL LS++ I  + +  ++ +  NLR L+L         +  L      LE L
Sbjct: 44  LSTLKACKHLALSTNNI--EKISSLSGM-ENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL 207
            +S  QI    +S +  + +L+ + +SN  I  +             +  L  L+ LE L
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW-----------GEIDKLAALDKLEDL 145

Query: 208 NLE 210
            L 
Sbjct: 146 LLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 140 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 199
            L   + L+LS   I+   IS +S M +L+ + +    IK               +  L 
Sbjct: 46  TLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIK--------------KIENLD 89

Query: 200 NL-NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSI 257
            + + LE L +   Q++   L  +     L  L + N  +T+   + +L++L KL +L +
Sbjct: 90  AVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 46/181 (25%)

Query: 8   LNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA 63
           L+     + K    L  + + + L LS   I+ I     + + +                
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----SSLSGMEN-------------- 71

Query: 64  FLYIETSLLSFLDVSNSSLSRFCFLTQM-KALEHLDLSSSMIGDDSVEMVACVGANLRNL 122
                   L  L +  + + +   L  +   LE L +S + I   S+  +  +  NLR L
Sbjct: 72  --------LRILSLGRNLIKKIENLDAVADTLEELWISYNQI--ASLSGIEKL-VNLRVL 120

Query: 123 NLSNTRFSS-AGVGILAGHLPNLEILSLSG----------TQIDDYAISYMSMMPSLKFI 171
            +SN + ++   +  LA  L  LE L L+G              +Y I  +  +P+LK +
Sbjct: 121 YMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 172 D 172
           D
Sbjct: 180 D 180

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 61/289 (21%)

Query: 3   PRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 59
           P L +L ++   + KLP +   S L+ +++ N ++  + +   +                
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS---------------- 174

Query: 60  EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 119
                       L F+   N+ L     L  +  L  +   ++ +       +     +L
Sbjct: 175 ------------LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL-----SL 217

Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 179
            ++   N       +  L  +LP L  +      +     +   + PSL+ +++ +  + 
Sbjct: 218 ESIVAGNNILEE--LPEL-QNLPFLTTIYADNNLL----KTLPDLPPSLEALNVRDNYLT 270

Query: 180 GFIQQVGAETDLVLSLTALQNL----NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 235
              +   + T L +S      L     +L  LN    ++      P S    L  L++ N
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS----LEELNVSN 326

Query: 236 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-PRSLKLLDLHG 283
             L ++     +   +L  L       + + L      P++LK L +  
Sbjct: 327 NKLIELP----ALPPRLERLI-----ASFNHLAEVPELPQNLKQLHVEY 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 54/291 (18%), Positives = 100/291 (34%), Gaps = 44/291 (15%)

Query: 3   PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT--TFI 58
                       V++L +        L L+N  + S+ E   +   L  +  +    T +
Sbjct: 50  APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTEL 106

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
            E           L  L V N++L     L     LE+L +S++ +     E+       
Sbjct: 107 PE-------LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-ELQNSS--F 154

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
           L+ +++ N          L    P+LE ++    Q+++  +  +  +P L  I   N  +
Sbjct: 155 LKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSL 207

Query: 179 KGFIQQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232
           K       +   +V        L  LQNL  L  +  +   +      P      L  L+
Sbjct: 208 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT---LP-DLPPSLEALN 263

Query: 233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           +R+  LTD+      SL+ L       + L+         P +L  L+   
Sbjct: 264 VRDNYLTDLP-ELPQSLTFLDVSENIFSGLSEL-------PPNLYYLNASS 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 62/289 (21%)

Query: 2   FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI 58
            P L F+      + +LP +     L  +   N ++  + +   +               
Sbjct: 172 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS--------------- 216

Query: 59  NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118
                        L  +   N+ L     L  +  L  +   ++++     + +  +  +
Sbjct: 217 -------------LESIVAGNNILEELPELQNLPFLTTIYADNNLL-----KTLPDLPPS 258

Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
           L  LN+ +   +   +  L   L  L++     + + +         P+L +++ S+ +I
Sbjct: 259 LEALNVRDNYLTD--LPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEI 309

Query: 179 KGFIQQVGAETDLVLS---LTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234
           +       +  +L +S   L  L      LERL      +++    P    + L  L + 
Sbjct: 310 RSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE---VP-ELPQNLKQLHVE 365

Query: 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
              L +           + +L      + +      + P++LK L +  
Sbjct: 366 YNPLREFP----DIPESVEDLR-----MNSHLAEVPELPQNLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 42/246 (17%)

Query: 57  FINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGD--------- 106
           FIN R     +  + L      +S+L+        +K+      + S             
Sbjct: 2   FINPRN----VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ 57

Query: 107 ---DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 163
                  +  C+      L L+N   SS     L    P+LE L  S   + +       
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSS-----LPELPPHLESLVASCNSLTELP-ELPQ 111

Query: 164 MMPSLKFIDISNTDIKGFIQQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDA 217
            + SL   + +   +      +     L +S      L  LQN + L+ ++++   +   
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLL---EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK- 167

Query: 218 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 277
              P      L  ++  N  L    L +L +L  LT +   +  L          P SL+
Sbjct: 168 --LP-DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK----LPDLPLSLE 218

Query: 278 LLDLHG 283
            +    
Sbjct: 219 SIVAGN 224

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 65/311 (20%), Positives = 103/311 (33%), Gaps = 39/311 (12%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS-ILEGN--ENKAPLAKISLAG 54
             L  L L +    +L       +++LE L L+ C +D  +L GN  +    L  + L  
Sbjct: 79  SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 55  T--TFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT----QMKALEHLDLSSSMIGD-- 106
                I     FL +       LD++ + +   C       Q K    L LSS  + D  
Sbjct: 139 NNIKKIQPASFFLNM--RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 107 -----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 161
                           ++  L+LS   F  +        +   +I SL  +   +   S 
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS- 255

Query: 162 MSMMPSLKFIDISNTDIKGFIQQVGAETDL------VLSLTALQNLNHLERLNLEQTQVS 215
                   F D  N   KG         DL       L  +   +   LE+L L Q +++
Sbjct: 256 ---FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 216 DATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 272
                  + F     L+ L+L    L  +      +L KL  L +    +   G  SF  
Sbjct: 313 K---IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

Query: 273 PRSLKLLDLHG 283
             +LK L L  
Sbjct: 370 LPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 51/288 (17%)

Query: 3   PRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEG---NENKAPLAKISLA 53
             L  L L    + K+       N+     L+L+   + SI E    N        + L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 54  GTTF-------INEREAFLYIETSLLSFLDVSNSSLS-----RFCFLTQMKALEHLDLSS 101
             T        +   +     + + ++ LD+S +        RF        ++ L LS+
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 102 SMIGDDSV------EMVACV-----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 150
           S     S       +           + ++  +LS ++  +    + + H  +LE L+L+
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLA 307

Query: 151 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 210
             +I+    +    +  L  +++S   +              +     +NL+ LE L+L 
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGS------------IDSRMFENLDKLEVLDLS 355

Query: 211 QTQVSDATLFPLSTFK---ELIHLSLRNASLTDVSLHQLSSLSKLTNL 255
              +         +F     L  L+L    L  V       L+ L  +
Sbjct: 356 YNHIRA---LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 38/293 (12%), Positives = 81/293 (27%), Gaps = 28/293 (9%)

Query: 14  GVTKLPNI-SSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSL 71
           G+ ++P + + +  ++LS  +I  + E +      L  + +   T         +   S 
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 72  LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLS 125
           L  L +  +   +     F  L     LE L L+   +    +         +L  L L 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLAN---LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 126 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQV 185
           +             ++    +L L+  ++       +       F  +  + I   +Q +
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT--LQDM 195

Query: 186 GAETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVS 242
                             +  L+L      +      F      ++  L L N+     S
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 243 LH--QLSSLSKLTNLSIRDAVLTNSGL----------GSFKPPRSLKLLDLHG 283
                       T   +  + +    L            F     L+ L L  
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 59/394 (14%), Positives = 112/394 (28%), Gaps = 143/394 (36%)

Query: 34  IDSILEGN----------ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 83
           ++ +L  N          E + P    S+    +I +R+  LY +  + +  +VS     
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDR-LYNDNQVFAKYNVS----- 132

Query: 84  RFCFLTQMK-ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG--ILAGH 140
           R     +++ AL  L            + V   G                G G   +A  
Sbjct: 133 RLQPYLKLRQALLELR---------PAKNVLIDGV--------------LGSGKTWVA-- 167

Query: 141 LPNLEILSLSGTQIDDYAISYMSMMPSLKF-IDISNTDIKGFIQQVGAETDLVLSLTALQ 199
              L++          Y +     M    F +++ N +            + VL +  LQ
Sbjct: 168 ---LDVCL-------SYKV--QCKMDFKIFWLNLKNCN----------SPETVLEM--LQ 203

Query: 200 NLNHL--------------ERLNLEQTQVSDATLFPLSTFKE-LIHLS------------ 232
            L +                +L +   Q     L     ++  L+ L             
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 233 -----L---RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 284
                L   R   +TD           L+  +     L +  +    P     LL     
Sbjct: 264 LSCKILLTTRFKQVTDF----------LSAATTTHISLDHHSMT-LTPDEVKSLLLK--- 309

Query: 285 WLLTEDAIL--QFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASLVKQKQDPM 341
           +L      L  +    +PR      LS+I  S + G      +     +     +    +
Sbjct: 310 YLDCRPQDLPREVLTTNPRR-----LSIIAESIRDG-----LATWDNWKHVNCDKLTTII 359

Query: 342 PMSHSFLDQRLKYSREELLELQYSSLSLARPDDS 375
             S + L+        E  ++ +  LS+  P  +
Sbjct: 360 ESSLNVLEP------AEYRKM-FDRLSVF-PPSA 385

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 46/233 (19%), Positives = 77/233 (33%), Gaps = 41/233 (17%)

Query: 70  SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 127
           +  + L+V  S L+    C       +  L +  + +              LR L +S  
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALP-----PELRTLEVSGN 91

Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYA-------------ISYMSMMPSLKFIDIS 174
           + +S  V      L  L I S   T +                  S   + P L+ + +S
Sbjct: 92  QLTSLPVLP--PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149

Query: 175 NTDIKGFIQQVGAETDLVLS---LTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIH 230
           +  +            L      LT+L    + L+ L++   Q++     P +   EL  
Sbjct: 150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS---LP-TLPSELYK 205

Query: 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
           L   N  LT +     +  S L  L +    LT+  L     P  LK L + G
Sbjct: 206 LWAYNNRLTSLP----ALPSGLKELIVSGNRLTS--LPVL--PSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 55/259 (21%)

Query: 5   LSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA 63
           L  L +    +T LP     L+ L++S+  + S+                          
Sbjct: 123 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSE-------------------- 162

Query: 64  FLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 123
                   L  L   N+ L+          L+ L +S + +            + L  L 
Sbjct: 163 --------LCKLWAYNNQLTS--LPMLPSGLQELSVSDNQLASLPTLP-----SELYKLW 207

Query: 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 183
             N R +S     L      L+ L +SG ++     S   +   LK + +S   +     
Sbjct: 208 AYNNRLTS-----LPALPSGLKELIVSGNRL----TSLPVLPSELKELMVSGNRLTSLPM 258

Query: 184 QVGAETDLVLS---LTAL----QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236
                  L +    LT L     +L+    +NLE   +S+     L   +E+      + 
Sbjct: 259 LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE---RTLQALREITSAPGYSG 315

Query: 237 SLTDVSLHQLSSLSKLTNL 255
            +    +   S+  +   L
Sbjct: 316 PIIRFDMAGASAPRETRAL 334

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 26/199 (13%)

Query: 93  ALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 151
            L+ LDLS   I   ++E  A    ++L  L L+     S  +G  +G L +L+ L    
Sbjct: 53  ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVE 109

Query: 152 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 211
           T +       +  + +LK +++++  I+   +                NL +LE L+L  
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY----------FSNLTNLEHLDLSS 158

Query: 212 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-------KLTNLSIRDAVLTN 264
            ++        +  + L  + L N SL D+SL+ ++ +        +L  L++    L +
Sbjct: 159 NKI---QSIYCTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214

Query: 265 SGLGSFKPPRSLKLLDLHG 283
              G F    SL+ + LH 
Sbjct: 215 VPDGIFDRLTSLQKIWLHT 233

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 34/272 (12%), Positives = 78/272 (28%), Gaps = 33/272 (12%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGN-----ENKAPLAKISLAGT 55
               +         + +      +E LN+ N TI   ++       E       I     
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314

Query: 56  TFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMV 112
                 +  LY   + ++   +S S        C      +   L+ + ++  D   +  
Sbjct: 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY----AISYMSMMPSL 168
           + +   L+ L L      +     +A    N+  L      ++           +   S+
Sbjct: 374 STL-KRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 169 KFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NLNHLERLNLEQTQVSDATLFPLSTFKE 227
             +++S+  +            L   +  L  + N +  +           +  L     
Sbjct: 431 LVLNLSSNML-----TGSVFRCLPPKVKVLDLHNNRIMSI--------PKDVTHLQ---A 474

Query: 228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
           L  L++ +  L  V       L+ L  + + D
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 49/241 (20%), Positives = 81/241 (33%), Gaps = 40/241 (16%)

Query: 72  LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSS---SMIGDDSVEMVACVGANLRNLN 123
           L  L +S++ +       F F      LE+LD+S      I    +        +LR+L+
Sbjct: 78  LRVLRLSHNRIRSLDFHVFLFNQD---LEYLDVSHNRLQNISCCPMA-------SLRHLD 127

Query: 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQI-----DDYA-ISYMSMMPSLKFIDISNTD 177
           LS   F    V    G+L  L  L LS  +         A +    ++  L    I   +
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 178 IKGFIQQVGAETDLVLS---------LTALQNLNHLE----RLNLEQTQVSDATLFPLST 224
            +           LV             ++  L HL+    +LN E  Q     L  L+ 
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 225 FKELIHLSLRNASLTD---VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 281
              L++++L++   T    V L Q      +  L+I +  +T              L  L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 282 H 282
            
Sbjct: 308 M 308

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 19/182 (10%)

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
           A+ + L+L + + SS         L  L +L L+  ++          + +L+ + +++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 177 DIK----GFIQQVGAETDLVLS---LTALQ-----NLNHLERLNLEQTQVSDATLFPLST 224
            ++    G   Q+    +L L    L +L      +L  L  L+L   ++      P   
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL---QSLPKGV 152

Query: 225 F---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 281
           F     L  L L N  L  V       L++L  L + +  L     G+F     LK+L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 282 HG 283
             
Sbjct: 213 QE 214

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 80  SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-----NLRNLNLSNTRFSSAGV 134
           S L      T++  L  L LS + +  + +       A     NLR L+LS+    +   
Sbjct: 52  SRLRAEWTPTRLTNLHSLLLSHNHL--NFIS----SEAFVPVPNLRYLDLSSNHLHTLDE 105

Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 194
            + +  L  LE+L L    I     +    M  L+ + +S   I  F  ++         
Sbjct: 106 FLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--------- 155

Query: 195 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240
           +     L  L  L+L   ++      PL+  ++L         L +
Sbjct: 156 IKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVKNGLYLHN 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 37/283 (13%)

Query: 20  NISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78
           + S  E L     T +    +                     +       ++       +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRT 64

Query: 79  NSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 135
             +L                 L+L S  +     +       +L+++ +           
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS--HLQHMTIDAAGLMELPDT 122

Query: 136 ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 193
           +       LE L+L+   +     +I+ ++    L+ + I        + ++        
Sbjct: 123 M--QQFAGLETLTLARNPLRALPASIASLN---RLRELSIRACPE---LTELPEPLASTD 174

Query: 194 SLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
           +    Q L +L+ L LE T +      P  ++  + L  L +RN+ L+ +    +  L K
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPK 230

Query: 252 LTNLSIRDAVLTNSGLGSFKPP-----RSLKLLDLHGGWLLTE 289
           L  L +R      + L ++ PP       LK L L     L  
Sbjct: 231 LEELDLRG----CTALRNY-PPIFGGRAPLKRLILKDCSNLLT 268

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 190 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK---ELIHLSLRNASLTDVSLHQL 246
             + SL  L    +L  L +E  Q        L   +   EL +L++  + L  V+    
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 247 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
               +L+ L++    L +    + +   SL+ L L G
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 35/271 (12%), Positives = 86/271 (31%), Gaps = 29/271 (10%)

Query: 1   MFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT--TF 57
           + P+++ L +    +  LP   +SLE L+  +  + ++ E   +   L  + +     T 
Sbjct: 78  LPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPAS---LKHLDVDNNQLTM 134

Query: 58  INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 117
           + E         +LL +++  N+ L+         +LE L + ++ +             
Sbjct: 135 LPE-------LPALLEYINADNNQLTM--LPELPTSLEVLSVRNNQLTFLPELP-----E 180

Query: 118 NLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
           +L  L++S     S  A                    +I     + +  +     I + +
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILED 239

Query: 176 ----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 231
               + I+  + Q  A+ D           +  +         +    FP +   ++  +
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 232 --SLRNASLTDVSLHQLSSLSKLTNLSIRDA 260
             +  +    +     L  LS   +      
Sbjct: 300 WHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 106 DDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPN---LEILSLSGTQIDDYAISY 161
           +  +  +     +L+ +N++N  R S   +  L     N   +E  SL+ T I D     
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89

Query: 162 MSMM----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 217
           +  +    PSL+ +++ +  +            L+ S    Q++   +  N  Q+ + + 
Sbjct: 90  LIELIETSPSLRVLNVESNFLTP----ELLAR-LLRSTLVTQSIVEFKADNQRQSVLGNQ 144

Query: 218 TLFPLSTFKELIHLSLRNASLTDVSLH 244
                    +++     N SL  V + 
Sbjct: 145 VE------MDMMMAIEENESLLRVGIS 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.98
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-40  Score=336.33  Aligned_cols=270  Identities=24%  Similarity=0.277  Sum_probs=177.9

Q ss_pred             CCCCcEEEccCCCCCC-CC--CCCCCcEEEccCCCch-hHHhhCcC-CCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            2 FPRLSFLNLAWTGVTK-LP--NISSLECLNLSNCTID-SILEGNEN-KAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~-l~--~~~~L~~L~ls~n~i~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++|++|++++|.+.+ ++  .+++|++|++++|.++ .+|..++. +++|++|++++|.+++..+. .|.++++|++|+
T Consensus       246 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~  324 (768)
T 3rgz_A          246 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLA  324 (768)
T ss_dssp             CSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEE
Confidence            5677888888877653 22  5667777777777776 46666654 37777777777776644332 245677777777


Q ss_pred             eecCCCCC-cc--cccCCCCccEEEeeCCCCCchhHHHHHhccC-CccEEEccCCCCC----------------------
Q 016686           77 VSNSSLSR-FC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFS----------------------  130 (384)
Q Consensus        77 ls~n~l~~-~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~----------------------  130 (384)
                      +++|.+.+ ++  .+..+++|++|++++|.+.+..|..+..+ + +|+.|++++|.++                      
T Consensus       325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH-TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred             CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh-hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence            77776652 22  36666777777777776665555555554 3 5555555555443                      


Q ss_pred             ----chHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCE
Q 016686          131 ----SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER  206 (384)
Q Consensus       131 ----~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  206 (384)
                          +..+..+ +.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|.            .+..+++|+.
T Consensus       404 n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------~~~~l~~L~~  470 (768)
T 3rgz_A          404 NGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------------ELMYVKTLET  470 (768)
T ss_dssp             SEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCE
T ss_pred             CccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH------------HHcCCCCceE
Confidence                3333332 3455555555555555555555555556666666666665555554            5667777788


Q ss_pred             EEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          207 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       207 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      |++++|.+++..|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus       471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            88888877777777777788888888888888777777777788888888888888777777777778888888888776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-40  Score=334.65  Aligned_cols=344  Identities=19%  Similarity=0.178  Sum_probs=278.5

Q ss_pred             CCCCcEEEccCCCCC-CCC----C-CCCCcEEEccCCCch-hHHhhCcCCCCccEEeccCCCCC-chhHHhhhcCCCCcc
Q 016686            2 FPRLSFLNLAWTGVT-KLP----N-ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFI-NEREAFLYIETSLLS   73 (384)
Q Consensus         2 l~~L~~L~l~~n~i~-~l~----~-~~~L~~L~ls~n~i~-~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~   73 (384)
                      +++|++|++++|.++ .++    . +++|++|++++|.++ .+|..+..+++|++|++++|.++ .++.. .+.++++|+
T Consensus       268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~  346 (768)
T 3rgz_A          268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-TLLKMRGLK  346 (768)
T ss_dssp             CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-HHTTCTTCC
T ss_pred             cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-HHhcCCCCC
Confidence            567788888877765 333    2 477777777777776 45566667777777777777776 34433 245667777


Q ss_pred             EEEeecCCCCCc---------------------------ccccC--CCCccEEEeeCCCCCchhHHHHHhccCCccEEEc
Q 016686           74 FLDVSNSSLSRF---------------------------CFLTQ--MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  124 (384)
Q Consensus        74 ~L~ls~n~l~~~---------------------------~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  124 (384)
                      +|++++|.+.+.                           +.+..  +++|++|++++|.+++..|..+..+ ++|+.|++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L  425 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHL  425 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEEC
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEEC
Confidence            777776655311                           11222  5678888888888888888888888 99999999


Q ss_pred             cCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCC
Q 016686          125 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL  204 (384)
Q Consensus       125 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L  204 (384)
                      ++|.+++..+..+ +.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.            .+..+++|
T Consensus       426 s~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~------------~l~~l~~L  492 (768)
T 3rgz_A          426 SFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS------------GLSNCTNL  492 (768)
T ss_dssp             CSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTC
T ss_pred             cCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH------------HHhcCCCC
Confidence            9999987777665 6799999999999999988888999999999999999999988887            68899999


Q ss_pred             CEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccc--------------
Q 016686          205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF--------------  270 (384)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--------------  270 (384)
                      +.|++++|++++..|..++.+++|++|++++|.+++.+|..++.+++|+.|++++|++++..|..+              
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            999999999999999999999999999999999999999999999999999999999886655432              


Q ss_pred             --------------------------------------------------------cCCCCCCEEEccCCcCCCHHHHHH
Q 016686          271 --------------------------------------------------------KPPRSLKLLDLHGGWLLTEDAILQ  294 (384)
Q Consensus       271 --------------------------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~  294 (384)
                                                                              ..+++|+.|++++|++. +..+. 
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~-  650 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPK-  650 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCG-
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCH-
Confidence                                                                    23467899999999983 22222 


Q ss_pred             HHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686          295 FCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS  368 (384)
Q Consensus       295 ~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~  368 (384)
                      ....++.++       .+++++|.++|.+|+.++.++.+      .|+++|.+|+.+      ..+++|+.||+++|+++
T Consensus       651 ~l~~l~~L~-------~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l------~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          651 EIGSMPYLF-------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM------SALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             GGGGCTTCC-------EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG------GGCCCCSEEECCSSEEE
T ss_pred             HHhccccCC-------EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH------hCCCCCCEEECcCCccc
Confidence            234566666       78999999999999999998888      899999999998      88999999999999999


Q ss_pred             ccCCCCC
Q 016686          369 LARPDDS  375 (384)
Q Consensus       369 ~~~p~~~  375 (384)
                      |.+|...
T Consensus       718 g~iP~~~  724 (768)
T 3rgz_A          718 GPIPEMG  724 (768)
T ss_dssp             EECCSSS
T ss_pred             ccCCCch
Confidence            9999764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.1e-36  Score=296.19  Aligned_cols=270  Identities=19%  Similarity=0.169  Sum_probs=161.2

Q ss_pred             CCCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++|++|++++|.+..     +.++++|++|++++|.+.++ |..+..+++|++|++++|.++++.+. .+.++++|++|
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L  134 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESL  134 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS-CCTTCTTCCEE
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc-hhccCCcccEE
Confidence            5677777777777653     34677778888877777755 44555778888888888877776443 35677888888


Q ss_pred             EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc--EEEccCCCCCchHHHHH--------------
Q 016686           76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR--NLNLSNTRFSSAGVGIL--------------  137 (384)
Q Consensus        76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~--~L~L~~n~l~~~~~~~~--------------  137 (384)
                      ++++|.+..+  +.+..+++|++|++++|.+.+..+..+..+ ++|+  .|++++|.+.+..+..+              
T Consensus       135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~  213 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ  213 (606)
T ss_dssp             ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred             ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh-cccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence            8888887765  555568888888888888887777778777 7777  77777777654332211              


Q ss_pred             ------------------------------------------------------------HhCCCCCCEEeccCCCCChH
Q 016686          138 ------------------------------------------------------------AGHLPNLEILSLSGTQIDDY  157 (384)
Q Consensus       138 ------------------------------------------------------------~~~l~~L~~L~l~~n~i~~~  157 (384)
                                                                                  ++.+++|++|++++|.++ .
T Consensus       214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~  292 (606)
T 3t6q_A          214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E  292 (606)
T ss_dssp             CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred             hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence                                                                        122334444444444443 2


Q ss_pred             HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc-ccccCCCCcEEEcCCC
Q 016686          158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNA  236 (384)
Q Consensus       158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~L~~n  236 (384)
                      .|..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.+.+..+. .+..+++|++|++++|
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENLCQI------------SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBGGGG------------CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             CChhhcccccCCEEECccCCcCcCchh------------hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            223344444444444444444443333            344445555555555544432222 2445555555555555


Q ss_pred             CCChhh--HHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          237 SLTDVS--LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       237 ~i~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      .+++..  +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            555443  44455555555555555555555555555555555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-36  Score=288.28  Aligned_cols=341  Identities=12%  Similarity=0.083  Sum_probs=197.5

Q ss_pred             EEEccCCCCCCCCCC-CCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCc-hhHHhhhcCCCCccEEEeecCCCC
Q 016686            7 FLNLAWTGVTKLPNI-SSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLS   83 (384)
Q Consensus         7 ~L~l~~n~i~~l~~~-~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~ls~n~l~   83 (384)
                      .++.++++++.+|.+ ++|++|++++|.|+++ |..+..+++|++|++++|.+.. +++. .|.++++|++|++++|.+.
T Consensus        14 ~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~L~~L~Ls~n~l~   92 (455)
T 3v47_A           14 NAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYNQFL   92 (455)
T ss_dssp             EEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTTCCEEECTTCTTC
T ss_pred             ccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc-cccccccCCEEeCCCCccC
Confidence            455555555555543 3566666666666654 3344466666666666665542 2222 2445666666666666665


Q ss_pred             Cc--ccccCCCCccEEEeeCCCCCchhHHH--HHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           84 RF--CFLTQMKALEHLDLSSSMIGDDSVEM--VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        84 ~~--~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      ..  ..+..+++|++|++++|.+++..+..  +..+ ++|+.|++++|.+++..+..+++.+++|++|++++|.+++..+
T Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             ccChhhccCcccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            54  34555666666666666665544443  5555 6666666666666554444333456666666666666554444


Q ss_pred             HhhhC----------------------------------CCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCC
Q 016686          160 SYMSM----------------------------------MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE  205 (384)
Q Consensus       160 ~~l~~----------------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  205 (384)
                      ..+..                                  +++|++|++++|.+.+..+..++         .....++++
T Consensus       172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---------~~~~~~~L~  242 (455)
T 3v47_A          172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF---------DAIAGTKIQ  242 (455)
T ss_dssp             TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH---------HHTTTCCEE
T ss_pred             hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh---------cccccccee
Confidence            33333                                  34455555555555544333100         001113344


Q ss_pred             EEEccCCCCCcc----------cccccc--cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC
Q 016686          206 RLNLEQTQVSDA----------TLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  273 (384)
Q Consensus       206 ~L~l~~n~l~~~----------~~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  273 (384)
                      .+++++|...+.          ....+.  ..++|+++++++|.+++..+..++.+++|++|++++|.+++..+..+..+
T Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  322 (455)
T 3v47_A          243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL  322 (455)
T ss_dssp             EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence            444443322211          000111  12567777887777777777777777888888888888777767777777


Q ss_pred             CCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhh
Q 016686          274 RSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSF  347 (384)
Q Consensus       274 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~  347 (384)
                      ++|++|++++|.+...  .......++.++       .+++++|.+++..|..+..++++      .|.+++..++.+  
T Consensus       323 ~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~-------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--  391 (455)
T 3v47_A          323 THLLKLNLSQNFLGSI--DSRMFENLDKLE-------VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--  391 (455)
T ss_dssp             TTCCEEECCSSCCCEE--CGGGGTTCTTCC-------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--
T ss_pred             ccCCEEECCCCccCCc--ChhHhcCcccCC-------EEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--
Confidence            7888888888776321  112223455555       56777777777777777766666      667764323334  


Q ss_pred             HHhhhhhcHHHHHhhhcccccccCCC
Q 016686          348 LDQRLKYSREELLELQYSSLSLARPD  373 (384)
Q Consensus       348 ~~~~~~~~~L~~L~l~~n~l~~~~p~  373 (384)
                          ..+++|+.|++++|++++.+|.
T Consensus       392 ----~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          392 ----DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             ----TTCTTCCEEECCSSCBCCCTTT
T ss_pred             ----ccCCcccEEEccCCCcccCCCc
Confidence                5788889999999999888884

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.8e-36  Score=294.91  Aligned_cols=276  Identities=17%  Similarity=0.124  Sum_probs=154.1

Q ss_pred             CCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686           69 TSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        69 l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  147 (384)
                      +++|++|++++|.+..+ ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+...++.+++|++|
T Consensus       277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            34444444444444433 234444444555555444444434444444 4555555555544433222222344555555


Q ss_pred             eccCCCCChHH--HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc-cccc
Q 016686          148 SLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF-PLST  224 (384)
Q Consensus       148 ~l~~n~i~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~  224 (384)
                      ++++|.+.+..  +..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.+++..+. .+..
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE------------AFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT------------TTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH------------HhcCCccCCeEECCCCcCCCcccchhhhC
Confidence            55555554333  33445555555555555555544444            455666666666666666554333 2556


Q ss_pred             CCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc---cccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCC
Q 016686          225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG---LGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR  301 (384)
Q Consensus       225 ~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  301 (384)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..   +..+..+++|++|++++|.+...  .......++.
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~  501 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI--DQHAFTSLKM  501 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE--CTTTTTTCTT
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc--ChhhhccccC
Confidence            666666666666666666666666667777777777666522   13455666677777777665321  1111233444


Q ss_pred             ceeecccccccCCCccccCCCCCCchhhhhhh-----hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686          302 IEVWHELSVICPSDQIGSNGPSPSRTSLRASL-----VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       302 l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l-----~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                      ++       .+++++|++++..|..+..++.+     +|.+++..|+.+      ..+++|+.|++++|++.+..+
T Consensus       502 L~-------~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          502 MN-------HVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL------PILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CC-------EEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGH------HHHHTSSEEECTTCCEECSGG
T ss_pred             CC-------EEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhc------ccCCCCCEEeCCCCCccccCC
Confidence            44       56777777777777777766654     666666555555      677888888888888877655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-36  Score=298.38  Aligned_cols=319  Identities=11%  Similarity=0.086  Sum_probs=186.6

Q ss_pred             CCCCCcEEEccCCCchh------------------HHhhCc--CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686           20 NISSLECLNLSNCTIDS------------------ILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN   79 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~------------------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~   79 (384)
                      ++++|++|++++|.+++                  +|..++  ++++|++|++++|.+.+..+. .+.++++|++|++++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVAC  282 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTT
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcC
Confidence            45566666666666655                  565555  566666666666655442222 234556666666666


Q ss_pred             CC-CCC--c-ccccC------CCCccEEEeeCCCCCchhHH--HHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686           80 SS-LSR--F-CFLTQ------MKALEHLDLSSSMIGDDSVE--MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        80 n~-l~~--~-~~~~~------~~~L~~L~L~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  147 (384)
                      |. +++  + ..+..      +++|++|++++|.++ .+|.  .+..+ ++|+.|++++|.+++..+ . ++.+++|++|
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L  358 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-A-FGSEIKLASL  358 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence            65 554  2 22222      255666666666655 4444  55555 566666666666554444 2 2445566666


Q ss_pred             eccCCCCChHHHHhhhCCCC-ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCC--CCCCEEEccCCCCCcccccccc-
Q 016686          148 SLSGTQIDDYAISYMSMMPS-LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL--NHLERLNLEQTQVSDATLFPLS-  223 (384)
Q Consensus       148 ~l~~n~i~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~-  223 (384)
                      ++++|.++ ..|..+..+++ |++|++++|.++. +|.            .+...  ++|+.|++++|.+++..|..+. 
T Consensus       359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN------------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCS------------CCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             ECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cch------------hhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            66666555 33444555555 6666666666653 233            23332  3677777777777766666565 


Q ss_pred             ------cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC-------CCCCEEEccCCcCCCHH
Q 016686          224 ------TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-------RSLKLLDLHGGWLLTED  290 (384)
Q Consensus       224 ------~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~~~~~~  290 (384)
                            .+++|++|++++|.+++..+..+..+++|++|++++|.++......+...       ++|++|++++|.+..  
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--  502 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--  502 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc--
Confidence                  56677777777777776544555567777777777777774333333222       277777777777642  


Q ss_pred             HHHHHH-HhCCCceeecccccccCCCccccCCCCCCchhhhhhh------------hhhcCCCCCCchhhHHhhhhhcHH
Q 016686          291 AILQFC-KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------------VKQKQDPMPMSHSFLDQRLKYSRE  357 (384)
Q Consensus       291 ~~~~~~-~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------------~n~l~~~ip~~~~~~~~~~~~~~L  357 (384)
                      .+..+. ..++.++       .+++++|.+++ +|..+..++++            .|.+.+.+|+.+      ..+++|
T Consensus       503 lp~~~~~~~l~~L~-------~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l------~~l~~L  568 (636)
T 4eco_A          503 LSDDFRATTLPYLV-------GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI------TLCPSL  568 (636)
T ss_dssp             CCGGGSTTTCTTCC-------EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG------GGCSSC
T ss_pred             cChhhhhccCCCcC-------EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH------hcCCCC
Confidence            111111 2445554       56777777776 77777776666            144566777777      677788


Q ss_pred             HHHhhhcccccccCCCC
Q 016686          358 ELLELQYSSLSLARPDD  374 (384)
Q Consensus       358 ~~L~l~~n~l~~~~p~~  374 (384)
                      +.|++++|++ +.+|..
T Consensus       569 ~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          569 TQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             CEEECCSSCC-CBCCSC
T ss_pred             CEEECCCCcC-CccCHh
Confidence            8888888888 667764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=280.47  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=126.5

Q ss_pred             cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh--hhHHhccCCCCCCEEEccCCccCcccc-ccccCCCC
Q 016686          199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTNSGL-GSFKPPRS  275 (384)
Q Consensus       199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~  275 (384)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++  ..|..+..+++|++|++++|.+++..+ ..+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            678899999999999999888889999999999999999997  456789999999999999999998444 45778899


Q ss_pred             CCEEEccCCcCCCHHHHHHHHHhC-CCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCc-hhh
Q 016686          276 LKLLDLHGGWLLTEDAILQFCKMH-PRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMS-HSF  347 (384)
Q Consensus       276 L~~L~l~~n~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~-~~~  347 (384)
                      |++|++++|++.. ..    ...+ +.++       .+++++|+++ .+|..+..++++      .|.++ .+|.. +  
T Consensus       401 L~~L~Ls~N~l~~-~~----~~~l~~~L~-------~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~--  464 (520)
T 2z7x_B          401 LLSLNMSSNILTD-TI----FRCLPPRIK-------VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF--  464 (520)
T ss_dssp             CCEEECCSSCCCG-GG----GGSCCTTCC-------EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT--
T ss_pred             CCEEECcCCCCCc-ch----hhhhcccCC-------EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh--
Confidence            9999999999832 21    1222 3444       6789999998 788888777777      78887 57776 5  


Q ss_pred             HHhhhhhcHHHHHhhhcccccccCC
Q 016686          348 LDQRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       348 ~~~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                          ..+++|+.|++++|++++..+
T Consensus       465 ----~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          465 ----DRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             ----TTCTTCCEEECCSSCBCCCHH
T ss_pred             ----ccCCcccEEECcCCCCcccCC
Confidence                688999999999999987654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-35  Score=293.51  Aligned_cols=316  Identities=10%  Similarity=0.072  Sum_probs=250.7

Q ss_pred             hhHHhhCcCCCCccEEeccCCCCCc------------------hhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCc
Q 016686           35 DSILEGNENKAPLAKISLAGTTFIN------------------EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKAL   94 (384)
Q Consensus        35 ~~~~~~~~~~~~L~~L~l~~n~~~~------------------~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L   94 (384)
                      +++|..++++++|++|++++|.+++                  +|..+.|.++++|++|++++|.+.+.  ..+..+++|
T Consensus       196 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            3577788899999999999999998                  66654444899999999999987665  578899999


Q ss_pred             cEEEeeCCC-CCc-hhHHHHHhc-----cCCccEEEccCCCCCchHHH-HHHhCCCCCCEEeccCCCCChHHHHhhhCCC
Q 016686           95 EHLDLSSSM-IGD-DSVEMVACV-----GANLRNLNLSNTRFSSAGVG-ILAGHLPNLEILSLSGTQIDDYAISYMSMMP  166 (384)
Q Consensus        95 ~~L~L~~n~-l~~-~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~  166 (384)
                      ++|++++|. +++ .+|..+..+     +++|+.|++++|.++ ..+. ..++.+++|++|++++|.+++..| .+..++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            999999998 988 788887764     279999999999998 4444 234789999999999999987777 888899


Q ss_pred             CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC-CCEEEccCCCCCcccccccccCC--CCcEEEcCCCCCChhhH
Q 016686          167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLTDVSL  243 (384)
Q Consensus       167 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~L~~n~i~~~~~  243 (384)
                      +|++|++++|.+. .+|.            .+..+++ |+.|++++|.++. +|..+...+  +|++|++++|.+++..|
T Consensus       354 ~L~~L~L~~N~l~-~lp~------------~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          354 KLASLNLAYNQIT-EIPA------------NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             EESEEECCSSEEE-ECCT------------TSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             CCCEEECCCCccc-cccH------------hhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcch
Confidence            9999999999988 4455            5788888 9999999999995 666666544  89999999999999888


Q ss_pred             Hhcc-------CCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686          244 HQLS-------SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ  316 (384)
Q Consensus       244 ~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  316 (384)
                      ..++       .+++|++|++++|.++......+..+++|++|++++|.+..  .....+......--.......+++++
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~  497 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRF  497 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcC
Confidence            8888       78899999999999997555566678999999999999842  11111111100000000223678899


Q ss_pred             cccCCCCCCchh--hhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhh------hcccccccCCCCCc
Q 016686          317 IGSNGPSPSRTS--LRASL------VKQKQDPMPMSHSFLDQRLKYSREELLEL------QYSSLSLARPDDSS  376 (384)
Q Consensus       317 n~~~~~~p~~~~--~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~~  376 (384)
                      |.++ .+|..+.  .++++      .|.+++ +|..+      .++++|+.|++      ++|++.+.+|....
T Consensus       498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~  563 (636)
T 4eco_A          498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP------LNSSTLKGFGIRNQRDAQGNRTLREWPEGIT  563 (636)
T ss_dssp             SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred             CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhh------hcCCCCCEEECCCCcccccCcccccChHHHh
Confidence            9998 7888776  66666      788887 89988      78999999999      56888899987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.1e-34  Score=270.84  Aligned_cols=278  Identities=15%  Similarity=0.193  Sum_probs=169.6

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCch-hHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTID-SIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~-~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      ++|++|++++|.+++     +.++++|++|++++|.+. .++ ..+..+++|++|++++|.++++.+. .|.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCEE
Confidence            568888888888775     447888888888888876 453 3455888888888888888876543 35688888888


Q ss_pred             EeecCCCCCc--c--cccCCCCccEEEeeCCCCCchhHHH-HHhccCCccEEEccCCCCCchHHHHHH------------
Q 016686           76 DVSNSSLSRF--C--FLTQMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAGVGILA------------  138 (384)
Q Consensus        76 ~ls~n~l~~~--~--~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~------------  138 (384)
                      ++++|.+.+.  .  .+..+++|++|++++|.+.+..|.. +..+ ++|+.|++++|.+.+..+..+.            
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            8888888763  2  3778888888888888888665654 6667 8888888888887654433221            


Q ss_pred             ---------------------hCCCCCCEEeccCCCCChHHHHhhhCC---CCccEEEeeCCcCCcchhhcccchhhhhh
Q 016686          139 ---------------------GHLPNLEILSLSGTQIDDYAISYMSMM---PSLKFIDISNTDIKGFIQQVGAETDLVLS  194 (384)
Q Consensus       139 ---------------------~~l~~L~~L~l~~n~i~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  194 (384)
                                           ..+++|++|++++|.+++..+..+...   ++++.|++++|...+.....    ..+..
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~  263 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----TNFKD  263 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC----CSSCC
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch----hhhcc
Confidence                                 123679999999999998877766533   45555555555332210000    00000


Q ss_pred             H--Hhhc--CCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccc
Q 016686          195 L--TALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF  270 (384)
Q Consensus       195 ~--~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  270 (384)
                      .  ..+.  ..++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence            0  0000  12344555555555544444444444555555555555544444444445555555555555544444444


Q ss_pred             cCCCCCCEEEccCCcC
Q 016686          271 KPPRSLKLLDLHGGWL  286 (384)
Q Consensus       271 ~~~~~L~~L~l~~n~~  286 (384)
                      ..+++|++|++++|.+
T Consensus       344 ~~l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHI  359 (455)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             cCcccCCEEECCCCcc
Confidence            4445555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=286.82  Aligned_cols=353  Identities=18%  Similarity=0.183  Sum_probs=209.9

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++++|++++|.++.     +..+++|++|++++|.++++++. +..+++|++|++++|.++.+++. .|..+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCcccccccc
Confidence            357788888887764     34677888888888887776544 44778888888888877776644 356777788888


Q ss_pred             eecCCCCCcc--cccCCCCccEEEeeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCC----CEEec
Q 016686           77 VSNSSLSRFC--FLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL----EILSL  149 (384)
Q Consensus        77 ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~l  149 (384)
                      +++|.+..++  .+..+++|++|++++|.+.+ ..|..+..+ ++|+.|++++|.+++..+..+ +.+++|    +.|++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEEC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHHc-cchhccchhhhhccc
Confidence            8877777663  46777777778877777765 346667777 777777777777665433222 222333    44444


Q ss_pred             cCCCCChHHH----------------------------------------------------------------------
Q 016686          150 SGTQIDDYAI----------------------------------------------------------------------  159 (384)
Q Consensus       150 ~~n~i~~~~~----------------------------------------------------------------------  159 (384)
                      ++|.+.+..+                                                                      
T Consensus       185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            4444332211                                                                      


Q ss_pred             -----------HhhhCCCCccEEEeeCCcCCcchhhcccc----------------------------------------
Q 016686          160 -----------SYMSMMPSLKFIDISNTDIKGFIQQVGAE----------------------------------------  188 (384)
Q Consensus       160 -----------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------  188 (384)
                                 ..+..+++|+.|++++|.+.+... ++..                                        
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~  343 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  343 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-CCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccchhhhh-hhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence                       112223344444444443332110 0000                                        


Q ss_pred             ------------hhhhhh----HHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhH-HhccCCCC
Q 016686          189 ------------TDLVLS----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSK  251 (384)
Q Consensus       189 ------------~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~~~  251 (384)
                                  .+.+..    ...+..+++|++|++++|.+++..+. +..+++|++|++++|.+++..+ ..+..+++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence                        000000    01233444444455544444443222 5555566666666655554433 34556666


Q ss_pred             CCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhh
Q 016686          252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA  331 (384)
Q Consensus       252 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~  331 (384)
                      |++|++++|.+++..+..+..+++|++|++++|.+..+ .+......++.++       .+++++|.+++..|..+..++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~p~~~~~l~~L~-------~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLT-------FLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCC-------EEECTTSCCCEECTTTTTTCT
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc-cchhhhhcccCCC-------EEECCCCccccCChhhhhccc
Confidence            77777777766666666666667777777777765211 1111123344444       567888888887788887777


Q ss_pred             hh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCCCC
Q 016686          332 SL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDD  374 (384)
Q Consensus       332 ~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  374 (384)
                      ++      .|.+++..|+.+      .++++|+.|++++|++++.+|..
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIF------DRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCEEeCCCCcCCCCCHHHh------hcccCCcEEEecCCcccCCCcch
Confidence            66      677776655556      67888999999999999888753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-34  Score=284.36  Aligned_cols=160  Identities=13%  Similarity=0.104  Sum_probs=105.9

Q ss_pred             hhcCCCCCCEEEccCCCCCcccc-cccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc-ccccccCCC
Q 016686          197 ALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPR  274 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~  274 (384)
                      .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..++
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            34556666666666666665544 4566677777777777777766666777777777777777777763 566677777


Q ss_pred             CCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhH
Q 016686          275 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFL  348 (384)
Q Consensus       275 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~  348 (384)
                      +|++|++++|.+...  .......++.++       .+++++|++++.+|..+..++++      +|+++ .+|+.+   
T Consensus       474 ~L~~L~Ls~n~l~~~--~~~~~~~l~~L~-------~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~---  540 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQI--SWGVFDTLHRLQ-------LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL---  540 (606)
T ss_dssp             TCCEEECTTSCCCEE--CTTTTTTCTTCC-------EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG---
T ss_pred             CCCEEECCCCcCCcc--ChhhhcccccCC-------EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH---
Confidence            777777777776321  111123445554       56777788877777777776666      66666 567665   


Q ss_pred             Hhhhhhc-HHHHHhhhcccccccCC
Q 016686          349 DQRLKYS-REELLELQYSSLSLARP  372 (384)
Q Consensus       349 ~~~~~~~-~L~~L~l~~n~l~~~~p  372 (384)
                         ..++ +|+.|++++|++.+..+
T Consensus       541 ---~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          541 ---QHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             ---GGSCTTCCEEECCSCCCCCSST
T ss_pred             ---hhhcccCcEEEccCCCcccCCc
Confidence               5665 48888888888876555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.4e-34  Score=281.56  Aligned_cols=343  Identities=17%  Similarity=0.189  Sum_probs=249.9

Q ss_pred             CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686            3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN   79 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~   79 (384)
                      ...+++++++++++.+|.  .++|++|++++|.|+++++ .+..+++|++|++++|.++++++. .|.++++|++|++++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSH  109 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTT
T ss_pred             CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCC
Confidence            345788888888888773  3688888888888887664 556888888888888888887554 366888888888888


Q ss_pred             CCCCCcccccCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCC--CEEeccCCCC--
Q 016686           80 SSLSRFCFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL--EILSLSGTQI--  154 (384)
Q Consensus        80 n~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~i--  154 (384)
                      |.++.++.. .+++|++|++++|.+++. .|..+..+ ++|+.|++++|.++....    +.+++|  ++|++++|.+  
T Consensus       110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCC
T ss_pred             CcCCccCcc-ccccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccccCch----hhhhhceeeEEEeecccccc
Confidence            888877544 788888888888888753 34677777 888888888888765322    234444  7777777665  


Q ss_pred             ChHHHHhhh-----------------------------------------------------------------------
Q 016686          155 DDYAISYMS-----------------------------------------------------------------------  163 (384)
Q Consensus       155 ~~~~~~~l~-----------------------------------------------------------------------  163 (384)
                      ++..+..+.                                                                       
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            222111111                                                                       


Q ss_pred             ----------CCCCccEEEeeCCcCCcchhhcccch-----------------------------------------hhh
Q 016686          164 ----------MMPSLKFIDISNTDIKGFIQQVGAET-----------------------------------------DLV  192 (384)
Q Consensus       164 ----------~~~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------~~~  192 (384)
                                ..++|++|++++|.+.+.+|...+..                                         +.+
T Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence                      12367777887777775544432100                                         000


Q ss_pred             hhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh--hhHHhccCCCCCCEEEccCCccCccc-ccc
Q 016686          193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTNSG-LGS  269 (384)
Q Consensus       193 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~  269 (384)
                      ........+++|++|++++|.+++..+..+..+++|++|++++|++++  ..|..+..+++|++|++++|.+++.. ...
T Consensus       344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence            000001677899999999999999888889999999999999999997  45677899999999999999999844 445


Q ss_pred             ccCCCCCCEEEccCCcCCCHHHHHHHHHhC-CCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCC
Q 016686          270 FKPPRSLKLLDLHGGWLLTEDAILQFCKMH-PRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMP  342 (384)
Q Consensus       270 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip  342 (384)
                      +..+++|++|++++|.+. +..    ...+ +.++       .+++++|+++ .+|..+..++++      +|+++ .+|
T Consensus       424 ~~~l~~L~~L~l~~n~l~-~~~----~~~l~~~L~-------~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~  489 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLT-GSV----FRCLPPKVK-------VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP  489 (562)
T ss_dssp             CCCCTTCCEEECCSSCCC-GGG----GSSCCTTCS-------EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred             hcCcccCCEEECCCCCCC-cch----hhhhcCcCC-------EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence            778899999999999983 221    1222 3444       6788999988 688877776666      78888 578


Q ss_pred             Cc-hhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686          343 MS-HSFLDQRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       343 ~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                      .. +      ..+++|+.|++++|++.+..|
T Consensus       490 ~~~~------~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          490 DGVF------DRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTST------TTCTTCCCEECCSCCBCCCHH
T ss_pred             HHHH------hcCCCCCEEEecCCCcCCCcc
Confidence            76 5      788999999999999987655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.3e-33  Score=264.92  Aligned_cols=316  Identities=22%  Similarity=0.277  Sum_probs=210.4

Q ss_pred             CCCcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686            3 PRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN   79 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~   79 (384)
                      +++++|+++++.++.++   .+++|++|++++|.+++++. +..+++|++|++++|.++++++   +.++++|++|++++
T Consensus        46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN  121 (466)
T ss_dssp             HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred             ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh---hcCCCCCCEEECCC
Confidence            45666666666655443   45566666666666665554 4566666666666666665543   33566666666666


Q ss_pred             CCCCCcccccCCCCccEEEeeCCCCCchhH-------------------HHHHhccCCccEEEccCCCCCchHHHHHHhC
Q 016686           80 SSLSRFCFLTQMKALEHLDLSSSMIGDDSV-------------------EMVACVGANLRNLNLSNTRFSSAGVGILAGH  140 (384)
Q Consensus        80 n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  140 (384)
                      |.+...+.+..+++|++|++++|.+.+...                   ..+..+ ++|+.|++++|.+.....   +..
T Consensus       122 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~---l~~  197 (466)
T 1o6v_A          122 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL-TTLERLDISSNKVSDISV---LAK  197 (466)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC-TTCCEEECCSSCCCCCGG---GGG
T ss_pred             CCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccC-CCCCEEECcCCcCCCChh---hcc
Confidence            666555555666666666666665543210                   114444 666666666666654321   245


Q ss_pred             CCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc
Q 016686          141 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF  220 (384)
Q Consensus       141 l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  220 (384)
                      +++|++|++++|.+.+..+  +..+++|++|++++|.+.+.              +.+..+++|+.|++++|.+++..+ 
T Consensus       198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------hhhhcCCCCCEEECCCCccccchh-
Confidence            6667777776666665433  55566677777777666553              246678888999999888887644 


Q ss_pred             ccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCC
Q 016686          221 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  300 (384)
Q Consensus       221 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  300 (384)
                       +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.....    ...++
T Consensus       261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~  331 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLT  331 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCT
T ss_pred             -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----hccCc
Confidence             7788889999999998887554  7788899999999998887544  6778889999999998744321    34566


Q ss_pred             CceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686          301 RIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL  369 (384)
Q Consensus       301 ~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~  369 (384)
                      .++       .+++++|.+++.  +.+..++++      .|.+++..|  +      ..+++|+.|++++|++++
T Consensus       332 ~L~-------~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~------~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          332 KLQ-------RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L------ANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCC-------EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G------TTCTTCCEEECCCEEEEC
T ss_pred             cCC-------EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h------hcCCCCCEEeccCCcccC
Confidence            666       677888888764  456666665      677776544  4      678899999999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-33  Score=276.31  Aligned_cols=356  Identities=16%  Similarity=0.177  Sum_probs=203.5

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      ++|++|++++|.+++     +..+++|++|++++|.++++++ .+..+++|++|++++|.++++++. .|.++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCcEEE
Confidence            467777777777664     3467777777777777776553 445777777777777777776654 245777777777


Q ss_pred             eecCCCCCc---ccccCCCCccEEEeeCCCCCchh-HHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           77 VSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDS-VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        77 ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      +++|.+...   ..+..+++|++|++++|.+.+.. +..+..+ ++|++|++++|.+++..+..+ +.+++|++|+++.|
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n  182 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLS  182 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChhhh-hccccCceEecccC
Confidence            777776643   34666667777777766632222 2345555 666666666666654333322 23333444444333


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcch---------------------------hhc--------------------
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFI---------------------------QQV--------------------  185 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~---------------------------~~~--------------------  185 (384)
                      .+.......+..+++|++|++++|.+.+..                           +..                    
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            333222222223333333333333332210                           000                    


Q ss_pred             -----------------c------------------------------------cchhhhhhHH--hhcCCCCCCEEEcc
Q 016686          186 -----------------G------------------------------------AETDLVLSLT--ALQNLNHLERLNLE  210 (384)
Q Consensus       186 -----------------~------------------------------------~~~~~~~~~~--~~~~~~~L~~L~l~  210 (384)
                                       .                                    ...+.+..++  .+..+++|++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence                             0                                    0001111111  23568899999999


Q ss_pred             CCCCCccccc---ccccCCCCcEEEcCCCCCChhhH--HhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCc
Q 016686          211 QTQVSDATLF---PLSTFKELIHLSLRNASLTDVSL--HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  285 (384)
Q Consensus       211 ~n~l~~~~~~---~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  285 (384)
                      +|.+++..+.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++. .|..+..+++|++|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence            9998886543   36678899999999999987643  567888999999999998885 56667777888888888887


Q ss_pred             CCCHHHHHHHHHhCCCceeec----------ccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHH
Q 016686          286 LLTEDAILQFCKMHPRIEVWH----------ELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLD  349 (384)
Q Consensus       286 ~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~  349 (384)
                      +...+.  .....+..+.+..          .....+++++|+++ .+|. ...++++      +|++++..|+.+    
T Consensus       422 l~~l~~--~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~----  493 (549)
T 2z81_A          422 IRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF----  493 (549)
T ss_dssp             CSCCCT--TSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG----
T ss_pred             cccccc--hhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH----
Confidence            632110  0001111111110          01113455556555 4444 2333333      556665444445    


Q ss_pred             hhhhhcHHHHHhhhcccccccCC
Q 016686          350 QRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       350 ~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                        ..+++|+.|++++|++.+.+|
T Consensus       494 --~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          494 --DRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             --GGCTTCCEEECCSSCBCCCHH
T ss_pred             --hcCcccCEEEecCCCccCCCc
Confidence              556666667777776666555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.8e-34  Score=287.31  Aligned_cols=304  Identities=13%  Similarity=0.109  Sum_probs=216.9

Q ss_pred             HHhhCcCCCCccEEeccCCCCCc------------------hhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccE
Q 016686           37 ILEGNENKAPLAKISLAGTTFIN------------------EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEH   96 (384)
Q Consensus        37 ~~~~~~~~~~L~~L~l~~n~~~~------------------~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~   96 (384)
                      +|..+.++++|++|++++|.+++                  +|..+.|.++++|++|++++|.+.+.  ..+..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            66777788889999999888887                  66654455888899999988876554  46788888999


Q ss_pred             EEeeCCC-CCc-hhHHHHHhccC-------CccEEEccCCCCCchHHH-HHHhCCCCCCEEeccCCCCChHHHHhhhCCC
Q 016686           97 LDLSSSM-IGD-DSVEMVACVGA-------NLRNLNLSNTRFSSAGVG-ILAGHLPNLEILSLSGTQIDDYAISYMSMMP  166 (384)
Q Consensus        97 L~L~~n~-l~~-~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~  166 (384)
                      |++++|. +++ .+|..+..+ +       +|+.|++++|.++ ..+. ..++.+++|++|++++|.++ ..| .+..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred             EECcCCCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence            9998887 887 778777766 5       8888999888888 4444 12367888888888888887 445 777888


Q ss_pred             CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC-CCEEEccCCCCCcccccccc----------------------
Q 016686          167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNLEQTQVSDATLFPLS----------------------  223 (384)
Q Consensus       167 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~----------------------  223 (384)
                      +|+.|++++|.+. .+|.            .+..+++ |+.|++++|.++. +|..+.                      
T Consensus       596 ~L~~L~Ls~N~l~-~lp~------------~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPE------------DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             EESEEECCSSCCS-CCCT------------TSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             cceEEECcCCccc-cchH------------HHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccc
Confidence            8888888888877 3444            2444444 5555555554442 222222                      


Q ss_pred             ---------cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC-------CCCCEEEccCCcCC
Q 016686          224 ---------TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-------RSLKLLDLHGGWLL  287 (384)
Q Consensus       224 ---------~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~~~  287 (384)
                               .+++|+.|++++|.++......+..+++|+.|++++|.++......+...       ++|+.|+|++|++.
T Consensus       662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~  741 (876)
T 4ecn_A          662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT  741 (876)
T ss_dssp             SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred             cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc
Confidence                     22367777777777775444445578888888888888885333333222       28889999888874


Q ss_pred             CHHHHHHHH-HhCCCceeecccccccCCCccccCCCCCCchhhhhhh------h------hhcCCCCCCchhhHHhhhhh
Q 016686          288 TEDAILQFC-KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------V------KQKQDPMPMSHSFLDQRLKY  354 (384)
Q Consensus       288 ~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~------n~l~~~ip~~~~~~~~~~~~  354 (384)
                      .  .+..+. ..++.++       .+++++|.+++ +|..+..++++      .      |.+.+.+|..+      .++
T Consensus       742 ~--lp~~l~~~~l~~L~-------~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l------~~L  805 (876)
T 4ecn_A          742 S--LSDDFRATTLPYLS-------NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI------TTC  805 (876)
T ss_dssp             C--CCGGGSTTTCTTCC-------EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG------GGC
T ss_pred             c--chHHhhhccCCCcC-------EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH------hcC
Confidence            2  112221 2456665       67888999987 78888888777      2      66778888888      789


Q ss_pred             cHHHHHhhhcccccccCCCCC
Q 016686          355 SREELLELQYSSLSLARPDDS  375 (384)
Q Consensus       355 ~~L~~L~l~~n~l~~~~p~~~  375 (384)
                      ++|+.|+|++|++ +.+|...
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l  825 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKL  825 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCC
T ss_pred             CCCCEEECCCCCC-CccCHhh
Confidence            9999999999999 7888754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-35  Score=289.87  Aligned_cols=353  Identities=16%  Similarity=0.143  Sum_probs=199.0

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++++|++++|.+++     +.++++|++|++++|.++++++ .+..+++|++|++++|.++++.+. .|.++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEE
Confidence            356677777776653     3356667777777776666533 344666777777776666665433 245666666666


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHH--hCC----------
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILA--GHL----------  141 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~l----------  141 (384)
                      +++|.+...  ..+..+++|++|++++|.+.+ ..|..+..+ ++|++|++++|.+++..+..+.  ..+          
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            666666554  245666666666666666654 345556666 6666666666665543221110  011          


Q ss_pred             --------------CCCCEEeccCCCCCh-HHHHh---------------------------------------------
Q 016686          142 --------------PNLEILSLSGTQIDD-YAISY---------------------------------------------  161 (384)
Q Consensus       142 --------------~~L~~L~l~~n~i~~-~~~~~---------------------------------------------  161 (384)
                                    .+|++|++++|.+.+ ..+..                                             
T Consensus       190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  269 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT  269 (606)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred             CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence                          134444444443321 11111                                             


Q ss_pred             ---------------------------------hhCCCCccEEEeeCCcCCcchhhcc----------------------
Q 016686          162 ---------------------------------MSMMPSLKFIDISNTDIKGFIQQVG----------------------  186 (384)
Q Consensus       162 ---------------------------------l~~~~~L~~L~l~~n~l~~~~~~~~----------------------  186 (384)
                                                       +..+++|++|++++|.+.. +|...                      
T Consensus       270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp~~~l~~L~~L~l~~n~~~~~~~~~~  348 (606)
T 3vq2_A          270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLKSLTLTMNKGSISFKKVA  348 (606)
T ss_dssp             CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred             ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc-cccCCCCccceeeccCCcCccchhhcc
Confidence                                             1122233344444443311 11100                      


Q ss_pred             --------cchhhhhh----HHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhH-HhccCCCCCC
Q 016686          187 --------AETDLVLS----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLT  253 (384)
Q Consensus       187 --------~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~~~L~  253 (384)
                              ...+.+..    ...+..+++|++|++++|.+++ .+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence                    00011100    0133344555555555555444 23455566666666666666665544 4566677777


Q ss_pred             EEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686          254 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL  333 (384)
Q Consensus       254 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l  333 (384)
                      +|++++|.+++..+..+..+++|++|++++|.+.. ..+......++.++       .+++++|.+++..|..+..++++
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~-------~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLT-------FLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCC-------EEECTTSCCCEECTTTTTTCTTC
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC-cchHHhhccCCCCC-------EEECCCCcCCccChhhhcccccC
Confidence            77777777777666667777777777777777622 11111122344444       67788888888778877777766


Q ss_pred             ------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCCCC
Q 016686          334 ------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDD  374 (384)
Q Consensus       334 ------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  374 (384)
                            .|.+++.+|..+      ..+++|+.|++++|+++ .+|+.
T Consensus       500 ~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHY------NQLYSLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             CEEECCSSCCSCEEGGGT------TTCTTCCEEECTTSCCC-CEESC
T ss_pred             CEEECCCCcCCCcCHHHc------cCCCcCCEEECCCCcCc-ccCHh
Confidence                  677776667777      77888999999999987 55554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-33  Score=283.40  Aligned_cols=129  Identities=21%  Similarity=0.314  Sum_probs=83.2

Q ss_pred             CCCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++|++|++++|.++++.     ++++|++|++++|.++.+|.. +..+++|++|++++|.++++++. .|.++++|++|
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  126 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITL  126 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC-TTTTCTTCCEE
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh-HccccCCCCEE
Confidence            456666666666666542     466777777777777766654 44677777777777777666543 35567777777


Q ss_pred             EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHH--hccCCccEEEccCCCCCch
Q 016686           76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVA--CVGANLRNLNLSNTRFSSA  132 (384)
Q Consensus        76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~  132 (384)
                      ++++|.+...  ..+..+++|++|++++|.+++..+..+.  .+ ++|+.|++++|.+++.
T Consensus       127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEF  186 (680)
T ss_dssp             ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT-CEESEEECTTCCCCCB
T ss_pred             ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc-ccccEEECCCCccccc
Confidence            7777766655  3456677777777777777665555543  22 5677777777665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7e-32  Score=248.32  Aligned_cols=301  Identities=17%  Similarity=0.239  Sum_probs=244.3

Q ss_pred             CCCCcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            2 FPRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      +++|++|+++++.+..++   .+++|++|++++|.++.++. +..+++|++|++++|.++.++   .+.++++|++|+++
T Consensus        43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLN  118 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECT
T ss_pred             cccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECc
Confidence            578999999999888755   68899999999999998876 679999999999999998875   25689999999999


Q ss_pred             cCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           79 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        79 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      +|.+...+.+..+++|++|++++|......+ .+..+ ++|+.|++++|.+.....   ++.+++|++|++++|.+.+..
T Consensus       119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          119 EDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNM-TGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTC-TTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCG
T ss_pred             CCcccCchhhccCCceeEEECCCCCCccccc-chhhC-CCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccc
Confidence            9999888778999999999999996554333 36777 899999999999876554   367899999999999988654


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i  238 (384)
                      +  +..+++|+.+++++|.+.+..              .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+
T Consensus       194 ~--~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          194 P--LASLTSLHYFTAYVNQITDIT--------------PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             c--ccCCCccceeecccCCCCCCc--------------hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            3  788999999999999887653              25678899999999999988644  78899999999999999


Q ss_pred             ChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccc
Q 016686          239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG  318 (384)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~  318 (384)
                      ++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.. ..+ .....++.++       .+++++|.
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~-~~~-~~l~~l~~L~-------~L~L~~n~  322 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN-EDM-EVIGGLTNLT-------TLFLSQNH  322 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG-GGH-HHHHTCTTCS-------EEECCSSS
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC-cCh-hHhhccccCC-------EEEccCCc
Confidence            875  4688899999999999999875  457788999999999999833 222 3345677776       67888888


Q ss_pred             cCCCCCCchhhhhhhhhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686          319 SNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS  368 (384)
Q Consensus       319 ~~~~~p~~~~~~~~l~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~  368 (384)
                      +++..|                    +      ..+++|+.|++++|+++
T Consensus       323 l~~~~~--------------------~------~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          323 ITDIRP--------------------L------ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCGG--------------------G------GGCTTCSEESSSCC---
T ss_pred             cccccC--------------------h------hhhhccceeehhhhccc
Confidence            775322                    2      46778888999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.3e-33  Score=271.43  Aligned_cols=358  Identities=13%  Similarity=0.147  Sum_probs=258.6

Q ss_pred             CCCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            2 FPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      |+.....|.++++++.+|.  .++|++|++++|.+++++ ..+..+++|++|++++|.++++++. .|.++++|++|+++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLS   82 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECT
T ss_pred             CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECC
Confidence            4556668889999998873  468999999999999874 4566999999999999999988765 46799999999999


Q ss_pred             cCCCCCcc--cccCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCC
Q 016686           79 NSSLSRFC--FLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID  155 (384)
Q Consensus        79 ~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~  155 (384)
                      +|.+...+  .+..+++|++|++++|.+++. .+..+..+ ++|+.|++++|.+.+..+...++.+++|++|++++|.++
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            99998883  489999999999999999853 45567777 999999999998444444323467999999999999999


Q ss_pred             hHHHHhhhCCCCccEEEeeCCcCCcchhhccc----------chhhhhhH------------------------------
Q 016686          156 DYAISYMSMMPSLKFIDISNTDIKGFIQQVGA----------ETDLVLSL------------------------------  195 (384)
Q Consensus       156 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~----------~~~~~~~~------------------------------  195 (384)
                      +..+..+..+++|++|+++.|.+.......+.          ..+.+...                              
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            88888999999999999999987644322100          01111100                              


Q ss_pred             ---Hh-----------------------------------------------------------hcCCCCCCEEEccCCC
Q 016686          196 ---TA-----------------------------------------------------------LQNLNHLERLNLEQTQ  213 (384)
Q Consensus       196 ---~~-----------------------------------------------------------~~~~~~L~~L~l~~n~  213 (384)
                         ..                                                           +...++|+.+++++|.
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence               00                                                           0011345666666666


Q ss_pred             CCccccccc-ccCCCCcEEEcCCCCCChhhHHh---ccCCCCCCEEEccCCccCcccc--ccccCCCCCCEEEccCCcCC
Q 016686          214 VSDATLFPL-STFKELIHLSLRNASLTDVSLHQ---LSSLSKLTNLSIRDAVLTNSGL--GSFKPPRSLKLLDLHGGWLL  287 (384)
Q Consensus       214 l~~~~~~~l-~~~~~L~~L~L~~n~i~~~~~~~---l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~  287 (384)
                      ++.. |..+ ..+++|++|++++|++++..+..   ++.+++|++|++++|.+++..+  ..+..+++|++|++++|++.
T Consensus       322 l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          322 VFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             CCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cccC-CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence            6543 4344 57999999999999999876543   6789999999999999988643  45788899999999999984


Q ss_pred             CHHHHHHHHHhCCCce---eecc-----------cccccCCCccccCCCCCCchhhhhhh---hhhcCCCCCCchhhHHh
Q 016686          288 TEDAILQFCKMHPRIE---VWHE-----------LSVICPSDQIGSNGPSPSRTSLRASL---VKQKQDPMPMSHSFLDQ  350 (384)
Q Consensus       288 ~~~~~~~~~~~~~~l~---~~~~-----------~~~~~~l~~n~~~~~~p~~~~~~~~l---~n~l~~~ip~~~~~~~~  350 (384)
                      ..   ......++.++   +..+           ....+++++|++++. +..+.+++.+   +|+++ .+|+.      
T Consensus       401 ~l---p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~-~ip~~------  469 (549)
T 2z81_A          401 PM---PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKLK-TLPDA------  469 (549)
T ss_dssp             CC---CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCS-SCCCG------
T ss_pred             cC---ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCCccC-cCCCc------
Confidence            31   11111222222   1111           122344455555543 2233344444   67776 56763      


Q ss_pred             hhhhcHHHHHhhhcccccccCCCC
Q 016686          351 RLKYSREELLELQYSSLSLARPDD  374 (384)
Q Consensus       351 ~~~~~~L~~L~l~~n~l~~~~p~~  374 (384)
                       ..+++|+.|++++|++++..|..
T Consensus       470 -~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          470 -SLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             -GGCTTCCEEECCSSCCCCCCTTG
T ss_pred             -ccCccCCEEecCCCccCCcCHHH
Confidence             36888999999999999877754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=262.35  Aligned_cols=291  Identities=19%  Similarity=0.184  Sum_probs=199.1

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++++|++++|.++.     +..+++|++|++++|.++++ |..+..+++|++|++++|.++.++.. .|.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEEE
Confidence            356777777777664     34567777777777777665 44455777777777777777766554 255677777777


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI  154 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i  154 (384)
                      +++|.+...  ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++.....+ +.+++|+.|++++|.+
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEAL-SHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHH-TTCTTCCEEEEESCCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHh-cccCCCcEEeCCCCcC
Confidence            777776655  356666777777777777666555556666 677777777776665444433 4566677777666666


Q ss_pred             ChHHHHhhhCCCCccEEEeeCCcCCcchhhcccc----------hhhhhhHH--hhcCCCCCCEEEccCCCCCccccccc
Q 016686          155 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE----------TDLVLSLT--ALQNLNHLERLNLEQTQVSDATLFPL  222 (384)
Q Consensus       155 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----------~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (384)
                      .+..+..+..+++|+.|++++|...+..+...+.          .+.+..++  .+..+++|+.|++++|.+++..+..+
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            6554445555555555555554433222211000          11111111  57788899999999999988877788


Q ss_pred             ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686          223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  296 (384)
Q Consensus       223 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  296 (384)
                      ..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.+++....+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~  342 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF  342 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence            88999999999999999888888999999999999999999877778888899999999999987766554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=286.54  Aligned_cols=127  Identities=20%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCC-chhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCT-IDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~-i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++++||+++|.++.     ++++++|++|++++|. +..+ |..+.++++|++|++++|.+.++.+. .|.++++|++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEe
Confidence            456666666665553     3355566666666553 2233 33344555666666666555554332 24455555555


Q ss_pred             EeecCCCCCc--c--cccCCCCccEEEeeCCCCCchhH-HHHHhccCCccEEEccCCCCCc
Q 016686           76 DVSNSSLSRF--C--FLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSS  131 (384)
Q Consensus        76 ~ls~n~l~~~--~--~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~  131 (384)
                      ++++|.+.+.  .  .+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFL  162 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCe
Confidence            5555555432  1  25555555555555555544322 234444 555555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-33  Score=266.61  Aligned_cols=305  Identities=15%  Similarity=0.110  Sum_probs=256.3

Q ss_pred             CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      -+.++.++++++.+|.  .+++++|++++|.+++++. .+..+++|++|++++|.++++.+. .|.++++|++|++++|.
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCc
Confidence            3578889999998873  4589999999999998754 556999999999999999987654 46799999999999999


Q ss_pred             CCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           82 LSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        82 l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      +..++  .+..+++|++|++++|.+....+..+..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|.+++..+
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccCh
Confidence            98883  57899999999999999998878888888 999999999999987666554 578999999999999998888


Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..+..+++|+.|++++|.+.+..+.            .+..+++|+.|++++|...+..+.......+|++|++++|.++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  237 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDY------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT  237 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTT------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChh------------hcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence            8899999999999999999887766            6888999999999999877777766666679999999999999


Q ss_pred             hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCcccc
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGS  319 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~  319 (384)
                      +..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...  .......++.++       .+++++|.+
T Consensus       238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~-------~L~L~~N~l  308 (477)
T 2id5_A          238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLR-------VLNVSGNQL  308 (477)
T ss_dssp             SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTBTTCTTCC-------EEECCSSCC
T ss_pred             ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE--CHHHhcCcccCC-------EEECCCCcC
Confidence            87778899999999999999999988888888999999999999987431  111223455555       678888888


Q ss_pred             CCCCCCchhhhhhh
Q 016686          320 NGPSPSRTSLRASL  333 (384)
Q Consensus       320 ~~~~p~~~~~~~~l  333 (384)
                      ++..+..+..++++
T Consensus       309 ~~~~~~~~~~l~~L  322 (477)
T 2id5_A          309 TTLEESVFHSVGNL  322 (477)
T ss_dssp             SCCCGGGBSCGGGC
T ss_pred             ceeCHhHcCCCccc
Confidence            86555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-33  Score=282.81  Aligned_cols=345  Identities=18%  Similarity=0.178  Sum_probs=200.5

Q ss_pred             CCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++++|++++|.+++++     ++++|++|++++|.+++++ ..+..+++|++|++++|.++.+++. .|.++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh-hhccCCCCCEEE
Confidence            36777777777776543     5677777777777777653 3344777777777777777776653 355777777777


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHH-hCCCCCCEEeccCCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQ  153 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~  153 (384)
                      +++|.+..+  ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+++..+..+. ..+++|++|++++|.
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            777777666  256777777777777777776655556666 7777777777777765554432 134677777777776


Q ss_pred             CChHHHHhhhCC---------------------------CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC--CC
Q 016686          154 IDDYAISYMSMM---------------------------PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN--HL  204 (384)
Q Consensus       154 i~~~~~~~l~~~---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~--~L  204 (384)
                      +++..+..+..+                           ++|+.|++++|.+.+..+.            .+..++  +|
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~------------~~~~l~~~~L  250 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT------------TFLGLKWTNL  250 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT------------TTGGGGGSCC
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh------------HhhccCcCCC
Confidence            665444433322                           3444555555555444333            233332  36


Q ss_pred             CEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccC---------------------------------CCC
Q 016686          205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS---------------------------------LSK  251 (384)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---------------------------------~~~  251 (384)
                      +.|++++|.+++..+..++.+++|++|++++|.+++..+..+..                                 +++
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~  330 (680)
T 1ziw_A          251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC  330 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred             CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence            66666666666655555666666666666666665554444444                                 444


Q ss_pred             CCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhh
Q 016686          252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA  331 (384)
Q Consensus       252 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~  331 (384)
                      |++|++++|.+++..+..|..+++|++|++++|.+.........+..+.     ......+++++|.+++..|..+..++
T Consensus       331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-----HSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT-----TSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc-----cCcCceEECCCCCCCeEChhhhhCCC
Confidence            4445555555554444445555555555555554210000000000000     00112456667777776677666666


Q ss_pred             hh------hhhcCCCCCC-chhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686          332 SL------VKQKQDPMPM-SHSFLDQRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       332 ~l------~n~l~~~ip~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                      ++      .|.+++.+|. .+      ..+++|+.|++++|++.+..|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~------~~l~~L~~L~Ls~n~l~~~~~  447 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEW------RGLENIFEIYLSYNKYLQLTR  447 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGG------TTCTTCCEEECCSCSEEECCT
T ss_pred             CCCEEeCCCCcCccccCcccc------cCcccccEEecCCCCcceeCh
Confidence            65      5666555553 24      566667777777777655433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.5e-32  Score=259.44  Aligned_cols=301  Identities=22%  Similarity=0.259  Sum_probs=226.3

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL   99 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L   99 (384)
                      .+++++.|+++++.+..++ .+..+++|++|++++|.++.+++   +.++++|++|++++|.+...+.+..+++|++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  119 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  119 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             HhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence            3678999999999999886 46689999999999999998875   5599999999999999998877999999999999


Q ss_pred             eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHH--------------------HhCCCCCCEEeccCCCCChHHH
Q 016686          100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL--------------------AGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus       100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--------------------~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      ++|.+.+..+  +..+ ++|+.|++++|.+.+...  +                    ++.+++|++|++++|.+.+.  
T Consensus       120 ~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--  192 (466)
T 1o6v_A          120 FNNQITDIDP--LKNL-TNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--  192 (466)
T ss_dssp             CSSCCCCCGG--GTTC-TTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred             CCCCCCCChH--HcCC-CCCCEEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--
Confidence            9999986543  7777 999999999998765321  1                    12345555555555555433  


Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..+..+++|++|++++|.+.+..              .+..+++|+.|++++|.+++.  ..+..+++|++|++++|.++
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQISDIT--------------PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             hhhccCCCCCEEEecCCcccccc--------------cccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence            23455556666666666555442              244577788888888877764  35677888888888888887


Q ss_pred             hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCcccc
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGS  319 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~  319 (384)
                      +..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++.....    ...++.++       .+++++|.+
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~-------~L~L~~n~l  321 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLT-------YLTLYFNNI  321 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCS-------EEECCSSCC
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCC-------EEECcCCcC
Confidence            7554  7788888888888888887544  6778888899998888744221    34566666       678888988


Q ss_pred             CCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686          320 NGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       320 ~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                      ++..|  +..++++      .|.+++.  ..+      ..+++|+.|++++|++++..|
T Consensus       322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l------~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSL------ANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCCC--GGG------TTCTTCCEEECCSSCCCBCGG
T ss_pred             CCchh--hccCccCCEeECCCCccCCc--hhh------ccCCCCCEEeCCCCccCccch
Confidence            87665  5555555      5666643  233      688999999999999998877

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1e-33  Score=286.04  Aligned_cols=336  Identities=13%  Similarity=0.105  Sum_probs=264.3

Q ss_pred             CCCCCcEEEccCCCCCC------------------CC------CCCCCcEEEccCCCch-hHHhhCcCCCCccEEeccCC
Q 016686            1 MFPRLSFLNLAWTGVTK------------------LP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGT   55 (384)
Q Consensus         1 ~l~~L~~L~l~~n~i~~------------------l~------~~~~L~~L~ls~n~i~-~~~~~~~~~~~L~~L~l~~n   55 (384)
                      ++++|++|++++|.+++                  +|      ++++|++|++++|.+. .+|..+.++++|++|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            37899999999999988                  54      6889999999999865 68888889999999999999


Q ss_pred             C-CCc--hhHHhh-----hcCCCCccEEEeecCCCCCcc---cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEc
Q 016686           56 T-FIN--EREAFL-----YIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  124 (384)
Q Consensus        56 ~-~~~--~~~~~~-----~~~l~~L~~L~ls~n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  124 (384)
                      . +++  +|..+.     +..+++|++|++++|.+..++   .+..+++|+.|++++|.++ .+| .+..+ ++|+.|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEEC
Confidence            8 886  554322     234569999999999999775   4899999999999999998 666 77777 99999999


Q ss_pred             cCCCCCchHHHHHHhCCCC-CCEEeccCCCCChHHHHhhhCCC--CccEEEeeCCcCCcchhhcccchhhhhhHHhhc--
Q 016686          125 SNTRFSSAGVGILAGHLPN-LEILSLSGTQIDDYAISYMSMMP--SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--  199 (384)
Q Consensus       125 ~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~--  199 (384)
                      ++|.+. ..+..+ ..+++ |++|++++|.++ ..|..+...+  +|+.|++++|.+.+.++...         ..+.  
T Consensus       603 s~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---------~~l~~~  670 (876)
T 4ecn_A          603 DYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS---------CSMDDY  670 (876)
T ss_dssp             CSSCCS-CCCTTS-CEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS---------SCTTTC
T ss_pred             cCCccc-cchHHH-hhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch---------hhhccc
Confidence            999998 445444 56788 999999999988 5566665554  49999999999987655310         0112  


Q ss_pred             CCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccC-------CCCCCEEEccCCccCcccccccc-
Q 016686          200 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS-------LSKLTNLSIRDAVLTNSGLGSFK-  271 (384)
Q Consensus       200 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------~~~L~~L~l~~n~l~~~~~~~~~-  271 (384)
                      .+++|+.|++++|.++..+...+..+++|+.|++++|.++......+..       +++|++|++++|+++. .|..+. 
T Consensus       671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~  749 (876)
T 4ecn_A          671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA  749 (876)
T ss_dssp             CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGST
T ss_pred             cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhh
Confidence            3458999999999999754444558899999999999998543333332       2389999999999994 666666 


Q ss_pred             -CCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCC------CccccCCCCCCchhhhhhh------hhhcC
Q 016686          272 -PPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPS------DQIGSNGPSPSRTSLRASL------VKQKQ  338 (384)
Q Consensus       272 -~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l------~~n~~~~~~p~~~~~~~~l------~n~l~  338 (384)
                       .+++|+.|+|++|.+..   +......++.++       .+++      ++|.+.+.+|..+..++++      .|.+ 
T Consensus       750 ~~l~~L~~L~Ls~N~L~~---lp~~l~~L~~L~-------~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-  818 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSS---FPTQPLNSSQLK-------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-  818 (876)
T ss_dssp             TTCTTCCEEECCSSCCSS---CCCGGGGCTTCC-------EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred             ccCCCcCEEEeCCCCCCc---cchhhhcCCCCC-------EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence             88999999999999854   222233556665       4455      4588999999999988887      7888 


Q ss_pred             CCCCCchhhHHhhhhhcHHHHHhhhcccccccC
Q 016686          339 DPMPMSHSFLDQRLKYSREELLELQYSSLSLAR  371 (384)
Q Consensus       339 ~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  371 (384)
                      +.+|..+        .++|+.|||++|++...-
T Consensus       819 ~~Ip~~l--------~~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          819 RKVDEKL--------TPQLYILDIADNPNISID  843 (876)
T ss_dssp             CBCCSCC--------CSSSCEEECCSCTTCEEE
T ss_pred             CccCHhh--------cCCCCEEECCCCCCCccC
Confidence            6889987        268999999999986543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=1.7e-33  Score=287.72  Aligned_cols=252  Identities=17%  Similarity=0.220  Sum_probs=183.5

Q ss_pred             CCCCCcEEEccCCCCC------CCCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCc-hhHHhhhcCCCCc
Q 016686            1 MFPRLSFLNLAWTGVT------KLPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFIN-EREAFLYIETSLL   72 (384)
Q Consensus         1 ~l~~L~~L~l~~n~i~------~l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L   72 (384)
                      .+++|++|++++|...      .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+++ .+....|.++++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            4789999999999432      366899999999999999876 6667799999999999999986 3333236789999


Q ss_pred             cEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhcc-CC------------------------------
Q 016686           73 SFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-AN------------------------------  118 (384)
Q Consensus        73 ~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~------------------------------  118 (384)
                      ++|++++|.+...   ..+..+++|++|++++|.+++..+..+..+. ++                              
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            9999999998776   3688999999999999988765444433220 12                              


Q ss_pred             ccEEEccCCCCCchHHHHHHhC-------------------------------------CCCCCEEeccCCCCChHHHHh
Q 016686          119 LRNLNLSNTRFSSAGVGILAGH-------------------------------------LPNLEILSLSGTQIDDYAISY  161 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~~~-------------------------------------l~~L~~L~l~~n~i~~~~~~~  161 (384)
                      |+.|++++|.+++..+..+...                                     .++|+.|++++|.+.+..+..
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~  285 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV  285 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred             eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence            6666666665543322221110                                     246777777777776665666


Q ss_pred             hhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChh
Q 016686          162 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  241 (384)
Q Consensus       162 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~  241 (384)
                      +..+++|+.|++++|.+.+..+.            .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  353 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADE------------AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII  353 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTT------------TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred             hhcCCCCCEEECCCCcCCCCChH------------HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence            66777777777777777766665            567777777777777777776667777777777777777777776


Q ss_pred             hHHhccCCCCCCEEEccCCccCc
Q 016686          242 SLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       242 ~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                      .+..+..+++|++|++++|.+++
T Consensus       354 ~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          354 QDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CSSCSCSCCCCCEEEEETCCSCC
T ss_pred             ChhhhcCCCCCCEEECCCCCCCc
Confidence            66667777777777777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1e-31  Score=255.60  Aligned_cols=332  Identities=15%  Similarity=0.116  Sum_probs=226.0

Q ss_pred             CCCCcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            2 FPRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      +++|++|++++|.+++++   .+++|++|++++|.+++++  +..+++|++|++++|.+++++    +.++++|++|+++
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~  114 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCD  114 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECC
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee----cCCCCcCCEEECC
Confidence            578999999999988765   6789999999999999875  678999999999999998863    5589999999999


Q ss_pred             cCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           79 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        79 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      +|.+..++ +..+++|++|++++|.+++.   .+..+ ++|+.|++++|...+...   ++.+++|++|++++|.+++..
T Consensus       115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l---~l~~l-~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          115 TNKLTKLD-VSQNPLLTYLNCARNTLTEI---DVSHN-TQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             SSCCSCCC-CTTCTTCCEEECTTSCCSCC---CCTTC-TTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCeec-CCCCCcCCEEECCCCcccee---ccccC-CcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec
Confidence            99998875 88899999999999999864   25666 899999999995433331   356889999999999888642


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i  238 (384)
                         +..+++|+.|++++|.+++.               .+..+++|+.|++++|++++. |  +..+++|++|++++|++
T Consensus       187 ---l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          187 ---VSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ---CTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred             ---cccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcC
Confidence               77888899999999988875               356778888888888888873 3  67788888888888888


Q ss_pred             ChhhHHhccCCC-------CCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeec-cccc
Q 016686          239 TDVSLHQLSSLS-------KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWH-ELSV  310 (384)
Q Consensus       239 ~~~~~~~l~~~~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~-~~~~  310 (384)
                      ++..+..+..+.       +|+.|++++|.+.+..|  +..+++|+.|++++|.....- + .-...+..+.+.. ....
T Consensus       246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l-~-~~~~~L~~L~l~~~~~L~  321 (457)
T 3bz5_A          246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL-D-CQAAGITELDLSQNPKLV  321 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE-E-CTTCCCSCCCCTTCTTCC
T ss_pred             CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee-c-cCCCcceEechhhcccCC
Confidence            875433332222       33344444444333332  345566777777776532100 0 0000111111100 0111


Q ss_pred             ccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhH-------HhhhhhcHHHHHhhhcccccccCCCCCcc
Q 016686          311 ICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFL-------DQRLKYSREELLELQYSSLSLARPDDSST  377 (384)
Q Consensus       311 ~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~-------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  377 (384)
                      .+++++|++++. +  ++.++++      .|++++ ++.- ..+       ....++..++.+++++|+++|.+|.....
T Consensus       322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~~L-~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FSSV-GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CTTG-GGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             EEECCCCccccc-c--cccCCcCcEEECCCCCCCC-cccc-ccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence            445566666653 2  4444444      455553 2211 000       00124567788999999999999976543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-31  Score=250.12  Aligned_cols=281  Identities=19%  Similarity=0.232  Sum_probs=215.5

Q ss_pred             CCCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++++.|+++++.++.++     .+++|++|++++|.+..++. .+..+++|++|++++|.++++++. .|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEE
Confidence            467888888888888765     47888899998888887765 455888889999988888887655 35688888999


Q ss_pred             EeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC
Q 016686           76 DVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ  153 (384)
Q Consensus        76 ~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  153 (384)
                      ++++|.+..++  .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..    .+.+++|++|++++|.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCccc----cccccccceeeccccc
Confidence            99888888773  36778888899998888887667677777 88889999888887653    2457888888888888


Q ss_pred             CChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEc
Q 016686          154 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL  233 (384)
Q Consensus       154 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L  233 (384)
                      +++.     ...++|+.|++++|.+......               ..++|+.|++++|.+++.  ..+..+++|++|++
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL  255 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCCEEECC---------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             cccc-----CCCCcceEEECCCCeeeecccc---------------ccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence            7642     3456788888888888765322               346788999999888874  46778888999999


Q ss_pred             CCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccC
Q 016686          234 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP  313 (384)
Q Consensus       234 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  313 (384)
                      ++|.+++..+..+..+++|++|++++|++++. +..+..+++|++|++++|++...+  .. ...++.++       .++
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~--~~-~~~l~~L~-------~L~  324 (390)
T 3o6n_A          256 SYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE--RN-QPQFDRLE-------NLY  324 (390)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCG--GG-HHHHTTCS-------EEE
T ss_pred             CCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecC--cc-ccccCcCC-------EEE
Confidence            99988888788888888999999999888874 445567788999999988874321  11 23345555       567


Q ss_pred             CCccccCC
Q 016686          314 SDQIGSNG  321 (384)
Q Consensus       314 l~~n~~~~  321 (384)
                      +++|.+++
T Consensus       325 L~~N~i~~  332 (390)
T 3o6n_A          325 LDHNSIVT  332 (390)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCccce
Confidence            77777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=7.1e-30  Score=234.91  Aligned_cols=278  Identities=21%  Similarity=0.275  Sum_probs=229.8

Q ss_pred             CCCCcEEEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            2 FPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      +++|++|++++|.++++   ..+++|++|++++|.++.++ .+..+++|++|++++|.++.++.   +..+++|++|+++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~  140 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLG  140 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECT
T ss_pred             cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECC
Confidence            68999999999998875   48899999999999999875 57799999999999999998765   4589999999999


Q ss_pred             cCC-CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686           79 NSS-LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY  157 (384)
Q Consensus        79 ~n~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  157 (384)
                      +|. +...+.+..+++|++|++++|.+.+..+  +..+ ++|+.|++++|.+.+...   +..+++|+.|++++|.+.+.
T Consensus       141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL-TDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCcccccchhhCCCCcEEEecCCCcCCchh--hccC-CCCCEEEccCCccccccc---ccCCCccceeecccCCCCCC
Confidence            994 5555778999999999999999886544  6777 999999999999886544   35789999999999998866


Q ss_pred             HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCC
Q 016686          158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  237 (384)
Q Consensus       158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  237 (384)
                      .+  +..+++|++|++++|.+.+..              .+..+++|+.|++++|.+++.  ..+..+++|++|++++|.
T Consensus       215 ~~--~~~~~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          215 TP--VANMTRLNSLKIGNNKITDLS--------------PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCG--------------GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ch--hhcCCcCCEEEccCCccCCCc--------------chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence            44  778899999999999988653              356788999999999988874  457788999999999999


Q ss_pred             CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCcc
Q 016686          238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI  317 (384)
Q Consensus       238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n  317 (384)
                      +++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++.....    ...++.++       .+++++|
T Consensus       277 l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~-------~L~l~~N  343 (347)
T 4fmz_A          277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMD-------SADFANQ  343 (347)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCS-------EESSSCC
T ss_pred             cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC----hhhhhccc-------eeehhhh
Confidence            8875  357888999999999999998888888889999999999999854322    44566666       6778887


Q ss_pred             ccC
Q 016686          318 GSN  320 (384)
Q Consensus       318 ~~~  320 (384)
                      .++
T Consensus       344 ~i~  346 (347)
T 4fmz_A          344 VIK  346 (347)
T ss_dssp             ---
T ss_pred             ccc
Confidence            764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.9e-30  Score=237.01  Aligned_cols=265  Identities=19%  Similarity=0.213  Sum_probs=219.5

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686            4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS   80 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n   80 (384)
                      +++.++++++.++.+|.  .+++++|++++|.+++++. .+..+++|++|++++|.++++.+. .|.++++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECCCC
Confidence            68899999999988873  4689999999999998776 455899999999999999987544 3668999999999999


Q ss_pred             CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCc--hHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      .+..++.-. .++|++|++++|.+.+..+..+..+ ++|+.|++++|.+..  ..+.. ++.+++|++|++++|.++.. 
T Consensus       111 ~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l-  186 (330)
T 1xku_A          111 QLKELPEKM-PKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI-  186 (330)
T ss_dssp             CCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC-
T ss_pred             cCCccChhh-cccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC-
Confidence            988774222 2789999999999998888888888 999999999999864  23333 35689999999999988753 


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i  238 (384)
                      +..+  .++|++|++++|.+.+..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       187 ~~~~--~~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          187 PQGL--PPSLTELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             Cccc--cccCCEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            2222  37899999999999887766            688899999999999999988777888999999999999999


Q ss_pred             ChhhHHhccCCCCCCEEEccCCccCccccccccCC------CCCCEEEccCCcCCC
Q 016686          239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP------RSLKLLDLHGGWLLT  288 (384)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~l~~n~~~~  288 (384)
                      +. +|..+..+++|++|++++|++++..+..|...      +.++.+++++|++..
T Consensus       253 ~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          253 VK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             SS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            85 66778889999999999999998777766543      688899999998743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.8e-32  Score=260.63  Aligned_cols=343  Identities=15%  Similarity=0.172  Sum_probs=205.2

Q ss_pred             CCCCcEEEccCCCCCC------CCCCCCCcEEEccCCCch-----hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCC
Q 016686            2 FPRLSFLNLAWTGVTK------LPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFLYIETS   70 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~------l~~~~~L~~L~ls~n~i~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~   70 (384)
                      .++|++||+++|.++.      ++.+++|++|++++|.++     .++..+..+++|++|++++|.++.......+..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            3567788888777764      346777888888888776     34555567777888888887776533221122344


Q ss_pred             ----CccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCCchhHHHHHhc----cCCccEEEccCCCCCchHHH-
Q 016686           71 ----LLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVG-  135 (384)
Q Consensus        71 ----~L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~-  135 (384)
                          +|++|++++|.+...      ..+..+++|++|++++|.+.+..+..+...    .++|++|++++|.++..... 
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                588888888877642      456677778888888877766555544431    14677888877777664322 


Q ss_pred             --HHHhCCCCCCEEeccCCCCChHHHHhhh-----CCCCccEEEeeCCcCCcch----hhcccchhhhhhHHhhcCCCCC
Q 016686          136 --ILAGHLPNLEILSLSGTQIDDYAISYMS-----MMPSLKFIDISNTDIKGFI----QQVGAETDLVLSLTALQNLNHL  204 (384)
Q Consensus       136 --~~~~~l~~L~~L~l~~n~i~~~~~~~l~-----~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~~~~~~L  204 (384)
                        ..++.+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    +.            .+..+++|
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~~~~L  229 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG------------IVASKASL  229 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH------------HHHHCTTC
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH------------HHHhCCCc
Confidence              2224467778888877777665554443     2557777777777776532    22            35566777


Q ss_pred             CEEEccCCCCCcccccc-----cccCCCCcEEEcCCCCCChh----hHHhccCCCCCCEEEccCCccCccccccccC---
Q 016686          205 ERLNLEQTQVSDATLFP-----LSTFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP---  272 (384)
Q Consensus       205 ~~L~l~~n~l~~~~~~~-----l~~~~~L~~L~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---  272 (384)
                      ++|++++|.+++.....     ...+++|++|++++|.+++.    .+..+..+++|++|++++|.+++.++..+..   
T Consensus       230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  309 (461)
T 1z7x_W          230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL  309 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred             cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence            77777777666543221     12466777777777777664    3445555677777777777766554433322   


Q ss_pred             --CCCCCEEEccCCcCCCH--HHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhh-----hhhh------hhhc
Q 016686          273 --PRSLKLLDLHGGWLLTE--DAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL-----RASL------VKQK  337 (384)
Q Consensus       273 --~~~L~~L~l~~n~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~-----~~~l------~n~l  337 (384)
                        .++|++|++++|.+...  ..+......++.++       .+++++|.+++..+..+..     .+.+      .|.+
T Consensus       310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-------~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL-------ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-------EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-------EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence              25677777777766322  12233334445555       5566666665443333332     1112      3333


Q ss_pred             CC----CCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686          338 QD----PMPMSHSFLDQRLKYSREELLELQYSSLSL  369 (384)
Q Consensus       338 ~~----~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~  369 (384)
                      ++    .+|..+      ..+++|+.|++++|++++
T Consensus       383 ~~~~~~~l~~~l------~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          383 SDSSCSSLAATL------LANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CHHHHHHHHHHH------HHCCCCCEEECCSSSCCH
T ss_pred             ChhhHHHHHHHH------HhCCCccEEECCCCCCCH
Confidence            31    122222      567777888888887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=6e-32  Score=262.23  Aligned_cols=346  Identities=15%  Similarity=0.158  Sum_probs=231.0

Q ss_pred             cEEEccCCCCCCCCC--CCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686            6 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL   82 (384)
Q Consensus         6 ~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l   82 (384)
                      ++||+++|+++.+|.  .++|++|++++|.+++++ ..+..+++|++|++++|.++++.+. .|.++++|++|++++|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCce
Confidence            579999999998873  369999999999999865 4667999999999999999998654 367999999999999999


Q ss_pred             CCcccccCCCCccEEEeeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCC--CEEeccCCCC--ChH
Q 016686           83 SRFCFLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL--EILSLSGTQI--DDY  157 (384)
Q Consensus        83 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~i--~~~  157 (384)
                      ..++.. .+++|++|++++|.+++ ..|..+..+ ++|+.|++++|.+++..    ++.+++|  ++|++++|.+  .+.
T Consensus        82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             eecCcc-ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccchhh----ccccccceeeEEEeeccccccccc
Confidence            988655 89999999999999986 467888998 99999999999998632    2457788  9999999998  666


Q ss_pred             HHHhhhCC--------------------------CCccEEEeeCCc-------CCcchhhcc--------------cchh
Q 016686          158 AISYMSMM--------------------------PSLKFIDISNTD-------IKGFIQQVG--------------AETD  190 (384)
Q Consensus       158 ~~~~l~~~--------------------------~~L~~L~l~~n~-------l~~~~~~~~--------------~~~~  190 (384)
                      .|..+..+                          ++|+.+++++|.       +.+.++...              ...+
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence            66667653                          334444444432       111000000              0000


Q ss_pred             hhhhHHhhcCCCCCCEEEccCCCCCccccccc------------------------------------------------
Q 016686          191 LVLSLTALQNLNHLERLNLEQTQVSDATLFPL------------------------------------------------  222 (384)
Q Consensus       191 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l------------------------------------------------  222 (384)
                      .+..+......++|++|++++|.+++..|..+                                                
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~  315 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV  315 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccc
Confidence            00000000011234444444443333222222                                                


Q ss_pred             -----ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCc--cccccccCCCCCCEEEccCCcCCCHHHHHHH
Q 016686          223 -----STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGWLLTEDAILQF  295 (384)
Q Consensus       223 -----~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  295 (384)
                           ..+++|++|++++|++++..|..++.+++|++|++++|.+++  ..+..+..+++|++|++++|.+.. ..+...
T Consensus       316 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~~~  394 (520)
T 2z7x_B          316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKKGD  394 (520)
T ss_dssp             CCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-CGGGCS
T ss_pred             cccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-ccccch
Confidence                 455666677777776666666666666777777777776665  233456666677777777766632 011111


Q ss_pred             HHhCCCceeecccccccCCCccccCCCCCCchh-hhhhh---hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccC
Q 016686          296 CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLAR  371 (384)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~-~~~~l---~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  371 (384)
                      +..++.++       .+++++|.+++.+|..+. +++.+   .|.++ .+|+.+      ..+++|+.|++++|+++ .+
T Consensus       395 ~~~l~~L~-------~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~------~~l~~L~~L~L~~N~l~-~l  459 (520)
T 2z7x_B          395 CSWTKSLL-------SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV------VKLEALQELNVASNQLK-SV  459 (520)
T ss_dssp             CCCCTTCC-------EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGG------GGCTTCCEEECCSSCCC-CC
T ss_pred             hccCccCC-------EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhh------hcCCCCCEEECCCCcCC-cc
Confidence            12233333       567777777776666653 44444   67777 678877      68999999999999998 56


Q ss_pred             CCC
Q 016686          372 PDD  374 (384)
Q Consensus       372 p~~  374 (384)
                      |..
T Consensus       460 ~~~  462 (520)
T 2z7x_B          460 PDG  462 (520)
T ss_dssp             CTT
T ss_pred             CHH
Confidence            654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.8e-32  Score=265.76  Aligned_cols=175  Identities=17%  Similarity=0.147  Sum_probs=143.8

Q ss_pred             CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      ...++.++.+++.+|.  .+++++|++++|.+++++. .+..+++|++|++++|.++++++. .|.++++|++|++++|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC
T ss_pred             CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCc
Confidence            3567888888888873  4589999999999998765 456999999999999999988765 47799999999999999


Q ss_pred             CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCch-HHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA-GVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      +...  ..+..+++|++|++++|.++...+..+..+ ++|++|++++|.+.+. .+..+ +.+++|++|++++|.+++..
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEEC
T ss_pred             CCccCHhhhcCccccccccccccccccCCCcccccc-ccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceec
Confidence            9887  478999999999999999986554457778 9999999999998863 35544 67999999999999998766


Q ss_pred             HHhhhCCCCc----cEEEeeCCcCCcch
Q 016686          159 ISYMSMMPSL----KFIDISNTDIKGFI  182 (384)
Q Consensus       159 ~~~l~~~~~L----~~L~l~~n~l~~~~  182 (384)
                      +..+..+++|    +.+++++|.+.+..
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~  193 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred             HHHccchhccchhhhhcccCCCCceecC
Confidence            6666666666    67888877766543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.1e-31  Score=257.78  Aligned_cols=281  Identities=19%  Similarity=0.235  Sum_probs=216.0

Q ss_pred             CCCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++++.+++++|.+..++     .+++|++|++++|.+.++++ .+..+++|++|++++|.++++++. .|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEE
Confidence            467888888888887765     47888888888888887665 555888888888888888887765 36688888888


Q ss_pred             EeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC
Q 016686           76 DVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ  153 (384)
Q Consensus        76 ~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  153 (384)
                      ++++|.+..++  .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..    .+.+++|+.|++++|.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc
Confidence            88888888773  36788888888888888887777777777 88888888888887653    2457888888888887


Q ss_pred             CChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEc
Q 016686          154 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL  233 (384)
Q Consensus       154 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L  233 (384)
                      +++     +...++|+.|++++|.+....+.               ..++|+.|++++|.+++.  ..+..+++|++|++
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~---------------~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~L  261 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL  261 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEECS---------------CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             ccc-----ccCCchhheeeccCCcccccccc---------------cCCCCCEEECCCCCCCCC--hhhccCCCCCEEEC
Confidence            764     34556788888888888765433               236788888888888873  56778888888888


Q ss_pred             CCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccC
Q 016686          234 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP  313 (384)
Q Consensus       234 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  313 (384)
                      ++|.+++..|..++.+++|+.|++++|.+++. +..+..+++|+.|++++|.+...+  .. ...++.++       .++
T Consensus       262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~-~~~l~~L~-------~L~  330 (597)
T 3oja_B          262 SYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE--RN-QPQFDRLE-------NLY  330 (597)
T ss_dssp             CSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCG--GG-HHHHTTCS-------EEE
T ss_pred             CCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccC--cc-cccCCCCC-------EEE
Confidence            88888888888888888888888888888873 555566788888888888874321  11 23455555       567


Q ss_pred             CCccccCC
Q 016686          314 SDQIGSNG  321 (384)
Q Consensus       314 l~~n~~~~  321 (384)
                      +++|.+++
T Consensus       331 L~~N~l~~  338 (597)
T 3oja_B          331 LDHNSIVT  338 (597)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCCCCC
Confidence            77777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=7.4e-32  Score=263.96  Aligned_cols=328  Identities=18%  Similarity=0.132  Sum_probs=242.0

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEE
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHL   97 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L   97 (384)
                      .+...+++++++|.++++|..++  ++|++|++++|.++++++. .|.++++|++|++++|.++.+  ..+..+++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            34566899999999999998776  8999999999999998764 467999999999999999888  468899999999


Q ss_pred             EeeCCCCCchhHHHHHhccCCccEEEccCCCCCchH-HHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCc--cEEEee
Q 016686           98 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG-VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL--KFIDIS  174 (384)
Q Consensus        98 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L--~~L~l~  174 (384)
                      ++++|.++. +|..  .+ ++|+.|++++|.+++.. +..+ +.+++|++|++++|.+++.   .+..++++  +.|+++
T Consensus       106 ~Ls~N~l~~-lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          106 DVSHNRLQN-ISCC--PM-ASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             ECTTSCCCE-ECSC--CC-TTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             ECCCCcCCc-cCcc--cc-ccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            999999984 4544  56 99999999999998743 3444 6799999999999999864   34445555  999999


Q ss_pred             CCcC--Ccchhhcccc----------------------------------------------------------------
Q 016686          175 NTDI--KGFIQQVGAE----------------------------------------------------------------  188 (384)
Q Consensus       175 ~n~l--~~~~~~~~~~----------------------------------------------------------------  188 (384)
                      +|.+  .+..+..+..                                                                
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9988  4433322111                                                                


Q ss_pred             -----hhhhhhHHhhcCCCCCCEEEccCCCCCccccccc-----------------------------------------
Q 016686          189 -----TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL-----------------------------------------  222 (384)
Q Consensus       189 -----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----------------------------------------  222 (384)
                           .+.+..+......++|++|++++|.+++..|..+                                         
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence                 0011111111122367777777776665444333                                         


Q ss_pred             ------------ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc--ccccccCCCCCCEEEccCCcCCC
Q 016686          223 ------------STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS--GLGSFKPPRSLKLLDLHGGWLLT  288 (384)
Q Consensus       223 ------------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~~  288 (384)
                                  ..+++|++|++++|.+++..|..+..+++|++|++++|++++.  .+..+..+++|++|++++|.+..
T Consensus       338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence                        5677888999999988887888888889999999999988873  34567888889999999988732


Q ss_pred             HHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchh-hhhhh---hhhcCCCCCCchhhHHhhhhhcHHHHHhhhc
Q 016686          289 EDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQY  364 (384)
Q Consensus       289 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~-~~~~l---~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~  364 (384)
                       ......+..++.++       .+++++|.+++.+|..+. +++.+   +|+++ .+|+.+      ..+++|+.|++++
T Consensus       418 -~~~~~~~~~l~~L~-------~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~------~~l~~L~~L~L~~  482 (562)
T 3a79_B          418 -HAYDRTCAWAESIL-------VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDV------THLQALQELNVAS  482 (562)
T ss_dssp             -CCSSCCCCCCTTCC-------EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTT------TSSCCCSEEECCS
T ss_pred             -ccChhhhcCcccCC-------EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhh------cCCCCCCEEECCC
Confidence             11111122334444       678888998888887773 55555   77777 688887      6899999999999


Q ss_pred             ccccccCCCC
Q 016686          365 SSLSLARPDD  374 (384)
Q Consensus       365 n~l~~~~p~~  374 (384)
                      |+++ .+|..
T Consensus       483 N~l~-~l~~~  491 (562)
T 3a79_B          483 NQLK-SVPDG  491 (562)
T ss_dssp             SCCC-CCCTT
T ss_pred             CCCC-CCCHH
Confidence            9998 56654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=4.1e-30  Score=244.47  Aligned_cols=295  Identities=16%  Similarity=0.149  Sum_probs=224.3

Q ss_pred             CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEE
Q 016686           18 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL   97 (384)
Q Consensus        18 l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L   97 (384)
                      +.++++|++|++++|.++++| .+..+++|++|++++|.+++++    +..+++|++|++++|.+.+++ +..+++|++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L  111 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL  111 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence            346889999999999999886 6778999999999999998874    458899999999999988875 8889999999


Q ss_pred             EeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc
Q 016686           98 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD  177 (384)
Q Consensus        98 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~  177 (384)
                      ++++|.+++. +  +..+ ++|+.|++++|.+++..    .+.+++|++|++++|...+..  .+..+++|+.|++++|.
T Consensus       112 ~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          112 NCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             ECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCee-c--CCCC-CcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            9999998864 2  6677 89999999999988752    357889999999998543333  46788999999999999


Q ss_pred             CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686          178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  257 (384)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l  257 (384)
                      +++.               .+..+++|+.|++++|.+++.   .++.+++|++|++++|++++. |  ++.+++|+.|++
T Consensus       182 l~~l---------------~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l  240 (457)
T 3bz5_A          182 ITEL---------------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDC  240 (457)
T ss_dssp             CCCC---------------CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEEC
T ss_pred             ccee---------------ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEe
Confidence            8875               355788999999999999885   377889999999999999883 4  788899999999


Q ss_pred             cCCccCccccccccCCC-------CCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCch---
Q 016686          258 RDAVLTNSGLGSFKPPR-------SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT---  327 (384)
Q Consensus       258 ~~n~l~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~---  327 (384)
                      ++|++++..+..+..++       +|+.|++++|.+... .+   +..++.++       .+++++|...+.+|...   
T Consensus       241 ~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~-~~---~~~l~~L~-------~L~Ls~n~~l~~l~~~~~~L  309 (457)
T 3bz5_A          241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-FQ---AEGCRKIK-------ELDVTHNTQLYLLDCQAAGI  309 (457)
T ss_dssp             CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE-EE---CTTCTTCC-------CCCCTTCTTCCEEECTTCCC
T ss_pred             eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc-cc---ccccccCC-------EEECCCCcccceeccCCCcc
Confidence            99999886544443332       455566666654221 10   12345554       66777777666655432   


Q ss_pred             -----hhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686          328 -----SLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL  369 (384)
Q Consensus       328 -----~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~  369 (384)
                           ..++++      .|++++ ++  +      .++++|+.|++++|++++
T Consensus       310 ~~L~l~~~~~L~~L~L~~N~l~~-l~--l------~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          310 TELDLSQNPKLVYLYLNNTELTE-LD--V------SHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             SCCCCTTCTTCCEEECTTCCCSC-CC--C------TTCTTCSEEECCSSCCCB
T ss_pred             eEechhhcccCCEEECCCCcccc-cc--c------ccCCcCcEEECCCCCCCC
Confidence                 222233      667775 32  4      678889999999999886

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.9e-29  Score=234.55  Aligned_cols=275  Identities=19%  Similarity=0.244  Sum_probs=204.8

Q ss_pred             CCCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++|++|++++|.++.     +..+++|++|++++|.++++++. +..+++|++|++++|.++.++.. .|.++++|++|
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG-IFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH-HhcCCCCCcEE
Confidence            6899999999999875     45788999999999999987655 45899999999999999988765 36689999999


Q ss_pred             EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHH---------------HH
Q 016686           76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI---------------LA  138 (384)
Q Consensus        76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------~~  138 (384)
                      ++++|.+..+  ..+..+++|++|++++|.+++..   +..+ ++|+.+++++|.+++.....               -.
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l-~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI-PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGC-TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccc-cccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence            9999999877  35888999999999999988643   3344 66666666655554311000               00


Q ss_pred             hCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686          139 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  218 (384)
Q Consensus       139 ~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  218 (384)
                      ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.+++. 
T Consensus       223 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~-  287 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVAL-  287 (390)
T ss_dssp             CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECCSSCCCEE-
T ss_pred             cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh------------HccccccCCEEECCCCcCccc-
Confidence            1235677777777777654  4677788888888888888777666            577788888888888888774 


Q ss_pred             ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHh
Q 016686          219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM  298 (384)
Q Consensus       219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  298 (384)
                      +..+..+++|++|++++|++++ +|..+..+++|++|++++|.+++..   +..+++|++|++++|++.+ .....+...
T Consensus       288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~-~~~~~~~~~  362 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC-NSLRALFRN  362 (390)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH-HHHHHHTTT
T ss_pred             CcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc-hhHHHHHHH
Confidence            4455677888888888888876 4455677788888888888887653   4566788888888888743 444444444


Q ss_pred             CCC
Q 016686          299 HPR  301 (384)
Q Consensus       299 ~~~  301 (384)
                      ++.
T Consensus       363 ~~~  365 (390)
T 3o6n_A          363 VAR  365 (390)
T ss_dssp             CCT
T ss_pred             HHh
Confidence            443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.7e-30  Score=235.35  Aligned_cols=263  Identities=17%  Similarity=0.202  Sum_probs=210.0

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686            4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS   80 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n   80 (384)
                      +++.++++++.++.+|.  .+++++|++++|.+.++++ .+..+++|++|++++|.++++.+. .|.++++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCC
Confidence            58899999999888773  4689999999999987754 556899999999999999887554 3668899999999999


Q ss_pred             CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCc--hHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      .+..++.... ++|++|++++|.+....+..+..+ ++|+.|++++|.++.  ..+..+ +.+ +|++|++++|.+++. 
T Consensus       113 ~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l-~L~~L~l~~n~l~~l-  187 (332)
T 2ft3_A          113 HLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAF-DGL-KLNYLRISEAKLTGI-  187 (332)
T ss_dssp             CCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSS-CSC-CCSCCBCCSSBCSSC-
T ss_pred             cCCccCcccc-ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcccc-cCC-ccCEEECcCCCCCcc-
Confidence            8887743222 789999999999886666667777 899999999998863  223332 344 899999999988753 


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i  238 (384)
                      |..+  .++|++|++++|.+.+..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus       188 ~~~~--~~~L~~L~l~~n~i~~~~~~------------~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          188 PKDL--PETLNELHLDHNKIQAIELE------------DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CSSS--CSSCSCCBCCSSCCCCCCTT------------SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             Cccc--cCCCCEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            2222  36889999999998887666            578889999999999999887777888899999999999998


Q ss_pred             ChhhHHhccCCCCCCEEEccCCccCccccccccCC------CCCCEEEccCCcCC
Q 016686          239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP------RSLKLLDLHGGWLL  287 (384)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~l~~n~~~  287 (384)
                      +. +|..+..+++|++|++++|++++..+..|...      +.|+.+++++|++.
T Consensus       254 ~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          254 SR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            85 56678889999999999999988777666543      57889999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5e-29  Score=227.64  Aligned_cols=261  Identities=16%  Similarity=0.208  Sum_probs=222.1

Q ss_pred             CCCcEEEccCCCCCCC-----CCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l-----~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++++|++++|.++.+     .++++|++|++++|.++++ |..+..+++|++|++++|.++.++..+    .++|++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~----~~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----PKTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC----CTTCCEEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh----cccccEEE
Confidence            5799999999998864     4789999999999999987 667779999999999999999877653    27999999


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCc--hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      +++|.+...  ..+..+++|++|++++|.+..  ..+..+..+ ++|+.|++++|.++.. +..   ..++|++|++++|
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l-~~~---~~~~L~~L~l~~n  202 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTI-PQG---LPPSLTELHLDGN  202 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSC-CSS---CCTTCSEEECTTS
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccccC-Ccc---ccccCCEEECCCC
Confidence            999999887  358899999999999999964  456677888 9999999999998753 221   2479999999999


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS  232 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  232 (384)
                      .+++..+..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.++. .|..+..+++|++|+
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY  269 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEE
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChh------------hccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEE
Confidence            99988788899999999999999999988776            58889999999999999995 567788999999999


Q ss_pred             cCCCCCChhhHHhccC------CCCCCEEEccCCccCc--cccccccCCCCCCEEEccCCc
Q 016686          233 LRNASLTDVSLHQLSS------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGW  285 (384)
Q Consensus       233 L~~n~i~~~~~~~l~~------~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~  285 (384)
                      +++|.+++..+..|..      .+.++.+++++|++..  ..+..|..+.+++.+++++|+
T Consensus       270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            9999999877776653      3789999999999875  456678888999999999884

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=4.3e-31  Score=239.36  Aligned_cols=249  Identities=17%  Similarity=0.209  Sum_probs=203.2

Q ss_pred             CCCcEEEccCCCch---hHHhhCcCCCCccEEeccC-CCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCcc
Q 016686           22 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE   95 (384)
Q Consensus        22 ~~L~~L~ls~n~i~---~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~   95 (384)
                      .++++|++++|.+.   .+|..+..+++|++|++++ |.+++..+. .|.++++|++|++++|.+.+.  ..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            57889999999887   4788888899999999984 777653332 356889999999999988744  4688889999


Q ss_pred             EEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCC-CCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686           96 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  174 (384)
Q Consensus        96 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  174 (384)
                      +|++++|.+.+..|..+..+ ++|++|++++|.+++..+..+ +.++ +|++|++++|.+++..|..+..++ |+.|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999998887778888888 899999999999887666665 4565 899999999988877777787776 9999999


Q ss_pred             CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686          175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  254 (384)
Q Consensus       175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~  254 (384)
                      +|.+.+..+.            .+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|++
T Consensus       206 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          206 RNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             CCcccCcCCH------------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            9988877776            678888999999999988876554 777888999999999998888888888999999


Q ss_pred             EEccCCccCccccccccCCCCCCEEEccCCcCCC
Q 016686          255 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  288 (384)
Q Consensus       255 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  288 (384)
                      |++++|++++..|.. ..+++|+.+++++|+..+
T Consensus       273 L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             EECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            999999988877765 677888888888887544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=1.4e-29  Score=251.21  Aligned_cols=127  Identities=23%  Similarity=0.343  Sum_probs=106.3

Q ss_pred             CCcEEEccCCCCCCC-----CCCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEe
Q 016686            4 RLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV   77 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l-----~~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l   77 (384)
                      .+++|||++|.|+.+     .++++|++|++++|.|+++++..+ ++++|++|+|++|.++.+++. .|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG-GGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH-HhcCCCCCCEEEC
Confidence            689999999998854     478899999999999998877644 899999999999999988765 4778999999999


Q ss_pred             ecCCCCCcc--cccCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCch
Q 016686           78 SNSSLSRFC--FLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSA  132 (384)
Q Consensus        78 s~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~  132 (384)
                      ++|+++.++  .+..+++|++|++++|.++.. .|..+..+ ++|+.|++++|++++.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEE
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCcccccc
Confidence            999998873  578899999999999988753 45667777 8999999999887653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.6e-30  Score=233.67  Aligned_cols=249  Identities=20%  Similarity=0.222  Sum_probs=171.3

Q ss_pred             cEEEccCCCCCCCC--CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCch---hHHhhhcCCCCccEEEeec
Q 016686            6 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINE---REAFLYIETSLLSFLDVSN   79 (384)
Q Consensus         6 ~~L~l~~n~i~~l~--~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~ls~   79 (384)
                      +.++.++++++.+|  -.++|++|++++|.++.+|...+ .+++|++|++++|.++..   +..  +..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH--HHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc--cccccccCEEECCC
Confidence            34555666555554  22456666666666665555433 566666666666655533   122  22455666666666


Q ss_pred             CCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           80 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        80 n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      |.+..+ ..+..+++|++|++++|.+.                         +......++.+++|++|++++|.+.+..
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLK-------------------------QMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEE-------------------------SSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             CccccChhhcCCCCCCCEEECCCCccc-------------------------ccccchhhhhccCCCEEECCCCcCCccc
Confidence            555444 23444555555555554443                         3222111245677777777777776655


Q ss_pred             HHhhhCCCCccEEEeeCCcCCc-chhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  237 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  237 (384)
                      +..+..+++|++|++++|.+.+ ..+.            .+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             hhhcccCcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            6667778888888888888876 3455            57788999999999999998878888899999999999999


Q ss_pred             CChhhHHhccCCCCCCEEEccCCccCccccccccCC-CCCCEEEccCCcCCCHHHHH
Q 016686          238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAIL  293 (384)
Q Consensus       238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~  293 (384)
                      +++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++.+.+...
T Consensus       211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            998777788899999999999999999888888887 49999999999997655433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.3e-29  Score=242.08  Aligned_cols=314  Identities=18%  Similarity=0.177  Sum_probs=227.0

Q ss_pred             CCCCcEEEccCCCCCC---------CCCCCCCcEEEccCCCchhH-HhhCc-CCC----CccEEeccCCCCCch----hH
Q 016686            2 FPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDSI-LEGNE-NKA----PLAKISLAGTTFINE----RE   62 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~---------l~~~~~L~~L~ls~n~i~~~-~~~~~-~~~----~L~~L~l~~n~~~~~----~~   62 (384)
                      +++|++|++++|.++.         +..+++|++|++++|.+... +..++ .++    +|++|++++|.++..    .+
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            5789999999999883         33678999999999998742 22333 344    799999999998842    12


Q ss_pred             HhhhcCCCCccEEEeecCCCCCc--c----c-ccCCCCccEEEeeCCCCCchh----HHHHHhccCCccEEEccCCCCCc
Q 016686           63 AFLYIETSLLSFLDVSNSSLSRF--C----F-LTQMKALEHLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSS  131 (384)
Q Consensus        63 ~~~~~~l~~L~~L~ls~n~l~~~--~----~-~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~  131 (384)
                      . .+..+++|++|++++|.+...  .    . ....++|++|++++|.+++..    +..+..+ ++|+.|++++|.++.
T Consensus       107 ~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          107 S-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINE  184 (461)
T ss_dssp             H-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-TTCCEEECCSSBCHH
T ss_pred             H-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC-CCCCEEECcCCCcch
Confidence            2 356889999999999988653  1    1 233567999999999988744    5566677 899999999999876


Q ss_pred             hHHHHHHh----CCCCCCEEeccCCCCChH----HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH-hhcCCC
Q 016686          132 AGVGILAG----HLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT-ALQNLN  202 (384)
Q Consensus       132 ~~~~~~~~----~l~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-~~~~~~  202 (384)
                      ..+..+..    ..++|++|++++|.+++.    .+..+..+++|++|++++|.+.+.....+        .+ .+..++
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--------~~~~~~~~~  256 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL--------CPGLLHPSS  256 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH--------HHHHTSTTC
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH--------HHHHhcCCC
Confidence            65554432    356999999999998864    46667788999999999998865422100        00 223578


Q ss_pred             CCCEEEccCCCCCcc----cccccccCCCCcEEEcCCCCCChhhHHhccC-----CCCCCEEEccCCccCccc----ccc
Q 016686          203 HLERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTNSG----LGS  269 (384)
Q Consensus       203 ~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----~~~L~~L~l~~n~l~~~~----~~~  269 (384)
                      +|++|++++|.+++.    .+..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++..    +..
T Consensus       257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            899999999988875    3555667888999999999887765555432     368999999999888764    334


Q ss_pred             ccCCCCCCEEEccCCcCCCHHHHHHHHHh----CCCceeecccccccCCCccccCC----CCCCchhhhhhh
Q 016686          270 FKPPRSLKLLDLHGGWLLTEDAILQFCKM----HPRIEVWHELSVICPSDQIGSNG----PSPSRTSLRASL  333 (384)
Q Consensus       270 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~l~~n~~~~----~~p~~~~~~~~l  333 (384)
                      +..+++|++|++++|.+ ++.++..++..    .+.++       .+++++|.+++    .+|..+..++++
T Consensus       337 l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~-------~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRL-EDAGVRELCQGLGQPGSVLR-------VLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             HHHCSSCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCC-------EEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             HhhCCCccEEEccCCcc-ccccHHHHHHHHcCCCCceE-------EEECCCCCCChhhHHHHHHHHHhCCCc
Confidence            55668889999998886 55556655553    33444       67788888775    566666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.4e-28  Score=240.48  Aligned_cols=274  Identities=18%  Similarity=0.238  Sum_probs=215.3

Q ss_pred             CCCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhhC-cCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686            2 FPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFL   75 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L   75 (384)
                      +++|++|++++|.+++     +..+++|++|++++|.++++++.. ..+++|++|++++|.++.+++.. |.++++|++|
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH-hccCCCCCEE
Confidence            6899999999999875     447889999999999999877665 58999999999999999887763 6789999999


Q ss_pred             EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHH---------------HH
Q 016686           76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI---------------LA  138 (384)
Q Consensus        76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------~~  138 (384)
                      ++++|.+..+  ..+..+++|++|++++|.+++..   +..+ ++|+.|++++|.+++.....               ..
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l-~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~  228 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI-PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  228 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGC-TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhh-hhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence            9999999887  36889999999999999998653   3344 66666666666554321000               00


Q ss_pred             hCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686          139 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  218 (384)
Q Consensus       139 ~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  218 (384)
                      ...++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+.            .+..+++|+.|++++|.+++. 
T Consensus       229 ~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l-  293 (597)
T 3oja_B          229 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVAL-  293 (597)
T ss_dssp             SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECTTSCCCEE-
T ss_pred             ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH------------HhcCccCCCEEECCCCCCCCC-
Confidence            1234688888888887754  5678889999999999999888777            688899999999999999884 


Q ss_pred             ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHh
Q 016686          219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM  298 (384)
Q Consensus       219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  298 (384)
                      +..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+++..   +..+++|+.|++++|++.+ .....+...
T Consensus       294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~-~~~~~~~~~  368 (597)
T 3oja_B          294 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC-NSLRALFRN  368 (597)
T ss_dssp             ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH-HHHHHHTTT
T ss_pred             CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC-hhHHHHHHH
Confidence            5566778999999999999986 5666788899999999999998753   5667899999999999844 344444444


Q ss_pred             CC
Q 016686          299 HP  300 (384)
Q Consensus       299 ~~  300 (384)
                      ++
T Consensus       369 ~~  370 (597)
T 3oja_B          369 VA  370 (597)
T ss_dssp             CC
T ss_pred             Hh
Confidence            43

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.1e-29  Score=229.71  Aligned_cols=275  Identities=19%  Similarity=0.217  Sum_probs=225.9

Q ss_pred             CCCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            2 FPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      |+.....+.+++.++.+|.  .++|++|++++|.+++++. .+..+++|++|++++|.++++++. .|.++++|++|+++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLS  108 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred             CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECC
Confidence            4455668889999998873  4689999999999998877 556999999999999999987654 36689999999999


Q ss_pred             cCCCCCcc--cccCCCCccEEEeeCCCCCchhH-HHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCCCC
Q 016686           79 NSSLSRFC--FLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQI  154 (384)
Q Consensus        79 ~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~i  154 (384)
                      +|.++.++  .+..+++|++|++++|.+..... ..+..+ ++|+.|++++|. +....+..+ +.+++|++|++++|.+
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDL  186 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCc
Confidence            99998883  37889999999999999985333 356777 999999999995 655444444 6789999999999999


Q ss_pred             ChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc---cCCCCcEE
Q 016686          155 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS---TFKELIHL  231 (384)
Q Consensus       155 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L  231 (384)
                      ++..+..+..+++|++|++++|.+......            .+..+++|+.|++++|.+++..+..+.   ..+.++.+
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEI------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHH------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhh------------hhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence            988788899999999999999998765544            466689999999999999886554443   46778999


Q ss_pred             EcCCCCCChh----hHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHH
Q 016686          232 SLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA  291 (384)
Q Consensus       232 ~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  291 (384)
                      ++.++.+++.    +|..+..+++|++|++++|+++......+..+++|++|++++|++.+.+.
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            9999998873    67788999999999999999997555556889999999999999977653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=4.4e-28  Score=230.30  Aligned_cols=308  Identities=17%  Similarity=0.177  Sum_probs=139.9

Q ss_pred             CCCcEEEccCCCCCCCCC-CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            3 PRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~~-~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      ++|++|++++|.+++++. +++|++|++++|.+++++..   .++|++|++++|.+++++ .  |.++++|++|++++|+
T Consensus        91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~--~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-E--LQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-C--CTTCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-c--cCCCCCCCEEECCCCc
Confidence            356666666666665542 34566666666666554321   146666666666666654 2  4466666666666666


Q ss_pred             CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHh
Q 016686           82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  161 (384)
Q Consensus        82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  161 (384)
                      +..++..  .++|++|++++|.+++ .| .+..+ ++|+.|++++|.+++. +    ...++|++|++++|.++. .| .
T Consensus       165 l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l-~~L~~L~l~~N~l~~l-~----~~~~~L~~L~l~~n~l~~-lp-~  232 (454)
T 1jl5_A          165 LKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNL-PFLTAIYADNNSLKKL-P----DLPLSLESIVAGNNILEE-LP-E  232 (454)
T ss_dssp             CSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCSSC-C----CCCTTCCEEECCSSCCSS-CC-C
T ss_pred             CcccCCC--cccccEEECcCCcCCc-Cc-cccCC-CCCCEEECCCCcCCcC-C----CCcCcccEEECcCCcCCc-cc-c
Confidence            6655322  2466666666666664 23 35555 6666666666666541 1    112456666666666552 22 3


Q ss_pred             hhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChh
Q 016686          162 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  241 (384)
Q Consensus       162 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~  241 (384)
                      +..+++|++|++++|.+.+.. .               ..++|+.|++++|.+++. |..   +++|++|++++|.+++.
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~-~---------------~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLP-D---------------LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCC-S---------------CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE
T ss_pred             cCCCCCCCEEECCCCcCCccc-c---------------cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc
Confidence            556666666666666665431 1               123455555555554442 111   23444444444444431


Q ss_pred             h--HH-------------hccCC-CCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceee
Q 016686          242 S--LH-------------QLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  305 (384)
Q Consensus       242 ~--~~-------------~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~  305 (384)
                      .  |.             .+..+ ++|++|++++|++++ .+..   +++|++|++++|.+...+   .   .++.++  
T Consensus       293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp---~---~l~~L~--  360 (454)
T 1jl5_A          293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVP---E---LPQNLK--  360 (454)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC---C---CCTTCC--
T ss_pred             cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccccc---c---hhhhcc--
Confidence            1  00             01122 355555555555554 2221   355666666666553211   0   122222  


Q ss_pred             cccccccCCCccccCC--CCCCchhhhhhhhhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc--cCCCCCc
Q 016686          306 HELSVICPSDQIGSNG--PSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL--ARPDDSS  376 (384)
Q Consensus       306 ~~~~~~~~l~~n~~~~--~~p~~~~~~~~l~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~  376 (384)
                           .+++++|.+++  .+|.+++.+.  .|...|.+|..         .++|+.|++++|++++  .+|..-.
T Consensus       361 -----~L~L~~N~l~~l~~ip~~l~~L~--~n~~~~~i~~~---------~~~L~~L~ls~N~l~~~~~iP~sl~  419 (454)
T 1jl5_A          361 -----QLHVEYNPLREFPDIPESVEDLR--MNSHLAEVPEL---------PQNLKQLHVETNPLREFPDIPESVE  419 (454)
T ss_dssp             -----EEECCSSCCSSCCCCCTTCCEEE--CCC------------------------------------------
T ss_pred             -----EEECCCCCCCcCCCChHHHHhhh--hcccccccccc---------cCcCCEEECCCCcCCccccchhhHh
Confidence                 45555666655  5555554432  12233333331         3688999999999987  7775543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=3.2e-28  Score=231.27  Aligned_cols=302  Identities=19%  Similarity=0.208  Sum_probs=240.7

Q ss_pred             CCcEEEccCCCCCCCCCC-CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686            4 RLSFLNLAWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL   82 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~~-~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l   82 (384)
                      ++++|++++|.++++|.. ++|++|++++|.++++|..   .++|++|++++|.+++++..     .++|++|++++|.+
T Consensus        72 ~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           72 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQL  143 (454)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCC
T ss_pred             CCCEEEecCCccccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCC
Confidence            579999999999998754 5899999999999988753   48999999999999876531     27999999999999


Q ss_pred             CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhh
Q 016686           83 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM  162 (384)
Q Consensus        83 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l  162 (384)
                      .+++.+..+++|++|++++|.+++ +|.   .. ++|+.|++++|.+++. + . ++.+++|++|++++|.+++. +.  
T Consensus       144 ~~lp~~~~l~~L~~L~l~~N~l~~-lp~---~~-~~L~~L~L~~n~l~~l-~-~-~~~l~~L~~L~l~~N~l~~l-~~--  212 (454)
T 1jl5_A          144 EKLPELQNSSFLKIIDVDNNSLKK-LPD---LP-PSLEFIAAGNNQLEEL-P-E-LQNLPFLTAIYADNNSLKKL-PD--  212 (454)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSSC-C-C-CTTCTTCCEEECCSSCCSSC-CC--
T ss_pred             CCCcccCCCCCCCEEECCCCcCcc-cCC---Cc-ccccEEECcCCcCCcC-c-c-ccCCCCCCEEECCCCcCCcC-CC--
Confidence            988889999999999999999985 332   23 6899999999999874 3 3 36799999999999998753 21  


Q ss_pred             hCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhh
Q 016686          163 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS  242 (384)
Q Consensus       163 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~  242 (384)
                       ..++|++|++++|.+... +.             +..+++|+.|++++|.+++. |.   .+++|++|++++|++++. 
T Consensus       213 -~~~~L~~L~l~~n~l~~l-p~-------------~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-  272 (454)
T 1jl5_A          213 -LPLSLESIVAGNNILEEL-PE-------------LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-  272 (454)
T ss_dssp             -CCTTCCEEECCSSCCSSC-CC-------------CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-
T ss_pred             -CcCcccEEECcCCcCCcc-cc-------------cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-
Confidence             236899999999998843 33             67889999999999999874 33   247899999999999873 


Q ss_pred             HHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhC-CCceeecccccccCCCccccCC
Q 016686          243 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH-PRIEVWHELSVICPSDQIGSNG  321 (384)
Q Consensus       243 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~n~~~~  321 (384)
                      |.   ..++|++|++++|.+++.. .   ..++|+.|++++|.+...       ..+ +.++       .+++++|++++
T Consensus       273 ~~---~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-------~~~~~~L~-------~L~Ls~N~l~~  331 (454)
T 1jl5_A          273 PE---LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-------CDLPPSLE-------ELNVSNNKLIE  331 (454)
T ss_dssp             CC---CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-------CCCCTTCC-------EEECCSSCCSC
T ss_pred             Cc---ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-------cCCcCcCC-------EEECCCCcccc
Confidence            32   2489999999999998732 1   126899999999998431       112 2333       67888999986


Q ss_pred             CCCCchhhhhhh---hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc--cCCCCCc
Q 016686          322 PSPSRTSLRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL--ARPDDSS  376 (384)
Q Consensus       322 ~~p~~~~~~~~l---~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~  376 (384)
                       +|..+.+++.+   .|+++ .+|. .        +++|+.|++++|++++  .+|....
T Consensus       332 -lp~~~~~L~~L~L~~N~l~-~lp~-~--------l~~L~~L~L~~N~l~~l~~ip~~l~  380 (454)
T 1jl5_A          332 -LPALPPRLERLIASFNHLA-EVPE-L--------PQNLKQLHVEYNPLREFPDIPESVE  380 (454)
T ss_dssp             -CCCCCTTCCEEECCSSCCS-CCCC-C--------CTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             -ccccCCcCCEEECCCCccc-cccc-h--------hhhccEEECCCCCCCcCCCChHHHH
Confidence             77776666666   67777 4676 3        5788999999999998  7776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1e-28  Score=225.77  Aligned_cols=260  Identities=14%  Similarity=0.202  Sum_probs=219.3

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      ++|++|++++|.++.     +..+++|++|++++|.++++ |..+..+++|++|++++|.++.++..+.    ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEE
Confidence            589999999999875     45789999999999999987 6667799999999999999998776532    8999999


Q ss_pred             eecCCCCCcc--cccCCCCccEEEeeCCCCCc--hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           77 VSNSSLSRFC--FLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        77 ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      +++|.+..++  .+..+++|++|++++|.++.  ..+..+..+  +|+.|++++|.+++. +..   ..++|++|++++|
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l-~~~---~~~~L~~L~l~~n  203 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTGI-PKD---LPETLNELHLDHN  203 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSC-CSS---SCSSCSCCBCCSS
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCcc-Ccc---ccCCCCEEECCCC
Confidence            9999998883  58899999999999999963  344444443  899999999998863 222   2379999999999


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS  232 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  232 (384)
                      .+++..+..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.++. +|..+..+++|++|+
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG------------SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVY  270 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT------------GGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEE
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChh------------HhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEE
Confidence            99988778889999999999999999988776            68889999999999999995 667789999999999


Q ss_pred             cCCCCCChhhHHhccC------CCCCCEEEccCCccC--ccccccccCCCCCCEEEccCCc
Q 016686          233 LRNASLTDVSLHQLSS------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLDLHGGW  285 (384)
Q Consensus       233 L~~n~i~~~~~~~l~~------~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~  285 (384)
                      +++|.+++..+..+..      .+.|+.+++++|++.  +..+..+..+++|+.+++++|+
T Consensus       271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            9999999887777754      467999999999987  5567788889999999999885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=1.5e-29  Score=250.94  Aligned_cols=155  Identities=18%  Similarity=0.168  Sum_probs=129.7

Q ss_pred             cEEEccCCCCCCCC-CCC-CCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686            6 SFLNLAWTGVTKLP-NIS-SLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL   82 (384)
Q Consensus         6 ~~L~l~~n~i~~l~-~~~-~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l   82 (384)
                      .+.+-++.+++.+| .+| ++++|+|++|.|+++++. +..+++|++|++++|.++.+++. .|.++++|++|+|++|++
T Consensus        34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCC
T ss_pred             CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcC
Confidence            34566777788887 454 899999999999998765 55999999999999999998776 477999999999999999


Q ss_pred             CCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686           83 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  160 (384)
Q Consensus        83 ~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  160 (384)
                      +.+  ..|.++++|++|++++|.+++..+..+..+ ++|+.|++++|.+........++.+++|++|++++|.+++..+.
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            888  368999999999999999997666668888 99999999999987644333446799999999999998765444


Q ss_pred             hh
Q 016686          161 YM  162 (384)
Q Consensus       161 ~l  162 (384)
                      .+
T Consensus       192 ~l  193 (635)
T 4g8a_A          192 DL  193 (635)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=9.7e-30  Score=230.44  Aligned_cols=244  Identities=15%  Similarity=0.158  Sum_probs=213.9

Q ss_pred             CCCcEEEccCCCCCC---C----CCCCCCcEEEccC-CCch-hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCcc
Q 016686            3 PRLSFLNLAWTGVTK---L----PNISSLECLNLSN-CTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS   73 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~---l----~~~~~L~~L~ls~-n~i~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~   73 (384)
                      .++++|++++|.+++   +    ..+++|++|++++ |.+. .+|..+..+++|++|++++|.+++..+. .|.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCC
Confidence            578999999999985   3    4789999999995 8887 5788888999999999999999854333 356999999


Q ss_pred             EEEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccC-CccEEEccCCCCCchHHHHHHhCCCCCCEEecc
Q 016686           74 FLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS  150 (384)
Q Consensus        74 ~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  150 (384)
                      +|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+ + +|+.|++++|.+++..+..+ +.++ |++|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-SKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-CTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh-hhcCcEEECcCCeeeccCChHH-hCCc-ccEEECc
Confidence            999999998754  578899999999999999998888888888 6 99999999999987777665 4565 9999999


Q ss_pred             CCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcE
Q 016686          151 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH  230 (384)
Q Consensus       151 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~  230 (384)
                      +|.+++..+..+..+++|+.|++++|.+.+..+.             +..+++|++|++++|.+++..|..+..+++|++
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            9999888888899999999999999999877654             677899999999999999889999999999999


Q ss_pred             EEcCCCCCChhhHHhccCCCCCCEEEccCCc-cCc
Q 016686          231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTN  264 (384)
Q Consensus       231 L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~  264 (384)
                      |++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus       273 L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             EECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            999999999887765 788999999999998 544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.9e-28  Score=220.19  Aligned_cols=223  Identities=17%  Similarity=0.280  Sum_probs=148.6

Q ss_pred             CCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhH---HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccE
Q 016686            3 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI---LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF   74 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~   74 (384)
                      ++|++|++++|.++.++     .+++|++|++++|.++.+   +..+..+++|++|++++|.++.++..  +..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~--~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE--EETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh--cCCCCCCCE
Confidence            58999999999988654     788999999999999854   55666899999999999999987764  558999999


Q ss_pred             EEeecCCCCCcc---cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccC
Q 016686           75 LDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG  151 (384)
Q Consensus        75 L~ls~n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  151 (384)
                      |++++|.+...+   .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+.                   
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~-------------------  165 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQEN-------------------  165 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEGGG-------------------
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccccc-------------------
Confidence            999999887763   57778888888888888776555555555 6666666666665431                   


Q ss_pred             CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEE
Q 016686          152 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL  231 (384)
Q Consensus       152 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  231 (384)
                           ..+..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus       166 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          166 -----FLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             -----EECSCCTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             -----cchhHHhhCcCCCEEECCCCCcCCcCHH------------HhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence                 1222333444444444444444444333            34445555555555555555444444455555555


Q ss_pred             EcCCCCCChhhHHhccCCC-CCCEEEccCCccCc
Q 016686          232 SLRNASLTDVSLHQLSSLS-KLTNLSIRDAVLTN  264 (384)
Q Consensus       232 ~L~~n~i~~~~~~~l~~~~-~L~~L~l~~n~l~~  264 (384)
                      ++++|.+++..+..+..++ +|++|++++|+++.
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            5555555555554555543 55555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=228.53  Aligned_cols=253  Identities=15%  Similarity=0.197  Sum_probs=208.1

Q ss_pred             CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee
Q 016686           23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS  100 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~  100 (384)
                      ....++.++..++.+|..+.  ++++.|++++|.++.+++. .|.++++|++|++++|.+..+  ..+..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45678888888888887665  6788888888888887654 467888888888888888776  467788888888888


Q ss_pred             CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686          101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIK  179 (384)
Q Consensus       101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~L~l~~n~l~  179 (384)
                      +|.++...+..+..+ ++|+.|++++|.+.......+ ..+++|++|++++| .+....+..|..+++|++|++++|.++
T Consensus       121 ~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             SSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            888886655567777 888899998888875544443 56889999999874 455444556788999999999999887


Q ss_pred             cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686          180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  259 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~  259 (384)
                      .. +             .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus       199 ~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          199 EI-P-------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             SC-C-------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cc-c-------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            54 2             367789999999999999998888899999999999999999998888999999999999999


Q ss_pred             CccCccccccccCCCCCCEEEccCCcCCCHHHHHH
Q 016686          260 AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ  294 (384)
Q Consensus       260 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  294 (384)
                      |++++..+..+..+++|+.|++++|++.+++....
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~  299 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW  299 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred             CCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence            99998888888889999999999999877665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=9.1e-28  Score=228.70  Aligned_cols=252  Identities=17%  Similarity=0.216  Sum_probs=209.5

Q ss_pred             CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee
Q 016686           23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS  100 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~  100 (384)
                      ....++.++..++.+|..+.  +++++|++++|.++.+.+. .|.++++|++|++++|.+..+  ..+..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            35678888888888887665  6888899999888887654 466888999999999888877  467888889999999


Q ss_pred             CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686          101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIK  179 (384)
Q Consensus       101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~L~l~~n~l~  179 (384)
                      +|.++...+..+..+ ++|+.|++++|.+.......+ ..+++|++|++++| .+....+..+..+++|+.|++++|.+.
T Consensus       132 ~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             SSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            998886666667777 889999999998875544333 67889999999874 455444556888999999999999988


Q ss_pred             cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686          180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  259 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~  259 (384)
                      +. +             .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus       210 ~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  275 (452)
T 3zyi_A          210 DM-P-------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH  275 (452)
T ss_dssp             SC-C-------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cc-c-------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence            65 2             367889999999999999998888999999999999999999998888999999999999999


Q ss_pred             CccCccccccccCCCCCCEEEccCCcCCCHHHHH
Q 016686          260 AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL  293 (384)
Q Consensus       260 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  293 (384)
                      |++++..+..+..+++|+.|++++|++.+++...
T Consensus       276 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             SCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             CcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            9999888888888999999999999987766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=218.00  Aligned_cols=252  Identities=17%  Similarity=0.223  Sum_probs=210.6

Q ss_pred             CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      ++|++|++++|.++.     +..+++|++|++++|.+++++. .+..+++|++|++++|.++++++. .|.++++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH-HHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh-HhCCCccCCEEE
Confidence            589999999999885     4578999999999999998754 466999999999999999998775 366899999999


Q ss_pred             eecCCCCCcc---cccCCCCccEEEeeCC-CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           77 VSNSSLSRFC---FLTQMKALEHLDLSSS-MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        77 ls~n~l~~~~---~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      +++|.+..++   .+..+++|++|++++| .+....+..+..+ ++|+.|++++|.+++..+..+ +.+++|++|++++|
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n  208 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMK  208 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCccCHHHH-hccccCCeecCCCC
Confidence            9999998874   4888999999999999 4776666778888 999999999999987766655 67899999999999


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc----cccccccCCCC
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA----TLFPLSTFKEL  228 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L  228 (384)
                      .++......+..+++|+.|++++|.+++..+..         +........++.++++++.+++.    .|..+..+++|
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L  279 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSE---------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL  279 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccc---------cccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence            998666666667899999999999998764431         11234567899999999998874    56677899999


Q ss_pred             cEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686          229 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  266 (384)
Q Consensus       229 ~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  266 (384)
                      ++|++++|++++.....+..+++|++|++++|++.+..
T Consensus       280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            99999999999765555789999999999999988754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.1e-27  Score=221.37  Aligned_cols=245  Identities=17%  Similarity=0.200  Sum_probs=212.8

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686            4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS   80 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n   80 (384)
                      ..+.++.++..++.+|.  .++++.|++++|.|+.++. .+..+++|++|++++|.++.+++. .|.++++|++|++++|
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCC
Confidence            35678888888988873  4689999999999998764 455999999999999999988765 4779999999999999


Q ss_pred             CCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686           81 SLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  158 (384)
Q Consensus        81 ~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  158 (384)
                      .++.++  .+..+++|++|++++|.+....+..+..+ ++|+.|++++|...+..+...++.+++|++|++++|.++.. 
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            998883  58899999999999999997767778888 99999999996533333333346789999999999998854 


Q ss_pred             HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686          159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i  238 (384)
                       ..+..+++|+.|++++|.+++..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus       201 -~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          201 -PNLTPLIKLDELDLSGNHLSAIRPG------------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             -CCCTTCSSCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             -cccCCCcccCEEECCCCccCccChh------------hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence             2577899999999999999988777            689999999999999999999888999999999999999999


Q ss_pred             ChhhHHhccCCCCCCEEEccCCccCc
Q 016686          239 TDVSLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                      ++..+..+..+++|+.|++++|++.-
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CccChhHhccccCCCEEEcCCCCccC
Confidence            99888889999999999999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2e-27  Score=212.44  Aligned_cols=231  Identities=18%  Similarity=0.246  Sum_probs=152.3

Q ss_pred             cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEeeCC
Q 016686           25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS  102 (384)
Q Consensus        25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n  102 (384)
                      ++++.+++.++.+|..+  .++|++|++++|.++.+++. .|..+++|++|++++|.+..+  ..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45666666666555443  24566666666666655433 244555566666655555544  23444555555555555


Q ss_pred             C-CCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          103 M-IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       103 ~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      . +....+..+                          +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        91 ~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  144 (285)
T 1ozn_A           91 AQLRSVDPATF--------------------------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL  144 (285)
T ss_dssp             TTCCCCCTTTT--------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccccCHHHh--------------------------cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence            4 332222223                          3456666666666666655555566677777777777777766


Q ss_pred             hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686          182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  261 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~  261 (384)
                      .+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       145 ~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          145 PDD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CHh------------HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence            555            56777888888888888887666667788888888888888888777788888888888888888


Q ss_pred             cCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686          262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  296 (384)
Q Consensus       262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  296 (384)
                      +++..+..+..+++|++|++++|++.+++....+.
T Consensus       213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~  247 (285)
T 1ozn_A          213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW  247 (285)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             CCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence            88876677788888888888888886655544333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.4e-27  Score=221.70  Aligned_cols=244  Identities=18%  Similarity=0.187  Sum_probs=211.7

Q ss_pred             CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      .+.++.++.+++.+|.  .+++++|++++|.|+.++ ..+..+++|++|++++|.++.+++. .|.++++|++|++++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCc
Confidence            4678888888888873  468999999999999874 4556999999999999999988755 47799999999999999


Q ss_pred             CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      ++.+  ..+..+++|++|++++|.+....+..+..+ ++|+.|++++|...+..+...++.+++|++|++++|.+++.  
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--  211 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--  211 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence            9887  358889999999999999997666678888 99999999996533333333346789999999999999865  


Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..+..+++|+.|++++|.+.+..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus       212 ~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          212 PNLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CCCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            3577899999999999999988777            7899999999999999999988889999999999999999999


Q ss_pred             hhhHHhccCCCCCCEEEccCCccCc
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                      +..+..+..+++|+.|++++|++..
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccChHHhccccCCCEEEccCCCcCC
Confidence            9888888999999999999998754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.2e-27  Score=216.27  Aligned_cols=233  Identities=16%  Similarity=0.137  Sum_probs=153.3

Q ss_pred             CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEee
Q 016686           22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLS  100 (384)
Q Consensus        22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~  100 (384)
                      +++++|++++|.++.+|..++.+++|++|++++|.++.++..  +.++++|++|++++|.+..+ ..+..+++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            445555555555555555555555555555555555544432  23455555555555555444 244455555555555


Q ss_pred             CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCc
Q 016686          101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  180 (384)
Q Consensus       101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~  180 (384)
                      +|.+.+..|..+.       ...+.+         . ++.+++|++|++++|.++ ..|..+..+++|++|++++|.+.+
T Consensus       159 ~n~~~~~~p~~~~-------~~~~~~---------~-~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          159 ACPELTELPEPLA-------STDASG---------E-HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EETTCCCCCSCSE-------EEC-CC---------C-EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCccccChhHh-------hccchh---------h-hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            5444433332111       111100         0 134778888888888877 555667788888888888888876


Q ss_pred             chhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCC
Q 016686          181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA  260 (384)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n  260 (384)
                      ..+             .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus       221 l~~-------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          221 LGP-------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCG-------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             Cch-------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            433             3677888888888888888877888888888888888888888778888888888888888888


Q ss_pred             ccCccccccccCCCCCCEEEccCCcCC
Q 016686          261 VLTNSGLGSFKPPRSLKLLDLHGGWLL  287 (384)
Q Consensus       261 ~l~~~~~~~~~~~~~L~~L~l~~n~~~  287 (384)
                      .+.+..|..+..+++++.+++..+.+.
T Consensus       288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          288 VNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CchhhccHHHhhccCceEEeCCHHHHH
Confidence            888888888888888888888877653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-26  Score=210.07  Aligned_cols=254  Identities=17%  Similarity=0.209  Sum_probs=208.3

Q ss_pred             CCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686           23 SLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  101 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~  101 (384)
                      .++..+++.+.+...+..++ .+++|++|++++|.++.+++. .|.++++|++|++++|.+.+...+..+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence            45667788888877666665 778999999999999987654 3679999999999999998776689999999999999


Q ss_pred             CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      |.+++..     .. ++|+.|++++|.+++..+    ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        90 n~l~~l~-----~~-~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           90 NYVQELL-----VG-PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SEEEEEE-----EC-TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             Ccccccc-----CC-CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            9988543     33 899999999999986543    3478999999999999987777888899999999999999987


Q ss_pred             hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686          182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  261 (384)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~  261 (384)
                      .+..           ....+++|++|++++|.+++..  ....+++|++|++++|.+++..+ .+..+++|++|++++|.
T Consensus       160 ~~~~-----------~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          160 NFAE-----------LAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EGGG-----------GGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred             cHHH-----------HhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCc
Confidence            6652           2347899999999999999863  33458999999999999998654 48889999999999999


Q ss_pred             cCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCce
Q 016686          262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE  303 (384)
Q Consensus       262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~  303 (384)
                      +++ .+..+..+++|+.|++++|++.++ .+..+...++.++
T Consensus       226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~~~L~  265 (317)
T 3o53_A          226 LVL-IEKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQ  265 (317)
T ss_dssp             CCE-ECTTCCCCTTCCEEECTTCCCBHH-HHHHHHHTCHHHH
T ss_pred             ccc-hhhHhhcCCCCCEEEccCCCccCc-CHHHHHhccccce
Confidence            996 566788889999999999999544 3444445555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.8e-26  Score=204.96  Aligned_cols=219  Identities=18%  Similarity=0.225  Sum_probs=152.4

Q ss_pred             cEEEccCCCCCCCC--CCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC-
Q 016686            6 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-   81 (384)
Q Consensus         6 ~~L~l~~n~i~~l~--~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~-   81 (384)
                      ++++.++++++.+|  ..++|++|++++|.++.++.. +..+++|++|++++|.++++.+. .|..+++|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCC
Confidence            67899999999887  456999999999999988754 55999999999999999987554 46789999999999997 


Q ss_pred             CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      +..+  ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+                         
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~-------------------------  146 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPD-------------------------  146 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCT-------------------------
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCH-------------------------
Confidence            7776  468889999999999999886656556666 667777776666654332                         


Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..+..+++|++|++++|.+++..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hHhccCCCccEEECCCCcccccCHH------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            2233444444445554444443333            3445555555555555555555555555556666666666665


Q ss_pred             hhhHHhccCCCCCCEEEccCCccC
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLT  263 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~  263 (384)
                      +..+..+..+++|+.|++++|++.
T Consensus       215 ~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          215 ALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCCHHHcccCcccCEEeccCCCcc
Confidence            555555556666666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.2e-26  Score=211.28  Aligned_cols=214  Identities=17%  Similarity=0.158  Sum_probs=149.8

Q ss_pred             CCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEe
Q 016686           70 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  148 (384)
Q Consensus        70 ~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  148 (384)
                      +.++.|++++|.+..+ +.+..+++|++|++++|.+. .+|..+..+ ++|+.|++++|.++ ..+..+ +.+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASI-ASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGG-GGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHH-hcCcCCCEEE
Confidence            4455555555555444 23444555555555555554 344444444 55555555555554 223222 3455555555


Q ss_pred             ccCCCCChHHHHh---------hhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686          149 LSGTQIDDYAISY---------MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  219 (384)
Q Consensus       149 l~~n~i~~~~~~~---------l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  219 (384)
                      +++|.+.+..|..         +..+++|++|++++|.++ .+|.            .+..+++|++|++++|.+++ .+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~------------~l~~l~~L~~L~L~~N~l~~-l~  222 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA------------SIANLQNLKSLKIRNSPLSA-LG  222 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG------------GGGGCTTCCEEEEESSCCCC-CC
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH------------hhcCCCCCCEEEccCCCCCc-Cc
Confidence            5554444333333         345899999999999998 4455            58889999999999999998 45


Q ss_pred             cccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhC
Q 016686          220 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  299 (384)
Q Consensus       220 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  299 (384)
                      ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.. . +......+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~-iP~~l~~L  300 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-R-LPSLIAQL  300 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-C-CCGGGGGS
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-h-ccHHHhhc
Confidence            578999999999999999999899999999999999999999999899899999999999999998744 2 22233455


Q ss_pred             CCce
Q 016686          300 PRIE  303 (384)
Q Consensus       300 ~~l~  303 (384)
                      +.+.
T Consensus       301 ~~L~  304 (328)
T 4fcg_A          301 PANC  304 (328)
T ss_dssp             CTTC
T ss_pred             cCce
Confidence            6555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.3e-27  Score=212.90  Aligned_cols=238  Identities=16%  Similarity=0.147  Sum_probs=193.0

Q ss_pred             CCCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEE
Q 016686           20 NISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD   98 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~   98 (384)
                      .+++|++|++++|.+++++ ..+..+++|++|++++|.+++.++   +..+++|++|++++|.++.++   ..++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL---VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence            5678999999999998765 456689999999999999987654   558899999999999877654   347899999


Q ss_pred             eeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhh-CCCCccEEEeeCCc
Q 016686           99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTD  177 (384)
Q Consensus        99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~  177 (384)
                      +++|.+++..+.   .+ ++|+.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus       106 l~~n~l~~~~~~---~~-~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          106 AANNNISRVSCS---RG-QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             CCSSCCSEEEEC---CC-SSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CCCCccCCcCcc---cc-CCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            999999865443   24 889999999999987655444 5688999999999999877666654 68899999999999


Q ss_pred             CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686          178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  257 (384)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l  257 (384)
                      +++...              ...+++|+.|++++|.+++.. ..+..+++|++|++++|.+++ +|..+..+++|+.|++
T Consensus       181 l~~~~~--------------~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          181 IYDVKG--------------QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (317)
T ss_dssp             CCEEEC--------------CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             Cccccc--------------ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEc
Confidence            887632              335789999999999999854 448889999999999999986 5667888999999999


Q ss_pred             cCCccC-ccccccccCCCCCCEEEccCC
Q 016686          258 RDAVLT-NSGLGSFKPPRSLKLLDLHGG  284 (384)
Q Consensus       258 ~~n~l~-~~~~~~~~~~~~L~~L~l~~n  284 (384)
                      ++|++. +..+..+..++.|+.++++++
T Consensus       245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCccCcCHHHHHhccccceEEECCCc
Confidence            999998 556677777788887777644

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=8.7e-27  Score=210.99  Aligned_cols=247  Identities=19%  Similarity=0.124  Sum_probs=195.7

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCc--hhHH-----hhhcCCCCccEEEeecCCCCCc--ccc--
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREA-----FLYIETSLLSFLDVSNSSLSRF--CFL--   88 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-----~~~~~l~~L~~L~ls~n~l~~~--~~~--   88 (384)
                      ..++|++|++++|.+ .+|..++..  |++|++++|.++.  ++..     +.+.++++|++|++++|.+.+.  ..+  
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            455788899999998 777766633  8899999988854  2221     1223689999999999998754  333  


Q ss_pred             cCCCCccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH--HHHhh
Q 016686           89 TQMKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISYM  162 (384)
Q Consensus        89 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~l  162 (384)
                      ..+++|++|++++|.+++. |..+..+.    ++|++|++++|++.+..+..+ +.+++|++|++++|.+.+.  .+..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHH
Confidence            7899999999999999876 55555542    789999999999987766555 6789999999999998765  34444


Q ss_pred             --hCCCCccEEEeeCCcCCcch--hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc-cccccCCCCcEEEcCCCC
Q 016686          163 --SMMPSLKFIDISNTDIKGFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNAS  237 (384)
Q Consensus       163 --~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~  237 (384)
                        ..+++|++|++++|.+++..  +..           .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSA-----------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHH-----------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHH-----------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence              78899999999999998532  221           45678999999999999998764 455678999999999999


Q ss_pred             CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCC
Q 016686          238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL  287 (384)
Q Consensus       238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  287 (384)
                      ++. +|..+.  ++|++|++++|++++. |. +..+++|++|++++|++.
T Consensus       265 l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          265 LKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             cCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            984 565555  8999999999999986 44 788899999999999984

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5.5e-27  Score=212.33  Aligned_cols=245  Identities=19%  Similarity=0.209  Sum_probs=195.7

Q ss_pred             CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchh--HHhhCc-------CCCCccEEeccCCCCCc-hhHHhhhcCCC
Q 016686            3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDS--ILEGNE-------NKAPLAKISLAGTTFIN-EREAFLYIETS   70 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~--~~~~~~-------~~~~L~~L~l~~n~~~~-~~~~~~~~~l~   70 (384)
                      ++|++|++++|.+ .+|.  ...|++|++++|.+..  ++..+.       .+++|++|++++|.+++ .+..+.+..++
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             CCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            4577888888888 6552  2248899999998853  555444       78999999999999986 44432126899


Q ss_pred             CccEEEeecCCCCCc-ccccCC-----CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchH--HHHH-HhCC
Q 016686           71 LLSFLDVSNSSLSRF-CFLTQM-----KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGIL-AGHL  141 (384)
Q Consensus        71 ~L~~L~ls~n~l~~~-~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~-~~~l  141 (384)
                      +|++|++++|.+.+. ..+..+     ++|++|++++|.+.+..+..+..+ ++|+.|++++|++.+..  +..+ ++.+
T Consensus       122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC-CCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            999999999999876 233343     899999999999998777888888 99999999999987652  2232 2678


Q ss_pred             CCCCEEeccCCCCCh---HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686          142 PNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  218 (384)
Q Consensus       142 ~~L~~L~l~~n~i~~---~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  218 (384)
                      ++|++|++++|.+++   .....+..+++|++|++++|.+.+..+..           .+..+++|++|++++|.++. +
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~-i  268 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-----------SCDWPSQLNSLNLSFTGLKQ-V  268 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-----------CCCCCTTCCEEECTTSCCSS-C
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-----------hhhhcCCCCEEECCCCccCh-h
Confidence            999999999999983   33345568899999999999999876431           46678999999999999995 5


Q ss_pred             ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686          219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      |..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       269 p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          269 PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            55555  8999999999999986 44 88999999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.3e-25  Score=211.65  Aligned_cols=221  Identities=18%  Similarity=0.212  Sum_probs=176.7

Q ss_pred             CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEE
Q 016686           43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  122 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  122 (384)
                      .+++|++|++++|.++++++. .|..+++|++|++++|.+.+...+..+++|++|++++|.+++..     .. ++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----~~-~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VG-PSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----EC-TTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----CC-CCcCEE
Confidence            344788888888888877654 36688888888888888877655888888888888888887533     23 788899


Q ss_pred             EccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhc-CC
Q 016686          123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NL  201 (384)
Q Consensus       123 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~-~~  201 (384)
                      ++++|.+++..+    ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.            .+. .+
T Consensus       105 ~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~~l  168 (487)
T 3oja_A          105 HAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------------ELAASS  168 (487)
T ss_dssp             ECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------------GGGGGT
T ss_pred             ECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------------HHhhhC
Confidence            999888876544    2467899999999998887777788889999999999999887666            343 68


Q ss_pred             CCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEc
Q 016686          202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL  281 (384)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  281 (384)
                      ++|+.|++++|.+++..  ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ .|..+..+++|+.|++
T Consensus       169 ~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             CcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            89999999999998863  34468899999999999988555 47888999999999999987 5666778889999999


Q ss_pred             cCCcCCCHH
Q 016686          282 HGGWLLTED  290 (384)
Q Consensus       282 ~~n~~~~~~  290 (384)
                      ++|++.++.
T Consensus       245 ~~N~l~c~~  253 (487)
T 3oja_A          245 RGNGFHCGT  253 (487)
T ss_dssp             TTCCBCHHH
T ss_pred             CCCCCcCcc
Confidence            999985443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=6.7e-26  Score=217.29  Aligned_cols=236  Identities=16%  Similarity=0.159  Sum_probs=173.5

Q ss_pred             CCCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEE
Q 016686           20 NISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD   98 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~   98 (384)
                      .+++|++|++++|.+++++ ..+..+++|++|++++|.+++.++   +..+++|++|++++|.+.+++.   .++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV---GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE---CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC---CCCcCEEE
Confidence            4457888888888888764 455588888888888888876554   4578888888888887766542   37788888


Q ss_pred             eeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhh-CCCCccEEEeeCCc
Q 016686           99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTD  177 (384)
Q Consensus        99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~  177 (384)
                      +++|.+++..+.   .+ ++|+.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus       106 L~~N~l~~~~~~---~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          106 AANNNISRVSCS---RG-QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CCSSCCCCEEEC---CC-SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CcCCcCCCCCcc---cc-CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            888888765442   34 778888888888877655544 4578888888888888876666665 67888888888888


Q ss_pred             CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686          178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  257 (384)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l  257 (384)
                      +++..+              ...+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++
T Consensus       181 l~~~~~--------------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          181 IYDVKG--------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL  244 (487)
T ss_dssp             CCEEEC--------------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred             cccccc--------------cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence            876632              3357788888888888887544 47778888888888888886 5666777888888888


Q ss_pred             cCCccC-ccccccccCCCCCCEEEcc
Q 016686          258 RDAVLT-NSGLGSFKPPRSLKLLDLH  282 (384)
Q Consensus       258 ~~n~l~-~~~~~~~~~~~~L~~L~l~  282 (384)
                      ++|.+. +..+..+..++.|+.++++
T Consensus       245 ~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888887 4455556666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=7.3e-24  Score=207.53  Aligned_cols=256  Identities=18%  Similarity=0.161  Sum_probs=152.3

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      ++++|++++|.++.+|.  .++|++|++++|.|+.+|.   .+++|++|++++|.++.++.     .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCc
Confidence            46667777777766652  3467777777777766655   45667777777777665543     44666677777666


Q ss_pred             CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHh
Q 016686           82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  161 (384)
Q Consensus        82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  161 (384)
                      ++.++.  .+++|+.|++++|.++. +|.   .+ ++|+.|++++|.+++..     ..+++|+.|++++|.++...   
T Consensus       113 l~~l~~--~l~~L~~L~L~~N~l~~-lp~---~l-~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~l~~l~---  177 (622)
T 3g06_A          113 LTHLPA--LPSGLCKLWIFGNQLTS-LPV---LP-PGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTSLP---  177 (622)
T ss_dssp             CCCCCC--CCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC---
T ss_pred             CCCCCC--CCCCcCEEECCCCCCCc-CCC---CC-CCCCEEECcCCcCCCcC-----CccCCCCEEECCCCCCCCCc---
Confidence            666543  45566666666666553 221   12 56666666666655321     12344555555555544321   


Q ss_pred             hhCCCCccEEEeeCCcCCcchhhc------ccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCC
Q 016686          162 MSMMPSLKFIDISNTDIKGFIQQV------GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN  235 (384)
Q Consensus       162 l~~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~  235 (384)
                       ..+++|+.|++++|.+++.....      ....|.+..++  ..+++|+.|++++|.+++. |   ..+++|++|++++
T Consensus       178 -~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSG  250 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC--CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCS
T ss_pred             -ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccC--CCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCC
Confidence             23344555555555544321100      00001111111  1236788888888888773 3   4567888888888


Q ss_pred             CCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHH
Q 016686          236 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF  295 (384)
Q Consensus       236 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  295 (384)
                      |.+++.. .   .+++|+.|++++|.++. .|..+..+++|+.|++++|++ ++..+..+
T Consensus       251 N~L~~lp-~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l-~~~~~~~l  304 (622)
T 3g06_A          251 NRLTSLP-M---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL-SERTLQAL  304 (622)
T ss_dssp             SCCSCCC-C---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCC-CHHHHHHH
T ss_pred             CCCCcCC-c---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCC-CCcCHHHH
Confidence            8888633 2   56788889999888884 567788888899999999887 45444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.7e-24  Score=210.60  Aligned_cols=246  Identities=18%  Similarity=0.135  Sum_probs=184.7

Q ss_pred             CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCC
Q 016686           23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS  102 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n  102 (384)
                      +++.|++++|.++.+|..++  ++|++|++++|.++.++.     .+++|++|++++|.++.++.  .+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence            68999999999999988776  899999999999998765     46899999999999988865  7899999999999


Q ss_pred             CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcch
Q 016686          103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI  182 (384)
Q Consensus       103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  182 (384)
                      .+++. +.   .+ ++|+.|++++|.++...     ..+++|++|++++|.+++..    ..+++|+.|++++|.+++..
T Consensus       112 ~l~~l-~~---~l-~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          112 PLTHL-PA---LP-SGLCKLWIFGNQLTSLP-----VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CCCCC-CC---CC-TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC
T ss_pred             cCCCC-CC---CC-CCcCEEECCCCCCCcCC-----CCCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCCCc
Confidence            99853 33   34 89999999999988632     23689999999999988532    24578999999999998753


Q ss_pred             hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCcc
Q 016686          183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  262 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  262 (384)
                       .               .+++|+.|++++|.+++.. .   ..++|+.|++++|.++...    ..+++|+.|++++|.+
T Consensus       178 -~---------------~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L  233 (622)
T 3g06_A          178 -M---------------LPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRL  233 (622)
T ss_dssp             -C---------------CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCC
T ss_pred             -c---------------cCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccccC----CCCCCCCEEEccCCcc
Confidence             2               4578889999999888742 2   2367777777777777532    1246777777777777


Q ss_pred             CccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686          263 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL  333 (384)
Q Consensus       263 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l  333 (384)
                      ++. +   ..+++|+.|++++|.+.+.+.      .++++.       .+++++|.++ .+|..+..++++
T Consensus       234 ~~l-p---~~l~~L~~L~Ls~N~L~~lp~------~~~~L~-------~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          234 TSL-P---VLPSELKELMVSGNRLTSLPM------LPSGLL-------SLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             SCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCC-------EEECCSSCCC-SCCGGGGGSCTT
T ss_pred             CcC-C---CCCCcCcEEECCCCCCCcCCc------ccccCc-------EEeCCCCCCC-cCCHHHhhcccc
Confidence            763 2   334677777777777632111      223333       5666777776 567666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=5.3e-24  Score=209.55  Aligned_cols=302  Identities=14%  Similarity=0.150  Sum_probs=208.1

Q ss_pred             CCCCcEEEccCCCCCCC---------CCCCCCcEEEccCCCch-----hHHhhCcCCCCccEEeccCCCCCchhHHhhhc
Q 016686            2 FPRLSFLNLAWTGVTKL---------PNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFLYI   67 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l---------~~~~~L~~L~ls~n~i~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~   67 (384)
                      +++|++|++++|.+++.         ..+++|++|++++|.++     .++..+..+++|++|++++|.+.+++..  +.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~--~~  240 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF--FK  240 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH--HH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH--Hh
Confidence            57778888887765432         15677888888777764     3444444778888888888777766543  33


Q ss_pred             CCCCccEEEeecCCC---------------------------CCc-ccccCCCCccEEEeeCCCCCchhHHH-HHhccCC
Q 016686           68 ETSLLSFLDVSNSSL---------------------------SRF-CFLTQMKALEHLDLSSSMIGDDSVEM-VACVGAN  118 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l---------------------------~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~  118 (384)
                      .+++|++|+++....                           ..+ ..+..+++|++|++++|.+++..... +..+ ++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-PN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-TT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-cC
Confidence            667777777753211                           111 23445667888888888776554433 4555 78


Q ss_pred             ccEEEccCCCCCchHHHHHHhCCCCCCEEecc-----------CCCCChHHHHh-hhCCCCccEEEeeCCcCCcchhhcc
Q 016686          119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLS-----------GTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVG  186 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~-----------~n~i~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~  186 (384)
                      |+.|+++ +.+.......+...+++|++|+++           .+.+++..... ...+++|++|+++.+.+++....  
T Consensus       320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~--  396 (592)
T 3ogk_B          320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE--  396 (592)
T ss_dssp             CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH--
T ss_pred             CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH--
Confidence            8888887 445545555555667888888887           35666554433 34578888888877777765444  


Q ss_pred             cchhhhhhHHhhcC-CCCCCEEEcc----CCCCCcc-----cccccccCCCCcEEEcCCCC--CChhhHHhcc-CCCCCC
Q 016686          187 AETDLVLSLTALQN-LNHLERLNLE----QTQVSDA-----TLFPLSTFKELIHLSLRNAS--LTDVSLHQLS-SLSKLT  253 (384)
Q Consensus       187 ~~~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~-~~~~L~  253 (384)
                                .+.. +++|+.|+++    .|.+++.     .+..+..+++|++|++++|.  +++..+..++ .+++|+
T Consensus       397 ----------~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~  466 (592)
T 3ogk_B          397 ----------SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR  466 (592)
T ss_dssp             ----------HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred             ----------HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence                      3443 7889999996    5677763     23335678999999997654  7777666665 489999


Q ss_pred             EEEccCCccCcccc-ccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCch
Q 016686          254 NLSIRDAVLTNSGL-GSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT  327 (384)
Q Consensus       254 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~  327 (384)
                      +|++++|.+++.+. ..+..+++|++|++++|.+ ++.++..+...++.++       .+++++|++++.-...+
T Consensus       467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~-------~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKLPSLR-------YLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-BHHHHHHHHHHCSSCC-------EEEEESCBCCTTCTTGG
T ss_pred             EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-cHHHHHHHHHhcCccC-------eeECcCCcCCHHHHHHH
Confidence            99999999987543 3456789999999999996 8888888888888887       67888888876544433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=3e-24  Score=211.35  Aligned_cols=292  Identities=17%  Similarity=0.165  Sum_probs=221.5

Q ss_pred             CCCCcEEEccCCCCCCCC---------CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCC-----------------
Q 016686            2 FPRLSFLNLAWTGVTKLP---------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT-----------------   55 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l~---------~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n-----------------   55 (384)
                      +++|++|++++|.++++.         ++++|++|++++|.+.+++..+..+++|++|+++..                 
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            689999999999987432         689999999999999888766667777777777632                 


Q ss_pred             ----------CCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHH-HhccCCccE
Q 016686           56 ----------TFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRN  121 (384)
Q Consensus        56 ----------~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~  121 (384)
                                ....++..  +..+++|++|++++|.+.+.   ..+..+++|++|+++ +.+.+.....+ ..+ ++|++
T Consensus       271 ~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~-~~L~~  346 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPIL--FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC-KQLKR  346 (592)
T ss_dssp             TCCEEEETTCCTTTGGGG--GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC-TTCCE
T ss_pred             cccccCccccchhHHHHH--HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC-CCCCE
Confidence                      12223322  44788999999999997654   236889999999999 45554444444 555 99999


Q ss_pred             EEcc-----------CCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhC-CCCccEEEee----CCcCCcchhhc
Q 016686          122 LNLS-----------NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGFIQQV  185 (384)
Q Consensus       122 L~L~-----------~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~-~~~L~~L~l~----~n~l~~~~~~~  185 (384)
                      |+++           .+.++......+...+++|++|++..+.+++..+..+.. +++|++|+++    .|.+++.+.+.
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            9999           357887767666677999999999999999888888775 8999999997    55676531110


Q ss_pred             ccchhhhhhHHhhcCCCCCCEEEccCCC--CCcccccccc-cCCCCcEEEcCCCCCChhh-HHhccCCCCCCEEEccCCc
Q 016686          186 GAETDLVLSLTALQNLNHLERLNLEQTQ--VSDATLFPLS-TFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAV  261 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~-~~~~L~~L~L~~n~i~~~~-~~~l~~~~~L~~L~l~~n~  261 (384)
                           .+.  ..+..+++|+.|+++.|.  +++..+..+. .+++|++|++++|.+++.. +..+..+++|++|++++|.
T Consensus       427 -----~~~--~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          427 -----GVR--SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             -----HHH--HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             -----HHH--HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence                 000  135678999999998653  7776555554 4899999999999998854 4556789999999999999


Q ss_pred             cCccccc-cccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceee
Q 016686          262 LTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  305 (384)
Q Consensus       262 l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~  305 (384)
                      +++.... .+..+++|++|++++|++ +..++..+...+|.+.+.
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRA-SMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBC-CTTCTTGGGGCCTTEEEE
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcC-CHHHHHHHHHhCCCcEEE
Confidence            8876444 345679999999999996 666666677777877643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.8e-24  Score=201.66  Aligned_cols=244  Identities=17%  Similarity=0.195  Sum_probs=163.4

Q ss_pred             hHHhhCcCCCCccEEeccCCCCCchhHH-h--hhcCCCCccEEEeecCCCCCc------------ccccCCCCccEEEee
Q 016686           36 SILEGNENKAPLAKISLAGTTFINEREA-F--LYIETSLLSFLDVSNSSLSRF------------CFLTQMKALEHLDLS  100 (384)
Q Consensus        36 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~--~~~~l~~L~~L~ls~n~l~~~------------~~~~~~~~L~~L~L~  100 (384)
                      .++..+..+++|++|++++|.++..... +  .+.++++|++|++++|.+..+            ..+..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3444444666677777777766653221 1  134567777777776644322            123567778888888


Q ss_pred             CCCCCc----hhHHHHHhccCCccEEEccCCCCCchHHHHHHh---CC---------CCCCEEeccCCCCCh-HHH---H
Q 016686          101 SSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDD-YAI---S  160 (384)
Q Consensus       101 ~n~l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~l---------~~L~~L~l~~n~i~~-~~~---~  160 (384)
                      +|.+..    .++..+..+ ++|+.|++++|.++...+..+..   .+         ++|++|++++|++++ ..+   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            887776    356667777 78888888888876544433322   22         788888888888873 233   3


Q ss_pred             hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH-hhcCCCCCCEEEccCCCCC----cccccccccCCCCcEEEcCC
Q 016686          161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT-ALQNLNHLERLNLEQTQVS----DATLFPLSTFKELIHLSLRN  235 (384)
Q Consensus       161 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~L~~  235 (384)
                      .+..+++|++|++++|.+......        ...+ .+..+++|+.|++++|.++    ...+..+..+++|++|++++
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~--------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIE--------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHH--------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHH--------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            566778888888888887732100        0011 4667888888888888886    44566777888888899988


Q ss_pred             CCCChh----hHHhcc--CCCCCCEEEccCCccCcc----ccccc-cCCCCCCEEEccCCcCCC
Q 016686          236 ASLTDV----SLHQLS--SLSKLTNLSIRDAVLTNS----GLGSF-KPPRSLKLLDLHGGWLLT  288 (384)
Q Consensus       236 n~i~~~----~~~~l~--~~~~L~~L~l~~n~l~~~----~~~~~-~~~~~L~~L~l~~n~~~~  288 (384)
                      |.+++.    ++..+.  .+++|++|++++|.+++.    .+..+ ..+++|++|++++|++..
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            888876    445553  388899999999888873    44444 456889999999988843

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=1.1e-23  Score=192.53  Aligned_cols=255  Identities=18%  Similarity=0.220  Sum_probs=204.1

Q ss_pred             CCccEEeccCCCCCchhHHhhhcCC--CCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCch-hHHHHHhccCCcc
Q 016686           45 APLAKISLAGTTFINEREAFLYIET--SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLR  120 (384)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~  120 (384)
                      ..+++++++++.+..  ..  +..+  +.++.|++++|.+.+. +.+..+++|++|++++|.+.+. .+..+..+ ++|+
T Consensus        47 ~~~~~l~l~~~~~~~--~~--~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP--DV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCCH--HH--HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCS
T ss_pred             hhheeeccccccCCH--HH--HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCC
Confidence            458899999888873  22  2344  7899999999988766 5566789999999999998866 66777777 9999


Q ss_pred             EEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChH-HHHhhhCCCCccEEEeeCC-cCCcc-hhhcccchhhhhhHH
Q 016686          121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDY-AISYMSMMPSLKFIDISNT-DIKGF-IQQVGAETDLVLSLT  196 (384)
Q Consensus       121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~~~~  196 (384)
                      .|++++|.+++..+..+ +.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+.            
T Consensus       122 ~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------  188 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV------------  188 (336)
T ss_dssp             EEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH------------
T ss_pred             EEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH------------
Confidence            99999999987777766 56899999999999 68864 5566788999999999999 88764 344            


Q ss_pred             hhcCCC-CCCEEEccCC--CCC-cccccccccCCCCcEEEcCCCC-CChhhHHhccCCCCCCEEEccCC-ccCccccccc
Q 016686          197 ALQNLN-HLERLNLEQT--QVS-DATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSF  270 (384)
Q Consensus       197 ~~~~~~-~L~~L~l~~n--~l~-~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~  270 (384)
                      .+..++ +|++|++++|  .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++| .+.+.....+
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            567788 9999999999  566 3455667789999999999998 78778888999999999999999 4555555567


Q ss_pred             cCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhh
Q 016686          271 KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL  329 (384)
Q Consensus       271 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~  329 (384)
                      ..+++|++|++++|  ++...+..+...++.++          +++|.+++..|..++.
T Consensus       269 ~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~----------l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          269 GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ----------INCSHFTTIARPTIGN  315 (336)
T ss_dssp             GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE----------ESCCCSCCTTCSSCSS
T ss_pred             hcCCCCCEEeccCc--cCHHHHHHHHhhCcceE----------EecccCccccCCcccc
Confidence            88899999999999  46666777777777655          4578888888877664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=6.4e-24  Score=194.15  Aligned_cols=201  Identities=19%  Similarity=0.240  Sum_probs=87.8

Q ss_pred             CCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccE
Q 016686           45 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN  121 (384)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  121 (384)
                      ++++.|++++|.+++..+.  +.++++|++|++++|.+...   ..+..+++|++|++++|.+++..+..+..+ ++|+.
T Consensus        70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSE
T ss_pred             ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC-CCCCE
Confidence            4444444444444433322  12344444444444444321   233444445555555444444444444444 45555


Q ss_pred             EEccCC-CCCchHHHHHHhCCCCCCEEeccCC-CCChH-HHHhhhCCC-CccEEEeeCC--cCC-cchhhcccchhhhhh
Q 016686          122 LNLSNT-RFSSAGVGILAGHLPNLEILSLSGT-QIDDY-AISYMSMMP-SLKFIDISNT--DIK-GFIQQVGAETDLVLS  194 (384)
Q Consensus       122 L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~~~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~~~  194 (384)
                      |++++| .+++......++.+++|++|++++| .+++. .+..+..++ +|++|++++|  .++ +..+.          
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----------  216 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----------  216 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----------
Confidence            555554 3443322222334445555555544 44432 233344444 4555555544  222 11122          


Q ss_pred             HHhhcCCCCCCEEEccCCC-CCcccccccccCCCCcEEEcCCC-CCChhhHHhccCCCCCCEEEccCC
Q 016686          195 LTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDA  260 (384)
Q Consensus       195 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~L~~L~l~~n  260 (384)
                        .+..+++|+.|++++|. +++..+..+..+++|++|++++| .+.......++.+++|++|++++|
T Consensus       217 --~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          217 --LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             --HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             --HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence              23344455555555554 44434444444455555555554 233322233444555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.1e-23  Score=196.28  Aligned_cols=236  Identities=17%  Similarity=0.183  Sum_probs=188.0

Q ss_pred             CCCCCcEEEccCCCchh-----HHhhCcCCCCccEEeccCCCCCc----hhHHh-----hhcCCCCccEEEeecCCCCCc
Q 016686           20 NISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFIN----EREAF-----LYIETSLLSFLDVSNSSLSRF   85 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~-----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~-----~~~~l~~L~~L~ls~n~l~~~   85 (384)
                      .+++|++|++++|.+..     ++..+..+++|++|++++|.+..    ++..+     .+..+++|++|++++|.+...
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            68899999999999874     44456689999999999976542    22222     145889999999999999872


Q ss_pred             ------ccccCCCCccEEEeeCCCCCchhHHHHHhcc------------CCccEEEccCCCCCchHHH---HHHhCCCCC
Q 016686           86 ------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG------------ANLRNLNLSNTRFSSAGVG---ILAGHLPNL  144 (384)
Q Consensus        86 ------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~------------~~L~~L~L~~n~l~~~~~~---~~~~~l~~L  144 (384)
                            ..+..+++|++|++++|.++...+..+...+            ++|+.|++++|.++.....   ..++.+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                  4678899999999999999765555554432            6999999999999844333   233568999


Q ss_pred             CEEeccCCCCChH-----HHHhhhCCCCccEEEeeCCcCC----cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC
Q 016686          145 EILSLSGTQIDDY-----AISYMSMMPSLKFIDISNTDIK----GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  215 (384)
Q Consensus       145 ~~L~l~~n~i~~~-----~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  215 (384)
                      ++|++++|.+++.     .+..+..+++|+.|++++|.++    ..++.            .+..+++|+.|++++|.++
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~------------~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI------------ALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH------------HGGGCTTCCEEECTTCCCC
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH------------HHccCCCcCEEECCCCCCc
Confidence            9999999999843     2237778999999999999986    33444            6788999999999999999


Q ss_pred             cc----cccccc--cCCCCcEEEcCCCCCCh----hhHHhc-cCCCCCCEEEccCCccCcccc
Q 016686          216 DA----TLFPLS--TFKELIHLSLRNASLTD----VSLHQL-SSLSKLTNLSIRDAVLTNSGL  267 (384)
Q Consensus       216 ~~----~~~~l~--~~~~L~~L~L~~n~i~~----~~~~~l-~~~~~L~~L~l~~n~l~~~~~  267 (384)
                      +.    ++..+.  .+++|++|++++|.+++    .++..+ .++++|++|++++|.+++..+
T Consensus       258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            86    344553  38999999999999998    466666 668999999999999998763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3.5e-24  Score=190.49  Aligned_cols=150  Identities=17%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             EEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEeeCCCC
Q 016686           27 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMI  104 (384)
Q Consensus        27 L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l  104 (384)
                      ++..+..+..+|..+.  ++|++|++++|.++++++. .|.++++|++|++++|.+..++  .+..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            3444444445554443  3566666666666555442 2445566666666666555542  355556666666666665


Q ss_pred             CchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH-HHHhhhCCCCccEEEeeCCcCCcc
Q 016686          105 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       105 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      ++..+..+..+ ++|+.|++++|.+.+.....+ +.+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus        89 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           89 QSLALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CEECTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CccChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            54444444444 555555555555543322111 3345555555555554432 233444445555555555544443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.8e-24  Score=189.11  Aligned_cols=212  Identities=18%  Similarity=0.232  Sum_probs=141.7

Q ss_pred             ccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCC
Q 016686           88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  167 (384)
Q Consensus        88 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~  167 (384)
                      ...+++|+.|++++|.+...  ..+..+ ++|+.|++++|.+.+..  . ++.+++|++|++++|.+++..+..+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l-~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYL-PNVRYLALGGNKLHDIS--A-LKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECTTSCCCCCG--G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccceeeeeeCCCCcccc--cccccC-CCCcEEECCCCCCCCch--h-hcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            33344444444444444321  123333 44555555555444321  1 245666777777766666555555667777


Q ss_pred             ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhcc
Q 016686          168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  247 (384)
Q Consensus       168 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  247 (384)
                      |++|++++|.+.+..+.            .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus       111 L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDG------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             CCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCEEECCCCcCCccCHH------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence            77777777777766555            467778888888888888876666677788888888888888877776778


Q ss_pred             CCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCch
Q 016686          248 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT  327 (384)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~  327 (384)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|++.+         .+|.++       .+.++.|.++|.+|.++
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~-------~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCPGIR-------YLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------CTTTTH-------HHHHHHHHTGGGBBCTT
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------cCcHHH-------HHHHHHHhCCCcccCcc
Confidence            88888888888888888777777888888888888888743         244444       45566778888888887


Q ss_pred             hhhhhh
Q 016686          328 SLRASL  333 (384)
Q Consensus       328 ~~~~~l  333 (384)
                      +.+...
T Consensus       243 ~~~~~~  248 (272)
T 3rfs_A          243 GSVAPD  248 (272)
T ss_dssp             SCBCGG
T ss_pred             cccCCC
Confidence            766543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=8.7e-24  Score=187.89  Aligned_cols=223  Identities=19%  Similarity=0.208  Sum_probs=187.8

Q ss_pred             EEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccC
Q 016686           49 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN  126 (384)
Q Consensus        49 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~  126 (384)
                      .++..+..++.+|..+.    ++|++|++++|.+..++  .+..+++|++|++++|.++...+..+..+ ++|+.|++++
T Consensus        11 ~~~c~~~~l~~ip~~l~----~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCSSCCSSSC----TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTT
T ss_pred             eEEecCCCccccCCCCC----CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCC
Confidence            45566667777766432    67999999999998883  78899999999999999997777778888 9999999999


Q ss_pred             CCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc-hhhcccchhhhhhHHhhcCCCCCC
Q 016686          127 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLE  205 (384)
Q Consensus       127 n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~  205 (384)
                      |.+++..+..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+.            .+..+++|+
T Consensus        86 n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l~~L~  152 (276)
T 2z62_A           86 NPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLE  152 (276)
T ss_dssp             CCCCEECTTTT-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGCTTCC
T ss_pred             CccCccChhhh-cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch------------hhccCCCCC
Confidence            99987665554 6789999999999999876665688999999999999999874 355            688899999


Q ss_pred             EEEccCCCCCcccccccccCCCCc----EEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEc
Q 016686          206 RLNLEQTQVSDATLFPLSTFKELI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL  281 (384)
Q Consensus       206 ~L~l~~n~l~~~~~~~l~~~~~L~----~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  281 (384)
                      .|++++|.+++..+..+..+++|+    .+++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++
T Consensus       153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence            999999999998777777666666    899999999986655554 458999999999999877777888999999999


Q ss_pred             cCCcCCCHH
Q 016686          282 HGGWLLTED  290 (384)
Q Consensus       282 ~~n~~~~~~  290 (384)
                      ++|++.+.+
T Consensus       232 ~~N~~~c~c  240 (276)
T 2z62_A          232 HTNPWDCSC  240 (276)
T ss_dssp             CSSCBCCCT
T ss_pred             cCCcccccC
Confidence            999996644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.1e-23  Score=194.70  Aligned_cols=254  Identities=16%  Similarity=0.181  Sum_probs=158.2

Q ss_pred             EEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHH---hhhcCCC-CccEEEeecCCCCCc--ccccC----C-CC
Q 016686           26 CLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREA---FLYIETS-LLSFLDVSNSSLSRF--CFLTQ----M-KA   93 (384)
Q Consensus        26 ~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~ls~n~l~~~--~~~~~----~-~~   93 (384)
                      ++.++.|.+++..+.+. ..++|++|++++|.++.....   -.+.+++ +|++|++++|.+...  ..+..    . ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45667777775433333 444577888877777665430   1244666 778888877777654  22222    2 77


Q ss_pred             ccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHHH---hC-CCCCCEEeccCCCCChH----HHHh
Q 016686           94 LEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILA---GH-LPNLEILSLSGTQIDDY----AISY  161 (384)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~---~~-l~~L~~L~l~~n~i~~~----~~~~  161 (384)
                      |++|++++|.+++..+..+....    ++|+.|++++|.+++..+..+.   .. .++|++|++++|.+++.    .+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            88888888877765555444321    4778888888877665544432   22 35788888888877643    2334


Q ss_pred             hhCCC-CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCC-CCCCEEEccCCCCCccc----cccccc-CCCCcEEEcC
Q 016686          162 MSMMP-SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDAT----LFPLST-FKELIHLSLR  234 (384)
Q Consensus       162 l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~----~~~l~~-~~~L~~L~L~  234 (384)
                      +...+ +|++|++++|.+++..+..+        ...+..+ ++|++|++++|.+++..    +..+.. .++|++|+++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l--------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls  233 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAEL--------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC  233 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHH--------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHH--------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence            44554 78888888887766544310        0134445 47888888888777632    233333 4578888888


Q ss_pred             CCCCChhhH----HhccCCCCCCEEEccCCccCcccc-------ccccCCCCCCEEEccCCcCC
Q 016686          235 NASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSGL-------GSFKPPRSLKLLDLHGGWLL  287 (384)
Q Consensus       235 ~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~~L~l~~n~~~  287 (384)
                      +|.+++..+    ..+..+++|++|++++|.+.+...       ..+..+++|++|++++|.+.
T Consensus       234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            888776543    334567788888888887443322       24556677888888888873

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.3e-23  Score=186.29  Aligned_cols=196  Identities=17%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686           68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  147 (384)
                      .+++|+.|++++|.+..++.+..+++|++|++++|.+.+.  ..+..+ ++|+.|++++|.+++..+..+ +.+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEE
Confidence            3455555555555555544455555555555555555432  234444 555555555555554333222 345555555


Q ss_pred             eccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCC
Q 016686          148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  227 (384)
Q Consensus       148 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  227 (384)
                      ++++|.+++..+..+..+++|++|++++|.+++..+.            .+..+++|+.|++++|.+++..+..+..+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ  182 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------HhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence            5555555544444455555666666666655554444            3455566666666666665554444555566


Q ss_pred             CcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       228 L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      |++|++++|.+++..+..+..+++|+.|++++|++.+       .++.++.++++.|.+
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH  234 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence            6666666666665555555556666666666665543       234455555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=7e-23  Score=181.43  Aligned_cols=202  Identities=17%  Similarity=0.229  Sum_probs=133.4

Q ss_pred             CccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEE
Q 016686           46 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN  123 (384)
Q Consensus        46 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  123 (384)
                      ..+.++++++.++.++..+.    +.+++|++++|.+..++  .+..+++|++|++++|.++...+..+           
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~-----------   81 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-----------   81 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT-----------
T ss_pred             CCCEEEccCCCCCccCCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh-----------
Confidence            45666666666666554321    45666666666665552  45556666666666665553222222           


Q ss_pred             ccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC
Q 016686          124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH  203 (384)
Q Consensus       124 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  203 (384)
                                     +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.            .+..+++
T Consensus        82 ---------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~  134 (270)
T 2o6q_A           82 ---------------KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTK  134 (270)
T ss_dssp             ---------------SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTT
T ss_pred             ---------------cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcC
Confidence                           3345555555555555544444555666777777777777666555            4667777


Q ss_pred             CCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccC
Q 016686          204 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG  283 (384)
Q Consensus       204 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  283 (384)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            88888888877776655677778888888888887776666677788888888888888876666677778888888888


Q ss_pred             CcCCCH
Q 016686          284 GWLLTE  289 (384)
Q Consensus       284 n~~~~~  289 (384)
                      |++.+.
T Consensus       215 N~~~c~  220 (270)
T 2o6q_A          215 NPWDCT  220 (270)
T ss_dssp             SCBCCS
T ss_pred             CCeeCC
Confidence            877543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6.3e-23  Score=181.69  Aligned_cols=202  Identities=17%  Similarity=0.266  Sum_probs=146.3

Q ss_pred             CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEe
Q 016686           22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDL   99 (384)
Q Consensus        22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L   99 (384)
                      .+.++++++++.++.+|..+.  +++++|++++|.++.+++. .|.++++|++|++++|.+..++  .+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            368899999999999987665  7899999999999988764 4679999999999999998873  4678999999999


Q ss_pred             eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686          100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  179 (384)
Q Consensus       100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  179 (384)
                      ++|.+....+..+..+ ++|+.|++++|.+++                         ..+..+..+++|++|++++|.+.
T Consensus        93 ~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQL-VNLAELRLDRNQLKS-------------------------LPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CSSCCCCCCTTTTTTC-SSCCEEECCSSCCCC-------------------------CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCcCCHhHcccc-cCCCEEECCCCccCe-------------------------eCHHHhCcCcCCCEEECCCCcCC
Confidence            9998885544444444 556666665555543                         33334445556666666666665


Q ss_pred             cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686          180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  259 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~  259 (384)
                      +..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       147 ~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          147 SLPKG------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccCHh------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            55444            456666777777777777666555566677777777777777766555667777777777777


Q ss_pred             CccCc
Q 016686          260 AVLTN  264 (384)
Q Consensus       260 n~l~~  264 (384)
                      |++..
T Consensus       215 N~~~c  219 (270)
T 2o6q_A          215 NPWDC  219 (270)
T ss_dssp             SCBCC
T ss_pred             CCeeC
Confidence            77654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=9.5e-23  Score=188.34  Aligned_cols=283  Identities=16%  Similarity=0.136  Sum_probs=205.5

Q ss_pred             EEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc------ccccCCC-CccEEEeeCCCCCchhHHHHHhc----cC
Q 016686           49 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF------CFLTQMK-ALEHLDLSSSMIGDDSVEMVACV----GA  117 (384)
Q Consensus        49 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~----~~  117 (384)
                      ...+++|.+++..+.+ +...++|++|++++|.+...      ..+..++ +|++|++++|.+++..+..+..+    .+
T Consensus         2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4678899999877664 33445699999999998776      3567788 89999999999998777777663    27


Q ss_pred             CccEEEccCCCCCchHHHHHH---hCC-CCCCEEeccCCCCChHHHHhhh----C-CCCccEEEeeCCcCCcchhhcccc
Q 016686          118 NLRNLNLSNTRFSSAGVGILA---GHL-PNLEILSLSGTQIDDYAISYMS----M-MPSLKFIDISNTDIKGFIQQVGAE  188 (384)
Q Consensus       118 ~L~~L~L~~n~l~~~~~~~~~---~~l-~~L~~L~l~~n~i~~~~~~~l~----~-~~~L~~L~l~~n~l~~~~~~~~~~  188 (384)
                      +|+.|++++|.+++..+..+.   ..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++.....   
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~---  157 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE---  157 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH---
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH---
Confidence            899999999999866554332   334 8999999999999876655543    3 469999999999998543321   


Q ss_pred             hhhhhhHHhhcCCC-CCCEEEccCCCCCcccccccc----cC-CCCcEEEcCCCCCChh----hHHhccC-CCCCCEEEc
Q 016686          189 TDLVLSLTALQNLN-HLERLNLEQTQVSDATLFPLS----TF-KELIHLSLRNASLTDV----SLHQLSS-LSKLTNLSI  257 (384)
Q Consensus       189 ~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~----~~-~~L~~L~L~~n~i~~~----~~~~l~~-~~~L~~L~l  257 (384)
                           -...+...+ +|++|++++|.+++..+..+.    .+ ++|++|++++|.+++.    ++..+.. .++|++|++
T Consensus       158 -----l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          158 -----LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             -----HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred             -----HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence                 001445555 999999999999887665443    45 5999999999999874    3445554 569999999


Q ss_pred             cCCccCccccc----cccCCCCCCEEEccCCcC--CCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhh
Q 016686          258 RDAVLTNSGLG----SFKPPRSLKLLDLHGGWL--LTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA  331 (384)
Q Consensus       258 ~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~  331 (384)
                      ++|.+++.++.    .+..+++|++|++++|.+  ++......+...++.+.-    ...+++++|.+.+..+..+...-
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~----L~~LdL~~N~l~~~~~~~~~~~l  308 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK----IILVDKNGKEIHPSHSIPISNLI  308 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE----EEEECTTSCBCCGGGCHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc----eEEEecCCCcCCCcchHHHHHHH
Confidence            99999987653    446678999999999982  255666666665554431    12678999998876555544322


Q ss_pred             hhhhhcCCCCCCch
Q 016686          332 SLVKQKQDPMPMSH  345 (384)
Q Consensus       332 ~l~n~l~~~ip~~~  345 (384)
                      +- ....+.+|..+
T Consensus       309 ~~-~~~~~~~psll  321 (362)
T 3goz_A          309 RE-LSGKADVPSLL  321 (362)
T ss_dssp             HH-HHTCCCTTTC-
T ss_pred             HH-CCCCcchHHHH
Confidence            21 22344566654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=9.4e-23  Score=182.30  Aligned_cols=207  Identities=25%  Similarity=0.265  Sum_probs=147.9

Q ss_pred             CCCCccEEEeecCCCCCcc-cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCE
Q 016686           68 ETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI  146 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  146 (384)
                      +++++++++++++.++.++ .+  .++++.|++++|.+++..+..+..+ ++|+.|++++|.+++....   +.+++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~   81 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGT   81 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCE
T ss_pred             ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCE
Confidence            4445555555555554442 11  1345555555555554444455555 5666666666655543221   35677777


Q ss_pred             EeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCC
Q 016686          147 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  226 (384)
Q Consensus       147 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  226 (384)
                      |++++|.++ ..|..+..+++|++|++++|++++..+.            .+..+++|+.|++++|++++..+..+..++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhccccc
Confidence            777777776 3344566788889999999988877666            688889999999999999987777788899


Q ss_pred             CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHH
Q 016686          227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ  294 (384)
Q Consensus       227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  294 (384)
                      +|+.|++++|++++..+..+..+++|++|++++|+++. .|..+...++|+.+++++|++.+.+.+..
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~~~~  215 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEILY  215 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCccHH
Confidence            99999999999998777778889999999999999986 55666677899999999999977665433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.9e-23  Score=184.15  Aligned_cols=203  Identities=15%  Similarity=0.154  Sum_probs=119.8

Q ss_pred             CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEE
Q 016686           18 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL   97 (384)
Q Consensus        18 l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L   97 (384)
                      +++++++++++++++.++.+|..+.  +++++|++++|.++.+++. .|..+++|++|++++|.++.++....+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            3466778888888888887776665  6788888888888876554 366788888888888888777555677777777


Q ss_pred             EeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc
Q 016686           98 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD  177 (384)
Q Consensus        98 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~  177 (384)
                      ++++|.+. .+|..+..+ ++|+.|++++|++++                         ..+..|..+++|++|++++|.
T Consensus        83 ~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~-------------------------l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTS-------------------------LPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCC-------------------------CCSSTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCC-cCchhhccC-CCCCEEECCCCcCcc-------------------------cCHHHHcCCCCCCEEECCCCC
Confidence            77777776 233333334 455555555555443                         333334444444455555544


Q ss_pred             CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686          178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  257 (384)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l  257 (384)
                      +.+..+.            .+..+++|+.|++++|++++..+..+..+++|++|++++|+++. +|..+...++|+.+++
T Consensus       136 l~~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          136 LKTLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             CCCCCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEEC
T ss_pred             CCccChh------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEe
Confidence            4444333            34444555555555555554433344445555555555555553 3334444455555555


Q ss_pred             cCCccC
Q 016686          258 RDAVLT  263 (384)
Q Consensus       258 ~~n~l~  263 (384)
                      ++|++.
T Consensus       203 ~~Np~~  208 (290)
T 1p9a_G          203 HGNPWL  208 (290)
T ss_dssp             CSCCBC
T ss_pred             CCCCcc
Confidence            555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=4e-22  Score=196.19  Aligned_cols=292  Identities=20%  Similarity=0.239  Sum_probs=186.4

Q ss_pred             CCCCcEEEccCCCCCC--------CC-CCCCCcEEEccCCC--ch--hHHhhCcCCCCccEEeccCC-CCCchhHHhh--
Q 016686            2 FPRLSFLNLAWTGVTK--------LP-NISSLECLNLSNCT--ID--SILEGNENKAPLAKISLAGT-TFINEREAFL--   65 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~--------l~-~~~~L~~L~ls~n~--i~--~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~--   65 (384)
                      +++|++|++++|.+++        ++ .+++|++|++++|.  +.  .+......+++|++|++++| .+++++..+.  
T Consensus       155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred             CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence            6788999998887543        22 67788888888876  32  23322235677788877776 2222111110  


Q ss_pred             --------------------------------------------------hcCCCCccEEEeecCCCCCc---ccccCCC
Q 016686           66 --------------------------------------------------YIETSLLSFLDVSNSSLSRF---CFLTQMK   92 (384)
Q Consensus        66 --------------------------------------------------~~~l~~L~~L~ls~n~l~~~---~~~~~~~   92 (384)
                                                                        +..+++|++|++++|.+...   ..+..++
T Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~  314 (594)
T 2p1m_B          235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP  314 (594)
T ss_dssp             TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred             CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence                                                              11345666666666664432   1244566


Q ss_pred             CccEEEeeCCCCCchhHHHHH-hccCCccEEEcc---------CCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhh
Q 016686           93 ALEHLDLSSSMIGDDSVEMVA-CVGANLRNLNLS---------NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM  162 (384)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~L~---------~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l  162 (384)
                      +|++|++++| +.+.....+. .+ ++|+.|++.         .+.++......+...+++|++|.+..+.+++..+..+
T Consensus       315 ~L~~L~l~~~-~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l  392 (594)
T 2p1m_B          315 KLQRLWVLDY-IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI  392 (594)
T ss_dssp             TCCEEEEEGG-GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred             CcCEEeCcCc-cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence            6666666666 3333333333 34 677777762         2455655555554456777777777777776665555


Q ss_pred             h-CCCCccEEEee--C----CcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccccc-CCCCcEEEcC
Q 016686          163 S-MMPSLKFIDIS--N----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIHLSLR  234 (384)
Q Consensus       163 ~-~~~~L~~L~l~--~----n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~L~  234 (384)
                      . .+++|+.|+++  +    +.+++.....     .+.  ..+..+++|+.|++++ .+++..+..+.. +++|++|+++
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-----~~~--~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~  464 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-----GFG--AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA  464 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCTHH-----HHH--HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HhhCCCcceeEeecccCCCcccccCCchhh-----HHH--HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeecc
Confidence            4 47778888877  3    3444211100     000  0245678889999877 677666566654 8889999999


Q ss_pred             CCCCChhhHHhc-cCCCCCCEEEccCCccCccccc-cccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCcee
Q 016686          235 NASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV  304 (384)
Q Consensus       235 ~n~i~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~  304 (384)
                      +|.+++..+..+ ..+++|++|++++|.+++.++. ....+++|++|++++|++ +..++..+...+|.+.+
T Consensus       465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i  535 (594)
T 2p1m_B          465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNV  535 (594)
T ss_dssp             SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEE
T ss_pred             CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEE
Confidence            999888766666 6689999999999998766554 334468999999999998 78888888888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=1.9e-22  Score=198.57  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=58.1

Q ss_pred             CCCCcEEEccCC-CCCC--C----CCCCCCcEEEccCCCchh-----HHhhCcCCCCccEEeccCCC--CCchhHHhhhc
Q 016686            2 FPRLSFLNLAWT-GVTK--L----PNISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTT--FINEREAFLYI   67 (384)
Q Consensus         2 l~~L~~L~l~~n-~i~~--l----~~~~~L~~L~ls~n~i~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~   67 (384)
                      +++|++|++++| .++.  +    ..+++|++|++++|.++.     ++.....+++|++|++++|.  ++.........
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~  208 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT  208 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence            689999999998 4543  2    278999999999998763     33333378999999999986  33211111134


Q ss_pred             CCCCccEEEeecC
Q 016686           68 ETSLLSFLDVSNS   80 (384)
Q Consensus        68 ~l~~L~~L~ls~n   80 (384)
                      ++++|++|++++|
T Consensus       209 ~~~~L~~L~L~~~  221 (594)
T 2p1m_B          209 RCPNLKSLKLNRA  221 (594)
T ss_dssp             HCTTCCEEECCTT
T ss_pred             hCCCCcEEecCCC
Confidence            6799999999988

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=5.8e-22  Score=178.85  Aligned_cols=193  Identities=21%  Similarity=0.351  Sum_probs=153.6

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL   99 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L   99 (384)
                      .+++|++|++++|.+..++ .+..+++|++|++++|.++.+++   +..+++|++|++++|.+...+.+..+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence            5678888888888888775 56678888888888888887765   4588888888888888888877888888888888


Q ss_pred             eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686          100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  179 (384)
Q Consensus       100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  179 (384)
                      ++|.+++..  .+..+ ++|+.|++++|.+++..+   ++.+++|++|++++|.+++..+  +..+++|+.|++++|.+.
T Consensus       115 ~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          115 TSTQITDVT--PLAGL-SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             TTSCCCCCG--GGTTC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCch--hhcCC-CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            888887543  26666 888888888888876544   3568888999998888876543  778888999999988887


Q ss_pred             cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh
Q 016686          180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  240 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~  240 (384)
                      +..              .+..+++|+.|++++|.+++..  .+..+++|++|++++|.+++
T Consensus       187 ~~~--------------~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DIS--------------PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCG--------------GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCh--------------hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            653              2567788999999999888764  37788889999998888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4.5e-22  Score=179.54  Aligned_cols=195  Identities=22%  Similarity=0.379  Sum_probs=166.6

Q ss_pred             CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEE
Q 016686           43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  122 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  122 (384)
                      .+++|++|++++|.++.++ .  +..+++|++|++++|.+..++.+..+++|++|++++|.+.+.  ..+..+ ++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l-~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-G--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGL-QSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-T--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTC-TTCCEE
T ss_pred             HcCCcCEEEeeCCCccCch-h--hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCC-CCCCEE
Confidence            5688999999999998875 2  458899999999999999886699999999999999999864  357777 899999


Q ss_pred             EccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC
Q 016686          123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN  202 (384)
Q Consensus       123 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  202 (384)
                      ++++|.+++...   ++.+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..              .+..++
T Consensus       113 ~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------------~l~~l~  173 (308)
T 1h6u_A          113 DLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--------------PLANLS  173 (308)
T ss_dssp             ECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------------GGTTCT
T ss_pred             ECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh--------------hhcCCC
Confidence            999999987543   4678999999999999986644  888999999999999988652              366889


Q ss_pred             CCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686          203 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  266 (384)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  266 (384)
                      +|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++..
T Consensus       174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            99999999999988644  788999999999999999865  3889999999999999997743

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=183.67  Aligned_cols=229  Identities=15%  Similarity=0.110  Sum_probs=168.3

Q ss_pred             CCCCccEEeccCCCCCch--hHHhhhcCCCCccEEEeecCCCCCc--ccc--cCCCCccEEEeeCCCCCchhH----HHH
Q 016686           43 NKAPLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMV  112 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~--~~~--~~~~~L~~L~L~~n~l~~~~~----~~~  112 (384)
                      ....++.+.+.++.++..  .....+..+++|++|++++|.+.+.  ..+  ..+++|++|++++|.+++..+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            445678888888887642  2222223457799999999988765  334  778899999999998886432    233


Q ss_pred             HhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH--H--HhhhCCCCccEEEeeCCcCCcchhhcccc
Q 016686          113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--I--SYMSMMPSLKFIDISNTDIKGFIQQVGAE  188 (384)
Q Consensus       113 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  188 (384)
                      ..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|++.+..  +  ..+..+++|++|++++|.++......   
T Consensus       142 ~~~-~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~---  216 (310)
T 4glp_A          142 WLK-PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC---  216 (310)
T ss_dssp             TBC-SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH---
T ss_pred             hhc-cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH---
Confidence            445 899999999999876655544 57889999999999876532  1  12357888999999999987542210   


Q ss_pred             hhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccC---CCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686          189 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       189 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                            ...+..+++|++|++++|.+++..|..+..+   ++|++|++++|+++. +|..+.  ++|++|++++|++++.
T Consensus       217 ------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          217 ------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             ------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC
T ss_pred             ------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC
Confidence                  0024677899999999999998767666665   689999999999985 455554  7999999999999874


Q ss_pred             ccccccCCCCCCEEEccCCcCC
Q 016686          266 GLGSFKPPRSLKLLDLHGGWLL  287 (384)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~n~~~  287 (384)
                       + .+..+++|+.|++++|++.
T Consensus       288 -~-~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          288 -P-QPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -C-CTTSCCCCSCEECSSTTTS
T ss_pred             -c-hhhhCCCccEEECcCCCCC
Confidence             2 2567789999999999873

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=177.48  Aligned_cols=225  Identities=16%  Similarity=0.160  Sum_probs=166.7

Q ss_pred             CCcEEEccCCCchh--HHhh--CcCCCCccEEeccCCCCCchhHHhhh-cCCCCccEEEeecCCCCCc------ccccCC
Q 016686           23 SLECLNLSNCTIDS--ILEG--NENKAPLAKISLAGTTFINEREAFLY-IETSLLSFLDVSNSSLSRF------CFLTQM   91 (384)
Q Consensus        23 ~L~~L~ls~n~i~~--~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~------~~~~~~   91 (384)
                      .++.+.+.++.+..  +...  ...+++|++|++++|.+++..+...+ ..+++|++|++++|.+...      ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            57888888887752  2211  11456799999999988865543212 6788999999999988763      233468


Q ss_pred             CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHH---HHHHhCCCCCCEEeccCCCCChHH--HH-hhhCC
Q 016686           92 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYA--IS-YMSMM  165 (384)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~~--~~-~l~~~  165 (384)
                      ++|++|++++|.+.+..+..+..+ ++|+.|++++|++.+...   ..+.+.+++|++|++++|.++...  +. .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            899999999999987777777777 899999999998765322   122246788999999999987332  22 34678


Q ss_pred             CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCC---CCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhh
Q 016686          166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL---NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS  242 (384)
Q Consensus       166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~  242 (384)
                      ++|++|++++|.+.+..|.            .+..+   ++|++|++++|.++. +|..+.  ++|++|++++|++++. 
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~------------~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-  287 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNP------------SAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-  287 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCS------------CCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-
T ss_pred             CCCCEEECCCCCCCccchh------------hHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-
Confidence            8999999999999887554            34444   689999999999885 455543  7899999999999874 


Q ss_pred             HHhccCCCCCCEEEccCCccCcc
Q 016686          243 LHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       243 ~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      | .+..+++|+.|++++|++++.
T Consensus       288 ~-~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          288 P-QPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             C-CTTSCCCCSCEECSSTTTSCC
T ss_pred             c-hhhhCCCccEEECcCCCCCCC
Confidence            2 257789999999999998763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.5e-21  Score=169.59  Aligned_cols=197  Identities=14%  Similarity=0.126  Sum_probs=89.7

Q ss_pred             CccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC-CCCcc--cccCCCCccEEEeeC-CCCCchhHHHHHhccCCccE
Q 016686           46 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRFC--FLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN  121 (384)
Q Consensus        46 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~--~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~  121 (384)
                      +|++|++++|.++.+++. .|.++++|++|++++|. ++.++  .+..+++|++|++++ |.++...+..+..+ ++|+.
T Consensus        32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred             cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence            455555555555554432 23455555555555554 44442  344455555555554 44443333333333 44444


Q ss_pred             EEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCC-cCCcchhhcccchhhhhhHHhhcC
Q 016686          122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT-DIKGFIQQVGAETDLVLSLTALQN  200 (384)
Q Consensus       122 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~~  200 (384)
                      |++++|.+++. +.  ++.+++|+                     .|+.|++++| .+.+..+.            .+..
T Consensus       110 L~l~~n~l~~l-p~--~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~------------~~~~  153 (239)
T 2xwt_C          110 LGIFNTGLKMF-PD--LTKVYSTD---------------------IFFILEITDNPYMTSIPVN------------AFQG  153 (239)
T ss_dssp             EEEEEECCCSC-CC--CTTCCBCC---------------------SEEEEEEESCTTCCEECTT------------TTTT
T ss_pred             EeCCCCCCccc-cc--cccccccc---------------------cccEEECCCCcchhhcCcc------------cccc
Confidence            44444443321 10  11222222                     0114444444 44433333            3444


Q ss_pred             CCCCC-EEEccCCCCCcccccccccCCCCcEEEcCCCC-CChhhHHhccCC-CCCCEEEccCCccCccccccccCCCCCC
Q 016686          201 LNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLK  277 (384)
Q Consensus       201 ~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~  277 (384)
                      +++|+ .|++++|.++...+..+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|++++..+.   .+++|+
T Consensus       154 l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~  229 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLK  229 (239)
T ss_dssp             TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCS
T ss_pred             hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCc
Confidence            45555 5555555555332222222 455555555553 555444455555 5566666666655543222   345566


Q ss_pred             EEEccCC
Q 016686          278 LLDLHGG  284 (384)
Q Consensus       278 ~L~l~~n  284 (384)
                      .|+++++
T Consensus       230 ~L~l~~~  236 (239)
T 2xwt_C          230 ELIARNT  236 (239)
T ss_dssp             EEECTTC
T ss_pred             eeeccCc
Confidence            6665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=6.1e-21  Score=167.00  Aligned_cols=160  Identities=19%  Similarity=0.287  Sum_probs=117.9

Q ss_pred             CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686          117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  196 (384)
Q Consensus       117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  196 (384)
                      +.++.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.            
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------  101 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG------------  101 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------
T ss_pred             CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh------------
Confidence            345555555555554433333 4466677777776666665555666777778888887777766655            


Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  276 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  276 (384)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            56777888888888888887666667788888888888888887777678888888888888888888777778888888


Q ss_pred             CEEEccCCcCCCH
Q 016686          277 KLLDLHGGWLLTE  289 (384)
Q Consensus       277 ~~L~l~~n~~~~~  289 (384)
                      +.|++++|++.+.
T Consensus       182 ~~L~l~~N~~~c~  194 (251)
T 3m19_A          182 QTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSCCBCTT
T ss_pred             CEEEeeCCceeCC
Confidence            9999998888554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.7e-21  Score=169.24  Aligned_cols=180  Identities=16%  Similarity=0.200  Sum_probs=139.5

Q ss_pred             CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccC-CCCChHHHHhhhCCCCcc
Q 016686           92 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLK  169 (384)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~~~~L~  169 (384)
                      +++++|++++|.+++..+..+..+ ++|+.|++++|. ++...+..+ +.+++|++|++++ |.++...+..|..+++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            356666666666665544455555 677777777775 554433333 5678888888887 888766666778888999


Q ss_pred             EEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCC---EEEccCC-CCCcccccccccCCCCc-EEEcCCCCCChhhHH
Q 016686          170 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE---RLNLEQT-QVSDATLFPLSTFKELI-HLSLRNASLTDVSLH  244 (384)
Q Consensus       170 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~~~~L~-~L~L~~n~i~~~~~~  244 (384)
                      +|++++|.+++. |.             +..+++|+   .|++++| .+++..+..+..+++|+ +|++++|+++...+.
T Consensus       109 ~L~l~~n~l~~l-p~-------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~  174 (239)
T 2xwt_C          109 FLGIFNTGLKMF-PD-------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY  174 (239)
T ss_dssp             EEEEEEECCCSC-CC-------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred             EEeCCCCCCccc-cc-------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence            999999988764 22             55667777   9999999 99998777899999999 999999999975555


Q ss_pred             hccCCCCCCEEEccCCc-cCccccccccCC-CCCCEEEccCCcCCC
Q 016686          245 QLSSLSKLTNLSIRDAV-LTNSGLGSFKPP-RSLKLLDLHGGWLLT  288 (384)
Q Consensus       245 ~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~~  288 (384)
                      .+.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++.+
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            5555 899999999995 998777888999 999999999999844

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=2e-20  Score=163.70  Aligned_cols=159  Identities=21%  Similarity=0.311  Sum_probs=105.4

Q ss_pred             CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEE
Q 016686           93 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  172 (384)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  172 (384)
                      .++.|++++|.+.+..+..+..+ ++|+.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+..+++|++|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            44555555555544444444444 555555555555554333322 3456666666666666655555566777777777


Q ss_pred             eeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCC
Q 016686          173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  252 (384)
Q Consensus       173 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L  252 (384)
                      +++|.+++..+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus       114 L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          114 LGGNQLKSLPSG------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             CCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCCCcCCCcChh------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            777777766555            46677788888888888877666667778888888888888887776677788888


Q ss_pred             CEEEccCCccCcc
Q 016686          253 TNLSIRDAVLTNS  265 (384)
Q Consensus       253 ~~L~l~~n~l~~~  265 (384)
                      ++|++++|++...
T Consensus       182 ~~L~l~~N~~~c~  194 (251)
T 3m19_A          182 QTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSCCBCTT
T ss_pred             CEEEeeCCceeCC
Confidence            8888888887653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=2.2e-19  Score=160.58  Aligned_cols=184  Identities=23%  Similarity=0.338  Sum_probs=140.4

Q ss_pred             EccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc
Q 016686            9 NLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF   85 (384)
Q Consensus         9 ~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~   85 (384)
                      ++..+.++++   ..+++|++|++++|.+..++ .+..+++|++|++++|.++++++   +.++++|++|++++|.+..+
T Consensus        30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG
T ss_pred             HhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC
Confidence            3444444442   35678888888888888774 35678888888888888887765   45888888888888888888


Q ss_pred             ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCC
Q 016686           86 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  165 (384)
Q Consensus        86 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~  165 (384)
                      +.+..+++|++|++++|.+++.  ..+..+ ++|+.|++++|.+++.  .. ++.+++|++|++++|.+++..+  +..+
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l-~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l  177 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIVP--LAGL  177 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC--GGGGGC-TTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             hhhccCCCCCEEECCCCcCCCC--hhhcCC-CCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCCccccchh--hcCC
Confidence            7788888888888888888753  356666 8888888888888765  22 3568888888888888876654  7788


Q ss_pred             CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686          166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  218 (384)
Q Consensus       166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  218 (384)
                      ++|+.|++++|.+++. +             .+..+++|+.|++++|.++...
T Consensus       178 ~~L~~L~L~~N~i~~l-~-------------~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          178 TKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             TTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEEEEEEEEECCC
T ss_pred             CccCEEECCCCcCCCC-h-------------hhccCCCCCEEECcCCcccCCc
Confidence            8888888888888764 2             4677888888888888877643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.6e-19  Score=153.26  Aligned_cols=182  Identities=16%  Similarity=0.163  Sum_probs=145.8

Q ss_pred             ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhh
Q 016686          119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  198 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  198 (384)
                      -+.++++++.++....    +..+++++|++++|.+++..+..+..+++|++|++++|.+.+..+.            .+
T Consensus         9 ~~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~   72 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------VF   72 (208)
T ss_dssp             TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TT
T ss_pred             CCEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------hc
Confidence            4566777776653321    2346788999998888876666678889999999999998877665            57


Q ss_pred             cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCE
Q 016686          199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL  278 (384)
Q Consensus       199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  278 (384)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            88899999999999999877777888999999999999999877777889999999999999999877777888899999


Q ss_pred             EEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhh
Q 016686          279 LDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRAS  332 (384)
Q Consensus       279 L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~  332 (384)
                      |++++|.+.+         .++.++       .++++.|.++|.+|++++.++.
T Consensus       153 L~l~~N~~~~---------~~~~l~-------~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          153 IWLHDNPWDC---------TCPGIR-------YLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             EECCSCCBCC---------CTTTTH-------HHHHHHHHCTTTBBCTTSSBCT
T ss_pred             EEecCCCeec---------CCCCHH-------HHHHHHHhCCceeeccCccccC
Confidence            9999998743         344454       5667778888888888876653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.2e-19  Score=166.61  Aligned_cols=237  Identities=14%  Similarity=0.092  Sum_probs=112.5

Q ss_pred             cEEEccCCCCCCCCC-C-CCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccE-EEeecCC
Q 016686            6 SFLNLAWTGVTKLPN-I-SSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSF-LDVSNSS   81 (384)
Q Consensus         6 ~~L~l~~n~i~~l~~-~-~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~ls~n~   81 (384)
                      ++++.++++++.+|. + +++++|++++|+|+.+|+..+ .+++|++|++++|.+.+..+.-.|.+++++++ +.+..|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            445555555665552 2 356666666666666555433 56666666666665543222223445555443 3344455


Q ss_pred             CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      +..+  ..+..+++|++|++++|.+....+..+... ..+..+++.++                        +.+....+
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~------------------------~~i~~l~~  146 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDN------------------------INIHTIER  146 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESC------------------------TTCCEECT
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhccc-chhhhhhhccc------------------------cccccccc
Confidence            5554  245555566666666655553322222222 33444444332                        22332222


Q ss_pred             HhhhCCC-CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccC-CCCCcccccccccCCCCcEEEcCCCC
Q 016686          160 SYMSMMP-SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNAS  237 (384)
Q Consensus       160 ~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~L~~n~  237 (384)
                      ..|..+. .++.|++++|.++...+.            .+ ...+++.+++.+ |.++.+.+..+..+++|++|++++|+
T Consensus       147 ~~f~~~~~~l~~L~L~~N~i~~i~~~------------~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          147 NSFVGLSFESVILWLNKNGIQEIHNS------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTT------------SS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             cchhhcchhhhhhccccccccCCChh------------hc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence            2233322 355555555555543333            12 223455555543 44444444445555666666666666


Q ss_pred             CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCC
Q 016686          238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  284 (384)
Q Consensus       238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  284 (384)
                      ++...+..   +.+|++|.+.++.--...| .+..+++|+.+++.++
T Consensus       214 l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          214 IHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             cCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            65543322   3344444444432212222 2455566777776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=7e-19  Score=157.24  Aligned_cols=190  Identities=23%  Similarity=0.274  Sum_probs=129.1

Q ss_pred             cEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCC
Q 016686           48 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT  127 (384)
Q Consensus        48 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n  127 (384)
                      ..+.+..+.+++...   +..+++|+.|++++|.+..++.+..+++|++|++++|.+++..+  +..+ ++|+.|++++|
T Consensus        27 ~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSS
T ss_pred             HHHHhcCCCcccccc---hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCC
Confidence            334444555544321   22456777777777777766667777777777777777765433  5566 77777777777


Q ss_pred             CCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEE
Q 016686          128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL  207 (384)
Q Consensus       128 ~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  207 (384)
                      .+++...   ++.+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  .            .+..+++|+.|
T Consensus       101 ~l~~~~~---l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~------------~l~~l~~L~~L  161 (291)
T 1h6t_A          101 KVKDLSS---LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDTL  161 (291)
T ss_dssp             CCCCGGG---GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEE
T ss_pred             cCCCChh---hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h------------hhccCCCCCEE
Confidence            7765322   35677777777777777654  3566777788888887777665  2            46677788888


Q ss_pred             EccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686          208 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  266 (384)
Q Consensus       208 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  266 (384)
                      ++++|.+++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|+++...
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCc
Confidence            888888777544  677788888888888877642  4777788888888888776643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=2.1e-19  Score=165.02  Aligned_cols=216  Identities=14%  Similarity=0.099  Sum_probs=145.8

Q ss_pred             cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccE-EEee
Q 016686           25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEH-LDLS  100 (384)
Q Consensus        25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~-L~L~  100 (384)
                      ++++.++++++++|..+.  +++++|++++|.++.+++. .|.++++|++|++++|.+...   ..|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            567778888888887664  5788888888888877764 366788888888888876543   34566666554 4455


Q ss_pred             CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeC-CcCC
Q 016686          101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN-TDIK  179 (384)
Q Consensus       101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~-n~l~  179 (384)
                      +|++....+..+..                          +++|++|++++|.+....+..+.....+..+++.+ +.+.
T Consensus        89 ~N~l~~l~~~~f~~--------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           89 ANNLLYINPEAFQN--------------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             ETTCCEECTTSBCC--------------------------CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred             CCcccccCchhhhh--------------------------ccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence            56665444443444                          44555555555544433323333455677788866 4565


Q ss_pred             cchhhcccchhhhhhHHhhcCC-CCCCEEEccCCCCCcccccccccCCCCcEEEcCC-CCCChhhHHhccCCCCCCEEEc
Q 016686          180 GFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN-ASLTDVSLHQLSSLSKLTNLSI  257 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~~~L~~L~l  257 (384)
                      ...+.            .+..+ ..++.|++++|.++.+.+.. ....+|+++++.+ |.++...+..|..+++|++|++
T Consensus       143 ~l~~~------------~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          143 TIERN------------SFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             EECTT------------SSTTSBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred             ccccc------------chhhcchhhhhhccccccccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence            55444            45554 46889999999999865444 4567899999975 6788776778899999999999


Q ss_pred             cCCccCccccccccCCCCCCEEEccCCc
Q 016686          258 RDAVLTNSGLGSFKPPRSLKLLDLHGGW  285 (384)
Q Consensus       258 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~  285 (384)
                      ++|+++...+..+   .+|+.|.+.++.
T Consensus       210 s~N~l~~lp~~~~---~~L~~L~~l~~~  234 (350)
T 4ay9_X          210 SRTRIHSLPSYGL---ENLKKLRARSTY  234 (350)
T ss_dssp             TTSCCCCCCSSSC---TTCCEEECTTCT
T ss_pred             CCCCcCccChhhh---ccchHhhhccCC
Confidence            9999998655444   556666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.3e-19  Score=177.28  Aligned_cols=184  Identities=23%  Similarity=0.330  Sum_probs=137.9

Q ss_pred             EEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCC
Q 016686            8 LNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR   84 (384)
Q Consensus         8 L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~   84 (384)
                      ++++.+.+..+   ..+++|+.|++++|.+..++ .+..+++|++|+|++|.++++++   +..+++|+.|+|++|.+..
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC
Confidence            34455555542   25677888888888887765 46678888888888888887765   4578888888888888887


Q ss_pred             cccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhC
Q 016686           85 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM  164 (384)
Q Consensus        85 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  164 (384)
                      ++.+..+++|+.|++++|.+.+.  ..+..+ ++|+.|++++|.+++.  . .++.+++|+.|++++|.+.+..+  +..
T Consensus       102 l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~  173 (605)
T 1m9s_A          102 LSSLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDIVP--LAG  173 (605)
T ss_dssp             CTTSTTCTTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             ChhhccCCCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCCCchh--hcc
Confidence            77788888888888888888753  346666 8888888888888765  2 23567888888888888876655  778


Q ss_pred             CCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc
Q 016686          165 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA  217 (384)
Q Consensus       165 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  217 (384)
                      +++|+.|++++|.+.+. +             .+..+++|+.|++++|.+.+.
T Consensus       174 l~~L~~L~Ls~N~i~~l-~-------------~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          174 LTKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCCEEECcCCCCCCC-h-------------HHccCCCCCEEEccCCcCcCC
Confidence            88888888888888764 2             467788888888888877664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=7.2e-19  Score=171.97  Aligned_cols=192  Identities=22%  Similarity=0.272  Sum_probs=125.4

Q ss_pred             ccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccC
Q 016686           47 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN  126 (384)
Q Consensus        47 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~  126 (384)
                      +..+.+..+.+..+..   +..++.|+.|++++|.+..++.+..+++|+.|+|++|.+.+..+  +..+ ++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCS
T ss_pred             HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcC
Confidence            3344444444444322   22456666666666666666666666666677776666665433  5555 6677777777


Q ss_pred             CCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCE
Q 016686          127 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER  206 (384)
Q Consensus       127 n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  206 (384)
                      |.+.+..  . ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.  .            .+..+++|+.
T Consensus        97 N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~------------~l~~l~~L~~  157 (605)
T 1m9s_A           97 NKIKDLS--S-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDT  157 (605)
T ss_dssp             SCCCCCT--T-STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G------------GGGSCTTCSE
T ss_pred             CCCCCCh--h-hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h------------hhcccCCCCE
Confidence            7665432  2 24567777777777777653  3466777777777777777665  2            4667777888


Q ss_pred             EEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcccc
Q 016686          207 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  267 (384)
Q Consensus       207 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  267 (384)
                      |++++|.+++..+  +..+++|+.|+|++|.+++.  ..+..+++|+.|++++|++.+...
T Consensus       158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            8888887777544  67777888888888877764  357777888888888887766433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=2.9e-18  Score=165.97  Aligned_cols=194  Identities=17%  Similarity=0.213  Sum_probs=129.7

Q ss_pred             CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCC
Q 016686           23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS  102 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n  102 (384)
                      +++.|++++|.++++|..++  ++|++|++++|.++.++ .    .+++|++|++++|.++.++.+..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E----LPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence            67777887777777776554  67788888887777665 1    45777888888887777654333  7788888888


Q ss_pred             CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcch
Q 016686          103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI  182 (384)
Q Consensus       103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  182 (384)
                      .+++ +|.   .+ ++|+.|++++|.+++. +.    .+++|++|++++|.+++. |. +.  ++|+.|++++|.++...
T Consensus       131 ~l~~-lp~---~l-~~L~~L~Ls~N~l~~l-p~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          131 QLTM-LPE---LP-ALLEYINADNNQLTML-PE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CCSC-CCC---CC-TTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSSCC
T ss_pred             cCCC-CCC---cC-ccccEEeCCCCccCcC-CC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCchh
Confidence            7775 333   34 7788888888877652 21    356788888888877753 33 43  67888888888777442


Q ss_pred             hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCC
Q 016686          183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL  249 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  249 (384)
                      . . ..       .-....+.|+.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..+
T Consensus       197 ~-~-~~-------~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          197 A-V-PV-------RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C-C-C---------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             h-H-HH-------hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            2 1 00       001112334888888888886 45666678888888888888888777776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=5.2e-19  Score=163.12  Aligned_cols=185  Identities=19%  Similarity=0.225  Sum_probs=135.4

Q ss_pred             cEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686           95 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  174 (384)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  174 (384)
                      +.++++++.++. +|..+   ...++.|++++|.+++..+..+...+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~~-iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            455666665552 33221   14566677777776654443332257788888888888877666677788888888888


Q ss_pred             CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhc---cCCCC
Q 016686          175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSK  251 (384)
Q Consensus       175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l---~~~~~  251 (384)
                      +|.+....+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+   ..+++
T Consensus        97 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           97 SNHLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             SSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             CCcCCcCCHH------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            8888777665            57788889999999998888777788888899999999998888665555   56889


Q ss_pred             CCEEEccCCccCccccccccCCCC--CCEEEccCCcCCCHHHHHHH
Q 016686          252 LTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTEDAILQF  295 (384)
Q Consensus       252 L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~  295 (384)
                      |+.|++++|+++...+..+..++.  ++.|++++|++.+++....+
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~  210 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL  210 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence            999999999998876666666665  48899999999887765543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.7e-18  Score=147.01  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=66.0

Q ss_pred             CCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686          140 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  219 (384)
Q Consensus       140 ~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  219 (384)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.            .+..+++|+.|++++|.+++..+
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG------------VFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh------------HhccCCcCCEEECCCCccceeCH
Confidence            345555555555555444333445556666666666666554444            35556666666666666665554


Q ss_pred             cccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC
Q 016686          220 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  273 (384)
Q Consensus       220 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  273 (384)
                      ..+..+++|++|++++|.+.       +.+++|+.|+++.|.+++..|..++.+
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             HHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence            44556666666666666443       234566666666666666666555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=5.3e-18  Score=145.13  Aligned_cols=161  Identities=18%  Similarity=0.214  Sum_probs=133.3

Q ss_pred             ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhh
Q 016686          119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  198 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  198 (384)
                      -+.++++++.++.. |..   -.+++++|++++|.+++..+..|..+++|+.|++++|.+.+..+.            .+
T Consensus        13 ~~~v~c~~~~l~~i-P~~---l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------~~   76 (220)
T 2v9t_B           13 NNIVDCRGKGLTEI-PTN---LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------AF   76 (220)
T ss_dssp             TTEEECTTSCCSSC-CSS---CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT------------TT
T ss_pred             CCEEEcCCCCcCcC-CCc---cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH------------Hh
Confidence            35677777776643 221   135788888988888877666788889999999999999887777            68


Q ss_pred             cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCE
Q 016686          199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL  278 (384)
Q Consensus       199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  278 (384)
                      ..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            88999999999999999877667788999999999999999988888999999999999999999988778888999999


Q ss_pred             EEccCCcCCCHHHHHHH
Q 016686          279 LDLHGGWLLTEDAILQF  295 (384)
Q Consensus       279 L~l~~n~~~~~~~~~~~  295 (384)
                      |++++|++.+++.+..+
T Consensus       157 L~L~~N~~~c~c~l~~l  173 (220)
T 2v9t_B          157 MHLAQNPFICDCHLKWL  173 (220)
T ss_dssp             EECCSSCEECSGGGHHH
T ss_pred             EEeCCCCcCCCCccHHH
Confidence            99999999776655444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=4.3e-18  Score=164.84  Aligned_cols=186  Identities=19%  Similarity=0.213  Sum_probs=154.1

Q ss_pred             CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686            3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS   80 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n   80 (384)
                      .+|+.|++++|.++++|.  .++|++|++++|.|+.+|   ..+++|++|++++|.+++++. +  ..  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l--~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L--PA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C--CT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h--hc--CCCEEECCCC
Confidence            379999999999998873  578999999999999988   457999999999999999776 3  23  9999999999


Q ss_pred             CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686           81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  160 (384)
Q Consensus        81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  160 (384)
                      .++.++.  .+++|+.|++++|.+++ +|.   .+ ++|+.|++++|.+++. +. + .  ++|+.|++++|.++.. |.
T Consensus       131 ~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l-~~L~~L~Ls~N~L~~l-p~-l-~--~~L~~L~Ls~N~L~~l-p~  197 (571)
T 3cvr_A          131 QLTMLPE--LPALLEYINADNNQLTM-LPE---LP-TSLEVLSVRNNQLTFL-PE-L-P--ESLEALDVSTNLLESL-PA  197 (571)
T ss_dssp             CCSCCCC--CCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSCC-CC-C-C--TTCCEEECCSSCCSSC-CC
T ss_pred             cCCCCCC--cCccccEEeCCCCccCc-CCC---cC-CCcCEEECCCCCCCCc-ch-h-h--CCCCEEECcCCCCCch-hh
Confidence            9998866  78999999999999986 443   44 8999999999999873 33 3 3  8999999999999843 33


Q ss_pred             hhhCCCCc-------cEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccC
Q 016686          161 YMSMMPSL-------KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF  225 (384)
Q Consensus       161 ~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  225 (384)
                       +..  +|       +.|++++|.++.. |.            .+..+++|+.|++++|.+++..|..+..+
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~------------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRITHI-PE------------NILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -CC----------CCEEEECCSSCCCCC-CG------------GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCcceec-CH------------HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             433  67       9999999999865 44            35569999999999999999888777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=6.4e-18  Score=144.60  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=126.4

Q ss_pred             ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH-HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686          119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  197 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  197 (384)
                      -+.+++++|.++.. |..   -.+.+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+.            .
T Consensus        13 ~~~l~~s~n~l~~i-P~~---~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------~   76 (220)
T 2v70_A           13 GTTVDCSNQKLNKI-PEH---IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG------------A   76 (220)
T ss_dssp             TTEEECCSSCCSSC-CSC---CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT------------T
T ss_pred             CCEeEeCCCCcccC-ccC---CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH------------H
Confidence            45677777776642 221   13456788888887775533 3467788888888888888877666            5


Q ss_pred             hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCC
Q 016686          198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK  277 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  277 (384)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            78888899999999998888777788889999999999999888888888899999999999999988788888889999


Q ss_pred             EEEccCCcCCCHHHHHHH
Q 016686          278 LLDLHGGWLLTEDAILQF  295 (384)
Q Consensus       278 ~L~l~~n~~~~~~~~~~~  295 (384)
                      .|++++|++.+.+.+..+
T Consensus       157 ~L~L~~N~l~c~c~l~~l  174 (220)
T 2v70_A          157 TLNLLANPFNCNCYLAWL  174 (220)
T ss_dssp             EEECCSCCEECSGGGHHH
T ss_pred             EEEecCcCCcCCCchHHH
Confidence            999999998766554433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.7e-17  Score=139.53  Aligned_cols=151  Identities=17%  Similarity=0.280  Sum_probs=78.0

Q ss_pred             CCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEE
Q 016686           44 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN  123 (384)
Q Consensus        44 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  123 (384)
                      +++|++|++++|.++.++ .  +..+++|++|++++|.+...+.+..+++|++|++++|.+++..+..+..+ ++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~l~-~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-G--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-T--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-TTCCEEE
T ss_pred             cCCccEEeccCCCccChH-H--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCC-CCCCEEE
Confidence            345555555555555444 1  23455555555555555444555555555555555555554444445555 5555555


Q ss_pred             ccCCCCCchHHHHHHhCCCCCCEEeccCCC-CChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC
Q 016686          124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN  202 (384)
Q Consensus       124 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  202 (384)
                      +++|.+++..+..+ +.+++|++|++++|. +++. + .+..+++|+.|++++|.+.+..              .+..++
T Consensus       119 Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--------------~l~~l~  181 (197)
T 4ezg_A          119 ISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--------------GIEDFP  181 (197)
T ss_dssp             CCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--------------TGGGCS
T ss_pred             ecCCccCcHhHHHH-hhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--------------HhccCC
Confidence            55555554444433 345555555555555 4433 1 3555556666666666555432              244555


Q ss_pred             CCCEEEccCCCCC
Q 016686          203 HLERLNLEQTQVS  215 (384)
Q Consensus       203 ~L~~L~l~~n~l~  215 (384)
                      +|+.|++++|++.
T Consensus       182 ~L~~L~l~~N~i~  194 (197)
T 4ezg_A          182 KLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEEECBC---
T ss_pred             CCCEEEeeCcccC
Confidence            6666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.7e-18  Score=152.37  Aligned_cols=163  Identities=22%  Similarity=0.312  Sum_probs=92.0

Q ss_pred             CcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            5 LSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         5 L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      +..++++++.+++++   .+++|++|++++|.++.++ .+..+++|++|++++|.++++++   +..+++|++|++++|.
T Consensus        21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC
T ss_pred             HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc
Confidence            344455556555433   4556666666666666655 44566666666666666666554   3366666666666666


Q ss_pred             CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHh
Q 016686           82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  161 (384)
Q Consensus        82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  161 (384)
                      +..++.+.. ++|++|++++|.+++.  ..+..+ ++|+.|++++|++++..  . ++.+++|++|++++|.+++.  ..
T Consensus        97 l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l-~~L~~L~Ls~N~i~~~~--~-l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A           97 LKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHL-KNLEILSIRNNKLKSIV--M-LGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             CSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTC-TTCCEEECTTSCCCBCG--G-GGGCTTCCEEECTTSCCCBC--TT
T ss_pred             cCCcCcccc-CcccEEEccCCccCCC--hhhcCc-ccccEEECCCCcCCCCh--H-HccCCCCCEEECCCCcCcch--HH
Confidence            666544444 6666666666666542  234444 56666666666655432  1 23455555555555555544  34


Q ss_pred             hhCCCCccEEEeeCCcCCc
Q 016686          162 MSMMPSLKFIDISNTDIKG  180 (384)
Q Consensus       162 l~~~~~L~~L~l~~n~l~~  180 (384)
                      +..+++|+.|++++|.+..
T Consensus       168 l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             STTCCCCCEEEEEEEEEEC
T ss_pred             hccCCCCCEEeCCCCcccC
Confidence            4455555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=4.4e-18  Score=145.61  Aligned_cols=155  Identities=17%  Similarity=0.231  Sum_probs=117.1

Q ss_pred             cEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686           95 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  174 (384)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  174 (384)
                      +.+++++|.++. +|..+   ...++.|++++|.+++..+...++.+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~l~~s~n~l~~-iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCccc-CccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            356666665553 33222   14566777777776654333333567788888888888877666678888888888888


Q ss_pred             CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686          175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  254 (384)
Q Consensus       175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~  254 (384)
                      +|.+++..+.            .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++
T Consensus        90 ~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           90 SNRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             SSCCCCCCGG------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCccCccCHh------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            8888877766            6788888999999999988887888888889999999999998887888888999999


Q ss_pred             EEccCCccCcc
Q 016686          255 LSIRDAVLTNS  265 (384)
Q Consensus       255 L~l~~n~l~~~  265 (384)
                      |++++|++...
T Consensus       158 L~L~~N~l~c~  168 (220)
T 2v70_A          158 LNLLANPFNCN  168 (220)
T ss_dssp             EECCSCCEECS
T ss_pred             EEecCcCCcCC
Confidence            99999988753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.4e-17  Score=140.10  Aligned_cols=152  Identities=18%  Similarity=0.323  Sum_probs=77.7

Q ss_pred             CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686           68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  147 (384)
                      .+++|++|++++|.+..++.+..+++|++|++++|.+...  ..+..+ ++|+.|++++|.++                 
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l-~~L~~L~l~~n~l~-----------------  101 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--NPISGL-SNLERLRIMGKDVT-----------------  101 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--GGGTTC-TTCCEEEEECTTCB-----------------
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--hhhhcC-CCCCEEEeECCccC-----------------
Confidence            4456666666666666555566666666666666654421  233344 45555555555444                 


Q ss_pred             eccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCC-CCcccccccccCC
Q 016686          148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFK  226 (384)
Q Consensus       148 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~  226 (384)
                              +..+..+..+++|++|++++|.+++..+.            .+..+++|++|++++|. +++. + .+..++
T Consensus       102 --------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~  159 (197)
T 4ezg_A          102 --------SDKIPNLSGLTSLTLLDISHSAHDDSILT------------KINTLPKVNSIDLSYNGAITDI-M-PLKTLP  159 (197)
T ss_dssp             --------GGGSCCCTTCTTCCEEECCSSBCBGGGHH------------HHTTCSSCCEEECCSCTBCCCC-G-GGGGCS
T ss_pred             --------cccChhhcCCCCCCEEEecCCccCcHhHH------------HHhhCCCCCEEEccCCCCcccc-H-hhcCCC
Confidence                    43334444445555555555555443333            34455555555555554 4332 2 345555


Q ss_pred             CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccC
Q 016686          227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  263 (384)
Q Consensus       227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  263 (384)
                      +|++|++++|.+++..  .+..+++|++|++++|++.
T Consensus       160 ~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          160 ELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            5555555555555422  4455566666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=9.5e-18  Score=154.64  Aligned_cols=172  Identities=20%  Similarity=0.287  Sum_probs=134.5

Q ss_pred             cEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCc--CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            6 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         6 ~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      +.+++++++++.+|.  .+.+++|++++|.|++++...+  .+++|++|++++|.++.+++. .|.++++|++|++++|.
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCc
Confidence            578888888888872  3468889999999888776654  788999999999998887754 36688899999999998


Q ss_pred             CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHH--hCCCCCCEEeccCCCCChH
Q 016686           82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA--GHLPNLEILSLSGTQIDDY  157 (384)
Q Consensus        82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~i~~~  157 (384)
                      +..+  ..+..+++|++|++++|.+....+..+..+ ++|+.|++++|.++......+.  +.+++|+.|++++|.++..
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc-ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            8877  357888889999999998887777778888 8899999999888764433221  3578888899988888876


Q ss_pred             HHHhhhCCCC--ccEEEeeCCcCC
Q 016686          158 AISYMSMMPS--LKFIDISNTDIK  179 (384)
Q Consensus       158 ~~~~l~~~~~--L~~L~l~~n~l~  179 (384)
                      .+..+..++.  ++.|++++|.+.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            6677777776  477888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=2.2e-17  Score=150.20  Aligned_cols=217  Identities=17%  Similarity=0.163  Sum_probs=146.1

Q ss_pred             CCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEeeCCC----CCchhHHHHHhccC
Q 016686           44 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM----IGDDSVEMVACVGA  117 (384)
Q Consensus        44 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~~~~  117 (384)
                      +++|++|++.+ .++.+... +|..|++|+.+++..|.+..+  ..|..+.++..+....+.    .......++..+ .
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~-aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~-~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDA-AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG-E  176 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTT-TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES-C
T ss_pred             cCCCcEEECCc-cccchhHH-HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc-c
Confidence            77777777777 66666554 466777777777777776655  355555555555443311    110011112233 3


Q ss_pred             Ccc-EEEccCCCCCchHHHHHHh---CCCCCCEEeccCCCCChHHHHhhh-CCCCccEEEeeCCcCCcchhhcccchhhh
Q 016686          118 NLR-NLNLSNTRFSSAGVGILAG---HLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLV  192 (384)
Q Consensus       118 ~L~-~L~L~~n~l~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  192 (384)
                      .|+ .+.+....   ..+..+..   ...+++.+.+.++ +.......+. .+++|+.+++++|.+......        
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~--------  244 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDF--------  244 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTT--------
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHh--------
Confidence            444 34443322   12222222   2456777777654 3333333333 478999999999888876666        


Q ss_pred             hhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCc-EEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcccccccc
Q 016686          193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK  271 (384)
Q Consensus       193 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  271 (384)
                          +|..+.+|+.+++.+| ++.+...+|.+|++|+ .+.+.+ .++...+.+|.++++|+.+++++|.++......|.
T Consensus       245 ----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          245 ----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             ----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             ----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence                7889999999999988 8877778889999999 999988 78888888999999999999999999988888999


Q ss_pred             CCCCCCEEEc
Q 016686          272 PPRSLKLLDL  281 (384)
Q Consensus       272 ~~~~L~~L~l  281 (384)
                      .+++|+.+..
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence            9999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=9.9e-17  Score=138.11  Aligned_cols=157  Identities=20%  Similarity=0.216  Sum_probs=127.8

Q ss_pred             CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686          117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  196 (384)
Q Consensus       117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  196 (384)
                      +..+.++++++.++.. |.   +-.++|++|++++|.+++..+..+..+++|++|++++|.+....+.            
T Consensus        19 Cs~~~v~c~~~~l~~i-p~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------   82 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASV-PA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------   82 (229)
T ss_dssp             EETTEEECTTSCCSSC-CS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred             EeCCEeEccCCCcCcc-CC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh------------
Confidence            3566777777776633 22   2247888999988888877777788888999999999998776655            


Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  276 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  276 (384)
                      .+..+++|+.|++++|.+++..+..+..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+..+++|
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            57888999999999999988777778889999999999999985 56777889999999999999998777778888999


Q ss_pred             CEEEccCCcCCCHH
Q 016686          277 KLLDLHGGWLLTED  290 (384)
Q Consensus       277 ~~L~l~~n~~~~~~  290 (384)
                      +.|++++|++.+.+
T Consensus       162 ~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          162 THAYLFGNPWDCEC  175 (229)
T ss_dssp             CEEECTTSCBCTTB
T ss_pred             CEEEeeCCCccCCc
Confidence            99999999986543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1e-17  Score=147.44  Aligned_cols=82  Identities=20%  Similarity=0.315  Sum_probs=48.4

Q ss_pred             CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHh
Q 016686          166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ  245 (384)
Q Consensus       166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~  245 (384)
                      ++|+.|++++|.+++. +             .+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++.  ..
T Consensus       106 ~~L~~L~L~~N~l~~~-~-------------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~  167 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDT-D-------------SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GG  167 (263)
T ss_dssp             SSCCEEECCSSCCSBS-G-------------GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TT
T ss_pred             CcccEEEccCCccCCC-h-------------hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HH
Confidence            4555555555555543 1             245556666666666666653  2455666666666666666654  45


Q ss_pred             ccCCCCCCEEEccCCccCcc
Q 016686          246 LSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       246 l~~~~~L~~L~l~~n~l~~~  265 (384)
                      +..+++|+.|++++|+++..
T Consensus       168 l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             STTCCCCCEEEEEEEEEECC
T ss_pred             hccCCCCCEEeCCCCcccCC
Confidence            56666666666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=2.3e-17  Score=141.16  Aligned_cols=153  Identities=15%  Similarity=0.203  Sum_probs=113.4

Q ss_pred             cEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686           95 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  174 (384)
Q Consensus        95 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  174 (384)
                      +.++.+++.++. +|..+   .++++.|++++|.+++..+..+ +.+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~v~c~~~~l~~-iP~~l---~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNL---PETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSS-CCSSC---CTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCc-CCCcc---CcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            345555555542 22211   1466677777776665444333 457778888888888777667778888888888888


Q ss_pred             CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686          175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  254 (384)
Q Consensus       175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~  254 (384)
                      +|.++...+.            .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        89 ~N~l~~l~~~------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           89 GNKITELPKS------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             SSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCcCCccCHh------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            8888876655            5778888999999999888887788888888999999999888877777888889999


Q ss_pred             EEccCCccCc
Q 016686          255 LSIRDAVLTN  264 (384)
Q Consensus       255 L~l~~n~l~~  264 (384)
                      |++++|++..
T Consensus       157 L~L~~N~~~c  166 (220)
T 2v9t_B          157 MHLAQNPFIC  166 (220)
T ss_dssp             EECCSSCEEC
T ss_pred             EEeCCCCcCC
Confidence            9999988754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=1.9e-16  Score=136.26  Aligned_cols=135  Identities=19%  Similarity=0.291  Sum_probs=95.4

Q ss_pred             CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686          117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  196 (384)
Q Consensus       117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  196 (384)
                      ++|+.|++++|.+++..+..+ +.+++|++|++++|.++...+..|..+++|+.|++++|.+++..+.            
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~------------  106 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA------------  106 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred             CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh------------
Confidence            456666666666655444333 4566677777777766655445566777777777777777766555            


Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      .+..+++|+.|++++|.++. +|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       107 ~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             HhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            56777888888888888775 466677788888888888888876666777888888888888887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=4.6e-19  Score=172.33  Aligned_cols=207  Identities=14%  Similarity=0.145  Sum_probs=137.6

Q ss_pred             CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC-CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccE
Q 016686           43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN  121 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  121 (384)
                      .+++|+.|++++|.++.+|..+.  ++++|++|++++|.. ...+.+          +..+...+..|..+..+ ++|+.
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~--~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l-~~L~~  413 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELE--SCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYF-STLKA  413 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHH--HHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHH-HHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHH--HHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHH-Hhccc
Confidence            45566666666666655555432  555666666543321 000000          00112233445555555 55655


Q ss_pred             EE-ccCCCCCch--------HHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhh
Q 016686          122 LN-LSNTRFSSA--------GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV  192 (384)
Q Consensus       122 L~-L~~n~l~~~--------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  192 (384)
                      |+ ++.|.+...        ....+  ....|+.|++++|.+++. |. +..+++|+.|++++|.++. +|.        
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~-lp~--------  480 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA-LPP--------  480 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC-CCG--------
T ss_pred             Ccchhhcccchhhhhhhhccccccc--CccCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc-cch--------
Confidence            55 343332111        11111  123689999999998864 43 8889999999999999984 455        


Q ss_pred             hhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhh-HHhccCCCCCCEEEccCCccCccccc---
Q 016686          193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLG---  268 (384)
Q Consensus       193 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---  268 (384)
                          .+..+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|++++..+.   
T Consensus       481 ----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          481 ----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             ----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             ----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence                58889999999999999998 45 7889999999999999999876 88999999999999999999886443   


Q ss_pred             cccCCCCCCEEEc
Q 016686          269 SFKPPRSLKLLDL  281 (384)
Q Consensus       269 ~~~~~~~L~~L~l  281 (384)
                      .+..+++|+.|++
T Consensus       555 l~~~lp~L~~L~l  567 (567)
T 1dce_A          555 LAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHCTTCSEEEC
T ss_pred             HHHHCcccCccCC
Confidence            2233688988864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=9.7e-18  Score=162.98  Aligned_cols=196  Identities=17%  Similarity=0.211  Sum_probs=150.6

Q ss_pred             ccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-------------CCchHHHHHHhCCCCCCEEe-ccCCC
Q 016686           88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-------------FSSAGVGILAGHLPNLEILS-LSGTQ  153 (384)
Q Consensus        88 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~~~~~~~~~l~~L~~L~-l~~n~  153 (384)
                      +..+++|+.|++++|.++ .+|..+..+ ++|+.|++++|.             ..+..+..+ +.+++|+.|+ ++.|.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l-~~l~~L~~L~~l~~n~  421 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAAY  421 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH-HHHHHHHHHCGGGHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHH-HHHHhcccCcchhhcc
Confidence            356788899999999887 678888888 889998886653             344444443 5678888888 55554


Q ss_pred             CChHHHH-----hhh--CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCC
Q 016686          154 IDDYAIS-----YMS--MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  226 (384)
Q Consensus       154 i~~~~~~-----~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  226 (384)
                      +.+....     .+.  ....|+.|++++|.+++. |.             +..+++|+.|++++|.++. +|..++.++
T Consensus       422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-------------~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~  486 (567)
T 1dce_A          422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-------------LEQLLLVTHLDLSHNRLRA-LPPALAALR  486 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-------------GGGGTTCCEEECCSSCCCC-CCGGGGGCT
T ss_pred             cchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-------------ccccccCcEeecCcccccc-cchhhhcCC
Confidence            3321110     111  123699999999999874 33             6788999999999999995 678899999


Q ss_pred             CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc-cccccCCCCCCEEEccCCcCCCHH-HHHHHHHhCCCce
Q 016686          227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLTED-AILQFCKMHPRIE  303 (384)
Q Consensus       227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~~l~  303 (384)
                      +|++|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|++...+ ....+...+|+++
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            99999999999998 45 8999999999999999999976 889999999999999999984322 1233455567665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=2e-15  Score=126.20  Aligned_cols=135  Identities=16%  Similarity=0.204  Sum_probs=106.4

Q ss_pred             CEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccccc
Q 016686          145 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  224 (384)
Q Consensus       145 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  224 (384)
                      +.+++++++++. .|..+  ...+++|++++|.+.+..+..           .+..+++|++|++++|.+++..+..+..
T Consensus        11 ~~l~~s~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   76 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDG-----------LFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSC-----------SGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CEEEcCCCCcCc-CccCC--CCCCCEEECCCCcCCccCCcc-----------ccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence            567777777653 23222  237888888888887765531           3677888999999999888887888888


Q ss_pred             CCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHH
Q 016686          225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL  293 (384)
Q Consensus       225 ~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  293 (384)
                      +++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.....
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence            889999999999998887777888899999999999999888888888899999999999886654433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.3e-15  Score=121.81  Aligned_cols=128  Identities=23%  Similarity=0.319  Sum_probs=86.6

Q ss_pred             CCCCCEEeccCCCCC-hHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686          141 LPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  219 (384)
Q Consensus       141 l~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  219 (384)
                      .+++++|++++|.++ +..+..+..+++|+.|++++|.+.+.  .            .+..+++|++|++++|.+++..|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------NLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------TCCCCTTCCEEECCSSCCCSCTH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------hhhcCCCCCEEECCCCcccchHH
Confidence            356777777777665 34445556667777777777776655  2            46667777777777777776555


Q ss_pred             cccccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCcccc---ccccCCCCCCEEEcc
Q 016686          220 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLH  282 (384)
Q Consensus       220 ~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~  282 (384)
                      ..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5566677777777777777764 34667777777777777777776544   356666777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=7.7e-16  Score=154.13  Aligned_cols=190  Identities=16%  Similarity=0.125  Sum_probs=115.3

Q ss_pred             HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686          157 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA  236 (384)
Q Consensus       157 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  236 (384)
                      ..+..+..++.|+.|++++|.+....+.             +..+++|++|++++|.++ .+|..++.+++|++|+|++|
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISAN-------------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGG-------------GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChh-------------hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence            4456778889999999999998854433             457899999999999999 46788899999999999999


Q ss_pred             CCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686          237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ  316 (384)
Q Consensus       237 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  316 (384)
                      .|+. +|..++.+++|++|+|++|.++. .|..|..+++|+.|+|++|.+.. ..+..+........       .+.+.+
T Consensus       281 ~l~~-lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~-------~l~l~~  350 (727)
T 4b8c_D          281 RLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGL-------IFYLRD  350 (727)
T ss_dssp             CCSS-CCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHH-------HHHHHH
T ss_pred             cCCc-cChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCC-CChHHHhhcchhhh-------HHhhcc
Confidence            9994 68889999999999999999985 57779999999999999999843 33333322111001       245678


Q ss_pred             cccCCCCCCchhhhhhhhh----hcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686          317 IGSNGPSPSRTSLRASLVK----QKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP  372 (384)
Q Consensus       317 n~~~~~~p~~~~~~~~l~n----~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  372 (384)
                      |.+++.+|..+..+.-..|    ...|.++.....  ....+.+++...+++|.+.+...
T Consensus       351 N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~--~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          351 NRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEH--LATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             CCCCCCCCCC-------------------------------------------CCCGGGC
T ss_pred             CcccCcCccccceeEeecccccccccCCccccccc--hhhcccccceeeeeccccccccC
Confidence            8999999998877653322    222333433200  01456677888899999876554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.5e-15  Score=124.03  Aligned_cols=132  Identities=22%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             CCCCCEEeccCCCCC-hHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686          141 LPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  219 (384)
Q Consensus       141 l~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  219 (384)
                      .++|++|++++|.++ +..+..+..+++|+.|++++|.+.+.  .            .+..+++|++|++++|.+++..+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------NLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------SCCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------hhccCCCCCEEECcCCcCchHHH
Confidence            356777777777665 34444556667777777777776654  2            46667777777777777776555


Q ss_pred             cccccCCCCcEEEcCCCCCChhh-HHhccCCCCCCEEEccCCccCcccc---ccccCCCCCCEEEccCCcC
Q 016686          220 FPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       220 ~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~~  286 (384)
                      ..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus        89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            55556777777777777776642 2566677777777777777776544   3566667777777777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.59  E-value=2.8e-15  Score=138.18  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=95.5

Q ss_pred             CCccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhh----
Q 016686           92 KALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS----  163 (384)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----  163 (384)
                      +.|+.|++++|.++......+..++    ++|+.|++++|.++......+...+++|++|++++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3455555555555544333333221    35556666666555444444433445566666666666544443332    


Q ss_pred             -CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc----ccccccCCCCcEEEcCCCCC
Q 016686          164 -MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASL  238 (384)
Q Consensus       164 -~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~L~~n~i  238 (384)
                       ..+.|++|++++|.+++.....        -...+..+++|++|++++|.+++..    +..+..+++|++|++++|.|
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~--------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAV--------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHH--------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             hcCCccceeeCCCCCCChHHHHH--------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence             3455666666666654322110        0013345566666666666665532    33444556677777777777


Q ss_pred             ChhhH----HhccCCCCCCEEEccCCccCccccccccCC---C--CCCEEE--ccCCcC
Q 016686          239 TDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWL  286 (384)
Q Consensus       239 ~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~--~L~~L~--l~~n~~  286 (384)
                      ++...    ..+..+++|++|++++|.+++.+...+...   .  .++.+.  +..+.+
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            65433    233455677777777777776655544332   1  156666  555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.1e-15  Score=122.22  Aligned_cols=136  Identities=21%  Similarity=0.224  Sum_probs=97.1

Q ss_pred             CCCCccEEeccCCCCC--chhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc
Q 016686           43 NKAPLAKISLAGTTFI--NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR  120 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  120 (384)
                      ..++|++|++++|.++  .++..  +..+++|++|++++|.+..+..+..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHC-TTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhC-CCCC
Confidence            5577888888888887  55543  45778888888888888777777888888888888888886666666667 8888


Q ss_pred             EEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH---HhhhCCCCccEEEeeCCcCCcc
Q 016686          121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI---SYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      .|++++|.+++......++.+++|++|++++|.+++..+   ..+..+++|++|++++|.+...
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            888888887764321223567777777777777664433   3566667777777776665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.8e-15  Score=118.53  Aligned_cols=129  Identities=20%  Similarity=0.262  Sum_probs=86.8

Q ss_pred             CCCCccEEeccCCCCC--chhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc
Q 016686           43 NKAPLAKISLAGTTFI--NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR  120 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  120 (384)
                      ..++|++|++++|.++  .++..  +..+++|++|++++|.+.....+..+++|++|++++|.+++..|..+..+ ++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKC-PNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHC-TTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhC-CCCC
Confidence            4466777777777776  44432  34677777777777777766667777778888888887776566666666 7777


Q ss_pred             EEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH---HhhhCCCCccEEEee
Q 016686          121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI---SYMSMMPSLKFIDIS  174 (384)
Q Consensus       121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~  174 (384)
                      .|++++|.+++......++.+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888877777764322223567777777777777665433   456666667666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=2.8e-14  Score=132.80  Aligned_cols=238  Identities=10%  Similarity=0.160  Sum_probs=145.2

Q ss_pred             CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee
Q 016686           23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS  100 (384)
Q Consensus        23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~  100 (384)
                      +|+.+.+..+ ++.++...|.-.+|+++.+.. .++.+... .|.+|++|+.+++..|.+..+  ..|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            5777776654 555655555334577777764 45555443 366777777777777666665  2333 5667777776


Q ss_pred             CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC-
Q 016686          101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK-  179 (384)
Q Consensus       101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~-  179 (384)
                      . .+......++..+ ++|+.+.+..+ ++.....+|. . .+|+.+.+. +.++.....+|..+++|+.+.+.++.+. 
T Consensus       212 ~-~l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~-~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          212 V-TLKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQEAFR-E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             T-TCCEECTTTTTTC-TTCCCEECCTT-CCEECTTTTT-T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             C-chheehhhHhhCC-CCCCEEecCCC-ccCccccccc-c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence            3 3554555566666 67777777653 3333333332 2 567777773 4455455566677777777777766543 


Q ss_pred             ----cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEE
Q 016686          180 ----GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL  255 (384)
Q Consensus       180 ----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L  255 (384)
                          .....            +|..+++|+.+.+.. .++.+...+|.+|++|+.+.+..+ ++.....+|.++ +|+.+
T Consensus       286 ~~~~~I~~~------------aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l  350 (401)
T 4fdw_A          286 DPEAMIHPY------------CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV  350 (401)
T ss_dssp             CTTCEECTT------------TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred             CcccEECHH------------HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence                22223            566777777777773 366666666777777777777543 666556667777 77777


Q ss_pred             EccCCccCccccccccCC-CCCCEEEccCCc
Q 016686          256 SIRDAVLTNSGLGSFKPP-RSLKLLDLHGGW  285 (384)
Q Consensus       256 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~  285 (384)
                      .+.+|.+.......|..+ ..++.+.+..+.
T Consensus       351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            777776666555556655 366677666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=9e-15  Score=132.95  Aligned_cols=236  Identities=16%  Similarity=0.169  Sum_probs=183.5

Q ss_pred             CCCCcEEEccCCCCC--------------------C-----CCC--------CCCCcEEEccCCCchhHHhhCc-CCCCc
Q 016686            2 FPRLSFLNLAWTGVT--------------------K-----LPN--------ISSLECLNLSNCTIDSILEGNE-NKAPL   47 (384)
Q Consensus         2 l~~L~~L~l~~n~i~--------------------~-----l~~--------~~~L~~L~ls~n~i~~~~~~~~-~~~~L   47 (384)
                      +++|++|||++|.+.                    .     +.+        |++|+.|++.. .++.++...| .|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678999999999888                    1     225        89999999999 8988888776 89999


Q ss_pred             cEEeccCCCCCchhHHhhhcCCCCccEEEeecCC----CCCc--ccccCCCCcc-EEEeeCCCCCchhHHHHHhc---cC
Q 016686           48 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSS----LSRF--CFLTQMKALE-HLDLSSSMIGDDSVEMVACV---GA  117 (384)
Q Consensus        48 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~----l~~~--~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~---~~  117 (384)
                      ++|++++|.++.+++. .|..+.++..+......    ...+  ..+..+..|+ .+.+....   ..+..+...   ..
T Consensus       127 ~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~  202 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPR  202 (329)
T ss_dssp             CEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGG
T ss_pred             ceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCcc
Confidence            9999999999888765 57788877777765521    1222  3455677777 55665432   233333221   15


Q ss_pred             CccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686          118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  197 (384)
Q Consensus       118 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  197 (384)
                      ++..+.+.++ +.......+...+++|+.+++++|.++.....+|..+++|+.+++..| +....+.            +
T Consensus       203 ~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~------------a  268 (329)
T 3sb4_A          203 DINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR------------V  268 (329)
T ss_dssp             GCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT------------T
T ss_pred             ccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH------------H
Confidence            6778877765 443444455456899999999999998887788999999999999987 6665555            7


Q ss_pred             hcCCCCCC-EEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686          198 LQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  257 (384)
Q Consensus       198 ~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l  257 (384)
                      |..+.+|+ .+++.+ .++.+.+.+|.+|++|+.+++.+|.++.....+|.++++|+.+..
T Consensus       269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999 999998 788888889999999999999999999998899999999999863

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=3.5e-16  Score=156.59  Aligned_cols=173  Identities=13%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             CCcEEEccCCCCCCCCCCCCCcEEEccCCC----------chhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCcc
Q 016686            4 RLSFLNLAWTGVTKLPNISSLECLNLSNCT----------IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS   73 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~~~~L~~L~ls~n~----------i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~   73 (384)
                      .++.|++.+|.+...+ ...++.++|+.+.          +...+..+..++.|+.|+|++|.+..++..+.  ++++|+
T Consensus       174 ~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~l~~L~  250 (727)
T 4b8c_D          174 LTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF--KYDFLT  250 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG--GCCSCS
T ss_pred             ccceEEeeCCCCCcch-hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc--CCCCCC
Confidence            3556666666655432 1122333333333          33233344467777777777777776665432  667777


Q ss_pred             EEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           74 FLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        74 ~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      +|+|++|.|+.+ ..+..+++|++|+|++|.++ .+|..+..+ ++|+.|+|++|.++. .+.. ++.+++|++|+|++|
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC-FQLKYFYFFDNMVTT-LPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG-TTCSEEECCSSCCCC-CCSS-TTSCTTCCCEECTTS
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC-CCCCEEECCCCCCCc-cChh-hhcCCCccEEeCCCC
Confidence            777777777655 35667777777777777776 456666666 777777777777653 3333 356777777777777


Q ss_pred             CCChHHHHhhhCCCC-ccEEEeeCCcCCcchh
Q 016686          153 QIDDYAISYMSMMPS-LKFIDISNTDIKGFIQ  183 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~  183 (384)
                      .+++..|..+..... ...+++++|.+++.+|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            777666655543211 1234566666655443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=121.26  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=107.2

Q ss_pred             CEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccccc
Q 016686          145 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  224 (384)
Q Consensus       145 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  224 (384)
                      +.++++++.++.. |..+  .+++++|++++|.++... .            .+..+++|+.|++++|.+++..+..+..
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~ip-~------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~   76 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTLVP-K------------ELSNYKHLTLIDLSNNRISTLSNQSFSN   76 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCSCC-G------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCchhH-H------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence            5667777776632 2222  357888888888887543 4            5778888999999999888877778888


Q ss_pred             CCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686          225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  296 (384)
Q Consensus       225 ~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  296 (384)
                      +++|++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++.+++.+..+.
T Consensus        77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~  148 (193)
T 2wfh_A           77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS  148 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence            899999999999998888888889999999999999998877777888899999999999987766544433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=2.3e-14  Score=119.71  Aligned_cols=131  Identities=13%  Similarity=0.220  Sum_probs=99.6

Q ss_pred             ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH-hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686          119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  197 (384)
Q Consensus       119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  197 (384)
                      -+.++++++.++. .|..+   ..++++|++++|.+++..+. .+..+++|++|++++|.+++..+.            .
T Consensus        10 ~~~l~~s~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~   73 (192)
T 1w8a_A           10 GTTVDCTGRGLKE-IPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------A   73 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------T
T ss_pred             CCEEEcCCCCcCc-CccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh------------H
Confidence            3567777777653 22211   23778888888877755443 367788888888888888877666            6


Q ss_pred             hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686          198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++...
T Consensus        74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            77888888888888888887777788888888888888888888788888888888888888888754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=2.3e-14  Score=119.79  Aligned_cols=125  Identities=20%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEeeCC
Q 016686           25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS  102 (384)
Q Consensus        25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n  102 (384)
                      +.++++++.++.+|..++  ++|++|++++|.++.++..  |.++++|++|++++|.++.+  ..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~--~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKE--LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGG--GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHH--hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            455666666665555443  4566666666666655532  34566666666666666555  23556666666666666


Q ss_pred             CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCC
Q 016686          103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID  155 (384)
Q Consensus       103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~  155 (384)
                      .++...+..+..+ ++|+.|++++|.++......+ ..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGL-KSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTC-TTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCC-CCCCEEECCCCCCCeeChhhh-hcCccccEEEeCCCCee
Confidence            6665555555555 666666666666654333222 44666777777666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=2.2e-14  Score=118.04  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=73.2

Q ss_pred             CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc-c-ccCCCCccE
Q 016686           20 NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-F-LTQMKALEH   96 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~-~~~~~~L~~   96 (384)
                      ++++|++|++++|.++.++. +. ..++|++|++++|.++++ .  .+..+++|++|++++|.+..++ . +..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-c--ccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            45566666666666665532 33 233666666666666655 2  2446666666666666666552 2 355666666


Q ss_pred             EEeeCCCCCchhHH--HHHhccCCccEEEccCCCCCchHHH--HHHhCCCCCCEEeccCCCCC
Q 016686           97 LDLSSSMIGDDSVE--MVACVGANLRNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQID  155 (384)
Q Consensus        97 L~L~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~i~  155 (384)
                      |++++|.+.. ++.  .+..+ ++|+.|++++|.++.....  ..++.+++|+.|+++.|...
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l-~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCc-chhhHhhhcC-CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666666653 332  45555 6666666666665432111  12345667777777666544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=9.7e-14  Score=114.28  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=101.7

Q ss_pred             CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686          144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  223 (384)
Q Consensus       144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  223 (384)
                      .+.+++++++++... ..  ..+++++|++++|.+.+..+.            .+..+++|++|++++|.+++..+..+.
T Consensus         9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~   73 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSQNQIQSLPDGVFD   73 (177)
T ss_dssp             TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCcccEeCHH------------HhcCcccccEEECCCCcceEeChhHcc
Confidence            456666666665332 11  235788888888888766555            567788888888888888877666678


Q ss_pred             cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHH
Q 016686          224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED  290 (384)
Q Consensus       224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  290 (384)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            8888899999888888877777888899999999999998776666778889999999999886644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.51  E-value=1.5e-13  Score=127.84  Aligned_cols=239  Identities=13%  Similarity=0.192  Sum_probs=182.8

Q ss_pred             CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEE
Q 016686           21 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLD   98 (384)
Q Consensus        21 ~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~   98 (384)
                      +..++.+.+.+ .++.|+...+.-.+|+++.+..+ ++.+... +|.++ +|+.+.+.. .+..+  ..|..|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTT-TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHH-hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            46777777765 36667666663347999999776 7766654 46664 699999986 56655  5788999999999


Q ss_pred             eeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcC
Q 016686           99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI  178 (384)
Q Consensus        99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  178 (384)
                      +++|.++......+. + .+|+.+.+..+ +......+| ..+++|+.+.+..+ ++.....+|.. .+|+.+.+. +.+
T Consensus       187 l~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             CTTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTTTT-TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             cCCCcceEechhhEe-e-cccCEEEeCCc-hheehhhHh-hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            999988865555555 4 89999999754 554444444 56889999999764 55555567766 789999995 445


Q ss_pred             CcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC-----cccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCC
Q 016686          179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT  253 (384)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~  253 (384)
                      ......            +|..+++|+.+.+.++.+.     .+....|.+|++|+.+.+. +.++.....+|.++++|+
T Consensus       260 ~~I~~~------------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          260 TNIASR------------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CEECTT------------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             cEEChh------------HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            555455            7889999999999888665     4566778899999999998 458887888999999999


Q ss_pred             EEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686          254 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       254 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  286 (384)
                      .+.+..+ ++......|..+ +|+.+.+.+|..
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            9999654 777777889998 999999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=130.75  Aligned_cols=188  Identities=15%  Similarity=0.154  Sum_probs=128.9

Q ss_pred             CCCccEEEeecCCCCCc------cccc-CCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHH---
Q 016686           69 TSLLSFLDVSNSSLSRF------CFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA---  138 (384)
Q Consensus        69 l~~L~~L~ls~n~l~~~------~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---  138 (384)
                      ++.|+.|++++|.++..      ..+. ..++|++|++++|.+++.....+...+++|+.|++++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            36788888888887654      1222 2368889999999888766655544337889999999998876555443   


Q ss_pred             -hCCCCCCEEeccCCCCChHHH----HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCC
Q 016686          139 -GHLPNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ  213 (384)
Q Consensus       139 -~~l~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  213 (384)
                       ...++|++|++++|.+++...    ..+..+++|++|++++|.+.+.....        -...+...++|+.|++++|.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~--------L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL--------LAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH--------HHHHGGGCSCCCEEECCSSC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH--------HHHHHhcCCCcCeEECCCCC
Confidence             235789999999998876443    34467888999999999887543210        01156677889999999999


Q ss_pred             CCcccc----cccccCCCCcEEEcCCCCCChhhHHhccCCCC-----CCEEE--ccCCccCc
Q 016686          214 VSDATL----FPLSTFKELIHLSLRNASLTDVSLHQLSSLSK-----LTNLS--IRDAVLTN  264 (384)
Q Consensus       214 l~~~~~----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-----L~~L~--l~~n~l~~  264 (384)
                      +++...    ..+..+++|++|++++|.|++.....+..+..     ++.+.  +..+.+..
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            987543    33446788999999999999887776654322     55555  55555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=7.3e-14  Score=115.05  Aligned_cols=133  Identities=14%  Similarity=0.197  Sum_probs=104.0

Q ss_pred             CccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686          118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  197 (384)
Q Consensus       118 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  197 (384)
                      ..+.+++++++++... .   ...++|++|++++|.+++..+..+..+++|++|++++|.+++..+.            .
T Consensus         8 ~~~~l~~~~~~l~~~p-~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~   71 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVP-T---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG------------V   71 (177)
T ss_dssp             ETTEEECCSSCCSSCC-T---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------T
T ss_pred             CCCEEEecCCCCccCC-C---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh------------H
Confidence            4567777777776432 1   2346788888888888766666677888888999988888876665            5


Q ss_pred             hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686          198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  266 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  266 (384)
                      +..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            778888999999999888877667788889999999999988876666788899999999999887643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=8.1e-14  Score=114.64  Aligned_cols=136  Identities=14%  Similarity=0.168  Sum_probs=100.9

Q ss_pred             cCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccE
Q 016686           42 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN  121 (384)
Q Consensus        42 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  121 (384)
                      ..+++|++|++++|.++.++..  ....++|++|++++|.+.+++.+..+++|++|++++|.+++..+..+..+ ++|+.
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~--~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQAL-PDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCG--GGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHC-TTCCE
T ss_pred             CCcCCceEEEeeCCCCchhHHh--hhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcC-CCCCE
Confidence            3788999999999999877432  12335899999999999888888888999999999999986544555777 88999


Q ss_pred             EEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH---hhhCCCCccEEEeeCCcCCc
Q 016686          122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS---YMSMMPSLKFIDISNTDIKG  180 (384)
Q Consensus       122 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~---~l~~~~~L~~L~l~~n~l~~  180 (384)
                      |++++|.++.......++.+++|++|++++|.++.....   .+..+++|+.|++++|...+
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999998886543211235678888888888887643221   36677788888887776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.7e-14  Score=121.15  Aligned_cols=118  Identities=19%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             chhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc-cccCCCCccEEEeeCCCCCchhHHHH
Q 016686           34 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMV  112 (384)
Q Consensus        34 i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~  112 (384)
                      ++.+|..+..+++|++|++++|.++.++   .+.++++|+.|++++|.+..++ .+..+++|++|++++|.+++ .+ .+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~---~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~  111 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC---CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc---ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence            4445555556666666666666666554   2335666666666666665552 23334566666666666654 22 45


Q ss_pred             HhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686          113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY  157 (384)
Q Consensus       113 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  157 (384)
                      ..+ ++|+.|++++|.++.......++.+++|++|++++|.+.+.
T Consensus       112 ~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          112 EKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            555 56666666666665433212234556666666666655433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=6.6e-15  Score=123.67  Aligned_cols=125  Identities=19%  Similarity=0.186  Sum_probs=103.4

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL   99 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L   99 (384)
                      .+++|++|++++|.++++| .+..+++|++|++++|.++.++..+  ..+++|++|++++|.+..++.+..+++|++|++
T Consensus        46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~--~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD--AVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH--HHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred             cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh--hcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence            6889999999999999987 6668999999999999999877643  367899999999999999888888999999999


Q ss_pred             eCCCCCchhH-HHHHhccCCccEEEccCCCCCchHHH---------HHHhCCCCCCEEe
Q 016686          100 SSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVG---------ILAGHLPNLEILS  148 (384)
Q Consensus       100 ~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~---------~~~~~l~~L~~L~  148 (384)
                      ++|.+++... ..+..+ ++|+.|++++|.+.+..+.         ..+..+++|+.|+
T Consensus       123 ~~N~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCcCCchhHHHHHhcC-CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999986433 577888 9999999999988655332         2234567777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=3.6e-12  Score=104.07  Aligned_cols=109  Identities=22%  Similarity=0.200  Sum_probs=91.4

Q ss_pred             CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhc
Q 016686          167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL  246 (384)
Q Consensus       167 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l  246 (384)
                      ..+.+++++|.++..+..             +  .++++.|++++|.+++..+..+..+++|++|++++|++++..+..|
T Consensus        10 ~~~~l~~s~n~l~~ip~~-------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG-------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCCEEEeCCCCcCccCcc-------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence            357788888888775433             2  3778999999999998878888899999999999999998877778


Q ss_pred             cCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHH
Q 016686          247 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED  290 (384)
Q Consensus       247 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  290 (384)
                      ..+++|++|++++|++++..+..|..+++|+.|++++|++.+.+
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            89999999999999999877777888999999999999886543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=9e-12  Score=102.04  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=87.9

Q ss_pred             ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhcc
Q 016686          168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  247 (384)
Q Consensus       168 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  247 (384)
                      -+.++++++.+...+..             +  .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|.
T Consensus        14 ~~~l~~~~n~l~~iP~~-------------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG-------------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             SSEEECCSSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcEEEeCCCCCCccCCC-------------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence            36788888888665433             2  26788999999999888788888889999999999999887666778


Q ss_pred             CCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHH
Q 016686          248 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED  290 (384)
Q Consensus       248 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  290 (384)
                      .+++|++|++++|++++..+..|..+++|+.|++++|++.+.+
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            8899999999999998876666888899999999999886543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=7.4e-12  Score=102.19  Aligned_cols=107  Identities=16%  Similarity=0.241  Sum_probs=77.0

Q ss_pred             CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686          144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  223 (384)
Q Consensus       144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  223 (384)
                      .+.+++++|.++.. |..+  .+.++.|++++|.+++..+.            .+..+++|++|++++|++++..+..+.
T Consensus        11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A           11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPG------------VFDRLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChh------------hhcCcccCCEEECCCCCcCccChhhcc
Confidence            45666766666532 2222  35677777777777776666            577777888888888888776666677


Q ss_pred             cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686          224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      .+++|++|++++|++++..+..+..+++|++|++++|+++..
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            788888888888888776666677888888888888877653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=1.2e-11  Score=101.29  Aligned_cols=106  Identities=11%  Similarity=0.199  Sum_probs=78.8

Q ss_pred             CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686          144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  223 (384)
Q Consensus       144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  223 (384)
                      -+.+++++|+++. .|..+  .+.|+.|++++|.+.+..+.            .+..+++|+.|++++|++++..+..+.
T Consensus        14 ~~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPG------------VFDHLVNLQQLYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccCHH------------HhcCCcCCCEEECCCCCCCccChhHhC
Confidence            3567777776653 23323  26778888888888777666            577788888888888888876666667


Q ss_pred             cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCc
Q 016686          224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                      .+++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            78888888888888887666667888888888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.22  E-value=2.4e-11  Score=113.13  Aligned_cols=85  Identities=15%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  276 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  276 (384)
                      .+..+.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..+...|..|++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4556667777777554 55555566677777777777543 66656667777777777777655 665566677777777


Q ss_pred             CEEEccCC
Q 016686          277 KLLDLHGG  284 (384)
Q Consensus       277 ~~L~l~~n  284 (384)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            77777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.10  E-value=5.5e-10  Score=102.06  Aligned_cols=57  Identities=23%  Similarity=0.195  Sum_probs=30.2

Q ss_pred             cCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHH--hccCCccEEEcc
Q 016686           67 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA--CVGANLRNLNLS  125 (384)
Q Consensus        67 ~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~L~  125 (384)
                      ..+|.|+.|.++++.-...+.+. +++|++|++..+.+.......+.  .+ |+|+.|+|+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~  227 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLY  227 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEE
T ss_pred             hcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEe
Confidence            35566777777665211122222 55666666666666554444444  34 566666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=2.8e-10  Score=103.93  Aligned_cols=94  Identities=21%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             hcCCCCCCEEEccC-CCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686          198 LQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  276 (384)
Q Consensus       198 ~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  276 (384)
                      +..+++|+.|++++ |.+++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..+..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            34455666677764 666666556666667777777777777766666667777777777777777665544444444 7


Q ss_pred             CEEEccCCcCCCHHHH
Q 016686          277 KLLDLHGGWLLTEDAI  292 (384)
Q Consensus       277 ~~L~l~~n~~~~~~~~  292 (384)
                      +.|+|.+|.+.+.+.+
T Consensus       106 ~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A          106 QELVLSGNPLHCSCAL  121 (347)
T ss_dssp             CEEECCSSCCCCCGGG
T ss_pred             eEEEeeCCCccCCCcc
Confidence            7777777777555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=3.1e-09  Score=97.04  Aligned_cols=158  Identities=17%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             CCCCCcEEEccCCCch----------hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--cc
Q 016686           20 NISSLECLNLSNCTID----------SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CF   87 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~----------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~   87 (384)
                      .+++|+.|.+......          .+...+..+|+|++|.++++.-..+++ +   .+++|+.|++..+.+...  ..
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCCCChHHHHH
Confidence            4567777777543221          133333466777788777763112222 1   357777777777766543  22


Q ss_pred             c--cCCCCccEEEeeCC--CC-Cch----hHHHH--HhccCCccEEEccCCCCCchHHHHHHh--CCCCCCEEeccCCCC
Q 016686           88 L--TQMKALEHLDLSSS--MI-GDD----SVEMV--ACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQI  154 (384)
Q Consensus        88 ~--~~~~~L~~L~L~~n--~l-~~~----~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~i  154 (384)
                      +  ..+++|++|+|+.+  .. ...    +...+  ..+ ++|+.|.+.+|.+.......++.  .+++|++|+++.|.+
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            2  25777777777531  11 100    00111  124 77888888777776544444432  466788888888877


Q ss_pred             ChHHHHhh----hCCCCccEEEeeCCcCCcch
Q 016686          155 DDYAISYM----SMMPSLKFIDISNTDIKGFI  182 (384)
Q Consensus       155 ~~~~~~~l----~~~~~L~~L~l~~n~l~~~~  182 (384)
                      ++..+..+    ..+++|+.|+++.|.+++..
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            76554443    34577888888877776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.01  E-value=3.8e-09  Score=98.19  Aligned_cols=244  Identities=10%  Similarity=0.161  Sum_probs=135.2

Q ss_pred             CCCCCCCcEEEccCCC---chhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCC
Q 016686           18 LPNISSLECLNLSNCT---IDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQM   91 (384)
Q Consensus        18 l~~~~~L~~L~ls~n~---i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~   91 (384)
                      +.+|.+|+.+.+..+.   ++.+....| .+.+|+.+.+..+ ++.+... .|..+.+|+.+.+..+ +..+  ..+..+
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~-aF~~c~~L~~i~lp~~-~~~I~~~~F~~c  159 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE-AFHHCEELDTVTIPEG-VTSVADGMFSYC  159 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT-TTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh-hhhhhcccccccccce-eeeecccceecc
Confidence            3456666666665442   444444444 5566665555432 3333332 3556666666666433 2222  345556


Q ss_pred             CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccC--------------------
Q 016686           92 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG--------------------  151 (384)
Q Consensus        92 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~--------------------  151 (384)
                      ..|+.+.+..+ +......++..  ..|+.+.+..+... .....+ ..+..++......                    
T Consensus       160 ~~L~~i~~~~~-~~~I~~~aF~~--~~l~~i~ip~~~~~-i~~~af-~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (394)
T 4gt6_A          160 YSLHTVTLPDS-VTAIEERAFTG--TALTQIHIPAKVTR-IGTNAF-SECFALSTITSDSESYPAIDNVLYEKSANGDYA  234 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTT--CCCSEEEECTTCCE-ECTTTT-TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred             cccccccccce-eeEeccccccc--cceeEEEECCcccc-cccchh-hhccccceecccccccccccceeeccccccccc
Confidence            66666666443 22222222322  34555555432211 111111 1233333322211                    


Q ss_pred             ----------------CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC
Q 016686          152 ----------------TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  215 (384)
Q Consensus       152 ----------------n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  215 (384)
                                      +.+......+|..+..|+.+.+..+.. .....            +|..+..|+.+.+.. .++
T Consensus       235 ~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~------------aF~~c~~L~~i~l~~-~i~  300 (394)
T 4gt6_A          235 LIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTG------------AFMNCPALQDIEFSS-RIT  300 (394)
T ss_dssp             EEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTT------------TTTTCTTCCEEECCT-TCC
T ss_pred             ccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCc------------ccccccccccccCCC-ccc
Confidence                            111112234555667777777654332 22222            577788888888863 466


Q ss_pred             cccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCc
Q 016686          216 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  285 (384)
Q Consensus       216 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  285 (384)
                      .+....|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..+...|..|++|+.+++.++.
T Consensus       301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            666677888888998888754 66666778888889998888544 666677788888899999888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=9.3e-10  Score=100.47  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             EEEccCC-CCCchHHHHHHhCCCCCCEEeccC-CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhh
Q 016686          121 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  198 (384)
Q Consensus       121 ~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .++++++ +++. .|.  +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..+.            .|
T Consensus        12 ~v~~~~~n~l~~-ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------~~   76 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------AF   76 (347)
T ss_dssp             CEECCSSCCCTT-TTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------GG
T ss_pred             EEEcCCCCCCCc-cCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------Hh
Confidence            4566665 5553 333  24556666666664 666655555666666666666666666666555            46


Q ss_pred             cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..+++|+.|+|++|++++..+..+..++ |+.|++.+|.+.
T Consensus        77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6666666666666666665444444443 666666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.98  E-value=3.1e-09  Score=98.80  Aligned_cols=259  Identities=10%  Similarity=0.141  Sum_probs=163.9

Q ss_pred             CCCCCcEEEccCCC---CCC-----CCCCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCC
Q 016686            1 MFPRLSFLNLAWTG---VTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSL   71 (384)
Q Consensus         1 ~l~~L~~L~l~~n~---i~~-----l~~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~   71 (384)
                      +|++|+.+.+..+.   ++.     +..|.+|+.+.+..+ ++.+....+ .+.+|+.+.+..+ +..+... .|..+..
T Consensus        85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~-~F~~c~~  161 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADG-MFSYCYS  161 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTT-TTTTCTT
T ss_pred             CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccc-ceecccc
Confidence            47889999988764   333     447788888877654 455555544 8888999988643 4444333 4667888


Q ss_pred             ccEEEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC---------------------
Q 016686           72 LSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR---------------------  128 (384)
Q Consensus        72 L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~---------------------  128 (384)
                      |+.+.+..+ +..+  ..+ ....|+.+.+..+. ......++..+ .+++........                     
T Consensus       162 L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (394)
T 4gt6_A          162 LHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSEC-FALSTITSDSESYPAIDNVLYEKSANGDYALIR  237 (394)
T ss_dssp             CCEEECCTT-CCEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTC-TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE
T ss_pred             cccccccce-eeEeccccc-cccceeEEEECCcc-cccccchhhhc-cccceecccccccccccceeecccccccccccc
Confidence            888888654 3333  223 23557777665432 21222333333 334333222111                     


Q ss_pred             ---------------CCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhh
Q 016686          129 ---------------FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL  193 (384)
Q Consensus       129 ---------------l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  193 (384)
                                     +......+| ..+..|+.+.+..+ +......+|..++.|+.+.+. +.+......         
T Consensus       238 ~~~~~~~~~~~ip~~v~~i~~~aF-~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~---------  305 (394)
T 4gt6_A          238 YPSQREDPAFKIPNGVARIETHAF-DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPES---------  305 (394)
T ss_dssp             CCTTCCCSEEECCTTEEEECTTTT-TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTT---------
T ss_pred             cccccccceEEcCCcceEccccee-eecccccEEecccc-cceecCcccccccccccccCC-CcccccCce---------
Confidence                           111112222 46788999998654 333455678899999999996 345544444         


Q ss_pred             hHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC
Q 016686          194 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  273 (384)
Q Consensus       194 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  273 (384)
                         +|..+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.++++|+.+.+.++....   ..+..+
T Consensus       306 ---aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~  377 (394)
T 4gt6_A          306 ---VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTD  377 (394)
T ss_dssp             ---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCC
T ss_pred             ---eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhcc
Confidence               7899999999999875 77777778999999999999754 777778899999999999999876432   356677


Q ss_pred             CCCCEEEccCCcC
Q 016686          274 RSLKLLDLHGGWL  286 (384)
Q Consensus       274 ~~L~~L~l~~n~~  286 (384)
                      .+|+.+.+..+.+
T Consensus       378 ~~L~~i~i~~~~~  390 (394)
T 4gt6_A          378 SGLQNLPVAPGSI  390 (394)
T ss_dssp             CCC----------
T ss_pred             CCCCEEEeCCCCE
Confidence            8899888876653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.94  E-value=2.1e-09  Score=99.92  Aligned_cols=165  Identities=11%  Similarity=0.162  Sum_probs=106.3

Q ss_pred             CCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccE
Q 016686           91 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF  170 (384)
Q Consensus        91 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  170 (384)
                      ...|+.+.+... +.......+..+ ..++.+.+..+... ..... +..+..++.+......+.   ...+..+.+|+.
T Consensus       229 ~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~~-i~~~~-F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~  301 (394)
T 4fs7_A          229 KTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKLR-IGGSL-FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTE  301 (394)
T ss_dssp             TCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTCE-ECSCT-TTTCTTCCEEEECSSEEC---TTTTTTCTTCCE
T ss_pred             cCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcce-eeccc-cccccccceeccCceeec---cccccccccccc
Confidence            344555544322 222222334444 56666666544321 11111 234566666665544332   235667888988


Q ss_pred             EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCC
Q 016686          171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS  250 (384)
Q Consensus       171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  250 (384)
                      +.+..+ +......            +|..+.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+++
T Consensus       302 i~l~~~-i~~I~~~------------aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          302 VKLLDS-VKFIGEE------------AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             EEECTT-CCEECTT------------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccc-cceechh------------hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            888654 4433344            7889999999999765 77777788999999999999876 8877788999999


Q ss_pred             CCCEEEccCCccCccccccccCCCCCCEE
Q 016686          251 KLTNLSIRDAVLTNSGLGSFKPPRSLKLL  279 (384)
Q Consensus       251 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  279 (384)
                      +|+.+.+..+ ++. ....|..+++|+.+
T Consensus       367 ~L~~i~lp~~-~~~-~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKR-LEQ-YRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred             CCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence            9999999765 333 23567788877764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.93  E-value=1.6e-09  Score=87.48  Aligned_cols=104  Identities=17%  Similarity=0.220  Sum_probs=90.0

Q ss_pred             CCCCEEEccCCCCCcccccccccCCCCcEEEcCCC-CCChhhHHhccCC----CCCCEEEccCCc-cCccccccccCCCC
Q 016686          202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSL----SKLTNLSIRDAV-LTNSGLGSFKPPRS  275 (384)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~  275 (384)
                      ..|+.|+++++.+++.....+..+++|++|+|++| .|++.....++.+    ++|++|++++|. +++.+...+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            46899999999999888888889999999999999 5999888888875    489999999985 99999888999999


Q ss_pred             CCEEEccCCcCCCHHH--HHHHHHhCCCceee
Q 016686          276 LKLLDLHGGWLLTEDA--ILQFCKMHPRIEVW  305 (384)
Q Consensus       276 L~~L~l~~n~~~~~~~--~~~~~~~~~~l~~~  305 (384)
                      |+.|++++|.-+++.+  ...+...+|.+++.
T Consensus       141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~  172 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK  172 (176)
T ss_dssp             CCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence            9999999998777654  56677889998865

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.92  E-value=2.4e-09  Score=88.44  Aligned_cols=89  Identities=17%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             hcCCCCCCEEEccCCCCCcccc----cccccCCCCcEEEcCCCCCChhh----HHhccCCCCCCEEEc--cCCccCcccc
Q 016686          198 LQNLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKLTNLSI--RDAVLTNSGL  267 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l--~~n~l~~~~~  267 (384)
                      +...++|++|++++|.+++...    ..+...+.|++|+|++|.|++..    ...+...++|++|++  ++|.+++.+.
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            3344455555555555544322    22234455666666666665542    334455666777777  6677666543


Q ss_pred             c----cccCCCCCCEEEccCCcC
Q 016686          268 G----SFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       268 ~----~~~~~~~L~~L~l~~n~~  286 (384)
                      .    .+...++|++|++++|.+
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeccCCCC
Confidence            3    233346788888888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=3.9e-09  Score=87.13  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCCCCCEEeccCC-CCChHHH----HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCC
Q 016686          140 HLPNLEILSLSGT-QIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV  214 (384)
Q Consensus       140 ~l~~L~~L~l~~n-~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  214 (384)
                      ..+.|++|++++| .+++...    ..+...++|++|++++|.+.......+        ...+...++|++|++++|.+
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--------~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------AEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------HHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--------HHHHHhCCCcCEEECcCCcC
Confidence            3445555555555 4443322    222334455555555555543221100        00233445566666666666


Q ss_pred             Cccc----ccccccCCCCcEEEc--CCCCCChhhH----HhccCCCCCCEEEccCCccCcc
Q 016686          215 SDAT----LFPLSTFKELIHLSL--RNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNS  265 (384)
Q Consensus       215 ~~~~----~~~l~~~~~L~~L~L--~~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~  265 (384)
                      ++..    ...+...+.|++|++  ++|.+++...    ..+...++|++|++++|.+...
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            5542    334445566666666  6666665432    3344556777777777776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.67  E-value=3.4e-07  Score=84.43  Aligned_cols=82  Identities=21%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCC
Q 016686          198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK  277 (384)
Q Consensus       198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  277 (384)
                      +..+..|+.+.+..+ +.......+..|++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..+...|..|++|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            444444444444332 33333334444555555555444444444444555555555554322 3333344444445555


Q ss_pred             EEEc
Q 016686          278 LLDL  281 (384)
Q Consensus       278 ~L~l  281 (384)
                      .+.+
T Consensus       337 ~i~i  340 (379)
T 4h09_A          337 TISY  340 (379)
T ss_dssp             CCCC
T ss_pred             EEEE
Confidence            4444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.66  E-value=4e-07  Score=83.98  Aligned_cols=140  Identities=13%  Similarity=0.229  Sum_probs=98.0

Q ss_pred             CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686          117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  196 (384)
Q Consensus       117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  196 (384)
                      .+++.+.+..+ +.......+ ..+..|+.+.+..+ ++.....++..+.+++.+.+..+ +......            
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~------------  280 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL------------  280 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT------------
T ss_pred             cccceeeeccc-eeEEccccc-cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc------------
Confidence            45555555432 221222222 34677887777554 55455566777888888887643 4433333            


Q ss_pred             hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCC
Q 016686          197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR  274 (384)
Q Consensus       197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~  274 (384)
                      +|..+.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.++++|+.+.+..+ ++..+..+|..+.
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            6889999999999998888887888999999999999754 77777788999999999998654 6655556666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=2.4e-07  Score=74.73  Aligned_cols=82  Identities=18%  Similarity=0.302  Sum_probs=40.8

Q ss_pred             CCccEEEeecCCCCCc--ccccCCCCccEEEeeCCC-CCchhHHHHHhc---cCCccEEEccCCC-CCchHHHHHHhCCC
Q 016686           70 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACV---GANLRNLNLSNTR-FSSAGVGILAGHLP  142 (384)
Q Consensus        70 ~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~---~~~L~~L~L~~n~-l~~~~~~~~~~~l~  142 (384)
                      ..|++|++++|.+++.  ..+..+++|++|+|++|. +++.....+..+   +++|++|++++|. ++......+ ..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence            3456666666655443  344555556666666553 555444444432   1245555555542 444444443 2345


Q ss_pred             CCCEEeccCC
Q 016686          143 NLEILSLSGT  152 (384)
Q Consensus       143 ~L~~L~l~~n  152 (384)
                      +|++|+++++
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.6e-07  Score=81.45  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             CCCCccEEeccCCCCCchhHH-hhhcCCCCccEEEeecCCCCCcccccCCC--CccEEEeeCCCCCc
Q 016686           43 NKAPLAKISLAGTTFINEREA-FLYIETSLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGD  106 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~--~L~~L~L~~n~l~~  106 (384)
                      ++++|++|+|++|.++++... -.+..+++|+.|+|++|.|.+...+..+.  +|++|++++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence            566677777777766654321 01335666777777777666653333333  66666666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.21  E-value=7e-06  Score=67.42  Aligned_cols=87  Identities=21%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             CCCCCCEEEccCCCCCcccccc----cccCCCCcEEEcCCCCCChhhH----HhccCCCCCCEEEccCC---ccCcccc-
Q 016686          200 NLNHLERLNLEQTQVSDATLFP----LSTFKELIHLSLRNASLTDVSL----HQLSSLSKLTNLSIRDA---VLTNSGL-  267 (384)
Q Consensus       200 ~~~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~L~~n~i~~~~~----~~l~~~~~L~~L~l~~n---~l~~~~~-  267 (384)
                      ..+.|+.|+|++|.+.+.....    +..-+.|++|+|+.|.|++...    ..+...+.|++|++++|   .+.+.+. 
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence            3344444444444444332222    2233445555555555544322    23344555666666543   3333222 


Q ss_pred             ---ccccCCCCCCEEEccCCcC
Q 016686          268 ---GSFKPPRSLKLLDLHGGWL  286 (384)
Q Consensus       268 ---~~~~~~~~L~~L~l~~n~~  286 (384)
                         ..+..-++|++|+++.|.+
T Consensus       148 ~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          148 DMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCCcCeEeccCCCc
Confidence               2233346677777766654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.19  E-value=5.3e-06  Score=68.13  Aligned_cols=109  Identities=16%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             CCCccEEEeecC-CCCCc------ccccCCCCccEEEeeCCCCCchhHHHHHhcc---CCccEEEccCCCCCchHHHHHH
Q 016686           69 TSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA  138 (384)
Q Consensus        69 l~~L~~L~ls~n-~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~  138 (384)
                      -+.|++|+|+++ .|.+.      ..+...+.|+.|+|++|.+.+.....++.++   ..|+.|+|++|.|+......+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            345555555543 44322      2344455555666666655543332222211   5555666666555554443332


Q ss_pred             hC---CCCCCEEeccCC---CCChHH----HHhhhCCCCccEEEeeCCc
Q 016686          139 GH---LPNLEILSLSGT---QIDDYA----ISYMSMMPSLKFIDISNTD  177 (384)
Q Consensus       139 ~~---l~~L~~L~l~~n---~i~~~~----~~~l~~~~~L~~L~l~~n~  177 (384)
                      ..   -+.|++|+++++   .+.+..    ...+...+.|+.|+++.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            22   234666665433   334322    2333444555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=4.2e-06  Score=72.53  Aligned_cols=16  Identities=25%  Similarity=0.368  Sum_probs=7.3

Q ss_pred             CCCCCEEEccCCCCCc
Q 016686          201 LNHLERLNLEQTQVSD  216 (384)
Q Consensus       201 ~~~L~~L~l~~n~l~~  216 (384)
                      ++.|+.|++++|.+++
T Consensus       169 l~~L~~L~Ls~N~l~~  184 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYR  184 (267)
T ss_dssp             CTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            3444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.80  E-value=0.0013  Score=50.14  Aligned_cols=67  Identities=13%  Similarity=0.066  Sum_probs=47.6

Q ss_pred             cEEEcCCCCCC-hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHH
Q 016686          229 IHLSLRNASLT-DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK  297 (384)
Q Consensus       229 ~~L~L~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  297 (384)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+......|..+++|+.|+|++|++.++..+..+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~   78 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA   78 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHH
Confidence            35666666666 12443332  468888888888888777778888889999999999887776555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.0013  Score=50.29  Aligned_cols=14  Identities=14%  Similarity=0.306  Sum_probs=5.6

Q ss_pred             ccEEeccCCCCCch
Q 016686           47 LAKISLAGTTFINE   60 (384)
Q Consensus        47 L~~L~l~~n~~~~~   60 (384)
                      |++|+|++|.++.+
T Consensus        33 l~~L~Ls~N~l~~l   46 (130)
T 3rfe_A           33 TTELVLTGNNLTAL   46 (130)
T ss_dssp             CSEEECTTSCCSSC
T ss_pred             CCEEECCCCcCCcc
Confidence            33444444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 9e-08
 Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 94  LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLS 150
           ++ LD+    + D     +  +    + + L +   + A    ++      P L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 151 GTQIDDYAISYM-----SMMPSLKFIDISN 175
             ++ D  +  +     +    ++ + + N
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 2e-07
 Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM----PSLKFIDI 173
           ++++L++     S A    L   L   +++ L    + +     +S      P+L  +++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 174 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 209
            + ++       G      +          +++L+L
Sbjct: 63  RSNEL-------GDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 8e-06
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 72  LSFLDVSNSSLSRFCF---LTQMKALEHLDLSSSMIGDDSVEMVACVGA---NLRNLNLS 125
           +  LD+    LS   +   L  ++  + + L    + +   + ++        L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 126 NTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMMPS 167
           +      GV  +   L      ++ LSL    +       +S    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 91  MKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAGHLPN---- 143
              L  L L+   + D S   +A       +LR L+LSN     AG+  L   +      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 144 LEILSLSGTQIDDYAISYMSMM----PSLKFI 171
           LE L L      +     +  +    PSL+ I
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 70  SLLSFLDVSNSSLSRFCF------LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANL 119
           S+L  L +++  +S          L    +L  LDLS++ +GD  +  +       G  L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 120 RNLNLSNTRFSSAGVGILAG---HLPNLEILS 148
             L L +  +S      L       P+L ++S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 24/164 (14%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           L+ LD++N+ +S    L+ +  L  L L ++ I + S          L  L       + 
Sbjct: 243 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA------GLTALTNLELNENQ 296

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
                   +L NL  L+L    I D  IS +S +  L+ +  +N  +             
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD----------- 343

Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 235
              +++L NL ++  L+    Q+SD  L PL+    +  L L +
Sbjct: 344 ---VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 19/174 (10%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177
           NL  L+L+  +    G       L NL  L L+  QI +  ++ +S +  L  + +    
Sbjct: 220 NLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQ 274

Query: 178 IKGFIQQVGAETDLVLSL--------TALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 229
           I       G      L L        + + NL +L  L L    +SD  + P+S+  +L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 332

Query: 230 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283
            L   N  ++DVS   L++L+ +  LS     +  S L        +  L L+ 
Sbjct: 333 RLFFANNKVSDVS--SLANLTNINWLSAGHNQI--SDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 34/178 (19%), Positives = 75/178 (42%), Gaps = 15/178 (8%)

Query: 1   MFPRLSFLNLAWTGVTKLPNISSLEC---LNLSNCTIDSILEGNENKAPLAKISLAGTTF 57
           +   L  L+L    +  +  ++SL     L+L+N  I ++   +     L ++ L     
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQI 275

Query: 58  INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 117
            N          + L+ L+++ + L     ++ +K L +L L  + I  D   + +    
Sbjct: 276 SNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDISPVSSLT-- 329

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
            L+ L  +N + S   V  L  +L N+  LS    QI D  ++ ++ +  +  + +++
Sbjct: 330 KLQRLFFANNKVS--DVSSL-ANLTNINWLSAGHNQISD--LTPLANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 29/277 (10%)

Query: 3   PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 57
           P  + L+L    +T++      N+ +L  L L N  I  I  G        +        
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 58  INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG- 116
           + E    +      L   +   + + +  F   +  +  ++L ++ +    +E  A  G 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
             L  + +++T  ++    I  G  P+L  L L G +I     + +  + +L  + +S  
Sbjct: 150 KKLSYIRIADTNITT----IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 177 DIKGFIQQ-----------VGAETDLVLSLTALQNLNHLERLNLEQTQVSD------ATL 219
            I                       LV     L +  +++ + L    +S          
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 220 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS 256
              +       +SL +  +    +   S+   +   +
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 11/180 (6%)

Query: 115 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174
           +  +   L+L N + +    G    +L NL  L L   +I   +    + +  L+ + +S
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 175 NTDIKGFIQQVGAETDLV---------LSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 225
              +K   +++      +         +  +    LN +  + L    +  + +     F
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAF 146

Query: 226 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 285
           + +  LS    + T+++         LT L +    +T     S K   +L  L L    
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 28/252 (11%), Positives = 81/252 (32%), Gaps = 25/252 (9%)

Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
           LD++  +L       ++ +   +         D           +++++LSN+    + +
Sbjct: 5   LDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID---------------------I 173
             +      L+ LSL G ++ D  ++ ++   +L  ++                     +
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 174 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 233
              ++            + ++  +            +  Q SD +         +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 234 RNASLTDVSLHQLSSLSKLTNLSIRD-AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 292
            +  L +    +   L+ L +LS+     +    L       +LK L + G  ++ +  +
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG--IVPDGTL 241

Query: 293 LQFCKMHPRIEV 304
               +  P +++
Sbjct: 242 QLLKEALPHLQI 253

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 23/118 (19%)

Query: 75  LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN------------- 121
           L +++  L+  C L Q+  + HLDLS + +      + A     +               
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 122 -------LNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLK 169
                  L L N R   +         P L +L+L G    Q +        M+PS+ 
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 74  FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 133
              ++ SS           +LE L++S++ + +            L  L  S    +   
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE-- 318

Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 175
              +     NL+ L +    +      +  +  S++ + +++
Sbjct: 319 ---VPELPQNLKQLHVEYNPLR----EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 16/82 (19%)

Query: 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177
           +L  LN+SN +        L    P LE L  S   + +       +  +LK + +    
Sbjct: 285 SLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNP 335

Query: 178 IKGFIQQVGAETDLVLSLTALQ 199
           ++ F        D+  S+  L+
Sbjct: 336 LREF-------PDIPESVEDLR 350

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 4/188 (2%)

Query: 72  LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
           ++ L    + ++    +  +  L  L+L  + I D +          L          S+
Sbjct: 43  ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
                    L          T +   +   +  +   +  +IS       +Q +      
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162

Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
           V  LT L NL+ L  L  +  ++SD  + PL++   LI + L+N  ++DVS   L++ S 
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSN 218

Query: 252 LTNLSIRD 259
           L  +++ +
Sbjct: 219 LFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.06

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.1e-25  Score=204.30  Aligned_cols=255  Identities=23%  Similarity=0.330  Sum_probs=184.1

Q ss_pred             CCCCcEEEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686            2 FPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS   78 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls   78 (384)
                      +.+|++|++++++|+++   ..+++|++|++++|+|+++++ +.++++|++|++++|.+.++++   +..+++|+.|+++
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~---l~~l~~L~~L~~~  118 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF  118 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred             hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc---ccccccccccccc
Confidence            46899999999988765   478999999999999998874 7799999999999999988764   4589999999998


Q ss_pred             cCCCCCcc-----------------------------------------------------------------cccCCCC
Q 016686           79 NSSLSRFC-----------------------------------------------------------------FLTQMKA   93 (384)
Q Consensus        79 ~n~l~~~~-----------------------------------------------------------------~~~~~~~   93 (384)
                      ++.+.+..                                                                 ....+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            87765431                                                                 1234456


Q ss_pred             ccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEe
Q 016686           94 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI  173 (384)
Q Consensus        94 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  173 (384)
                      ++.+++++|.+++..+  ...+ ++|+.|++++|.++...  . +..+++|+.|++++|.+++..  .+..+++|+++++
T Consensus       199 ~~~l~l~~n~i~~~~~--~~~~-~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l  270 (384)
T d2omza2         199 LESLIATNNQISDITP--LGIL-TNLDELSLNGNQLKDIG--T-LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKL  270 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             cceeeccCCccCCCCc--cccc-CCCCEEECCCCCCCCcc--h-hhcccccchhccccCccCCCC--cccccccCCEeec
Confidence            7777777777775443  3444 77888888888776542  2 246778888888888877553  3667788888888


Q ss_pred             eCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCC
Q 016686          174 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT  253 (384)
Q Consensus       174 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~  253 (384)
                      +++.+.+..              .+..++.++.+++..|.+++.  ..+..+++++.+++++|++++..  .+..+++|+
T Consensus       271 ~~~~l~~~~--------------~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~  332 (384)
T d2omza2         271 GANQISNIS--------------PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ  332 (384)
T ss_dssp             CSSCCCCCG--------------GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCC
T ss_pred             cCcccCCCC--------------ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCC
Confidence            888776543              244556666777776666653  33566777777777777777643  366677777


Q ss_pred             EEEccCCccCccccccccCCCCCCEEEccCCcCCC
Q 016686          254 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  288 (384)
Q Consensus       254 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  288 (384)
                      +|++++|++++.  ..+..+++|++|++++|++..
T Consensus       333 ~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         333 RLFFANNKVSDV--SSLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCB
T ss_pred             EEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCC
Confidence            777777777653  246667777777777777643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=4e-27  Score=211.20  Aligned_cols=247  Identities=17%  Similarity=0.201  Sum_probs=205.4

Q ss_pred             CCcEEEccCCCch---hHHhhCcCCCCccEEeccC-CCCCc-hhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCcc
Q 016686           23 SLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFIN-EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE   95 (384)
Q Consensus        23 ~L~~L~ls~n~i~---~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~   95 (384)
                      ++++|+++++.+.   .+|+.++++++|++|++++ |.+++ +|..  +.++++|++|++++|++.+.  ..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~--i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc--cccccccchhhhccccccccccccccchhhhc
Confidence            6899999999887   3788899999999999986 77764 5554  55899999999999998776  4577888999


Q ss_pred             EEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCC-CCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686           96 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN-LEILSLSGTQIDDYAISYMSMMPSLKFIDIS  174 (384)
Q Consensus        96 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  174 (384)
                      .+++++|.+....|..+..+ +.++.+++++|.+.+..+..+. .+.. ++.++++.|++++..+..+..+.. ..++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l-~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~  205 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECC
T ss_pred             ccccccccccccCchhhccC-cccceeeccccccccccccccc-ccccccccccccccccccccccccccccc-cccccc
Confidence            99999998887888888888 9999999999998877776653 4555 488899999888777777766644 468888


Q ss_pred             CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686          175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  254 (384)
Q Consensus       175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~  254 (384)
                      .+...+..+.            .+..++.++.+++++|.+.+.+ ..+..+++|+.|++++|++++.+|..++.+++|++
T Consensus       206 ~~~~~~~~~~------------~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~  272 (313)
T d1ogqa_         206 RNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEEECCGG------------GCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             cccccccccc------------cccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCE
Confidence            8888877776            5778899999999999988764 45788899999999999999889999999999999


Q ss_pred             EEccCCccCccccccccCCCCCCEEEccCCcCCC
Q 016686          255 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  288 (384)
Q Consensus       255 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  288 (384)
                      |++++|++++..|. +..+++|+.+++++|+..+
T Consensus       273 L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         273 LNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             EECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            99999999987774 5677888899999987644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.5e-24  Score=191.10  Aligned_cols=264  Identities=19%  Similarity=0.216  Sum_probs=218.2

Q ss_pred             CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686            5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS   81 (384)
Q Consensus         5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~   81 (384)
                      .+.+|-++.+++.+|.  .+++++|++++|+|+.+++. +..+++|++|++++|.+..+++. .|.+++.|++|++++|+
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh-hhhCCCccCEecccCCc
Confidence            5778888888998873  36899999999999999875 55999999999999999988665 47799999999999999


Q ss_pred             CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCch--HHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA--GVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      ++.++. ...+.++.|++.+|.+....+..+... ..+..+....+.....  .... +..+++|+.+++++|.+... +
T Consensus        91 l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~-~~~~~l~~~~n~~~~~~~~~~~-~~~l~~L~~l~l~~n~l~~l-~  166 (305)
T d1xkua_          91 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI-P  166 (305)
T ss_dssp             CSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC-C
T ss_pred             cCcCcc-chhhhhhhhhccccchhhhhhhhhhcc-ccccccccccccccccCCCccc-cccccccCccccccCCcccc-C
Confidence            988753 234678999999999997777777766 7888999888764332  1222 35688999999999987643 2


Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      .  ..++++++|++++|......+.            .+..++.+++|++++|.+++..+..+.++++|++|++++|+++
T Consensus       167 ~--~~~~~L~~L~l~~n~~~~~~~~------------~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         167 Q--GLPPSLTELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             S--SCCTTCSEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             c--ccCCccCEEECCCCcCCCCChh------------Hhhccccccccccccccccccccccccccccceeeeccccccc
Confidence            2  2467899999999998887776            6889999999999999999988888999999999999999998


Q ss_pred             hhhHHhccCCCCCCEEEccCCccCcccccccc------CCCCCCEEEccCCcCCC
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK------PPRSLKLLDLHGGWLLT  288 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~------~~~~L~~L~l~~n~~~~  288 (384)
                      .. |..+..+++|++|++++|+|+......|.      ..++|+.|++++|++..
T Consensus       233 ~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         233 KV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cc-ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            74 67899999999999999999986554443      34789999999999743

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=6.5e-24  Score=195.28  Aligned_cols=296  Identities=21%  Similarity=0.272  Sum_probs=201.7

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL   99 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L   99 (384)
                      .+.+|++|+++++.|+.+ +++..+++|++|++++|.++++++   +.++++|++|++++|++.+++.+..+++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~---l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc---ccCCcccccccccccccccccccccccccccccc
Confidence            567899999999999987 466789999999999999999874   5599999999999999999888999999999999


Q ss_pred             eCCCCCchhHHHHHhccCCccEEEccCCCCCc-----------------------------------------hHHHHHH
Q 016686          100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-----------------------------------------AGVGILA  138 (384)
Q Consensus       100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-----------------------------------------~~~~~~~  138 (384)
                      +++.+++..+..  .. ..+.......+.+..                                         .... ..
T Consensus       118 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  193 (384)
T d2omza2         118 FNNQITDIDPLK--NL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VL  193 (384)
T ss_dssp             CSSCCCCCGGGT--TC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             cccccccccccc--cc-ccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc-cc
Confidence            998876432211  11 222222221111100                                         0001 12


Q ss_pred             hCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686          139 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  218 (384)
Q Consensus       139 ~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  218 (384)
                      ..+++++.+++++|.+++..+  +..+++|+++++++|.+++..              .+..+++|+.+++++|.+++..
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~  257 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--------------TLASLTNLTDLDLANNQISNLA  257 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--------------hhhcccccchhccccCccCCCC
Confidence            346677888887777775533  455677888888888776542              3556777788888887777643


Q ss_pred             ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHh
Q 016686          219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM  298 (384)
Q Consensus       219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  298 (384)
                        .+..+++|++++++++++++..  .+..++.++.+.++.|.+++.  ..+..+++++.|++++|.+.....    ...
T Consensus       258 --~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~----l~~  327 (384)
T d2omza2         258 --PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP----VSS  327 (384)
T ss_dssp             --GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG----GGG
T ss_pred             --cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc----ccc
Confidence              3667777888888777777643  356677777777777777653  335666777777777777643211    344


Q ss_pred             CCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccc
Q 016686          299 HPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSS  366 (384)
Q Consensus       299 ~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~  366 (384)
                      +++++       .+.+++|++++ ++ .+..++++      +|++++- ++ +      .++++|+.|+|++|.
T Consensus       328 l~~L~-------~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l-~~-l------~~l~~L~~L~L~~Na  384 (384)
T d2omza2         328 LTKLQ-------RLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL-TP-L------ANLTRITQLGLNDQA  384 (384)
T ss_dssp             CTTCC-------EEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC-GG-G------TTCTTCSEEECCCEE
T ss_pred             CCCCC-------EEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC-hh-h------ccCCCCCEeeCCCCc
Confidence            56665       56777777664 33 46666655      5666643 32 4      578899999999883

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=3e-26  Score=205.43  Aligned_cols=243  Identities=16%  Similarity=0.172  Sum_probs=208.6

Q ss_pred             CCcEEEccCCCCCC---C----CCCCCCcEEEccC-CCch-hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccE
Q 016686            4 RLSFLNLAWTGVTK---L----PNISSLECLNLSN-CTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF   74 (384)
Q Consensus         4 ~L~~L~l~~n~i~~---l----~~~~~L~~L~ls~-n~i~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~   74 (384)
                      ++++|+++++.+.+   +    .++++|++|++++ |.+. .+|+.++++++|++|++++|.+.+.++. .+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccchhhhcc
Confidence            58899999998874   3    3799999999997 7777 6999999999999999999999987665 3668999999


Q ss_pred             EEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCC-ccEEEccCCCCCchHHHHHHhCCCCCCEEeccC
Q 016686           75 LDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN-LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG  151 (384)
Q Consensus        75 L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  151 (384)
                      +++++|.+...  ..+..++.++.+++++|.+.+..|..+..+ .. ++.++++.|++++..+..+ +.+ ....+++..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l-~~l~~~l~~~~n~l~~~~~~~~-~~l-~~~~l~l~~  206 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-SKLFTSMTISRNRLTGKIPPTF-ANL-NLAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-CTTCCEEECCSSEEEEECCGGG-GGC-CCSEEECCS
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccc-cccccccccccccccccccccc-ccc-ccccccccc
Confidence            99999976555  578999999999999999998888888887 55 4889999999987766554 334 455789988


Q ss_pred             CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEE
Q 016686          152 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL  231 (384)
Q Consensus       152 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  231 (384)
                      +...+..+..+..+++++.++++++.+.+.++.             +..+++++.|++++|++++.+|..++++++|++|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-------------~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L  273 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccc-------------cccccccccccCccCeecccCChHHhCCCCCCEE
Confidence            888777778888899999999999999877654             6778999999999999999899999999999999


Q ss_pred             EcCCCCCChhhHHhccCCCCCCEEEccCCc-cCc
Q 016686          232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTN  264 (384)
Q Consensus       232 ~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~  264 (384)
                      ++++|++++.+| .++.+++|+.+++++|+ +.+
T Consensus       274 ~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         274 NVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEES
T ss_pred             ECcCCcccccCC-CcccCCCCCHHHhCCCccccC
Confidence            999999998777 46788999999999997 444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-24  Score=189.48  Aligned_cols=227  Identities=18%  Similarity=0.252  Sum_probs=148.6

Q ss_pred             EEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee-CC
Q 016686           26 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS-SS  102 (384)
Q Consensus        26 ~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~-~n  102 (384)
                      .++.+++.++.+|..+.  +.+++|+|++|.++++++. .|.+++.|++|++++|.+..+  ..+..+..++.+... .+
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHH-Hhhcccccccccccccccccccccccccccccccccccccc
Confidence            44556666666665554  4566667766666666543 245666666666666666554  233344444444433 22


Q ss_pred             CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcch
Q 016686          103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI  182 (384)
Q Consensus       103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  182 (384)
                      .++...+..+                          +.+++|++|++++|.+....+..+....+|+.+++++|.+++..
T Consensus        92 ~~~~l~~~~~--------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          92 QLRSVDPATF--------------------------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (284)
T ss_dssp             TCCCCCTTTT--------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccccchhh--------------------------cccccCCEEecCCcccccccccccchhcccchhhhccccccccC
Confidence            2332222222                          34566666666666655444445556667777777777777665


Q ss_pred             hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCcc
Q 016686          183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  262 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  262 (384)
                      +.            .++.+++|+.|++++|.+++..+..+.++++|+++++++|++++..|..|..+++|++|++++|.+
T Consensus       146 ~~------------~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         146 DD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             TT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hh------------HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence            55            567777788888888888777677777788888888888888877777888888888888888888


Q ss_pred             CccccccccCCCCCCEEEccCCcCCCHHHHH
Q 016686          263 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL  293 (384)
Q Consensus       263 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  293 (384)
                      .+..+..|..+++|++|++++|++.+++...
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccccccccccccccCEEEecCCCCCCCccch
Confidence            8877777778888888888888876654433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.6e-23  Score=183.78  Aligned_cols=251  Identities=17%  Similarity=0.244  Sum_probs=204.8

Q ss_pred             CCCcEEEccCCCCCCC-----CCCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686            3 PRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD   76 (384)
Q Consensus         3 ~~L~~L~l~~n~i~~l-----~~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~   76 (384)
                      +++++|++++|.|+.+     .++++|++|++++|.+..+++. +.++++|++|++++|.++.++..    ..+.++.|.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~----~~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK----MPKTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS----CCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc----hhhhhhhhh
Confidence            5799999999999864     4788999999999999987554 55999999999999999988754    347899999


Q ss_pred             eecCCCCCc--ccccCCCCccEEEeeCCCCCc--hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686           77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  152 (384)
Q Consensus        77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  152 (384)
                      +..|.+..+  ..+.....++.++...+....  .....+..+ ++|+.+++++|.+... +.   ..+++|++|++++|
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l-~~L~~l~l~~n~l~~l-~~---~~~~~L~~L~l~~n  181 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTI-PQ---GLPPSLTELHLDGN  181 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSC-CS---SCCTTCSEEECTTS
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccc-cccCccccccCCcccc-Cc---ccCCccCEEECCCC
Confidence            999999887  356677788889888876542  234556777 8999999999998743 21   24689999999999


Q ss_pred             CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686          153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS  232 (384)
Q Consensus       153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  232 (384)
                      ......+..+..++.++.|++++|.+.+..+.            .+..+++|++|++++|.++.. |..+..+++|++|+
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~------------~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~  248 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVY  248 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEE
T ss_pred             cCCCCChhHhhccccccccccccccccccccc------------cccccccceeeeccccccccc-ccccccccCCCEEE
Confidence            98887778889999999999999999988777            688899999999999999874 67899999999999


Q ss_pred             cCCCCCChhhHHhc------cCCCCCCEEEccCCccCc--cccccccCCCC
Q 016686          233 LRNASLTDVSLHQL------SSLSKLTNLSIRDAVLTN--SGLGSFKPPRS  275 (384)
Q Consensus       233 L~~n~i~~~~~~~l------~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~  275 (384)
                      +++|+|+......|      ...++|+.|++++|++..  ..|..|..+..
T Consensus       249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             CCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence            99999987644333      457889999999999863  34444544333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.8e-23  Score=182.35  Aligned_cols=220  Identities=18%  Similarity=0.244  Sum_probs=157.7

Q ss_pred             cEEEccCCCCCCCC-CC-CCCcEEEccCCCchhHHhhC-cCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec-CC
Q 016686            6 SFLNLAWTGVTKLP-NI-SSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN-SS   81 (384)
Q Consensus         6 ~~L~l~~n~i~~l~-~~-~~L~~L~ls~n~i~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~-n~   81 (384)
                      ..++.++.+++.+| .+ +.+++|+|++|+|+.+|... ..+++|++|++++|.+..++.. .+..++.++.+.... +.
T Consensus        14 ~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~-~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc-cccccccccccccccccc
Confidence            35678888888886 34 47999999999999988764 4999999999999999988765 467788999988764 45


Q ss_pred             CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686           82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  159 (384)
Q Consensus        82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  159 (384)
                      +..+  ..+..+++|++|++++|.+....+..+... .+|+.+++++|++++                         ..+
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~l~l~~N~l~~-------------------------i~~  146 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQA-------------------------LPD  146 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCC-------------------------CCT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchh-cccchhhhccccccc-------------------------cCh
Confidence            6665  467888999999999988765444444444 555555555555543                         333


Q ss_pred             HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686          160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  239 (384)
Q Consensus       160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~  239 (384)
                      ..|..+++|++|++++|++....+.            ++..+++|+.+++++|.+++..|..+..+++|++|++++|.+.
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~------------~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hHhccccchhhcccccCcccccchh------------hhccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            3444555666666666666555554            4666677777777777777766666777777777777777777


Q ss_pred             hhhHHhccCCCCCCEEEccCCccCc
Q 016686          240 DVSLHQLSSLSKLTNLSIRDAVLTN  264 (384)
Q Consensus       240 ~~~~~~l~~~~~L~~L~l~~n~l~~  264 (384)
                      +..+..++.+++|++|++++|++..
T Consensus       215 ~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         215 ALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccccccccccccCEEEecCCCCCC
Confidence            7777777777777777777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=176.49  Aligned_cols=200  Identities=16%  Similarity=0.148  Sum_probs=119.0

Q ss_pred             CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEee
Q 016686           21 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS  100 (384)
Q Consensus        21 ~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~  100 (384)
                      ...+.+++.++++++.+|+.+.  +++++|+|++|.++.+++. .|.++++|++|++++|.|+.++.+..+++|++|+++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHH-Hhhccccccccccccccccccccccccccccccccc
Confidence            3455667777777777776664  5678888888888777654 366788888888888887777666677777777777


Q ss_pred             CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCc
Q 016686          101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG  180 (384)
Q Consensus       101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~  180 (384)
                      +|+++.. +..+..+ ++|+.|++++|.+..                         ..+..+..+.+++.|++++|.+..
T Consensus        86 ~N~l~~~-~~~~~~l-~~L~~L~l~~~~~~~-------------------------~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          86 HNQLQSL-PLLGQTL-PALTVLDVSFNRLTS-------------------------LPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             SSCCSSC-CCCTTTC-TTCCEEECCSSCCCC-------------------------CCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             ccccccc-ccccccc-cccccccccccccce-------------------------eeccccccccccccccccccccce
Confidence            7777632 2233333 455555555544433                         222233344444555555555444


Q ss_pred             chhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCC
Q 016686          181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA  260 (384)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n  260 (384)
                      ..+.            .+..++.++.+++++|++++..+..+..+++|++|++++|+|+. +|..+..+++|+.|++++|
T Consensus       139 l~~~------------~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         139 LPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSC
T ss_pred             eccc------------cccccccchhcccccccccccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCC
Confidence            4333            34445555555555555555544555555556666666555553 3444445566666666666


Q ss_pred             ccC
Q 016686          261 VLT  263 (384)
Q Consensus       261 ~l~  263 (384)
                      ++.
T Consensus       206 p~~  208 (266)
T d1p9ag_         206 PWL  208 (266)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=170.27  Aligned_cols=184  Identities=26%  Similarity=0.299  Sum_probs=141.6

Q ss_pred             CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEE
Q 016686           93 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  172 (384)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  172 (384)
                      ++++|+|++|.++...+..+..+ ++|++|++++|+++....   .+.+++|++|++++|+++.. +..+..+++|+.|+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N~l~~l~~---~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhcc-cccccccccccccccccc---cccccccccccccccccccc-cccccccccccccc
Confidence            44555555555554333444444 555555555555543221   13567788888888877643 34567889999999


Q ss_pred             eeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCC
Q 016686          173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  252 (384)
Q Consensus       173 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L  252 (384)
                      ++++.+.+..+.            .+..+.+++.+++++|.++...+..+..++.++.+++++|++++..+..+..+++|
T Consensus       107 l~~~~~~~~~~~------------~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_         107 VSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             CCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             ccccccceeecc------------ccccccccccccccccccceeccccccccccchhcccccccccccCcccccccccc
Confidence            999998877666            67888999999999999999877788889999999999999999888889999999


Q ss_pred             CEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHH
Q 016686          253 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ  294 (384)
Q Consensus       253 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  294 (384)
                      ++|++++|+++. .|..+...++|+.|+|++|++.+++.+..
T Consensus       175 ~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~CdC~~~~  215 (266)
T d1p9ag_         175 DTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEILY  215 (266)
T ss_dssp             CEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             ceeecccCCCcc-cChhHCCCCCCCEEEecCCCCCCCcchHH
Confidence            999999999995 67777788999999999999988765444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-20  Score=173.03  Aligned_cols=102  Identities=18%  Similarity=0.317  Sum_probs=62.2

Q ss_pred             CCcEEEccCCCCCC------CCCCCCCcEEEccCCCch-----hHHhhCcCCCCccEEeccCCCCCchhH-Hh--hh-cC
Q 016686            4 RLSFLNLAWTGVTK------LPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINERE-AF--LY-IE   68 (384)
Q Consensus         4 ~L~~L~l~~n~i~~------l~~~~~L~~L~ls~n~i~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~--~~-~~   68 (384)
                      +|++||++++++++      ++.+++++.|+|++|.|+     .+...+..+++|++|++++|.++.... .+  .+ ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46777777777764      346677777777777765     234445567777777777777653211 10  01 12


Q ss_pred             CCCccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCC
Q 016686           69 TSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIG  105 (384)
Q Consensus        69 l~~L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~  105 (384)
                      .++|++|++++|++++.      ..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            34677777777776543      24556677777777776554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.7e-18  Score=162.13  Aligned_cols=314  Identities=20%  Similarity=0.199  Sum_probs=203.4

Q ss_pred             CCCCcEEEccCCCCCC---------CCCCCCCcEEEccCCCchh-----HHhhCc-CCCCccEEeccCCCCCchhHH---
Q 016686            2 FPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDS-----ILEGNE-NKAPLAKISLAGTTFINEREA---   63 (384)
Q Consensus         2 l~~L~~L~l~~n~i~~---------l~~~~~L~~L~ls~n~i~~-----~~~~~~-~~~~L~~L~l~~n~~~~~~~~---   63 (384)
                      ++++++|+|++|.++.         +..+++|++|++++|.|+.     +...+. ...+|++|++++|.++.....   
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            5788999999998873         3478899999999999863     344444 446799999999998764211   


Q ss_pred             hhhcCCCCccEEEeecCCCCCcc-----------------------------------cccCCCCccEEEe---------
Q 016686           64 FLYIETSLLSFLDVSNSSLSRFC-----------------------------------FLTQMKALEHLDL---------   99 (384)
Q Consensus        64 ~~~~~l~~L~~L~ls~n~l~~~~-----------------------------------~~~~~~~L~~L~L---------   99 (384)
                      -.+..+++|++|++++|.+....                                   .+...+.++.+++         
T Consensus       106 ~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~  185 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  185 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             chhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccc
Confidence            12457899999999988764310                                   0111223344443         


Q ss_pred             --------------------eCCCCCch----hHHHHHhccCCccEEEccCCCCCchHH----HHHHhCCCCCCEEeccC
Q 016686          100 --------------------SSSMIGDD----SVEMVACVGANLRNLNLSNTRFSSAGV----GILAGHLPNLEILSLSG  151 (384)
Q Consensus       100 --------------------~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~l~~  151 (384)
                                          ..+.+...    ....+... +.++.+.+.+|.+.....    .........++.+++++
T Consensus       186 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~  264 (460)
T d1z7xw1         186 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  264 (460)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccc-ccccccchhhccccccccchhhccccccccccccccccc
Confidence                                33333221    22334444 788999999988754322    22223467899999999


Q ss_pred             CCCChHH----HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh-hcCCCCCCEEEccCCCCCccccccc----
Q 016686          152 TQIDDYA----ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA-LQNLNHLERLNLEQTQVSDATLFPL----  222 (384)
Q Consensus       152 n~i~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l----  222 (384)
                      |.+....    ...+...+.++.+++++|.+.+.....+        ... ......|+.+++++|.++......+    
T Consensus       265 n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l--------~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~  336 (460)
T d1z7xw1         265 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL--------CETLLEPGCQLESLWVKSCSFTAACCSHFSSVL  336 (460)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH--------HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchh--------hccccccccccccccccccchhhhhhhhccccc
Confidence            9887543    3345578889999999998864322200        001 1234678999999998877644433    


Q ss_pred             ccCCCCcEEEcCCCCCChhhHHh----cc-CCCCCCEEEccCCccCccccc----cccCCCCCCEEEccCCcCCCHHHHH
Q 016686          223 STFKELIHLSLRNASLTDVSLHQ----LS-SLSKLTNLSIRDAVLTNSGLG----SFKPPRSLKLLDLHGGWLLTEDAIL  293 (384)
Q Consensus       223 ~~~~~L~~L~L~~n~i~~~~~~~----l~-~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~  293 (384)
                      ..+++|++|++++|.+++.....    +. ..+.|++|++++|.+++.+..    .+..+++|++|++++|++ +++++.
T Consensus       337 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i-~~~g~~  415 (460)
T d1z7xw1         337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGIL  415 (460)
T ss_dssp             HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC-CHHHHH
T ss_pred             ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcC-CHHHHH
Confidence            35678999999999887654333    32 467799999999999875443    344568899999999987 777777


Q ss_pred             HHHHhCCCceeecccccccCCCccccCCCCCCchh
Q 016686          294 QFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS  328 (384)
Q Consensus       294 ~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~  328 (384)
                      .+...+..-.   .....+.+..+.+.+.....+.
T Consensus       416 ~l~~~l~~~~---~~L~~l~l~~~~~~~~~~~~l~  447 (460)
T d1z7xw1         416 QLVESVRQPG---CLLEQLVLYDIYWSEEMEDRLQ  447 (460)
T ss_dssp             HHHHHHTSTT---CCCCEEECTTCCCCHHHHHHHH
T ss_pred             HHHHHHHhCC---CccCEEECCCCCCCHHHHHHHH
Confidence            7665443111   0111456666766654444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=6.9e-19  Score=149.42  Aligned_cols=185  Identities=23%  Similarity=0.393  Sum_probs=98.7

Q ss_pred             CCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEc
Q 016686           45 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  124 (384)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  124 (384)
                      .+|++|++++|.++.+. .  +.++++|++|++++|.+.....+..+++++++++++|.++..  ..+..+ ++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l~-~--l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i--~~l~~l-~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-G--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGL-QSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-T--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTC-TTCCEEEC
T ss_pred             CCcCEEECCCCCCCcch-h--HhcCCCCcEeecCCceeecccccccccccccccccccccccc--cccccc-cccccccc
Confidence            44444555544444432 1  224455555555555444444444445555555554444421  123334 45555555


Q ss_pred             cCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCC
Q 016686          125 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL  204 (384)
Q Consensus       125 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L  204 (384)
                      +++...+...   ....+.++.+.++.+.+...  ..+..+++|+.|++++|.+.+..              .+..+++|
T Consensus       115 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--------------~l~~l~~L  175 (227)
T d1h6ua2         115 TSTQITDVTP---LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--------------PLANLSKL  175 (227)
T ss_dssp             TTSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--------------GGTTCTTC
T ss_pred             ccccccccch---hccccchhhhhchhhhhchh--hhhccccccccccccccccccch--------------hhcccccc
Confidence            5544433221   12345556666655555432  22445566666666666655431              34566777


Q ss_pred             CEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEcc
Q 016686          205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR  258 (384)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~  258 (384)
                      +.|++++|.+++.  ..+.++++|++|++++|++++..  .+.++++|+.|+++
T Consensus       176 ~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         176 TTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             eecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            7777777777663  23666777777777777777643  36677777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.8e-18  Score=145.59  Aligned_cols=208  Identities=20%  Similarity=0.331  Sum_probs=168.4

Q ss_pred             CCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEc
Q 016686           45 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  124 (384)
Q Consensus        45 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  124 (384)
                      .++..++++.+.++++..   +..+.+|+.|++.+|+|+.++.+.++++|++|++++|.+.+..+  +..+ ++++.+++
T Consensus        19 ~~~~~~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l-~~l~~l~~   92 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELEL   92 (227)
T ss_dssp             HHHHHHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEEC
T ss_pred             HHHHHHHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--cccc-cccccccc
Confidence            334456677777776542   23668899999999999998889999999999999999986543  6777 99999999


Q ss_pred             cCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCC
Q 016686          125 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL  204 (384)
Q Consensus       125 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L  204 (384)
                      ++|.++...  .+ ..+++|+.++++++...+.  ..+...+.++.+.++++.+....              .+..+++|
T Consensus        93 ~~n~~~~i~--~l-~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~L  153 (227)
T d1h6ua2          93 SGNPLKNVS--AI-AGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--------------PLAGLTNL  153 (227)
T ss_dssp             CSCCCSCCG--GG-TTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--------------GGGGCTTC
T ss_pred             ccccccccc--cc-ccccccccccccccccccc--chhccccchhhhhchhhhhchhh--------------hhcccccc
Confidence            999887543  23 5689999999999887654  34667889999999998876543              35577899


Q ss_pred             CEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccC
Q 016686          205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG  283 (384)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  283 (384)
                      +.|++++|.+.+..  .++++++|++|++++|++++..  .++.+++|++|++++|++++..  .+..+++|+.|++++
T Consensus       154 ~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         154 QYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ccccccccccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            99999999988753  4788999999999999998853  4788999999999999999754  378889999999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-17  Score=145.35  Aligned_cols=201  Identities=22%  Similarity=0.307  Sum_probs=135.1

Q ss_pred             CCCCccEEEeeCCCCCchhHHH-HHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhh-hCCC
Q 016686           90 QMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYM-SMMP  166 (384)
Q Consensus        90 ~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l-~~~~  166 (384)
                      ...+|++|+++++.++...... +..+ ++|++|++.++.++...+..+ +.+++|++|+++++ .+++.....+ ..++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c-~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhC-CCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence            3456777777777776544333 4444 777777777777776666555 45677777777774 4665443333 4567


Q ss_pred             CccEEEeeCCc-CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCC--CCCcccccc-cccCCCCcEEEcCCC-CCChh
Q 016686          167 SLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT--QVSDATLFP-LSTFKELIHLSLRNA-SLTDV  241 (384)
Q Consensus       167 ~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~-l~~~~~L~~L~L~~n-~i~~~  241 (384)
                      +|++|++++|. +++.....          .....++.|+.|+++++  .+++..... ...+++|++|++++| .+++.
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~----------~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQV----------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHH----------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             hccccccccccccccccchh----------hhcccccccchhhhcccccccccccccccccccccccccccccccCCCch
Confidence            77888877753 33221110          01223467888888764  344433222 346788888888876 47777


Q ss_pred             hHHhccCCCCCCEEEccCC-ccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCcee
Q 016686          242 SLHQLSSLSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV  304 (384)
Q Consensus       242 ~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~  304 (384)
                      ....+..+++|++|++++| .+++.+...+..+++|+.|++++|  .++.++..+...+|++++
T Consensus       192 ~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i  253 (284)
T d2astb2         192 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI  253 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE
T ss_pred             hhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCccccc
Confidence            7778888889999999885 688777777888899999999988  366677788888898774

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5e-17  Score=142.44  Aligned_cols=179  Identities=22%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             CCccEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCC-CCCchHHHHHHhCCCCCC
Q 016686           70 SLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLE  145 (384)
Q Consensus        70 ~~L~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~  145 (384)
                      ..|++|+++++.+...   ..+.++++|++|++++|.+.+..+..++.+ ++|+.|+++++ .++......+...+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcC-CCCcCccccccccccccccchhhHHHHhcc
Confidence            3444444444433322   223344444444444444444444444444 44555554443 344333333333444455


Q ss_pred             EEeccCC-CCChHHH-Hhhh-CCCCccEEEeeCCc--CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCC-CCCcccc
Q 016686          146 ILSLSGT-QIDDYAI-SYMS-MMPSLKFIDISNTD--IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATL  219 (384)
Q Consensus       146 ~L~l~~n-~i~~~~~-~~l~-~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~  219 (384)
                      +|+++++ .+++... ..+. ..+.|+.|+++++.  ++.....           .....+++|++|++++| .+++..+
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~-----------~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-----------TLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-----------HHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             ccccccccccccccchhhhcccccccchhhhccccccccccccc-----------ccccccccccccccccccCCCchhh
Confidence            5555443 2332211 1111 22344555544431  2211100           01233445555555443 3444444


Q ss_pred             cccccCCCCcEEEcCCC-CCChhhHHhccCCCCCCEEEccCC
Q 016686          220 FPLSTFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDA  260 (384)
Q Consensus       220 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~L~~L~l~~n  260 (384)
                      ..+.++++|++|++++| .+++.....++.+++|+.|+++++
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            44444555555555553 344444444445555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=7.5e-18  Score=141.02  Aligned_cols=166  Identities=23%  Similarity=0.353  Sum_probs=127.8

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL   99 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L   99 (384)
                      .+..|++|++++|.|+.++ ++..+++|++|++++|.++++++   +..+++|+.|++++|+++.++.+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~---~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc---cccCcccccccccccccccccccccccccccccc
Confidence            3667888888888887764 45678888888888888887764   3478888888888888888877888888888888


Q ss_pred             eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686          100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  179 (384)
Q Consensus       100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  179 (384)
                      ++|.+...  ..+..+ +.++.+++++|.++....   ...+++|+++++++|++.+..  .+..+++|++|++++|.++
T Consensus       120 ~~~~~~~~--~~l~~l-~~l~~l~~~~n~l~~~~~---~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         120 EHNGISDI--NGLVHL-PQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             TTSCCCCC--GGGGGC-TTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc--cccccc-cccccccccccccccccc---ccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            88877632  346666 888888888888775432   246788899998888887643  3778888999999988887


Q ss_pred             cchhhcccchhhhhhHHhhcCCCCCCEEEccC
Q 016686          180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQ  211 (384)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  211 (384)
                      +. +             .+..+++|++|++++
T Consensus       192 ~l-~-------------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DL-R-------------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             BC-G-------------GGTTCTTCSEEEEEE
T ss_pred             CC-h-------------hhcCCCCCCEEEccC
Confidence            54 2             477888888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.5e-19  Score=152.15  Aligned_cols=101  Identities=12%  Similarity=0.118  Sum_probs=48.0

Q ss_pred             cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccEEEeeC
Q 016686           25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSS  101 (384)
Q Consensus        25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~  101 (384)
                      +.++.++..++.+|..++  +++++|++++|.++.++.. .|.++++|++|++++|.+...   ..+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChh-Hhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            345555555555554443  3455555555555554443 244555555555555554332   2344455555554432


Q ss_pred             -CCCCchhHHHHHhccCCccEEEccCCCC
Q 016686          102 -SMIGDDSVEMVACVGANLRNLNLSNTRF  129 (384)
Q Consensus       102 -n~l~~~~~~~~~~~~~~L~~L~L~~n~l  129 (384)
                       +.+....+..+..+ ++|+.+++++|.+
T Consensus        88 ~n~l~~~~~~~~~~l-~~L~~l~l~~~~l  115 (242)
T d1xwdc1          88 ANNLLYINPEAFQNL-PNLQYLLISNTGI  115 (242)
T ss_dssp             CTTCCEECTTSEECC-TTCCEEEEESCCC
T ss_pred             ccccccccccccccc-ccccccccchhhh
Confidence             33433333333334 4444444444444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=4.8e-17  Score=146.80  Aligned_cols=161  Identities=19%  Similarity=0.248  Sum_probs=112.5

Q ss_pred             CCcEEEccCCCCCCCCCC-CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686            4 RLSFLNLAWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL   82 (384)
Q Consensus         4 ~L~~L~l~~n~i~~l~~~-~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l   82 (384)
                      ++++||+++++++.+|.. ++|++|++++|+|+.+|..   ..+|++|++++|.++.++..     .+.|++|++++|.+
T Consensus        39 ~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l-----p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQL  110 (353)
T ss_dssp             TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh-----cccccccccccccc
Confidence            689999999999999854 6899999999999988864   36899999999999876521     15699999999999


Q ss_pred             CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH-----
Q 016686           83 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-----  157 (384)
Q Consensus        83 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-----  157 (384)
                      ..++.+..+++|++|+++++.+.....    .. ..+..+.+..+.......   .+.++.++.+++..|.....     
T Consensus       111 ~~lp~~~~l~~L~~L~l~~~~~~~~~~----~~-~~l~~l~~~~~~~~~~~~---l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         111 EKLPELQNSSFLKIIDVDNNSLKKLPD----LP-PSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSCCCC----CC-TTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             ccccchhhhccceeecccccccccccc----cc-ccccchhhcccccccccc---ccccccceecccccccccccccccc
Confidence            988888889999999999988763221    11 455566655544322111   12345556665555432210     


Q ss_pred             -------------HHHhhhCCCCccEEEeeCCcCCc
Q 016686          158 -------------AISYMSMMPSLKFIDISNTDIKG  180 (384)
Q Consensus       158 -------------~~~~l~~~~~L~~L~l~~n~l~~  180 (384)
                                   ....+..++.++.+++++|....
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~  218 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  218 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence                         01123456778888888776554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.3e-17  Score=138.26  Aligned_cols=173  Identities=24%  Similarity=0.314  Sum_probs=133.6

Q ss_pred             EccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc
Q 016686            9 NLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF   85 (384)
Q Consensus         9 ~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~   85 (384)
                      .++.+.+++.   ..++++++|++++|.|+.+. ++..+++|++|++++|.++++++   +.++++|++|++++|.+..+
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~---l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc---ccCCcccccccccccccccc
Confidence            3455555543   24678889999999888763 46678899999999998888764   45889999999999988888


Q ss_pred             ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCC
Q 016686           86 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  165 (384)
Q Consensus        86 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~  165 (384)
                      +.+..++.|+.|++++|.....  ..+..+ ++|+.+++++|++....  . +..+++|+.|++.+|.+++.  ..+..+
T Consensus       100 ~~l~~l~~L~~L~l~~~~~~~~--~~~~~l-~~L~~L~l~~n~l~~~~--~-l~~~~~L~~L~l~~n~l~~l--~~l~~l  171 (199)
T d2omxa2         100 TPLANLTNLTGLTLFNNQITDI--DPLKNL-TNLNRLELSSNTISDIS--A-LSGLTSLQQLNFSSNQVTDL--KPLANL  171 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCCCCC--GGGTTC-TTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCC--GGGTTC
T ss_pred             cccccccccccccccccccccc--cccchh-hhhHHhhhhhhhhcccc--c-ccccccccccccccccccCC--ccccCC
Confidence            7788899999999998887743  235666 88999999999887542  2 35688999999999988765  347888


Q ss_pred             CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEE
Q 016686          166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL  207 (384)
Q Consensus       166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  207 (384)
                      ++|++|++++|++++. +             .++.+++|++|
T Consensus       172 ~~L~~L~ls~N~i~~i-~-------------~l~~L~~L~~L  199 (199)
T d2omxa2         172 TTLERLDISSNKVSDI-S-------------VLAKLTNLESL  199 (199)
T ss_dssp             TTCCEEECCSSCCCCC-G-------------GGGGCTTCSEE
T ss_pred             CCCCEEECCCCCCCCC-c-------------cccCCCCCCcC
Confidence            9999999999988764 2             36677888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.6e-17  Score=134.00  Aligned_cols=149  Identities=21%  Similarity=0.352  Sum_probs=74.5

Q ss_pred             CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686           68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  147 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  147 (384)
                      .++++++|++++|.+..++.+..+++|++|++++|++++..+  +..+ ++|+.|++++|.+.....   ++.++.|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l-~~L~~L~l~~n~~~~~~~---l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP---LANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG---GTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCC-cccccccccccccccccc---cccccccccc
Confidence            345666666666666666556666666666666666654322  4444 556666665555443221   2345555555


Q ss_pred             eccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCC
Q 016686          148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  227 (384)
Q Consensus       148 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  227 (384)
                      +++++.....  ..+..+++|+.+++++|.+... +             .+..+++++.|++.+|++++..  .++++++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-------------~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~  173 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-S-------------ALSGLTSLQQLNFSSNQVTDLK--PLANLTT  173 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-------------GGTTCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc-c-------------cccccccccccccccccccCCc--cccCCCC
Confidence            5555544322  2234445555555555544332 1             2334445555555555444421  2344444


Q ss_pred             CcEEEcCCCCCCh
Q 016686          228 LIHLSLRNASLTD  240 (384)
Q Consensus       228 L~~L~L~~n~i~~  240 (384)
                      |++|++++|++++
T Consensus       174 L~~L~ls~N~i~~  186 (199)
T d2omxa2         174 LERLDISSNKVSD  186 (199)
T ss_dssp             CCEEECCSSCCCC
T ss_pred             CCEEECCCCCCCC
Confidence            4444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=1e-16  Score=144.61  Aligned_cols=191  Identities=17%  Similarity=0.224  Sum_probs=109.9

Q ss_pred             cCCCCccEEEeeCCCCCchh----HHHHHhccCCccEEEccCCCCCchHHH------------HHHhCCCCCCEEeccCC
Q 016686           89 TQMKALEHLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSSAGVG------------ILAGHLPNLEILSLSGT  152 (384)
Q Consensus        89 ~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~------------~~~~~l~~L~~L~l~~n  152 (384)
                      ..+++|++|++++|.+....    ...+... ++|+.|++++|.+......            ......+.|+.+.+++|
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCCcccccccccccccccccchhhhhccc-ccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            34455555555555554432    2222333 5555666655554322111            11134567788888777


Q ss_pred             CCChHH----HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc----cccccc
Q 016686          153 QIDDYA----ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLST  224 (384)
Q Consensus       153 ~i~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~  224 (384)
                      .+++..    ...+..++.++.|++++|.+.......       .....+..+++|+.|++++|.++...    ...+..
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~-------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH-------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH-------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             cccccccccccchhhhhhhhccccccccccccccccc-------chhhhhcchhhhcccccccccccccccccccccccc
Confidence            776433    233456677888888877776431110       00013556777888888888776542    234557


Q ss_pred             CCCCcEEEcCCCCCChhhHHhc----c--CCCCCCEEEccCCccCcccccccc-----CCCCCCEEEccCCcCC
Q 016686          225 FKELIHLSLRNASLTDVSLHQL----S--SLSKLTNLSIRDAVLTNSGLGSFK-----PPRSLKLLDLHGGWLL  287 (384)
Q Consensus       225 ~~~L~~L~L~~n~i~~~~~~~l----~--~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~~  287 (384)
                      +++|++|++++|.+++.....+    .  ..+.|++|++++|.+++.+...+.     ..+.|+.|++++|++.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            7778888888888876544443    2  245677888888877765433222     3467788888887763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.6e-18  Score=145.68  Aligned_cols=150  Identities=15%  Similarity=0.105  Sum_probs=103.1

Q ss_pred             CcEEEccCCCCCCCC-CC-CCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec-C
Q 016686            5 LSFLNLAWTGVTKLP-NI-SSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN-S   80 (384)
Q Consensus         5 L~~L~l~~n~i~~l~-~~-~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~-n   80 (384)
                      .+.++.++.+++.+| .+ +++++|++++|.|+.+|...+ ++++|++|++++|.+....+...|.+++.++++.+.. +
T Consensus        10 ~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            367889988899887 44 489999999999999987654 8999999999999987654444577899999999875 4


Q ss_pred             CCCCc--ccccCCCCccEEEeeCCCCCchhHH-HHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCC
Q 016686           81 SLSRF--CFLTQMKALEHLDLSSSMIGDDSVE-MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID  155 (384)
Q Consensus        81 ~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~  155 (384)
                      .+...  ..+..+++|+++++++|.+....+. .+..+ ..+..+...++.+.......+.+....++.|++.+|+++
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l-~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccchhhhcccccccccccc-cccccccccccccccccccccccccccceeeeccccccc
Confidence            56555  4678899999999999988743221 12222 444444445555543333222221234555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.3e-17  Score=135.75  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=137.4

Q ss_pred             CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEE
Q 016686           43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  122 (384)
Q Consensus        43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  122 (384)
                      .+.+|++|++++|.++.+..   +..+++|++|++++|++++++.+..+++|++|++++|++++ ++ .+..+ ++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~---l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l-~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDL-KKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTC-TTCCEE
T ss_pred             HhcCccEEECcCCCCCCchh---HhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-ccccc-cccccc
Confidence            35689999999999988753   45789999999999999988888899999999999999985 33 46777 899999


Q ss_pred             EccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC
Q 016686          123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN  202 (384)
Q Consensus       123 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  202 (384)
                      ++++|.+....  . +..++.++.+++++|.+++.  ..+..+++|+.+++++|++.+..              .+..++
T Consensus       118 ~l~~~~~~~~~--~-l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--------------~l~~l~  178 (210)
T d1h6ta2         118 SLEHNGISDIN--G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--------------PLAGLT  178 (210)
T ss_dssp             ECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--------------GGTTCT
T ss_pred             ccccccccccc--c-cccccccccccccccccccc--ccccccccccccccccccccccc--------------cccCCC
Confidence            99999876532  2 35688999999999998754  35678899999999999987642              367889


Q ss_pred             CCCEEEccCCCCCcccccccccCCCCcEEEcCC
Q 016686          203 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRN  235 (384)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~  235 (384)
                      +|+.|++++|++++.  ..+.++++|++|++++
T Consensus       179 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         179 KLQNLYLSKNHISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred             CCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence            999999999999874  3588999999999864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=1.1e-15  Score=137.65  Aligned_cols=248  Identities=17%  Similarity=0.170  Sum_probs=166.3

Q ss_pred             CCCCccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCC---c-------hhHHHHHhccCCccEEEccCCCCCc
Q 016686           68 ETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIG---D-------DSVEMVACVGANLRNLNLSNTRFSS  131 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~---~-------~~~~~~~~~~~~L~~L~L~~n~l~~  131 (384)
                      ....+++|++++|.+...      ..+...++|+.++++++...   .       .+...+..+ ++|+.|++++|.++.
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC-CCccccccccccccc
Confidence            344455555555544322      23445556666666554322   1       123444555 899999999999876


Q ss_pred             hHHHH---HHhCCCCCCEEeccCCCCChHHHHhh-------------hCCCCccEEEeeCCcCCcchhhcccchhhhhhH
Q 016686          132 AGVGI---LAGHLPNLEILSLSGTQIDDYAISYM-------------SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL  195 (384)
Q Consensus       132 ~~~~~---~~~~l~~L~~L~l~~n~i~~~~~~~l-------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  195 (384)
                      .....   .....++|++|++++|.++......+             ...+.++.+.+++|.+.......        -.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~--------l~  179 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--------WA  179 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH--------HH
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc--------cc
Confidence            54332   23457899999999998864332222             25678999999999887542220        01


Q ss_pred             HhhcCCCCCCEEEccCCCCCcc-----cccccccCCCCcEEEcCCCCCChhh----HHhccCCCCCCEEEccCCccCccc
Q 016686          196 TALQNLNHLERLNLEQTQVSDA-----TLFPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKLTNLSIRDAVLTNSG  266 (384)
Q Consensus       196 ~~~~~~~~L~~L~l~~n~l~~~-----~~~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l~~n~l~~~~  266 (384)
                      ..+..++.++.|++++|.++..     ....+..+++|+.|++++|.++...    ...+..+++|++|++++|.+++.+
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            1456778999999999998864     2334668899999999999997653    455678999999999999999876


Q ss_pred             ccccc------CCCCCCEEEccCCcCCCHHHHHHHHH----hCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686          267 LGSFK------PPRSLKLLDLHGGWLLTEDAILQFCK----MHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL  333 (384)
Q Consensus       267 ~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l  333 (384)
                      ...+.      ..+.|++|++++|.+ +..+...++.    ..+.++       .+++++|.+... .+.+..+..+
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i-~~~~~~~l~~~l~~~~~~L~-------~L~l~~N~~~~~-~~~~~~l~~~  327 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLL-------FLELNGNRFSEE-DDVVDEIREV  327 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCC-------EEECTTSBSCTT-SHHHHHHHHH
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcC-ChHHHHHHHHHHHccCCCCC-------EEECCCCcCCCc-chHHHHHHHH
Confidence            55442      236899999999997 7776655554    455555       678889988642 3334444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=2.2e-16  Score=142.35  Aligned_cols=140  Identities=21%  Similarity=0.250  Sum_probs=107.7

Q ss_pred             CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686           22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  101 (384)
Q Consensus        22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~  101 (384)
                      .++++|+++++.++.+|+.   .++|++|++++|.++.++..     ..+|+.|++++|+++.++.+  .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccchhhhh--ccccccccccc
Confidence            4789999999999998853   47899999999999988643     36899999999998877543  24699999999


Q ss_pred             CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686          102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  181 (384)
Q Consensus       102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  181 (384)
                      |.+.. .|. +..+ ++|+.++++++.+....     .....+..+.+..+.....  ..+..++.++.+++..|.....
T Consensus       108 n~l~~-lp~-~~~l-~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         108 NQLEK-LPE-LQNS-SFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SCCSS-CCC-CTTC-TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccc-ccc-hhhh-ccceeeccccccccccc-----cccccccchhhcccccccc--ccccccccceeccccccccccc
Confidence            99884 343 4566 89999999999876432     2346788888776654432  3456778899999998876543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=3.8e-16  Score=128.56  Aligned_cols=137  Identities=15%  Similarity=0.184  Sum_probs=108.7

Q ss_pred             CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686          144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  223 (384)
Q Consensus       144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  223 (384)
                      .++++.++++++. +|..+  .+.+++|++++|.+++.++..           .|..+++|+.|++++|.+....+..+.
T Consensus        10 ~~~v~Cs~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~~~~~~-----------~f~~l~~L~~L~L~~N~i~~~~~~~~~   75 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDG-----------LFGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSC-----------SGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CCEEEEeCCCcCc-cCCCC--CCCCCEEEeCCCCCccccccc-----------ccCCCceEeeeeccccccccccccccc
Confidence            4566677776663 33333  257888888888887654332           577888999999999999888888888


Q ss_pred             cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHH
Q 016686          224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ  294 (384)
Q Consensus       224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  294 (384)
                      .+++|++|++++|+++...+.+|.++++|++|+|++|+|+...+..|..+++|++++|++|++.+......
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH
Confidence            88999999999999998888888999999999999999998888888889999999999998866544433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=7.2e-17  Score=132.99  Aligned_cols=109  Identities=16%  Similarity=0.292  Sum_probs=49.6

Q ss_pred             CCCEEeccCCCCCh-HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccc
Q 016686          143 NLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  221 (384)
Q Consensus       143 ~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  221 (384)
                      .+++|++++|.++. .....|..+++|++|++++|.+....+.            .+..++.|++|++++|+++...+..
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~------------~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------AFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------TTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc------------ccccccccceeeeccccccccCHHH
Confidence            34444444444432 1123334444444444444444444333            3444444444444444444444444


Q ss_pred             cccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccC
Q 016686          222 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  263 (384)
Q Consensus       222 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  263 (384)
                      |.++++|++|+|++|+|++..+..|..+++|+++++++|.+.
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            444444444444444444444444444444555555444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.8e-15  Score=118.61  Aligned_cols=125  Identities=15%  Similarity=0.141  Sum_probs=74.6

Q ss_pred             CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEE
Q 016686           20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHL   97 (384)
Q Consensus        20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L   97 (384)
                      ++.++++|++++|+|+.++..+..+++|+.|++++|.++.++   .|..+++|++|++++|.+..++  .+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~---~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC---CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC---CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            455666777777776666543335666777777777666653   2446667777777777666652  24456677777


Q ss_pred             EeeCCCCCch-hHHHHHhccCCccEEEccCCCCCchH--HHHHHhCCCCCCEEe
Q 016686           98 DLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILS  148 (384)
Q Consensus        98 ~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~  148 (384)
                      ++++|.+... ....+..+ ++|+.+++++|.++...  ....+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l-~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccc-cccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777766532 12345555 67777777777654321  112234567777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.3e-15  Score=112.64  Aligned_cols=97  Identities=19%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             cEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686            6 SFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL   82 (384)
Q Consensus         6 ~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l   82 (384)
                      |.|++++|+++.++   .+++|++|++++|.|+++|+.+..+++|++|++++|.++.++.   +.++++|++|++++|++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~---~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc---cccccccCeEECCCCcc
Confidence            46777777776554   4566777777777777776666677777777777777776642   34677777777777776


Q ss_pred             CCc---ccccCCCCccEEEeeCCCCC
Q 016686           83 SRF---CFLTQMKALEHLDLSSSMIG  105 (384)
Q Consensus        83 ~~~---~~~~~~~~L~~L~L~~n~l~  105 (384)
                      ..+   ..+..+++|+.|++++|+++
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            655   24566667777777776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.3e-15  Score=117.74  Aligned_cols=129  Identities=14%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc
Q 016686           41 NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR  120 (384)
Q Consensus        41 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  120 (384)
                      +.++.++++|++++|.++.++..  +..+++|+.|++++|.|+.++.+..+++|++|++++|.++...+..+..+ ++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~--~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l-~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQAL-PDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG--GGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHC-TTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCcc--ccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccc-cccc
Confidence            34778899999999999988643  45789999999999999988888999999999999999986555556667 8999


Q ss_pred             EEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH---HHHhhhCCCCccEEE
Q 016686          121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFID  172 (384)
Q Consensus       121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~---~~~~l~~~~~L~~L~  172 (384)
                      .|++++|.+.....-..+..+++|++|++++|+++..   .+..+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999987543212235688888888888876532   233466777777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6.1e-15  Score=111.75  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=92.4

Q ss_pred             cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCC
Q 016686           25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI  104 (384)
Q Consensus        25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l  104 (384)
                      |.|++++|+|+.++ .+..+++|++|++++|.++.+++.  +..+++|++|++++|.|+.++.+..+++|++|++++|.+
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~--~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhh--hhhhhcccccccccccccccCccccccccCeEECCCCcc
Confidence            57899999998775 467889999999999999988764  458899999999999999888888999999999999988


Q ss_pred             Cchh-HHHHHhccCCccEEEccCCCCCch--HHHHHHhCCCCCCEE
Q 016686          105 GDDS-VEMVACVGANLRNLNLSNTRFSSA--GVGILAGHLPNLEIL  147 (384)
Q Consensus       105 ~~~~-~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L  147 (384)
                      +... +..+..+ ++|+.+++++|.++..  ....+...+|+|+.+
T Consensus        78 ~~~~~~~~l~~~-~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGC-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCC-CCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            7532 3456666 8888888888887532  122333446676665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=4.1e-14  Score=116.51  Aligned_cols=129  Identities=19%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             CCccEEeccCC--CCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEE
Q 016686           45 APLAKISLAGT--TFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  122 (384)
Q Consensus        45 ~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  122 (384)
                      ..++.+++++.  .+..++..  +..+++|++|++++|.|+.++.+..+++|++|++++|.++. ++.....+ ++|+.|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~s--l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~-~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK-IENLDAVA-DTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHH--HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS-CSSHHHHH-HHCCEE
T ss_pred             cccceeeeecccCchhhhhhH--HhcccccceeECcccCCCCcccccCCccccChhhccccccc-cccccccc-cccccc
Confidence            33445555443  23334333  33566666666666666666556666666666666666553 22222333 556666


Q ss_pred             EccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH-HHhhhCCCCccEEEeeCCcCCc
Q 016686          123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDIKG  180 (384)
Q Consensus       123 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~L~l~~n~l~~  180 (384)
                      ++++|.++...  .+ ..+++|+.|++++|.+++.. ...+..+++|+.|++++|.+..
T Consensus        99 ~l~~N~i~~l~--~~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          99 WISYNQIASLS--GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECSEEECCCHH--HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccc--cc-cccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            66666666432  12 34566677777666665432 2456666677777777666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1.2e-13  Score=113.68  Aligned_cols=128  Identities=20%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             CCcEEEccCC--CchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccc-cCCCCccEEEe
Q 016686           23 SLECLNLSNC--TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL-TQMKALEHLDL   99 (384)
Q Consensus        23 ~L~~L~ls~n--~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~~L~~L~L   99 (384)
                      ..+.+++.+.  .+..++..+..+++|++|++++|.++.++.   +..+++|++|++++|.+..++.+ ..+++|+.|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~---l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC---HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc---ccCCccccChhhccccccccccccccccccccccc
Confidence            4566666654  455667777788899999999988887742   44778899999999988877433 33467889999


Q ss_pred             eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCCh
Q 016686          100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD  156 (384)
Q Consensus       100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~  156 (384)
                      ++|.++..  ..+..+ ++|+.|++++|+++....-..++.+++|+.|++++|++..
T Consensus       101 ~~N~i~~l--~~~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASL--SGIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCH--HHHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc--cccccc-ccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            99988842  456777 8899999999988765432334678899999998887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-11  Score=96.74  Aligned_cols=117  Identities=18%  Similarity=0.159  Sum_probs=92.7

Q ss_pred             CCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCC-CCCcccccccccCCCCcEEEcCCCCCChhhH
Q 016686          165 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLRNASLTDVSL  243 (384)
Q Consensus       165 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~  243 (384)
                      +...+.++.+++.+...+.             .+..++++++|++++| .++.+.+..|..+++|+.|++++|+|+...+
T Consensus         7 c~~~~~l~c~~~~~~~~p~-------------~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   73 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLH-------------HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTT-------------TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             cCCCCeEEecCCCCccCcc-------------cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc
Confidence            3445667777777765433             3667788999999766 5888777888999999999999999999888


Q ss_pred             HhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHH
Q 016686          244 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF  295 (384)
Q Consensus       244 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  295 (384)
                      .+|..+++|++|++++|+++...+..+.. ..|+.|+|++|++.+.+....+
T Consensus        74 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~~~l  124 (156)
T d2ifga3          74 DAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWL  124 (156)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGGHHH
T ss_pred             ccccccccccceeccCCCCcccChhhhcc-ccccccccCCCcccCCchHHHH
Confidence            89999999999999999999766655554 4799999999999766654433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.8e-10  Score=89.19  Aligned_cols=107  Identities=16%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc-CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccc
Q 016686          143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  221 (384)
Q Consensus       143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  221 (384)
                      ..+.++.+++.+.. .|..+..++++++|++++++ ++...+.            +|..+++|+.|++++|+++.+.+.+
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~------------~f~~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELR------------DLRGLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGG------------GSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCch------------hhccccccCcceeeccccCCccccc
Confidence            44556666666553 34556667778888887654 6655555            5777888888888888888877777


Q ss_pred             cccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccC
Q 016686          222 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  263 (384)
Q Consensus       222 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  263 (384)
                      |..+++|++|+|++|+++...+..+.. ..|++|++++|++.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccccccccceeccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            888888888888888887755555543 36888888888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.38  E-value=7.4e-07  Score=70.02  Aligned_cols=13  Identities=15%  Similarity=-0.051  Sum_probs=7.0

Q ss_pred             CCCCCEEEccCCc
Q 016686          273 PRSLKLLDLHGGW  285 (384)
Q Consensus       273 ~~~L~~L~l~~n~  285 (384)
                      .++|+.|+++.+.
T Consensus       130 n~sL~~l~l~~~~  142 (167)
T d1pgva_         130 NESLLRVGISFAS  142 (167)
T ss_dssp             CSSCCEEECCCCC
T ss_pred             CCCccEeeCcCCC
Confidence            3555666655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.8e-09  Score=81.03  Aligned_cols=80  Identities=21%  Similarity=0.224  Sum_probs=46.2

Q ss_pred             CCCCccEEEeecCCCCCcc----cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCch------HHHHH
Q 016686           68 ETSLLSFLDVSNSSLSRFC----FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA------GVGIL  137 (384)
Q Consensus        68 ~l~~L~~L~ls~n~l~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~------~~~~~  137 (384)
                      +++.|++|++++|+|+.++    .+..+++|+.|++++|.++....-..... ..|+.+++.+|.+...      ....+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~-~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG-LKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT-CCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhc-cccceeecCCCCcCcCcccchhHHHHH
Confidence            5666666666666666552    23456667777777777664333233333 4567777777766431      12233


Q ss_pred             HhCCCCCCEEe
Q 016686          138 AGHLPNLEILS  148 (384)
Q Consensus       138 ~~~l~~L~~L~  148 (384)
                      ...+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45677787775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.30  E-value=8.3e-07  Score=69.71  Aligned_cols=64  Identities=17%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             ccCCCCccEEEeeCCCCCchhH----HHHHhccCCccEEEccCCCCCchHHHHHHh---CCCCCCEEeccCC
Q 016686           88 LTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSSAGVGILAG---HLPNLEILSLSGT  152 (384)
Q Consensus        88 ~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~l~~L~~L~l~~n  152 (384)
                      +...+.|++|++++|.+.....    ..+... +.|+.|++++|.++......++.   ..++|++|++++|
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n-~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhc-ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3344445555555555543222    222333 45555555555555443333222   2234555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.6e-08  Score=76.29  Aligned_cols=82  Identities=26%  Similarity=0.211  Sum_probs=55.0

Q ss_pred             cCCCCccEEEeeCCCCCch--hHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH-------HH
Q 016686           89 TQMKALEHLDLSSSMIGDD--SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-------AI  159 (384)
Q Consensus        89 ~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-------~~  159 (384)
                      ..+++|++|++++|+++..  .+..+..+ ++|+.|++++|.++........+ ..+|+.|++++|++...       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l-~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHS-TTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhC-CcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHH
Confidence            4577888888888888753  34556666 88888888888887644433333 45688888888877532       12


Q ss_pred             HhhhCCCCccEEE
Q 016686          160 SYMSMMPSLKFID  172 (384)
Q Consensus       160 ~~l~~~~~L~~L~  172 (384)
                      ..+..+++|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            3345678888775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.10  E-value=6.5e-06  Score=64.36  Aligned_cols=16  Identities=19%  Similarity=0.069  Sum_probs=7.3

Q ss_pred             CCCCccEEEeeCCcCC
Q 016686          164 MMPSLKFIDISNTDIK  179 (384)
Q Consensus       164 ~~~~L~~L~l~~n~l~  179 (384)
                      ..+.|++|++++|.++
T Consensus        44 ~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCCSCCEEECTTSCCC
T ss_pred             cCCccCeeeccCCccc
Confidence            3444444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=1.2e-05  Score=62.84  Aligned_cols=88  Identities=14%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             ccCCCCccEEEeeCCCCCchhHHH----HHhccCCccEEEccCCCCCchHHHHHH---hCCCCCCEEec--cCCCCChHH
Q 016686           88 LTQMKALEHLDLSSSMIGDDSVEM----VACVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSL--SGTQIDDYA  158 (384)
Q Consensus        88 ~~~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l--~~n~i~~~~  158 (384)
                      +..+++|++|++++|.++......    +... +.++.+++.+|.++......+.   ...++|+.+++  .+|.+++..
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~-~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhc-ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            334455555555555555433322    2222 5555556555555544433322   22345555444  334454322


Q ss_pred             ----HHhhhCCCCccEEEeeCC
Q 016686          159 ----ISYMSMMPSLKFIDISNT  176 (384)
Q Consensus       159 ----~~~l~~~~~L~~L~l~~n  176 (384)
                          ...+...+.|++|++..+
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCC
Confidence                223334555565555444